@datagrok-libraries/bio 5.28.3 → 5.29.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/package.json +1 -1
- package/src/utils/macromolecule.d.ts +1 -0
- package/src/utils/macromolecule.d.ts.map +1 -1
- package/src/utils/macromolecule.js.map +1 -1
- package/src/utils/units-handler.d.ts.map +1 -1
- package/src/utils/units-handler.js +13 -9
- package/src/utils/units-handler.js.map +1 -1
- package/src/viewers/ngl-gl-viewer.d.ts +26 -15
- package/src/viewers/ngl-gl-viewer.d.ts.map +1 -1
- package/src/viewers/ngl-gl-viewer.js +23 -0
- package/src/viewers/ngl-gl-viewer.js.map +1 -1
package/package.json
CHANGED
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@@ -1 +1 @@
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1
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-
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{"version":3,"file":"macromolecule.d.ts","sourceRoot":"","sources":["macromolecule.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAKtC,OAAO,EAAC,UAAU,EAAC,MAAM,iBAAiB,CAAC;AAO3C,0EAA0E;AAC1E,0BAAkB,QAAQ;IACxB,KAAK,UAAU;IACf,SAAS,cAAc;IACvB,IAAI,SAAS;CACd;AAED,0BAAkB,SAAS;IACzB,OAAO,YAAY;IACnB,GAAG,QAAQ;CACZ;AAED,0BAAkB,QAAQ;IACxB,GAAG,QAAQ;IACX,GAAG,QAAQ;IACX,EAAE,OAAO;IACT,cAAc;IACd,EAAE,OAAO;CACV;AAED,0BAAkB,IAAI;IACpB,OAAO,YAAY;IACnB,QAAQ,aAAa;IACrB,YAAY,kBAAkB;IAC9B,mBAAmB,yBAAyB;IAC5C,SAAS,cAAc;CACxB;AAED,MAAM,MAAM,WAAW,GAAG;IAAE,IAAI,EAAE,YAAY,CAAC;IAAC,UAAU,EAAE,OAAO,CAAA;CAAE,CAAA;AACrE,MAAM,MAAM,YAAY,GAAG,CAAC,GAAG,EAAE,MAAM,KAAK,MAAM,EAAE,CAAC;AACrD,MAAM,MAAM,YAAY,GAAG;IAAE,CAAC,CAAC,EAAE,MAAM,GAAG,MAAM,CAAA;CAAE,CAAC;AAEnD;;;;;GAKG;AACH,wBAAgB,QAAQ,CAAC,MAAM,EAAE,EAAE,CAAC,MAAM,EAAE,SAAS,EAAE,MAAM,EAAE,QAAQ,EAAE,YAAY,GAAG,WAAW,CAsBlG;AAED,eAAO,MAAM,SAAS,EAAE,MAA8B,CAAC;AAEvD;;;GAGG;AACH,wBAAgB,eAAe,CAAC,GAAG,EAAE,GAAG,GAAG,MAAM,EAAE,CAOlD;AAED;;;;GAIG;AACH,wBAAgB,wBAAwB,CAAC,SAAS,EAAE,MAAM,EAAE,KAAK,GAAE,MAAM,GAAG,SAAqB,GAAG,YAAY,CAI/G;AAKD;;;;GAIG;AACH,wBAAgB,cAAc,CAAC,GAAG,EAAE,GAAG,GAAG,MAAM,EAAE,CAgBjD;AAED;;;;;GAKG;AACH,wBAAgB,WAAW,CAAC,KAAK,EAAE,MAAM,EAAE,SAAS,EAAE,MAAM,EAAE,KAAK,GAAE,MAAM,GAAG,SAAqB,GAAG,YAAY,CAWjH;AAED;;;GAGG;AACH,wBAAgB,oBAAoB,CAAC,GAAG,EAAE,EAAE,CAAC,MAAM,GAAG,YAAY,CAOjE;AAID,+CAA+C;AAC/C,wBAAgB,cAAc,CAAC,KAAK,EAAE,MAAM,EAAE,kBAAkB,EAAE,MAAM,GAAG,MAAM,CAKhF;AAED,MAAM;AACN,wBAAgB,WAAW,CAAC,QAAQ,EAAE,QAAQ,GAAG,GAAG,CAAC,MAAM,CAAC,CAW3D;AAED;;;;;GAKG;AACH,wBAAgB,qBAAqB,CAAC,IAAI,EAAE,YAAY,EAAE,QAAQ,EAAE,GAAG,CAAC,MAAM,CAAC,EAAE,SAAS,GAAE,MAAY,GAAG,MAAM,CAchH;AAED,eAAO,MAAM,kBAAkB,EAAE,CAAC,MAAM,EAAE,GAAG,CAAC,MAAM,CAAC,EAAE,MAAM,CAAC,EAI7D,CAAC;AAEF,8BAA8B;AAC9B,KAAK,aAAa,GAAG,CAAC,MAAM,EAAE,GAAG,CAAC,MAAM,CAAC,EAAE,MAAM,CAAC,CAAC;AAInD,+BAA+B;AAC/B,wBAAgB,cAAc,CAAC,IAAI,EAAE,YAAY,EAAE,UAAU,EAAE,aAAa,EAAE,EAAE,SAAS,GAAE,MAAY,UAetG;AAED;;;;GAIG;AACH,wBAAgB,aAAa,CAAC,MAAM,EAAE,EAAE,CAAC,MAAM,EAAE,SAAS,GAAE,MAAU,GAAG,UAAU,CAYlF;AAED,wBAAgB,gBAAgB,CAAC,WAAW,EAAE,MAAM,GAAG,UAAU,CAYhE;AAED,wBAAgB,YAAY,CAAC,EAAE,EAAE,EAAE,CAAC,SAAS,GAAG,EAAE,CAAC,MAAM,GAAG,IAAI,CAS/D"}
