@datagrok-libraries/bio 5.28.0 → 5.28.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/package.json +1 -1
- package/src/trees/distance-matrix.d.ts.map +1 -1
- package/src/trees/distance-matrix.js +8 -2
- package/src/trees/distance-matrix.js.map +1 -1
- package/src/trees/index.d.ts +5 -0
- package/src/trees/index.d.ts.map +1 -1
- package/src/trees/index.js.map +1 -1
- package/src/trees/tree-helper.d.ts +2 -1
- package/src/trees/tree-helper.d.ts.map +1 -1
- package/src/trees/tree-helper.js.map +1 -1
package/package.json
CHANGED
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"distance-matrix.d.ts","sourceRoot":"","sources":["distance-matrix.ts"],"names":[],"mappings":"AAIA,2FAA2F;AAC3F,qBAAa,cAAc;IACzB,KAAK,EAAE,YAAY,CAAC;IACpB,KAAK,EAAE,MAAM,CAAC;IAEd,IAAI,IAAI,IAAI,YAAY,CAAuB;IAE/C,IAAI,IAAI,IAAI,MAAM,CAAuB;IAEzC;;;OAGG;gBACS,IAAI,CAAC,EAAE,YAAY,EAAE,IAAI,CAAC,EAAE,MAAM;IAqB9C,OAAO,CAAC,YAAY;IAKpB,GAAG,CAAC,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM;IASxB,GAAG,CAAC,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM;IAIvC,MAAM,CAAC,IAAI,CAAC,IAAI,EAAE,IAAI,EAAE,SAAS,CAAC,IAAI,CAAC,EAAE,MAAM,EAAE,CAAC,CAAC,EAAE,IAAI,EAAE,CAAC,EAAE,IAAI,KAAK,MAAM,GAAG,cAAc;IAWvF,MAAM;IAMN,GAAG,CAAC,KAAK,EAAE,cAAc;IAQzB,IAAI;IAMJ,SAAS;
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1
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+
{"version":3,"file":"distance-matrix.d.ts","sourceRoot":"","sources":["distance-matrix.ts"],"names":[],"mappings":"AAIA,2FAA2F;AAC3F,qBAAa,cAAc;IACzB,KAAK,EAAE,YAAY,CAAC;IACpB,KAAK,EAAE,MAAM,CAAC;IAEd,IAAI,IAAI,IAAI,YAAY,CAAuB;IAE/C,IAAI,IAAI,IAAI,MAAM,CAAuB;IAEzC;;;OAGG;gBACS,IAAI,CAAC,EAAE,YAAY,EAAE,IAAI,CAAC,EAAE,MAAM;IAqB9C,OAAO,CAAC,YAAY;IAKpB,GAAG,CAAC,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM;IASxB,GAAG,CAAC,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM;IAIvC,MAAM,CAAC,IAAI,CAAC,IAAI,EAAE,IAAI,EAAE,SAAS,CAAC,IAAI,CAAC,EAAE,MAAM,EAAE,CAAC,CAAC,EAAE,IAAI,EAAE,CAAC,EAAE,IAAI,KAAK,MAAM,GAAG,cAAc;IAWvF,MAAM;IAMN,GAAG,CAAC,KAAK,EAAE,cAAc;IAQzB,IAAI;IAMJ,SAAS;CAajB;AAED,MAAM,WAAW,SAAS,CAAC,IAAI;IAC7B,CAAC,KAAK,EAAE,MAAM,GAAG,IAAI,CAAC;IACtB,IAAI,MAAM,IAAI,MAAM,CAAC;CACtB"}
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@@ -72,8 +72,14 @@ export class DistanceMatrix {
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}
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//normilze distance matrix in place
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normalize() {
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-
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-
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75
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+
let min = this._data[0];
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+
let max = this._data[0];
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+
