@datagrok-libraries/bio 5.27.0 → 5.28.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (26) hide show
  1. package/.eslintrc.json +1 -1
  2. package/package.json +6 -2
  3. package/src/trees/distance-matrix.d.ts +6 -2
  4. package/src/trees/distance-matrix.d.ts.map +1 -1
  5. package/src/trees/distance-matrix.js +27 -2
  6. package/src/trees/distance-matrix.js.map +1 -1
  7. package/src/trees/index.d.ts +13 -0
  8. package/src/trees/index.d.ts.map +1 -1
  9. package/src/trees/index.js +15 -0
  10. package/src/trees/index.js.map +1 -1
  11. package/src/trees/tree-helper.d.ts +2 -1
  12. package/src/trees/tree-helper.d.ts.map +1 -1
  13. package/src/trees/tree-helper.js.map +1 -1
  14. package/src/viewers/molstar-viewer.d.ts +71 -2
  15. package/src/viewers/molstar-viewer.d.ts.map +1 -1
  16. package/src/viewers/molstar-viewer.js +79 -1
  17. package/src/viewers/molstar-viewer.js.map +1 -1
  18. package/src/viewers/vd-regions.d.ts +8 -3
  19. package/src/viewers/vd-regions.d.ts.map +1 -1
  20. package/src/viewers/vd-regions.js +2 -2
  21. package/src/viewers/vd-regions.js.map +1 -1
  22. package/src/viewers/web-logo.d.ts +43 -3
  23. package/src/viewers/web-logo.d.ts.map +1 -1
  24. package/src/viewers/web-logo.js +43 -2
  25. package/src/viewers/web-logo.js.map +1 -1
  26. package/tsconfig.json +1 -1
package/.eslintrc.json CHANGED
@@ -1,7 +1,7 @@
1
1
  {
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2
  "env": {
3
3
  "browser": true,
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- "es2021": true
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+ "es2022": true
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  },
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  "extends": [
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  "google"
package/package.json CHANGED
@@ -1,10 +1,14 @@
1
1
  {
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2
  "name": "@datagrok-libraries/bio",
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+ "author": {
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+ "name": "Aleksandr Tanas",
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+ "email": "atanas@datagrok.ai"
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+ },
3
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  "publishConfig": {
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  "access": "public"
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9
  },
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  "friendlyName": "Datagrok bio library",
7
- "version": "5.27.0",
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+ "version": "5.28.0",
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12
  "description": "",
9
13
  "dependencies": {
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14
  "@datagrok-libraries/gridext": "^1.3.22",
@@ -30,7 +34,7 @@
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  "link": "npm link",
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  "link-api": "npm link datagrok-api",
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  "link-utils": "npm link @datagrok-libraries/utils",
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- "link-all": "npm link datagrok-api @datagrok-libraries/utils",
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+ "link-all": "npm link datagrok-api @datagrok-libraries/utils @datagrok-libraries/gridext",
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  "build-bio": "tsc",