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{"version":3,"file":"macromolecule.js","sourceRoot":"","sources":["macromolecule.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AACtC,OAAO,EAAE,MAAM,IAAI,CAAC;AAEpB,OAAO,EAAC,MAAM,EAAC,MAAM,iDAAiD,CAAC;AACvE,OAAO,EAAC,YAAY,EAAE,gBAAgB,EAAC,MAAM,iDAAiD,CAAC;AAE/F,OAAO,EAAa,kBAAkB,EAAC,MAAM,eAAe,CAAC;AAC7D,OAAO,EAAc,mBAAmB,EAAC,MAAM,gBAAgB,CAAC;AAChE,OAAO,EAAC,kBAAkB,EAAC,MAAM,YAAY,CAAC;AAC9C,OAAO,EAAC,YAAY,EAAC,MAAM,wBAAwB,CAAC;
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+
{"version":3,"file":"macromolecule.js","sourceRoot":"","sources":["macromolecule.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AACtC,OAAO,EAAE,MAAM,IAAI,CAAC;AAEpB,OAAO,EAAC,MAAM,EAAC,MAAM,iDAAiD,CAAC;AACvE,OAAO,EAAC,YAAY,EAAE,gBAAgB,EAAC,MAAM,iDAAiD,CAAC;AAE/F,OAAO,EAAa,kBAAkB,EAAC,MAAM,eAAe,CAAC;AAC7D,OAAO,EAAc,mBAAmB,EAAC,MAAM,gBAAgB,CAAC;AAChE,OAAO,EAAC,kBAAkB,EAAC,MAAM,YAAY,CAAC;AAC9C,OAAO,EAAC,YAAY,EAAC,MAAM,wBAAwB,CAAC;AA6BnD,CAAC;AAMF;;;;;GAKG;AACH,MAAM,UAAU,QAAQ,CAAC,MAAiB,EAAE,SAAiB,EAAE,QAAsB;IACnF,MAAM,IAAI,GAA4B,EAAE,CAAC;IACzC,IAAI,UAAU,GAAG,IAAI,CAAC;IACtB,IAAI,WAAW,GAAG,IAAI,CAAC;IAEvB,KAAK,MAAM,GAAG,IAAI,MAAM,CAAC,UAAU,EAAE;QACnC,MAAM,IAAI,GAAG,QAAQ,CAAC,GAAG,CAAC,CAAC;QAE3B,IAAI,WAAW,IAAI,IAAI;YACrB,WAAW,GAAG,IAAI,CAAC,MAAM,CAAC;aACvB,IAAI,IAAI,CAAC,MAAM,KAAK,WAAW;YAClC,UAAU,GAAG,KAAK,CAAC;QAErB,IAAI,IAAI,CAAC,MAAM,IAAI,SAAS,EAAE;YAC5B,KAAK,MAAM,CAAC,IAAI,IAAI,EAAE;gBACpB,IAAI,CAAC,CAAC,CAAC,IAAI,IAAI,CAAC;oBACd,IAAI,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC;gBACd,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC;aACd;SACF;KACF;IACD,OAAO,EAAC,IAAI,EAAE,IAAI,EAAE,UAAU,EAAE,UAAU,EAAC,CAAC;AAC9C,CAAC;AAED,MAAM,CAAC,MAAM,SAAS,GAAW,qBAAqB,CAAC;AAEvD;;;GAGG;AACH,MAAM,UAAU,eAAe,CAAC,GAAQ;IACtC,OAAO,EAAE,CAAmB,GAAG,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,SAAS,CAAC,CAAC;SAC5D,GAAG,CAAC,CAAC,EAAoB,EAAE,EAAE;QAC5B,MAAM,CAAC,GAAW,EAAE,CAAC,CAAC,CAAC,CAAC;QACxB,MAAM,IAAI,GAAG,CAAC,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;QACtC,OAAO,IAAI,CAAC;IACd,CAAC,CAAC,CAAC,OAAO,EAAE,CAAC;AACjB,CAAC;AAED;;;;GAIG;AACH,MAAM,UAAU,wBAAwB,CAAC,SAAiB,EAAE,QAA4B,SAAS;IAC/F,OAAO,CAAC,GAAW,EAAE,EAAE;QACrB,OAAO,GAAG,CAAC,KAAK,CAAC,SAAS,EAAE,KAAK,CAAC,CAAC;IACrC,CAAC,CAAC;AACJ,CAAC;AAED,MAAM,MAAM,GAAW,iCAAiC,CAAC;AACzD,MAAM,SAAS,GAAW,gBAAgB,CAAC;AAE3C;;;;GAIG;AACH,MAAM,UAAU,cAAc,CAAC,GAAQ;IACrC,MAAM,CAAC,SAAS,GAAG,CAAC,CAAC;IACrB,MAAM,EAAE,GAA2B,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,QAAQ,EAAE,CAAC,CAAC;IAC/D,MAAM,KAAK,GAAkB,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC;IAE/C,MAAM,aAAa,GAAG,CAAC,EAAU,EAAU,EAAE;QAC3C,SAAS,CAAC,SAAS,GAAG,CAAC,CAAC;QACxB,MAAM,IAAI,GAAG,SAAS,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAChC,IAAI,IAAI,IAAI,IAAI,CAAC,MAAM,IAAI,CAAC;YAC1B,OAAO,IAAI,CAAC,CAAC,CAAC,CAAC;;YAEf,OAAO,EAAE,CAAC;IACd,CAAC,CAAC;IAEF,MAAM,MAAM,GAAa,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC;IACvD,OAAO,MAAM,CAAC,GAAG,CAAC,aAAa,CAAC,CAAC;AACnC,CAAC;AAED;;;;;GAKG;AACH,MAAM,UAAU,WAAW,CAAC,KAAa,EAAE,SAAiB,EAAE,QAA4B,SAAS;IACjG,IAAI,KAAK,CAAC,WAAW,EAAE,CAAC,UAAU,8BAAgB;QAChD,OAAO,eAAe,CAAC;SACpB,IAAI,KAAK,CAAC,WAAW,EAAE,CAAC,UAAU,sCAAoB;QACzD,OAAO,wBAAwB,CAAC,SAAS,EAAE,KAAK,CAAC,CAAC;SAC/C,IAAI,KAAK,CAAC,WAAW,EAAE,CAAC,UAAU,4BAAe;QACpD,OAAO,cAAc,CAAC;;QAEtB,MAAM,IAAI,KAAK,CAAC,oBAAoB,KAAK,IAAI,CAAC,CAAC;IAEjD,0BAA0B;AAC5B,CAAC;AAED;;;GAGG;AACH,MAAM,UAAU,oBAAoB,CAAC,GAAc;IACjD,IAAI,GAAG,CAAC,OAAO,KAAK,EAAE,CAAC,OAAO,CAAC,aAAa;QAC1C,MAAM,IAAI,KAAK,CAAC,6BAA6B,EAAE,CAAC,OAAO,CAAC,aAAa,SAAS,CAAC,CAAC;IAElF,MAAM,KAAK,GAAG,GAAG,CAAC,MAAM,CAAC,EAAE,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;IACxC,MAAM,SAAS,GAAG,GAAG,CAAC,MAAM,kCAAgB,CAAC;IAC7C,OAAO,WAAW,CAAC,KAAK,EAAE,SAAS,CAAC,CAAC;AACvC,CAAC;AAED,MAAM,iBAAiB,GAAW,QAAQ,CAAC;AAE3C,+CAA+C;AAC/C,MAAM,UAAU,cAAc,CAAC,KAAa,EAAE,kBAA0B;;IACtE,MAAM,eAAe,GAA4B,KAAK,CAAC,KAAK,CAAC,iBAAiB,CAAC,CAAC;IAChF,MAAM,WAAW,GAAY,KAAK,CAAC,MAAM,GAAG,kBAAkB,IAAI,CAAC,MAAA,eAAe,aAAf,eAAe,uBAAf,eAAe,CAAE,MAAM,mCAAI,CAAC,CAAC,GAAG,CAAC,CAAC;IACrG,MAAM,UAAU,GAAG,MAAA,eAAe,aAAf,eAAe,uBAAf,eAAe,CAAG,CAAC,CAAC,mCAAI,GAAG,CAAC;IAC/C,OAAO,CAAC,WAAW,CAAC,CAAC,CAAC,UAAU,CAAC,CAAC,CAAC,UAAU,CAAC,SAAS,CAAC,CAAC,EAAE,kBAAkB,CAAC,GAAG,GAAG,CAAC;AACvF,CAAC;AAED,MAAM;AACN,MAAM,UAAU,WAAW,CAAC,QAAkB;IAC5C,QAAQ,QAAQ,EAAE;QAClB;YACE,OAAO,YAAY,CAAC,gBAAgB,CAAC;QACvC;YACE,OAAO,YAAY,CAAC,gBAAgB,CAAC;QACvC;YACE,OAAO,YAAY,CAAC,oBAAoB,CAAC;QAC3C;YACE,MAAM,IAAI,KAAK,CAAC,yBAAyB,QAAQ,IAAI,CAAC,CAAC;KACxD;AACH,CAAC;AAED;;;;;GAKG;AACH,MAAM,UAAU,qBAAqB,CAAC,IAAkB,EAAE,QAAqB,EAAE,YAAoB,GAAG;IACtG,MAAM,IAAI,GAAG,IAAI,GAAG,CAAS,CAAC,GAAG,IAAI,GAAG,CAAC,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,EAAE,GAAG,QAAQ,CAAC,CAAC,CAAC;IAC3E,IAAI,CAAC,MAAM,CAAC,SAAS,CAAC,CAAC;IAEvB,MAAM,KAAK,GAAa,EAAE,CAAC;IAC3B,MAAM,SAAS