for (let i = 0; i < this._data.length; i++) {
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if (this._data[i] < min)
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min = this._data[i];
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if (this._data[i] > max)
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max = this._data[i];
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+
}
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const range = max - min;
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for (let i = 0; i < this._data.length; i++)
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this._data[i] = range === 0 ? this._data[i] - min : (this._data[i] - min) / (max - min);
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"distance-matrix.js","sourceRoot":"","sources":["distance-matrix.ts"],"names":[],"mappings":"AAIA,2FAA2F;AAC3F,MAAM,OAAO,cAAc;IAIzB,IAAI,IAAI,KAAmB,OAAO,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC;IAE/C,IAAI,IAAI,KAAa,OAAO,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC;IAEzC;;;OAGG;IACH,YAAY,IAAmB,EAAE,IAAa;QAC5C,IAAI,IAAI,IAAI,SAAS,EAAE;YACrB,IAAI,IAAI,IAAI,SAAS;gBAAE,MAAM,IAAI,KAAK,CAAC,4CAA4C,CAAC,CAAC;YAErF,IAAI,CAAC,KAAK,GAAG,IAAK,CAAC;YACnB,IAAI,CAAC,KAAK,GAAG,CAAC,CAAC,GAAG,IAAI,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC,GAAG,CAAC,CAAC;YAChE,IAAI,IAAI,CAAC,KAAK,IAAI,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC;gBACtC,MAAM,IAAI,KAAK,CAAC,uBAAuB,IAAI,CAAC,KAAK,CAAC,MAAM,8BAA8B,IAAI,CAAC,KAAK,EAAE,CAAC,CAAC;SACvG;aAAM;YACL,IAAI,CAAC,KAAK,GAAG,IAAI,CAAC;YAClB,MAAM,UAAU,GAAW,IAAI,GAAG,CAAC,IAAI,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC;YACjD,IAAI,IAAI,EAAE;gBACR,IAAI,IAAI,CAAC,MAAM,IAAI,UAAU;oBAC3B,MAAM,IAAI,KAAK,CAAC,0CAA0C,IAAI,yBAAyB,UAAU,GAAG,CAAC,CAAC;gBACxG,IAAI,CAAC,KAAK,GAAG,IAAI,CAAC;aACnB;iBAAM;gBACL,IAAI,CAAC,KAAK,GAAG,IAAI,YAAY,CAAC,UAAU,CAAC,CAAC;aAC3C;SACF;IACH,CAAC;IAEO,YAAY,CAAC,CAAS,EAAE,CAAS;QACvC,IAAI,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC;YAAE,MAAM,IAAI,KAAK,CAAC,uBAAuB,CAAC,CAAC;QACvD,OAAO,IAAI,CAAC,KAAK,GAAG,CAAC,GAAG,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC;IAClE,CAAC;IAED,GAAG,CAAC,CAAS,EAAE,CAAS;QACtB,IAAI,CAAC,IAAI,CAAC;YACR,OAAO,CAAC,CAAC;aACN,IAAI,CAAC,GAAG,CAAC;YACZ,OAAO,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;;YAE3C,OAAO,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;IAC/C,CAAC;IAED,GAAG,CAAC,CAAS,EAAE,CAAS,EAAE,KAAa;QACrC,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,KAAK,CAAC;IAC9C,CAAC;IAED,MAAM,CAAC,IAAI,CAAO,IAAqB,EAAE,MAAoC;QAC3E,MAAM,IAAI,GAAW,IAAI,CAAC,MAAM,CAAC;QACjC,MAAM,GAAG,GAAG,IAAI,cAAc,CAAC,SAAS,EAAE,IAAI,CAAC,CAAC;QAChD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,EAAE,CAAC,EAAE,EAAE;YAC7B,KAAK,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,EAAE,CAAC,EAAE;gBAC/B,GAAG,