@datagrok-libraries/bio 5.28.1 → 5.28.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
package/package.json
CHANGED
package/src/trees/index.d.ts
CHANGED
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@@ -8,6 +8,11 @@ export interface NodeCuttedType extends NodeType {
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cuttedLeafNameList: string[];
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cuttedChildren?: NodeType[];
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}
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11
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+
export type ClusterMatrix = {
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12
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mergeRow1: Int32Array;
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13
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mergeRow2: Int32Array;
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14
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heightsResult: Float32Array;
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15
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};
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export type TreeLeafDict = {
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[nodeName: string]: NodeType;
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};
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package/src/trees/index.d.ts.map
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["index.ts"],"names":[],"mappings":"AAIA,kHAAkH;AAClH,MAAM,WAAW,QAAQ;IACvB,IAAI,EAAE,MAAM,CAAC;IACb,aAAa,CAAC,EAAE,MAAM,CAAC;IACvB,QAAQ,CAAC,EAAE,QAAQ,EAAE,CAAC;CACvB;AAED,MAAM,WAAW,cAAe,SAAQ,QAAQ;IAC9C,kBAAkB,EAAE,MAAM,EAAE,CAAC;IAC7B,cAAc,CAAC,EAAE,QAAQ,EAAE,CAAC;CAC7B;AAED,MAAM,MAAM,YAAY,GAAG;IAAE,CAAC,QAAQ,EAAE,MAAM,GAAG,QAAQ,CAAA;CAAE,CAAC;AAC5D,MAAM,MAAM,YAAY,GAAG;IAAE,CAAC,QAAQ,EAAE,MAAM,GAAG,MAAM,CAAA;CAAE,CAAC;AAC1D,MAAM,MAAM,gBAAgB,GAAG,CAAC,QAAQ,EAAE,MAAM,KAAK,IAAI,CAAC;AAE1D,oBAAY,IAAI;IACd,MAAM,YAAY;IAClB,WAAW,iBAAiB;IAC5B,OAAO,oBAAoB;IAC3B,oBAAoB,sBAAsB;CAC3C;AAED,wBAAgB,MAAM,CAAC,IAAI,EAAE,QAAQ,WAEpC;AAED,oBAAY,cAAc;IACxB,IAAI,SAAS;IACb,KAAK,UAAU;IACf,OAAO,YAAY;IACnB,SAAS,cAAc;IACvB,SAAS,cAAc;CACxB;AAED,oBAAY,cAAc;IACxB,SAAS,cAAc;IACvB,SAAS,cAAc;CACxB;AAED,oBAAY,aAAa;IACvB,MAAM,WAAW;IACjB,QAAQ,aAAa;IACrB,OAAO,YAAY;IACnB,QAAQ,aAAa;IACrB,QAAQ,aAAa;IACrB,MAAM,WAAW;IACjB,IAAI,SAAS;CACd;AAGD,eAAO,MAAM,kBAAkB,EAAE;IAAE,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAAA;CAMxD,CAAC"}
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1
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+