,GAAa,EAAE,CAAC;IAC/B,KAAK,MAAM,CAAC,IAAI,IAAI,EAAE;QACpB,KAAK,CAAC,IAAI,CAAC,CAAC,IAAI,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;QACpC,SAAS,CAAC,IAAI,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;KACzC;IACD,0FAA0F;IAC1F,MAAM,KAAK,GAAW,IAAI,MAAM,CAAC,KAAK,CAAC,CAAC;IACxC,MAAM,SAAS,GAAW,IAAI,MAAM,CAAC,SAAS,CAAC,CAAC;IAChD,OAAO,gBAAgB,CAAC,KAAK,EAAE,SAAS,CAAC,GAAG,CAAC,YAAY,CAAC,KAAK,CAAC,GAAG,YAAY,CAAC,SAAS,CAAC,CAAC,CAAC;AAC9F,CAAC;AAED,MAAM,CAAC,MAAM,kBAAkB,GAAoC;IACjE,yBAAc,YAAY,CAAC,oBAAoB,EAAE,IAAI,CAAC;IACtD,2BAAe,YAAY,CAAC,gBAAgB,EAAE,IAAI,CAAC;IACnD,2BAAe,YAAY,CAAC,gBAAgB,EAAE,IAAI,CAAC;CACpD,CAAC;AAOF,+BAA+B;AAC/B,MAAM,UAAU,cAAc,CAAC,IAAkB,EAAE,UAA2B,EAAE,YAAoB,GAAG;IACrG,MAAM,cAAc,GAAuB,UAAU,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE;QAC9D,MAAM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|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"units-handler.d.ts","sourceRoot":"","sources":["units-handler.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAEtC,OAAO,EACgB,QAAQ,EAG7B,YAAY,EAEb,MAAM,iBAAiB,CAAC;AAEzB,iEAAiE;AACjE,qBAAa,YAAY;IACvB,SAAS,CAAC,QAAQ,CAAC,OAAO,EAAE,EAAE,CAAC,MAAM,CAAC;IACtC,SAAS,CAAC,MAAM,EAAE,MAAM,CAAC;IACzB,SAAS,CAAC,SAAS,EAAE,QAAQ,CAAC;IAC9B,SAAS,CAAC,iBAAiB,EAAE,MAAM,CAAC;IACpC,SAAS,CAAC,MAAM,CAAC,QAAQ,CAAC,sBAAsB;;;;MAI9C;IAEF,gBAAuB,oBAAoB,cAGxC;IACH,gBAAuB,gBAAgB,cAAyC;IAChF,gBAAuB,gBAAgB,cAAyC;WAElE,qBAAqB,CAAC,GAAG,EAAE,EAAE,CAAC,MAAM;WAQpC,yBAAyB,CAAC,GAAG,EAAE,EAAE,CAAC,MAAM,EAAE,SAAS,CAAC,EAAE,MAAM;WAW5D,oBAAoB,CAAC,GAAG,EAAE,EAAE,CAAC,MAAM;IAQjD,+BAA+B;WACjB,OAAO,CAAC,GAAG,EAAE,EAAE,CAAC,MAAM,EAAE,QAAQ,EAAE,YAAY,GAAG,IAAI;IAuBnE,SAAS,KAAK,KAAK,IAAI,MAAM,CAAwB;IAErD,SAAS,KAAK,MAAM,IAAI,EAAE,CAAC,MAAM,CAAyB;IAE1D,IAAW,QAAQ,IAAI,QAAQ,CAA2B;IAE1D,IAAW,gBAAgB,IAAI,MAAM,CAAmC;IAExE,IAAW,SAAS,IAAI,MAAM,GAAG,SAAS,CAKzC;IAED,IAAW,OAAO,IAAI,MAAM,CAQ3B;IAED,iCAAiC;IACjC,IAAW,QAAQ,IAAI,MAAM,CAQ5B;IAEM,eAAe,IAAI,MAAM;IA6BzB,sBAAsB,IAAI,OAAO;
|
|
1
|
+
{"version":3,"file":"units-handler.d.ts","sourceRoot":"","sources":["units-handler.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAEtC,OAAO,EACgB,QAAQ,EAG7B,YAAY,EAEb,MAAM,iBAAiB,CAAC;AAEzB,iEAAiE;AACjE,qBAAa,YAAY;IACvB,SAAS,CAAC,QAAQ,CAAC,OAAO,EAAE,EAAE,CAAC,MAAM,CAAC;IACtC,SAAS,CAAC,MAAM,EAAE,MAAM,CAAC;IACzB,SAAS,CAAC,SAAS,EAAE,QAAQ,CAAC;IAC9B,SAAS,CAAC,iBAAiB,EAAE,MAAM,CAAC;IACpC,SAAS,CAAC,MAAM,CAAC,QAAQ,CAAC,sBAAsB;;;;MAI9C;IAEF,gBAAuB,oBAAoB,cAGxC;IACH,gBAAuB,gBAAgB,cAAyC;IAChF,gBAAuB,gBAAgB,cAAyC;WAElE,qBAAqB,CAAC,GAAG,EAAE,EAAE,CAAC,MAAM;WAQpC,yBAAyB,CAAC,GAAG,EAAE,EAAE,CAAC,MAAM,EAAE,SAAS,CAAC,EAAE,MAAM;WAW5D,oBAAoB,CAAC,