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC,EAAE,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;SAC3C;QACD,OAAO,GAAG,CAAC;IACb,CAAC;IAED,wCAAwC;IACjC,MAAM;QACX,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,MAAM,EAAE,CAAC,EAAE;YACxC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,GAAG,SAAA,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,EAAI,CAAC,CAAA,CAAC;IACvC,CAAC;IAED,2CAA2C;IACpC,GAAG,CAAC,KAAqB;QAC9B,IAAI,IAAI,CAAC,KAAK,KAAK,KAAK,CAAC,KAAK;YAC5B,MAAM,IAAI,KAAK,CAAC,gDAAgD,IAAI,CAAC,KAAK,iBAAiB,KAAK,CAAC,KAAK,EAAE,CAAC,CAAC;QAC5G,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,MAAM,EAAE,CAAC,EAAE;YACxC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,IAAI,KAAK,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;IACpC,CAAC;IAED,4CAA4C;IACrC,IAAI;QACT,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,MAAM,EAAE,CAAC,EAAE;YACxC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC;IAC7C,CAAC;IAED,mCAAmC;IAC5B,SAAS;QACd,
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1
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+
{"version":3,"file":"distance-matrix.js","sourceRoot":"","sources":["distance-matrix.ts"],"names":[],"mappings":"AAIA,2FAA2F;AAC3F,MAAM,OAAO,cAAc;IAIzB,IAAI,IAAI,KAAmB,OAAO,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC;IAE/C,IAAI,IAAI,KAAa,OAAO,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC;IAEzC;;;OAGG;IACH,YAAY,IAAmB,EAAE,IAAa;QAC5C,IAAI,IAAI,IAAI,SAAS,EAAE;YACrB,IAAI,IAAI,IAAI,SAAS;gBAAE,MAAM,IAAI,KAAK,CAAC,4CAA4C,CAAC,CAAC;YAErF,IAAI,CAAC,KAAK,GAAG,IAAK,CAAC;YACnB,IAAI,CAAC,KAAK,GAAG,CAAC,CAAC,GAAG,IAAI,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC,GAAG,CAAC,CAAC;YAChE,IAAI,IAAI,CAAC,KAAK,IAAI,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC;gBACtC,MAAM,IAAI,KAAK,CAAC,uBAAuB,IAAI,CAAC,KAAK,CAAC,MAAM,8BAA8B,IAAI,CAAC,KAAK,EAAE,CAAC,CAAC;SACvG;aAAM;YACL,IAAI,CAAC,KAAK,GAAG,IAAI,CAAC;YAClB,MAAM,UAAU,GAAW,IAAI,GAAG,CAAC,IAAI,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC;YACjD,IAAI,IAAI,EAAE;gBACR,IAAI,IAAI,CAAC,MAAM,IAAI,UAAU;oBAC3B,MAAM,IAAI,KAAK,CAAC,0CAA0C,IAAI,yBAAyB,UAAU,GAAG,CAAC,CAAC;gBACxG,IAAI,CAAC,KAAK,GAAG,IAAI,CAAC;aACnB;iBAAM;gBACL,IAAI,CAAC,KAAK,GAAG,IAAI,YAAY,CAAC,UAAU,CAAC,CAAC;aAC3C;SACF;IACH,CAAC;IAEO,YAAY,CAAC,CAAS,EAAE,CAAS;QACvC,IAAI,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC;YAAE,MAAM,IAAI,KAAK,CAAC,uBAAuB,CAAC,CAAC;QACvD,OAAO,IAAI,CAAC,KAAK,GAAG,CAAC,GAAG,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC;IAClE,CAAC;IAED,GAAG,CAAC,CAAS,EAAE,CAAS;QACtB,IAAI,CAAC,IAAI,CAAC;YACR,OAAO,CAAC,CAAC;aACN,IAAI,CAAC,GAAG,CAAC;YACZ,OAAO,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;;YAE3C,OAAO,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;IAC/C,CAAC;IAED,GAAG,CAAC,CAAS,EAAE,CAAS,EAAE,KAAa;QACrC,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,KAAK,