{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["index.ts"],"names":[],"mappings":"AAIA,kHAAkH;AAClH,MAAM,WAAW,QAAQ;IACvB,IAAI,EAAE,MAAM,CAAC;IACb,aAAa,CAAC,EAAE,MAAM,CAAC;IACvB,QAAQ,CAAC,EAAE,QAAQ,EAAE,CAAC;CACvB;AAED,MAAM,WAAW,cAAe,SAAQ,QAAQ;IAC9C,kBAAkB,EAAE,MAAM,EAAE,CAAC;IAC7B,cAAc,CAAC,EAAE,QAAQ,EAAE,CAAC;CAC7B;AAED,MAAM,MAAM,aAAa,GAAG;IAC1B,SAAS,EAAC,UAAU,CAAC;IACrB,SAAS,EAAC,UAAU,CAAC;IACrB,aAAa,EAAC,YAAY,CAAC;CAC5B,CAAA;AAED,MAAM,MAAM,YAAY,GAAG;IAAE,CAAC,QAAQ,EAAE,MAAM,GAAG,QAAQ,CAAA;CAAE,CAAC;AAC5D,MAAM,MAAM,YAAY,GAAG;IAAE,CAAC,QAAQ,EAAE,MAAM,GAAG,MAAM,CAAA;CAAE,CAAC;AAC1D,MAAM,MAAM,gBAAgB,GAAG,CAAC,QAAQ,EAAE,MAAM,KAAK,IAAI,CAAC;AAE1D,oBAAY,IAAI;IACd,MAAM,YAAY;IAClB,WAAW,iBAAiB;IAC5B,OAAO,oBAAoB;IAC3B,oBAAoB,sBAAsB;CAC3C;AAED,wBAAgB,MAAM,CAAC,IAAI,EAAE,QAAQ,WAEpC;AAED,oBAAY,cAAc;IACxB,IAAI,SAAS;IACb,KAAK,UAAU;IACf,OAAO,YAAY;IACnB,SAAS,cAAc;IACvB,SAAS,cAAc;CACxB;AAED,oBAAY,cAAc;IACxB,SAAS,cAAc;IACvB,SAAS,cAAc;CACxB;AAED,oBAAY,aAAa;IACvB,MAAM,WAAW;IACjB,QAAQ,aAAa;IACrB,OAAO,YAAY;IACnB,QAAQ,aAAa;IACrB,QAAQ,aAAa;IACrB,MAAM,WAAW;IACjB,IAAI,SAAS;CACd;AAGD,eAAO,MAAM,kBAAkB,EAAE;IAAE,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAAA;CAMxD,CAAC"}
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package/src/trees/index.js.map
CHANGED
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@@ -1 +1 @@
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1
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{"version":3,"file":"index.js","sourceRoot":"","sources":["index.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;
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1
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{"version":3,"file":"index.js","sourceRoot":"","sources":["index.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAwBtC,MAAM,CAAN,IAAY,IAKX;AALD,WAAY,IAAI;IACd,0BAAkB,CAAA;IAClB,oCAA4B,CAAA;IAC5B,mCAA2B,CAAA;IAC3B,kDAA0C,CAAA;AAC5C,CAAC,EALW,IAAI,KAAJ,IAAI,QAKf;AAED,MAAM,UAAU,MAAM,CAAC,IAAc;IACnC,OAAO,CAAC,IAAI,CAAC,QAAQ,IAAI,IAAI,CAAC,QAAQ,CAAC,MAAM,IAAI,CAAC,CAAC;AACrD,CAAC;AAED,MAAM,CAAN,IAAY,cAMX;AAND,WAAY,cAAc;IACxB,+BAAa,CAAA;IACb,iCAAe,CAAA;IACf,qCAAmB,CAAA;IACnB,yCAAuB,CAAA;IACvB,yCAAuB,CAAA;AACzB,CAAC,EANW,cAAc,KAAd,cAAc,QAMzB;AAED,MAAM,CAAN,IAAY,cAGX;AAHD,WAAY,cAAc;IACxB,yCAAuB,CAAA;IACvB,yCAAuB,CAAA;AACzB,CAAC,EAHW,cAAc,KAAd,cAAc,QAGzB;AAED,MAAM,CAAN,IAAY,aAQX;AARD,WAAY,aAAa;IACvB,kCAAiB,CAAA;IACjB,sCAAqB,CAAA;IACrB,oCAAmB,CAAA;IACnB,sCAAqB,CAAA;IACrB,sCAAqB,CAAA;IACrB,kCAAiB,CAAA;IACjB,8BAAa,CAAA;AACf,CAAC,EARW,aAAa,KAAb,aAAa,QAQxB;AAGD,MAAM,CAAC,MAAM,kBAAkB,GAA+B;IAC5D,CAAC,cAAc,CAAC,IAAI,CAAC,EAAE,EAAE,CAAC,KAAK,CAAC,kBAAkB,CAAC,EAAE,CAAC;IACtD,CAAC,cAAc,CAAC,KAAK,CAAC,EAAE,EAAE,CAAC,KAAK,CAAC,kBAAkB,CAAC,EAAE,CAAC;IACvD,CAAC,cAAc,CAAC,OAAO,CAAC,EAAE,EAAE,CAAC,KAAK,CAAC,UAAU;IAC7C,CAAC,cAAc,CAAC,SAAS,CAAC,EAAE,EAAE,CAAC,KAAK,CAAC,aAAa;IAClD,CAAC,cAAc,CAAC,SAAS,CAAC,EAAE,EAAE,CAAC,KAAK,CAAC,YAAY;CAClD,CAAC"}