GAAG,EAAE,EAAE,CAAC,MAAM;IAQjD,+BAA+B;WACjB,OAAO,CAAC,GAAG,EAAE,EAAE,CAAC,MAAM,EAAE,QAAQ,EAAE,YAAY,GAAG,IAAI;IAuBnE,SAAS,KAAK,KAAK,IAAI,MAAM,CAAwB;IAErD,SAAS,KAAK,MAAM,IAAI,EAAE,CAAC,MAAM,CAAyB;IAE1D,IAAW,QAAQ,IAAI,QAAQ,CAA2B;IAE1D,IAAW,gBAAgB,IAAI,MAAM,CAAmC;IAExE,IAAW,SAAS,IAAI,MAAM,GAAG,SAAS,CAKzC;IAED,IAAW,OAAO,IAAI,MAAM,CAQ3B;IAED,iCAAiC;IACjC,IAAW,QAAQ,IAAI,MAAM,CAQ5B;IAEM,eAAe,IAAI,MAAM;IA6BzB,sBAAsB,IAAI,OAAO;IASjC,OAAO,IAAI,OAAO;IAElB,WAAW,IAAI,OAAO;IAEtB,MAAM,IAAI,OAAO;IAEjB,KAAK,IAAI,OAAO;IAEhB,KAAK,IAAI,OAAO;IAEhB,SAAS,IAAI,OAAO;IAEpB,KAAK,IAAI,OAAO;IAEvB,4DAA4D;IAC5D;;OAEG;IACH,SAAS,CAAC,WAAW,IAAI,QAAQ;IAWjC;;;;;;OAMG;IACH,SAAS,CAAC,YAAY,CAAC,cAAc,EAAE,QAAQ,EAAE,SAAS,CAAC,EAAE,MAAM,GAAG,EAAE,CAAC,MAAM;IAsC/E;;;;;;OAMG;WACW,YAAY,CAAC,WAAW,EAAE,EAAE,CAAC,MAAM,GAAG,EAAE,CAAC,MAAM;IAM7D;;;;;OAKG;WACW,kBAAkB,CAAC,KAAK,EAAE,MAAM,GAAG,OAAO;IASxD;;;;;;;;OAQG;WACW,sBAAsB,CAClC,GAAG,EAAE,MAAM,EACX,IAAI,EAAE,MAAM,EACZ,KAAK,EAAE,MAAM,GACZ,EAAE,CAAC,MAAM;gBAYO,GAAG,EAAE,EAAE,CAAC,MAAM;CA+ClC"}
|
|
@@ -9,7 +9,7 @@ export class UnitsHandler {
|
|
|
9
9
|
UnitsHandler.setTags(col, splitterAsFasta);
|
|
10
10
|
}
|
|
11
11
|
static setUnitsToSeparatorColumn(col, separator) {
|
|
12
|
-
if (col.semType !== DG.SEMTYPE.MACROMOLECULE || col.getTag(DG.TAGS.UNITS) !== "separator" /* NOTATION.SEPARATOR */
|
|
12
|
+
if (col.semType !== DG.SEMTYPE.MACROMOLECULE || col.getTag(DG.TAGS.UNITS) !== "separator" /* NOTATION.SEPARATOR */)
|
|
13
13
|
throw new Error(`The column of notation '${"separator" /* NOTATION.SEPARATOR */}' must be '${DG.SEMTYPE.MACROMOLECULE}'.`);
|
|
14
14
|
if (!separator)
|
|
15
15
|
throw new Error(`The column of notation '${"separator" /* NOTATION.SEPARATOR */}' must have the separator tag.`);
|
|
@@ -101,10 +101,12 @@ export class UnitsHandler {
|
|
|
101
101
|
}
|
|
102
102
|
}
|
|
103
103
|
getAlphabetIsMultichar() {
|
|
104
|
-
if (this.notation
|
|
105
|
-
return
|
|
106
|
-
else
|
|
104
|
+
if (this.notation === "helm" /* NOTATION.HELM */)
|
|
105
|
+
return true;
|
|
106
|
+
else if (this.alphabet !== "UN" /* ALPHABET.UN */)
|
|
107
107
|
return false;
|
|
108
|
+
else
|
|
109
|
+
return this.column.getTag(".alphabetIsMultichar" /* TAGS.alphabetIsMultichar */) === 'true';
|
|
108
110
|
}
|
|
109
111
|
isFasta() { return this.notation === "fasta" /* NOTATION.FASTA */; }
|
|
110
112
|
isSeparator() { return this.notation === "separator" /* NOTATION.SEPARATOR */; }
|
|
@@ -213,8 +215,8 @@ export class UnitsHandler {
|
|
|
213
215
|
}
|
|
214
216
|
constructor(col) {
|
|
215
217
|
this._column = col;
|
|
216
|
-
const units = this._column.