CAAC;IAC9C,CAAC;IAED,MAAM,CAAC,IAAI,CAAO,IAAqB,EAAE,MAAoC;QAC3E,MAAM,IAAI,GAAW,IAAI,CAAC,MAAM,CAAC;QACjC,MAAM,GAAG,GAAG,IAAI,cAAc,CAAC,SAAS,EAAE,IAAI,CAAC,CAAC;QAChD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,EAAE,CAAC,EAAE,EAAE;YAC7B,KAAK,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,EAAE,CAAC,EAAE;gBAC/B,GAAG,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC,EAAE,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;SAC3C;QACD,OAAO,GAAG,CAAC;IACb,CAAC;IAED,wCAAwC;IACjC,MAAM;QACX,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,MAAM,EAAE,CAAC,EAAE;YACxC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,GAAG,SAAA,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,EAAI,CAAC,CAAA,CAAC;IACvC,CAAC;IAED,2CAA2C;IACpC,GAAG,CAAC,KAAqB;QAC9B,IAAI,IAAI,CAAC,KAAK,KAAK,KAAK,CAAC,KAAK;YAC5B,MAAM,IAAI,KAAK,CAAC,gDAAgD,IAAI,CAAC,KAAK,iBAAiB,KAAK,CAAC,KAAK,EAAE,CAAC,CAAC;QAC5G,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,MAAM,EAAE,CAAC,EAAE;YACxC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,IAAI,KAAK,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;IACpC,CAAC;IAED,4CAA4C;IACrC,IAAI;QACT,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,MAAM,EAAE,CAAC,EAAE;YACxC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC;IAC7C,CAAC;IAED,mCAAmC;IAC5B,SAAS;QACd,IAAI,GAAG,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;QACxB,IAAI,GAAG,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;QACxB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;YAC1C,IAAI,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,GAAG,GAAG;gBACrB,GAAG,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;YACtB,IAAI,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,GAAG,GAAG;gBACrB,GAAG,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;SACvB;QACD,MAAM,KAAK,GAAG,GAAG,GAAG,GAAG,CAAC;QACxB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,MAAM,EAAE,CAAC,EAAE;YACxC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,GAAG,KAAK,KAAK,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,GAAG,GAAG,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,GAAG,GAAG,CAAC,GAAG,CAAC,GAAG,GAAG,GAAG,CAAC,CAAC;IAC5F,CAAC;CACF"}
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package/src/trees/index.d.ts
CHANGED
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@@ -8,6 +8,11 @@ export interface NodeCuttedType extends NodeType {
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cuttedLeafNameList: string[];
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cuttedChildren?: NodeType[];
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}
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export type ClusterMatrix = {
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mergeRow1: Int32Array;
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mergeRow2: Int32Array;