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  "build": "tsc",
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  "lint": "eslint \"./src/**/*.ts\"",
package/src/trees/distance-matrix.d.ts CHANGED
@@ -5,14 +5,18 @@ export declare class DistanceMatrix {
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5
  get data(): Float32Array;
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6
  get size(): number;
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  /**
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- * @param {Float64Array} data Distance data
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- * @param {number} m Number of original observations
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+ * @param {Float32Array} data Distance data
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+ * @param {number} size Number of original observations
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  */
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  constructor(data?: Float32Array, size?: number);
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  private _linearizeIJ;
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  get(i: number, j: number): number;
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  set(i: number, j: number, value: number): void;
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  static calc<TObj>(list: Indexable<TObj>, method: (a: TObj, b: TObj) => number): DistanceMatrix;
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+ square(): void;
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+ add(other: DistanceMatrix): void;
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+ sqrt(): void;
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+ normalize(): void;
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  }
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  export interface Indexable<TObj> {
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  [index: number]: TObj;
package/src/trees/distance-matrix.d.ts.map CHANGED
@@ -1 +1 @@
1
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1
+ {"version":3,"file":"distance-matrix.d.ts","sourceRoot":"","sources":["distance-matrix.ts"],"names":[],"mappings":"AAIA,2FAA2F;AAC3F,qBAAa,cAAc;IACzB,KAAK,EAAE,YAAY,CAAC;IACpB,KAAK,EAAE,MAAM,CAAC;IAEd,IAAI,IAAI,IAAI,YAAY,CAAuB;IAE/C,IAAI,IAAI,IAAI,MAAM,CAAuB;IAEzC;;;OAGG;gBACS,IAAI,CAAC,EAAE,YAAY,EAAE,IAAI,CAAC,EAAE,MAAM;IAqB9C,OAAO,CAAC,YAAY;IAKpB,GAAG,CAAC,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM;IASxB,GAAG,CAAC,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM;IAIvC,MAAM,CAAC,IAAI,CAAC,IAAI,EAAE,IAAI,EAAE,SAAS,CAAC,IAAI,CAAC,EAAE,MAAM,EAAE,CAAC,CAAC,EAAE,IAAI,EAAE,CAAC,EAAE,IAAI,KAAK,MAAM,GAAG,cAAc;IAWvF,MAAM;IAMN,GAAG,CAAC,KAAK,EAAE,cAAc;IAQzB,IAAI;IAMJ,SAAS;CAOjB;AAED,MAAM,WAAW,SAAS,CAAC,IAAI;IAC7B,CAAC,KAAK,EAAE,MAAM,GAAG,IAAI,CAAC;IACtB,IAAI,MAAM,IAAI,MAAM,CAAC;CACtB"}
package/src/trees/distance-matrix.js CHANGED
@@ -3,8 +3,8 @@ export class DistanceMatrix {
3
3
  get data() { return this._data; }
4
4
  get size() { return this._size; }
5
5
  /**
6
- * @param {Float64Array} data Distance data
7
- * @param {number} m Number of original observations
6
+ * @param {Float32Array} data Distance data
7
+ * @param {number} size Number of original observations
8
8
  */
9
9
  constructor(data, size) {
10
10
  if (size == undefined) {
@@ -53,5 +53,30 @@ export class DistanceMatrix {
53
53
  }
54
54
  return res;
55
55
  }
56
+ // squares each value in matrix in place
57