|
|
217
|
-
if (units !== null)
|
|
218
|
+
const units = this._column.getTag(DG.TAGS.UNITS);
|
|
219
|
+
if (units !== null && units !== undefined)
|
|
218
220
|
this._units = units;
|
|
219
221
|
else
|
|
220
222
|
throw new Error('Units are not specified in column');
|
|
@@ -222,7 +224,10 @@ export class UnitsHandler {
|
|
|
222
224
|
this._defaultGapSymbol = (this.isFasta()) ? UnitsHandler._defaultGapSymbolsDict.FASTA :
|
|
223
225
|
(this.isHelm()) ? UnitsHandler._defaultGapSymbolsDict.HELM :
|
|
224
226
|
UnitsHandler._defaultGapSymbolsDict.SEPARATOR;
|
|
225
|
-
if (!this.column.tags.has("aligned" /* TAGS.aligned */) || !this.column.tags.has("alphabet" /* TAGS.alphabet */)
|
|
227
|
+
if (!this.column.tags.has("aligned" /* TAGS.aligned */) || !this.column.tags.has("alphabet" /* TAGS.alphabet */) ||
|
|
228
|
+
(!this.column.tags.has(".alphabetIsMultichar" /* TAGS.alphabetIsMultichar */) && !this.isHelm() && this.alphabet === "UN" /* ALPHABET.UN */)) {
|
|
229
|
+
// The following detectors and setters are to be called because the column is likely
|
|
230
|
+
// as the UnitsHandler constructor was called on the column.
|
|
226
231
|
if (this.isFasta()) {
|
|
227
232
|
UnitsHandler.setUnitsToFastaColumn(this.column);
|
|
228
233
|
}
|
|
@@ -247,8 +252,7 @@ export class UnitsHandler {
|
|
|
247
252
|
// }
|
|
248
253
|
if (!this.column.tags.has(".alphabetIsMultichar" /* TAGS.alphabetIsMultichar */)) {
|
|
249
254
|
if (this.isHelm()) {
|
|
250
|
-
|
|
251
|
-
`tag '${".alphabetIsMultichar" /* TAGS.alphabetIsMultichar */}' is mandatory.`);
|
|
255
|
+
this.column.setTag(".alphabetIsMultichar" /* TAGS.alphabetIsMultichar */, 'true');
|
|
252
256
|
}
|
|
253
257
|
else if (['UN'].includes(this.alphabet)) {
|
|
254
258
|
throw new Error(`For column '${this.column.name}' of alphabet '${this.alphabet}' ` +
|
|
@@ -1 +1 @@
|
|
|
1
|
-
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|
|
1
|
+
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@@ -1,27 +1,38 @@
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1
1
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import * as DG from 'datagrok-api/dg';
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2
2
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import { IViewer } from './viewer';
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3
3
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import { Observable } from 'rxjs';
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4
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-
import { MjolnirPointerEvent } from 'mjolnir.js';
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5
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-
import { PickingInfo } from '@deck.gl/core/typed';
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6
4
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export type NodeStyleType = {
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7
5
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[propName: string]: any;
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8
6
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};
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9
7
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export type StylesType = {
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10
8
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[nodeName: string]: NodeStyleType;
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11
9
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};
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12
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-
export
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13
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-
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14
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-
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15
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-
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16
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17
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-
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18
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-
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19
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-
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20