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heightsResult: Float32Array;
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};
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export type TreeLeafDict = {
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[nodeName: string]: NodeType;
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};
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package/src/trees/index.d.ts.map
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@@ -1 +1 @@
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{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["index.ts"],"names":[],"mappings":"AAIA,kHAAkH;AAClH,MAAM,WAAW,QAAQ;IACvB,IAAI,EAAE,MAAM,CAAC;IACb,aAAa,CAAC,EAAE,MAAM,CAAC;IACvB,QAAQ,CAAC,EAAE,QAAQ,EAAE,CAAC;CACvB;AAED,MAAM,WAAW,cAAe,SAAQ,QAAQ;IAC9C,kBAAkB,EAAE,MAAM,EAAE,CAAC;IAC7B,cAAc,CAAC,EAAE,QAAQ,EAAE,CAAC;CAC7B;AAED,MAAM,MAAM,YAAY,GAAG;IAAE,CAAC,QAAQ,EAAE,MAAM,GAAG,QAAQ,CAAA;CAAE,CAAC;AAC5D,MAAM,MAAM,YAAY,GAAG;IAAE,CAAC,QAAQ,EAAE,MAAM,GAAG,MAAM,CAAA;CAAE,CAAC;AAC1D,MAAM,MAAM,gBAAgB,GAAG,CAAC,QAAQ,EAAE,MAAM,KAAK,IAAI,CAAC;AAE1D,oBAAY,IAAI;IACd,MAAM,YAAY;IAClB,WAAW,iBAAiB;IAC5B,OAAO,oBAAoB;IAC3B,oBAAoB,sBAAsB;CAC3C;AAED,wBAAgB,MAAM,CAAC,IAAI,EAAE,QAAQ,WAEpC;AAED,oBAAY,cAAc;IACxB,IAAI,SAAS;IACb,KAAK,UAAU;IACf,OAAO,YAAY;IACnB,SAAS,cAAc;IACvB,SAAS,cAAc;CACxB;AAED,oBAAY,cAAc;IACxB,SAAS,cAAc;IACvB,SAAS,cAAc;CACxB;AAED,oBAAY,aAAa;IACvB,MAAM,WAAW;IACjB,QAAQ,aAAa;IACrB,OAAO,YAAY;IACnB,QAAQ,aAAa;IACrB,QAAQ,aAAa;IACrB,MAAM,WAAW;IACjB,IAAI,SAAS;CACd;AAGD,eAAO,MAAM,kBAAkB,EAAE;IAAE,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAAA;CAMxD,CAAC"}
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+
{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["index.ts"],"names":[],"mappings":"AAIA,kHAAkH;AAClH,MAAM,WAAW,QAAQ;IACvB,IAAI,EAAE,MAAM,CAAC;IACb,aAAa,CAAC,EAAE,MAAM,CAAC;IACvB,QAAQ,CAAC,EAAE,QAAQ,EAAE,CAAC;CACvB;AAED,MAAM,WAAW,cAAe,SAAQ,QAAQ;IAC9C,kBAAkB,EAAE,MAAM,EAAE,CAAC;IAC7B,cAAc,CAAC,EAAE,QAAQ,EAAE,CAAC;CAC7B;AAED,MAAM,MAAM,aAAa,GAAG;IAC1B,SAAS,EAAC,UAAU,CAAC;IACrB,SAAS,EAAC,UAAU,CAAC;IACrB,aAAa,EAAC,YAAY,CAAC;CAC5B,CAAA;AAED,MAAM,MAAM,YAAY,GAAG;IAAE,CAAC,QAAQ,EAAE,MAAM,GAAG,QAAQ,CAAA;CAAE,CAAC;AAC5D,MAAM,MAAM,YAAY,GAAG;IAAE,CAAC,QAAQ,EAAE,MAAM,GAAG,MAAM,CAAA;CAAE,CAAC;AAC1D,MAAM,MAAM,gBAAgB,GAAG,CAAC,QAAQ,EAAE,MAAM,KAAK,IAAI,CAAC;AAE1D,oBAAY,IAAI;IACd,MAAM,YAAY;IAClB,WAAW,iBAAiB;IAC5B,OAAO,oBAAoB;IAC3B,oBAAoB,sBAAsB;CAC3C;AAED,wBAAgB,MAAM,CAAC,IAAI,EAAE,QAAQ,WAEpC;AAED,oBAAY,cAAc;IACxB,IAAI,SAAS;IACb,KAAK,UAAU;IACf,OAAO,YAAY;IACnB,SAAS,cAAc;IACvB,SAAS,cAAc;CACxB;AAED,oBAAY,cAAc;IACxB,SAAS,cAAc;IACvB,SAAS,cAAc;CACxB;AAED,oBAAY,aAAa;IACvB,MAAM,WAAW;IACjB,QAAQ,aAAa;IACrB,OAAO,YAAY;IACnB,QAAQ,aAAa;IACrB,QAAQ,aAAa;IACrB,MAAM,WAAW;IACjB,IAAI,SAAS;CACd;AAGD,eAAO,MAAM,kBAAkB,EAAE;IAAE,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAAA;CAMxD,CAAC"}
|