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@@ -1,5 +1,5 @@
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import * as DG from 'datagrok-api/dg';
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2
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-
import { DistanceMetric, NodeCuttedType, NodeType } from './index';
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2
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+
import { ClusterMatrix, DistanceMetric, NodeCuttedType, NodeType } from './index';
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import { DistanceMatrix } from './distance-matrix';
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export interface ITreeHelper {
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/** Generates data frame with row per node, parent relation, distance, annotation
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@@ -44,6 +44,7 @@ export interface ITreeHelper {
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hierarchicalClustering(df: DG.DataFrame, distance: string, linkage: string): Promise<NodeType>;
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hierarchicalClusteringByDistance(distance: DistanceMatrix, linkage: string): Promise<NodeType>;
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calcDistanceMatrix(df: DG.DataFrame, colNames: string[], distanceMetric?: DistanceMetric): Promise<DistanceMatrix | null>;
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parseClusterMatrix(clusterMatrix: ClusterMatrix): NodeType;
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}
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export declare function getTreeHelper(): Promise<ITreeHelper>;
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//# sourceMappingURL=tree-helper.d.ts.map
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@@ -1 +1 @@
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1
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{"version":3,"file":"tree-helper.d.ts","sourceRoot":"","sources":["tree-helper.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAEtC,OAAO,EAAC,cAAc,EAAE,cAAc,EAAE,QAAQ,EAAC,MAAM,SAAS,CAAC;
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{"version":3,"file":"tree-helper.d.ts","sourceRoot":"","sources":["tree-helper.