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-
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21
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-
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22
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-
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23
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-
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24
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-
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10
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+
export declare enum RepresentationType {
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11
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+
Cartoon = "cartoon",
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12
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+
Backbone = "backbone",
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13
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+
BallAndStick = "ball+stick",
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14
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+
Licorice = "licorice",
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15
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+
Hyperball = "hyperball",
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16
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+
Surface = "surface"
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17
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+
}
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18
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+
export declare const NglPropsDefault: {
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19
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+
pdb: string | null;
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20
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+
pdbTag: string | null;
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21
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+
ligandColumnName: string | null;
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22
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+
representation: RepresentationType;
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23
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+
showSelectedRowsLigands: boolean;
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24
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+
showCurrentRowLigand: boolean;
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25
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+
showMouseOverRowLigand: boolean;
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26
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+
};
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27
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+
export type NglProps = Required<typeof NglPropsDefault>;
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28
|
+
export interface INglViewer extends IViewer {
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29
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+
setOptions(options: Partial<NglProps>): void;
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30
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+
get onAfterBuildView(): Observable<void>;
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31
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+
}
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|
32
|
+
declare module 'datagrok-api/dg' {
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|
33
|
+
interface DataFramePlotHelper {
|
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34
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+
fromType(viewerType: 'NGL', options: Partial<NglProps>): Promise<DG.Viewer & INglViewer>;
|
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35
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+
}
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25
36
|
}
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26
37
|
export type NglGlTask = {
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27
38
|
name: string;
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@@ -1 +1 @@
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|
1
|
-