package/src/trees/index.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"index.js","sourceRoot":"","sources":["index.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;
|
|
1
|
+
{"version":3,"file":"index.js","sourceRoot":"","sources":["index.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAwBtC,MAAM,CAAN,IAAY,IAKX;AALD,WAAY,IAAI;IACd,0BAAkB,CAAA;IAClB,oCAA4B,CAAA;IAC5B,mCAA2B,CAAA;IAC3B,kDAA0C,CAAA;AAC5C,CAAC,EALW,IAAI,KAAJ,IAAI,QAKf;AAED,MAAM,UAAU,MAAM,CAAC,IAAc;IACnC,OAAO,CAAC,IAAI,CAAC,QAAQ,IAAI,IAAI,CAAC,QAAQ,CAAC,MAAM,IAAI,CAAC,CAAC;AACrD,CAAC;AAED,MAAM,CAAN,IAAY,cAMX;AAND,WAAY,cAAc;IACxB,+BAAa,CAAA;IACb,iCAAe,CAAA;IACf,qCAAmB,CAAA;IACnB,yCAAuB,CAAA;IACvB,yCAAuB,CAAA;AACzB,CAAC,EANW,cAAc,KAAd,cAAc,QAMzB;AAED,MAAM,CAAN,IAAY,cAGX;AAHD,WAAY,cAAc;IACxB,yCAAuB,CAAA;IACvB,yCAAuB,CAAA;AACzB,CAAC,EAHW,cAAc,KAAd,cAAc,QAGzB;AAED,MAAM,CAAN,IAAY,aAQX;AARD,WAAY,aAAa;IACvB,kCAAiB,CAAA;IACjB,sCAAqB,CAAA;IACrB,oCAAmB,CAAA;IACnB,sCAAqB,CAAA;IACrB,sCAAqB,CAAA;IACrB,kCAAiB,CAAA;IACjB,8BAAa,CAAA;AACf,CAAC,EARW,aAAa,KAAb,aAAa,QAQxB;AAGD,MAAM,CAAC,MAAM,kBAAkB,GAA+B;IAC5D,CAAC,cAAc,CAAC,IAAI,CAAC,EAAE,EAAE,CAAC,KAAK,CAAC,kBAAkB,CAAC,EAAE,CAAC;IACtD,CAAC,cAAc,CAAC,KAAK,CAAC,EAAE,EAAE,CAAC,KAAK,CAAC,kBAAkB,CAAC,EAAE,CAAC;IACvD,CAAC,cAAc,CAAC,OAAO,CAAC,EAAE,EAAE,CAAC,KAAK,CAAC,UAAU;IAC7C,CAAC,cAAc,CAAC,SAAS,CAAC,EAAE,EAAE,CAAC,KAAK,CAAC,aAAa;IAClD,CAAC,cAAc,CAAC,SAAS,CAAC,EAAE,EAAE,CAAC,KAAK,CAAC,YAAY;CAClD,CAAC"}
|
|
@@ -1,5 +1,5 @@
|
|
|
1
1
|
import * as DG from 'datagrok-api/dg';
|
|
2
|
-
import { DistanceMetric, NodeCuttedType, NodeType } from './index';
|
|
2
|
+
import { ClusterMatrix, DistanceMetric, NodeCuttedType, NodeType } from './index';
|
|
3
3
|
import { DistanceMatrix } from './distance-matrix';
|
|
4
4
|
export interface ITreeHelper {
|
|
5
5
|
/** Generates data frame with row per node, parent relation, distance, annotation
|
|
@@ -44,6 +44,7 @@ export interface ITreeHelper {
|
|
|
44
44
|
hierarchicalClustering(df: DG.DataFrame, distance: string, linkage: string): Promise<NodeType>;
|
|
45
45
|
hierarchicalClusteringByDistance(distance: DistanceMatrix, linkage: string): Promise<NodeType>;
|
|
46
46
|
calcDistanceMatrix(df: DG.DataFrame, colNames: string[], distanceMetric?: DistanceMetric): Promise<DistanceMatrix | null>;
|
|
47
|
+
parseClusterMatrix(clusterMatrix: ClusterMatrix): NodeType;
|
|
47
48
|
}
|
|
48
49
|
export declare function getTreeHelper(): Promise<ITreeHelper>;
|
|
49
50
|
//# sourceMappingURL=tree-helper.d.ts.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"tree-helper.d.ts","sourceRoot":"","sources":["tree-helper.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAEtC,OAAO,EAAC,cAAc,EAAE,cAAc,EAAE,QAAQ,EAAC,MAAM,SAAS,CAAC;
|
|
1
|
+