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAEtC,OAAO,EAAC,aAAa,EAAE,cAAc,EAAE,cAAc,EAAE,QAAQ,EAAC,MAAM,SAAS,CAAC;AAChF,OAAO,EAAC,cAAc,EAAC,MAAM,mBAAmB,CAAC;AAEjD,MAAM,WAAW,WAAW;IAC1B;;;;;OAKG;IACH,UAAU,CAAC,MAAM,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,EAAE,UAAU,CAAC,EAAE,MAAM,GAAG,EAAE,CAAC,SAAS,CAAC;IAE5E,QAAQ,CAAC,IAAI,EAAE,QAAQ,GAAG,IAAI,GAAG,MAAM,CAAC;IAExC,WAAW,CAAC,KAAK,SAAS,QAAQ,EAAE,IAAI,EAAE,KAAK,GAAG,IAAI,GAAG,KAAK,EAAE,CAAC;IAEjE,WAAW,CAAC,KAAK,SAAS,QAAQ,EAAE,IAAI,EAAE,KAAK,GAAG,IAAI,GAAG,KAAK,EAAE,CAAC;IAEjE;;OAEG;IACH,kBAAkB,CAAC,IAAI,EAAE,QAAQ,GAAG,IAAI,EAAE,MAAM,EAAE;QAAE,CAAC,IAAI,EAAE,MAAM,GAAG,GAAG,CAAA;KAAE,GAAG,QAAQ,GAAG,IAAI,CAAC;IAE5F;;OAEG;IACH,gBAAgB,CAAC,KAAK,SAAS,QAAQ,EAAE,IAAI,EAAE,KAAK,GAAG,IAAI,EAAE,MAAM,EAAE;QAAE,CAAC,IAAI,EAAE,MAAM,GAAG,GAAG,CAAA;KAAE,GAAG,KAAK,EAAE,CAAC;IAEvG,eAAe,CAAC,IAAI,EAAE,QAAQ,GAAG,IAAI,EAAE,SAAS,EAAE,MAAM,EAAE,aAAa,CAAC,EAAE,MAAM,GAAG,QAAQ,EAAE,CAAC;IAE9F,aAAa,CACX,IAAI,EAAE,QAAQ,GAAG,IAAI,EAAE,SAAS,EAAE,MAAM,EAAE,UAAU,CAAC,EAAE,OAAO,EAAE,aAAa,CAAC,EAAE,MAAM,GAAG,QAAQ,GAAG,IAAI,CAAC;IAE3G;;OAEG;IACH,YAAY,CAAC,IAAI,EAAE,QAAQ,GAAG,IAAI,EAAE,IAAI,EAAE,EAAE,CAAC,IAAI,EAAE,WAAW,CAAC,EAAE,MAAM,GAAG,CAAC,QAAQ,EAAE,MAAM,EAAE,CAAC,CAAC;IAE/F,YAAY,CAAC,IAAI,EAAE,cAAc,EAC/B,MAAM,EAAE,EAAE,CAAC,SAAS,EAAE,WAAW,EAAE,MAAM,GAAG,IAAI,EAAE,cAAc,EAAE,MAAM,EAAE,EAAE,CAAC,EAAE,GAAG,GAAG,IAAI,CAAC;IAE5F;;OAEG;IACH,aAAa,CAAC,IAAI,EAAE,cAAc,EAAE,SAAS,EAAE,EAAE,CAAC,SAAS,EAAE,cAAc,EAAE,MAAM,EAAE,WAAW,CAAC,EAAE,MAAM,GAAG,IAAI,CAAC;IAEjH;;OAEG;IACH,aAAa,CAAC,IAAI,EAAE,QAAQ,EAAE,SAAS,EAAE,MAAM,EAAE,MAAM,EAAE,EAAE,CAAC,SAAS,EACnE,WAAW,EAAE,MAAM,EAAE,cAAc,EAAE,MAAM,EAAE,EAAE,CAAC,EAAE,GAAG,GAAG,IAAI,CAAC;IAE/D,kFAAkF;IAClF,YAAY,CAAC,IAAI,EAAE,MAAM,GAAG,QAAQ,CAAC;IAErC,sBAAsB,CAAC,EAAE,EAAE,EAAE,CAAC,SAAS,EAAE,QAAQ,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,GAAG,OAAO,CAAC,QAAQ,CAAC,CAAC;IAE/F,gCAAgC,CAAC,QAAQ,EAAE,cAAc,EAAE,OAAO,EAAE,MAAM,GAAG,OAAO,CAAC,QAAQ,CAAC,CAAC;IAE/F,kBAAkB,CAAC,EAAE,EAAE,EAAE,CAAC,SAAS,EAAE,QAAQ,EAAE,MAAM,EAAE,EACrD,cAAc,CAAC,EAAE,cAAc,GAAG,OAAO,CAAC,cAAc,GAAG,IAAI,CAAC,CAAC;IAEnE,kBAAkB,CAAC,aAAa,EAAC,aAAa,GAAG,QAAQ,CAAC;CAC3D;AAED,wBAAsB,aAAa,IAAI,OAAO,CAAC,WAAW,CAAC,CAO1D"}
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{"version":3,"file":"tree-helper.js","sourceRoot":"","sources":["tree-helper.ts"],"names":[],"mappings":";;;;;;;;;AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;
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{"version":3,"file":"tree-helper.js","sourceRoot":"","sources":["tree-helper.ts"],"names":[],"mappings":";;;;;;;;;AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAmEtC,MAAM,UAAgB,aAAa;;QACjC,MAAM,QAAQ,GAAG,EAAE,CAAC,IAAI,CAAC,IAAI,CAAC,EAAC,OAAO,EAAE,YAAY,EAAE,IAAI,EAAE,eAAe,EAAC,CAAC,CAAC;QAC9E,IAAI,QAAQ,CAAC,MAAM,KAAK,CAAC;YACvB,MAAM,IAAI,KAAK,CAAC,8DAA8D,CAAC,CAAC;QAElF,MAAM,GAAG,GAAgB,CAAC,MAAM,QAAQ,CAAC,CAAC,CAAC,CAAC,OAAO,EAAE,CAAC,IAAI,EAAE,CAAC,CAAC,mBAAmB,EAAiB,CAAC;QACnG,OAAO,GAAG,CAAC;IACb,CAAC;CAAA"}
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