{"version":3,"file":"ngl-gl-viewer.d.ts","sourceRoot":"","sources":["ngl-gl-viewer.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAEtC,OAAO,EAAC,OAAO,EAAC,MAAM,UAAU,CAAC;AACjC,OAAO,EAAC,UAAU,EAAC,MAAM,MAAM,CAAC;
|
|
1
|
+
{"version":3,"file":"ngl-gl-viewer.d.ts","sourceRoot":"","sources":["ngl-gl-viewer.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAEtC,OAAO,EAAC,OAAO,EAAC,MAAM,UAAU,CAAC;AACjC,OAAO,EAAC,UAAU,EAAC,MAAM,MAAM,CAAC;AAKhC,MAAM,MAAM,aAAa,GAAG;IAAE,CAAC,QAAQ,EAAE,MAAM,GAAG,GAAG,CAAA;CAAE,CAAC;AACxD,MAAM,MAAM,UAAU,GAAG;IAAE,CAAC,QAAQ,EAAE,MAAM,GAAG,aAAa,CAAA;CAAE,CAAC;AAE/D,oBAAY,kBAAkB;IAC5B,OAAO,YAAY;IACnB,QAAQ,aAAa;IACrB,YAAY,eAAe;IAC3B,QAAQ,aAAa;IACrB,SAAS,cAAc;IACvB,OAAO,YAAY;CACpB;AAED,eAAO,MAAM,eAAe;SAErB,MAAM,GAAG,IAAI;YACV,MAAM,GAAG,IAAI;sBACH,MAAM,GAAG,IAAI;oBAGf,kBAAkB;6BAIT,OAAO;0BACV,OAAO;4BACL,OAAO;CAC9B,CAAC;AAGJ,MAAM,MAAM,QAAQ,GAAG,QAAQ,CAAC,OAAO,eAAe,CAAC,CAAC;AAExD,MAAM,WAAW,UAAW,SAAQ,OAAO;IACzC,UAAU,CAAC,OAAO,EAAE,OAAO,CAAC,QAAQ,CAAC,GAAG,IAAI,CAAC;IAE7C,IAAI,gBAAgB,IAAI,UAAU,CAAC,IAAI,CAAC,CAAC;CAC1C;AAED,OAAO,QAAQ,iBAAiB,CAAC;IAC/B,UAAU,mBAAmB;QAC3B,QAAQ,CAAC,UAAU,EAAE,KAAK,EAAE,OAAO,EAAE,OAAO,CAAC,QAAQ,CAAC,GAAG,OAAO,CAAC,EAAE,CAAC,MAAM,GAAG,UAAU,CAAC,CAAC;KAC1F;CACF;AAGD,MAAM,MAAM,SAAS,GAAG;IACtB,IAAI,EAAE,MAAM,CAAC;IACb,SAAS,EAAE,MAAM,CAAC;IAClB,KAAK,EAAE;QAAE,CAAC,QAAQ,EAAE,MAAM,GAAG,GAAG,CAAA;KAAE,CAAC;IACnC,aAAa,EAAE,CAAC,MAAM,EAAE,iBAAiB,KAAK,OAAO,CAAC,IAAI,CAAC,CAAA;CAC5D,CAAC;AAEF,8BAAsB,gBAAgB;IACpC,OAAc,UAAU,EAAE;QAAE,IAAI,EAAE,MAAM,CAAC;QAAC,IAAI,EAAE,GAAG,CAAA;KAAE,CAGnD;IAEF;;OAEG;IACH,QAAQ,CAAC,MAAM,CAAC,IAAI,EAAE,SAAS,EAAE,GAAG,CAAC,EAAE,MAAM,GAAG,GAAG,IAAI;IAEvD;;;;;OAKG;IACH,QAAQ,CAAC,gBAAgB,CACvB,IAAI,EAAE,wBAAwB,EAAE,EAAE,EAAE,EAAE,CAAC,IAAI,EAAE,KAAK,EAAE,EAAE,CAAC,QAAQ,EAAE,MAAM,EAAE,iBAAiB,GAAG,IAAI;CACpG;AAGD,wBAAsB,eAAe,IAAI,OAAO,CAAC,gBAAgB,CAAC,CAOjE"}
|
|
@@ -8,6 +8,29 @@ var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, ge
|
|
|
8
8
|
});
|
|
9
9
|
};
|
|
10
10
|
import * as DG from 'datagrok-api/dg';
|
|
11
|
+
export var RepresentationType;
|
|
12
|
+
(function (RepresentationType) {
|
|
13
|
+
RepresentationType["Cartoon"] = "cartoon";
|
|
14
|
+
RepresentationType["Backbone"] = "backbone";
|
|
15
|
+
RepresentationType["BallAndStick"] = "ball+stick";
|
|
16
|
+
RepresentationType["Licorice"] = "licorice";
|
|
17
|
+
RepresentationType["Hyperball"] = "hyperball";
|
|
18
|
+
RepresentationType["Surface"] = "surface";
|
|
19
|
+
})(RepresentationType || (RepresentationType = {}));
|
|
20
|
+
export const NglPropsDefault = new class {
|
|
21
|
+
constructor() {
|
|
22
|
+
// -- Data --
|
|
23
|
+
this.pdb = null;
|
|
24
|
+
this.pdbTag = null;
|
|
25
|
+
this.ligandColumnName = null;
|
|
26
|
+
// -- Style --
|
|
27
|
+
this.representation = RepresentationType.Cartoon;
|
|
28
|
+
// -- Behaviour --
|
|
29
|
+
this.showSelectedRowsLigands = false;
|
|
30
|
+
this.showCurrentRowLigand = true;
|
|
31
|
+
this.showMouseOverRowLigand = true;
|
|
32
|
+
}
|
|
33
|
+
}();
|
|
11
34
|
export class NglGlServiceBase {
|
|
12
35
|
}
|
|
13
36
|
NglGlServiceBase.noneSource = {
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"ngl-gl-viewer.js","sourceRoot":"","sources":["ngl-gl-viewer.ts"],"names":[],"mappings":";;;;;;;;;AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;
|
|
1
|
+
{"version":3,"file":"ngl-gl-viewer.js","sourceRoot":"","sources":["ngl-gl-viewer.ts"],"names":[],"mappings":";;;;;;;;;AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAWtC,MAAM,CAAN,IAAY,kBAOX;AAPD,WAAY,kBAAkB;IAC5B,yCAAmB,CAAA;IACnB,2CAAqB,CAAA;IACrB,iDAA2B,CAAA;IAC3B,2CAAqB,CAAA;IACrB,6CAAuB,CAAA;IACvB,yCAAmB,CAAA;AACrB,CAAC,EAPW,kBAAkB,KAAlB,kBAAkB,QAO7B;AAED,MAAM,CAAC,MAAM,eAAe,GAAG,IAAI;IAAA;QACjC,aAAa;QACb,QAAG,GAAkB,IAAI,CAAC;QAC1B,WAAM,GAAkB,IAAI,CAAC;QAC7B,qBAAgB,GAAkB,IAAI,CAAC;QAEvC,cAAc;QACd,mBAAc,GAAuB,kBAAkB,CAAC,OAAO,CAAC;QAEhE,kBAAkB;QAElB,4BAAuB,GAAY,KAAK,CAAC;QACzC,yBAAoB,GAAY,IAAI,CAAC;QACrC,2BAAsB,GAAY,IAAI,CAAC;IACzC,CAAC;CAAA,EAAE,CAAC;AAyBJ,MAAM,OAAgB,gBAAgB;;AACtB,2BAAU,GAAgC;IACtD,IAAI,EAAE,OAAO;IACb,IAAI,EAAE,EAAC,IAAI,EAAE,MAAM,EAAE,aAAa,EAAE,CAAC,EAAE,QAAQ,EAAE,EAAE,EAAC;CACrD,CAAC;AAkBJ,MAAM,UAAgB,eAAe;;QACnC,MAAM,QAAQ,GAAG,EAAE,CAAC,IAAI,CAAC,IAAI,CAAC,EAAC,OAAO,EAAE,oBAAoB,EAAE,IAAI,EAAE,iBAAiB,EAAC,CAAC,CAAC;QACxF,IAAI,QAAQ,CAAC,MAAM,KAAK,CAAC;YACvB,MAAM,IAAI,KAAK,CAAC,oEAAoE,CAAC,CAAC;QAExF,MAAM,GAAG,GAAqB,CAAC,MAAM,QAAQ,CAAC,CAAC,CAAC,CAAC,OAAO,EAAE,CAAC,IAAI,EAAE,CAAC,CAAC,mBAAmB,EAAsB,CAAC;QAC7G,OAAO,GAAG,CAAC;IACb,CAAC;CAAA"}
|