{"version":3,"file":"tree-helper.d.ts","sourceRoot":"","sources":["tree-helper.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAEtC,OAAO,EAAC,aAAa,EAAE,cAAc,EAAE,cAAc,EAAE,QAAQ,EAAC,MAAM,SAAS,CAAC;AAChF,OAAO,EAAC,cAAc,EAAC,MAAM,mBAAmB,CAAC;AAEjD,MAAM,WAAW,WAAW;IAC1B;;;;;OAKG;IACH,UAAU,CAAC,MAAM,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,EAAE,UAAU,CAAC,EAAE,MAAM,GAAG,EAAE,CAAC,SAAS,CAAC;IAE5E,QAAQ,CAAC,IAAI,EAAE,QAAQ,GAAG,IAAI,GAAG,MAAM,CAAC;IAExC,WAAW,CAAC,KAAK,SAAS,QAAQ,EAAE,IAAI,EAAE,KAAK,GAAG,IAAI,GAAG,KAAK,EAAE,CAAC;IAEjE,WAAW,CAAC,KAAK,SAAS,QAAQ,EAAE,IAAI,EAAE,KAAK,GAAG,IAAI,GAAG,KAAK,EAAE,CAAC;IAEjE;;OAEG;IACH,kBAAkB,CAAC,IAAI,EAAE,QAAQ,GAAG,IAAI,EAAE,MAAM,EAAE;QAAE,CAAC,IAAI,EAAE,MAAM,GAAG,GAAG,CAAA;KAAE,GAAG,QAAQ,GAAG,IAAI,CAAC;IAE5F;;OAEG;IACH,gBAAgB,CAAC,KAAK,SAAS,QAAQ,EAAE,IAAI,EAAE,KAAK,GAAG,IAAI,EAAE,MAAM,EAAE;QAAE,CAAC,IAAI,EAAE,MAAM,GAAG,GAAG,CAAA;KAAE,GAAG,KAAK,EAAE,CAAC;IAEvG,eAAe,CAAC,IAAI,EAAE,QAAQ,GAAG,IAAI,EAAE,SAAS,EAAE,MAAM,EAAE,aAAa,CAAC,EAAE,MAAM,GAAG,QAAQ,EAAE,CAAC;IAE9F,aAAa,CACX,IAAI,EAAE,QAAQ,GAAG,IAAI,EAAE,SAAS,EAAE,MAAM,EAAE,UAAU,CAAC,EAAE,OAAO,EAAE,aAAa,CAAC,EAAE,MAAM,GAAG,QAAQ,GAAG,IAAI,CAAC;IAE3G;;OAEG;IACH,YAAY,CAAC,IAAI,EAAE,QAAQ,GAAG,IAAI,EAAE,IAAI,EAAE,EAAE,CAAC,IAAI,EAAE,WAAW,CAAC,EAAE,MAAM,GAAG,CAAC,QAAQ,EAAE,MAAM,EAAE,CAAC,CAAC;IAE/F,YAAY,CAAC,IAAI,EAAE,cAAc,EAC/B,MAAM,EAAE,EAAE,CAAC,SAAS,EAAE,WAAW,EAAE,MAAM,GAAG,IAAI,EAAE,cAAc,EAAE,MAAM,EAAE,EAAE,CAAC,EAAE,GAAG,GAAG,IAAI,CAAC;IAE5F;;OAEG;IACH,aAAa,CAAC,IAAI,EAAE,cAAc,EAAE,SAAS,EAAE,EAAE,CAAC,SAAS,EAAE,cAAc,EAAE,MAAM,EAAE,WAAW,CAAC,EAAE,MAAM,GAAG,IAAI,CAAC;IAEjH;;OAEG;IACH,aAAa,CAAC,IAAI,EAAE,QAAQ,EAAE,SAAS,EAAE,MAAM,EAAE,MAAM,EAAE,EAAE,CAAC,SAAS,EACnE,WAAW,EAAE,MAAM,EAAE,cAAc,EAAE,MAAM,EAAE,EAAE,CAAC,EAAE,GAAG,GAAG,IAAI,CAAC;IAE/D,kFAAkF;IAClF,YAAY,CAAC,IAAI,EAAE,MAAM,GAAG,QAAQ,CAAC;IAErC,sBAAsB,CAAC,EAAE,EAAE,EAAE,CAAC,SAAS,EAAE,QAAQ,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,GAAG,OAAO,CAAC,QAAQ,CAAC,CAAC;IAE/F,gCAAgC,CAAC,QAAQ,EAAE,cAAc,EAAE,OAAO,EAAE,MAAM,GAAG,OAAO,CAAC,QAAQ,CAAC,CAAC;IAE/F,kBAAkB,CAAC,EAAE,EAAE,EAAE,CAAC,SAAS,EAAE,QAAQ,EAAE,MAAM,EAAE,EACrD,cAAc,CAAC,EAAE,cAAc,GAAG,OAAO,CAAC,cAAc,GAAG,IAAI,CAAC,CAAC;IAEnE,kBAAkB,CAAC,aAAa,EAAC,aAAa,GAAG,QAAQ,CAAC;CAC3D;AAED,wBAAsB,aAAa,IAAI,OAAO,CAAC,WAAW,CAAC,CAO1D"}
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"tree-helper.js","sourceRoot":"","sources":["tree-helper.ts"],"names":[],"mappings":";;;;;;;;;AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;
|
|
1
|
+
{"version":3,"file":"tree-helper.js","sourceRoot":"","sources":["tree-helper.ts"],"names":[],"mappings":";;;;;;;;;AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAmEtC,MAAM,UAAgB,aAAa;;QACjC,MAAM,QAAQ,GAAG,EAAE,CAAC,IAAI,CAAC,IAAI,CAAC,EAAC,OAAO,EAAE,YAAY,EAAE,IAAI,EAAE,eAAe,EAAC,CAAC,CAAC;QAC9E,IAAI,QAAQ,CAAC,MAAM,KAAK,CAAC;YACvB,MAAM,IAAI,KAAK,CAAC,8DAA8D,CAAC,CAAC;QAElF,MAAM,GAAG,GAAgB,CAAC,MAAM,QAAQ,CAAC,CAAC,CAAC,CAAC,OAAO,EAAE,CAAC,IAAI,EAAE,CAAC,CAAC,mBAAmB,EAAiB,CAAC;QACnG,OAAO,GAAG,CAAC;IACb,CAAC;CAAA"}
|