+ square() {
58
+ for (let i = 0; i < this._data.length; i++)
59
+ this._data[i] = Math.pow(this._data[i], 2);
60
+ }
61
+ // adds another matrix to this one in place
62
+ add(other) {
63
+ if (this._size !== other._size)
64
+ throw new Error(`Matrices must have the same size. This size: ${this._size}, other size: ${other._size}`);
65
+ for (let i = 0; i < this._data.length; i++)
66
+ this._data[i] += other._data[i];
67
+ }
68
+ // square root each value in matrix in place
69
+ sqrt() {
70
+ for (let i = 0; i < this._data.length; i++)
71
+ this._data[i] = Math.sqrt(this._data[i]);
72
+ }
73
+ //normilze distance matrix in place
74
+ normalize() {
75
+ const max = Math.max(...this._data);
76
+ const min = Math.min(...this._data);
77
+ const range = max - min;
78
+ for (let i = 0; i < this._data.length; i++)
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+ this._data[i] = range === 0 ? this._data[i] - min : (this._data[i] - min) / (max - min);
80
+ }
56
81
  }
57
82
  //# sourceMappingURL=distance-matrix.js.map
package/src/trees/distance-matrix.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"distance-matrix.js","sourceRoot":"","sources":["distance-matrix.ts"],"names":[],"mappings":"AAIA,2FAA2F;AAC3F,MAAM,OAAO,cAAc;IAIzB,IAAI,IAAI,KAAmB,OAAO,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC;IAE/C,IAAI,IAAI,KAAa,OAAO,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC;IAEzC;;;OAGG;IACH,YAAY,IAAmB,EAAE,IAAa;QAC5C,IAAI,IAAI,IAAI,SAAS,EAAE;YACrB,IAAI,IAAI,IAAI,SAAS;gBAAE,MAAM,IAAI,KAAK,CAAC,4CAA4C,CAAC,CAAC;YAErF,IAAI,CAAC,KAAK,GAAG,IAAK,CAAC;YACnB,IAAI,CAAC,KAAK,GAAG,CAAC,CAAC,GAAG,IAAI,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC,GAAG,CAAC,CAAC;YAChE,IAAI,IAAI,CAAC,KAAK,IAAI,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC;gBACtC,MAAM,IAAI,KAAK,CAAC,uBAAuB,IAAI,CAAC,KAAK,CAAC,MAAM,8BAA8B,IAAI,CAAC,KAAK,EAAE,CAAC,CAAC;SACvG;aAAM;YACL,IAAI,CAAC,KAAK,GAAG,IAAI,CAAC;YAClB,MAAM,UAAU,GAAW,IAAI,GAAG,CAAC,IAAI,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC;YACjD,IAAI,IAAI,EAAE;gBACR,IAAI,IAAI,CAAC,MAAM,IAAI,UAAU;oBAC3B,MAAM,IAAI,KAAK,CAAC,0CAA0C,IAAI,yBAAyB,UAAU,GAAG,CAAC,CAAC;gBACxG,IAAI,CAAC,KAAK,GAAG,IAAI,CAAC;aACnB;iBAAM;gBACL,IAAI,CAAC,KAAK,GAAG,IAAI,YAAY,CAAC,UAAU,CAAC,CAAC;aAC3C;SACF;IACH,CAAC;IAEO,YAAY,CAAC,CAAS,EAAE,CAAS;QACvC,IAAI,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC;YAAE,MAAM,IAAI,KAAK,CAAC,uBAAuB,CAAC,CAAC;QACvD,OAAO,IAAI,CAAC,KAAK,GAAG,CAAC,GAAG,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC;IAClE,CAAC;IAED,GAAG,CAAC,CAAS,EAAE,CAAS;QACtB,IAAI,CAAC,IAAI,CAAC;YACR,OAAO,CAAC,CAAC;aACN,IAAI,CAAC,GAAG,CAAC;YACZ,OAAO,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;;YAE3C,OAAO,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;IAC/C,CAAC;IAED,GAAG,CAAC,CAAS,EAAE,CAAS,EAAE,KAAa;QACrC,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,KAAK,CAAC;IAC9C,CAAC;IAED,MAAM,CAAC,IAAI,CAAO,IAAqB,EAAE,MAAoC;QAC3E,MAAM,IAAI,GAAW,IAAI,CAAC,MAAM,CAAC;QACjC,MAAM,GAAG,GAAG,IAAI,cAAc,CAAC,SAAS,EAAE,IAAI,CAAC,CAAC;QAChD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,EAAE,CAAC,EAAE,EAAE;YAC7B,KAAK,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,EAAE,CAAC,EAAE;gBAC/B,GAAG,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC,EAAE,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;SAC3C;QACD,OAAO,GAAG,CAAC;IACb,CAAC;CACF"}
1
+ {"version":3,"file":"distance-matrix.js","sourceRoot":"","sources":["distance-matrix.ts"],"names":[],"mappings":"AAIA,2FAA2F;AAC3F,MAAM,OAAO,cAAc;IAIzB,IAAI,IAAI,KAAmB,OAAO,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC;IAE/C,IAAI,IAAI,KAAa,OAAO,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC;IAEzC;;;OAGG;IACH,YAAY,IAAmB,EAAE,IAAa;QAC5C,IAAI,IAAI,IAAI,SAAS,EAAE;YACrB,IAAI,IAAI,IAAI,SAAS;gBAAE,MAAM,IAAI,KAAK,CAAC,4CAA4C,CAAC,CAAC;YAErF,IAAI,CAAC,KAAK,GAAG,IAAK,CAAC;YACnB,IAAI,CAAC,KAAK,GAAG,CAAC,CAAC,GAAG,IAAI,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC,GAAG,CAAC,CAAC;YAChE,IAAI,IAAI,CAAC,KAAK,IAAI,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC;gBACtC,MAAM,IAAI,KAAK,CAAC,uBAAuB,IAAI,CAAC,KAAK,CAAC,MAAM,8BAA8B,IAAI,CAAC,KAAK,EAAE,CAAC,CAAC;SACvG;aAAM;YACL,IAAI,CAAC,KAAK,GAAG,IAAI,CAAC;YAClB,MAAM,UAAU,GAAW,IAAI,GAAG,CAAC,IAAI,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC;YACjD,IAAI,IAAI,EAAE;gBACR,IAAI,IAAI,CAAC,MAAM,IAAI,UAAU;oBAC3B,MAAM,IAAI,KAAK,CAAC,0CAA0C,IAAI,yBAAyB,UAAU,GAAG,CAAC,CAAC;gBACxG,IAAI,CAAC,KAAK,GAAG,IAAI,CAAC;aACnB;iBAAM;gBACL,IAAI,CAAC,KAAK,GAAG,IAAI,YAAY,CAAC,UAAU,CAAC,CAAC;aAC3C;SACF;IACH,CAAC;IAEO,YAAY,CAAC,CAAS,EAAE,CAAS;QACvC,IAAI,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC;YAAE,MAAM,IAAI,KAAK,CAAC,uBAAuB,CAAC,CAAC;QACvD,OAAO,IAAI,CAAC,KAAK,GAAG,CAAC,GAAG,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC;IAClE,CAAC;IAED,GAAG,CAAC,CAAS,EAAE,CAAS;QACtB,IAAI,CAAC,IAAI,CAAC;YACR,OAAO,CAAC,CAAC;aACN,IAAI,CAAC,GAAG,CAAC;YACZ,OAAO,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;;YAE3C,OAAO,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;IAC/C,CAAC;IAED,GAAG,CAAC,CAAS,EAAE,CAAS,EAAE,KAAa;QACrC,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,KAAK,CAAC;IAC9C,CAAC;IAED,MAAM,CAAC,IAAI,CAAO,IAAqB,EAAE,MAAoC;QAC3E,MAAM,IAAI,GAAW,IAAI,CAAC,MAAM,CAAC;QACjC,MAAM,GAAG,GAAG,IAAI,cAAc,CAAC,SAAS,EAAE,IAAI,CAAC,CAAC;QAChD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,EAAE,CAAC,EAAE,EAAE;YAC7B,KAAK,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,EAAE,CAAC,EAAE;gBAC/B,GAAG,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC,EAAE,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;SAC3C;QACD,OAAO,GAAG,CAAC;IACb,CAAC;IAED,wCAAwC;IACjC,MAAM;QACX,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,MAAM,EAAE,CAAC,EAAE;YACxC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,GAAG,SAAA,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,EAAI,CAAC,CAAA,CAAC;IACvC,CAAC;IAED,2CAA2C;IACpC,GAAG,CAAC,KAAqB;QAC9B,IAAI,IAAI,CAAC,KAAK,KAAK,KAAK,CAAC,KAAK;YAC5B,MAAM,IAAI,KAAK,CAAC,gDAAgD,IAAI,CAAC,KAAK,iBAAiB,KAAK,CAAC,KAAK,EAAE,CAAC,CAAC;QAC5G,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,MAAM,EAAE,CAAC,EAAE;YACxC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,IAAI,KAAK,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;IACpC,CAAC;IAED,4CAA4C;IACrC,IAAI;QACT,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,MAAM,EAAE,CAAC,EAAE;YACxC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC;IAC7C,CAAC;IAED,mCAAmC;IAC5B,SAAS;QACd,MAAM,GAAG,GAAG,IAAI,CAAC,GAAG,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC;QACpC,MAAM,GAAG,GAAG,IAAI,CAAC,GAAG,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC;QACpC,MAAM,KAAK,GAAG,GAAG,GAAG,GAAG,CAAC;QACxB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,MAAM,EAAE,CAAC,EAAE;YACxC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,GAAG,KAAK,KAAK,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,GAAG,GAAG,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,GAAG,GAAG,CAAC,GAAG,CAAC,GAAG,GAAG,GAAG,CAAC,CAAC;IAC5F,CAAC;CACF"}
package/src/trees/index.d.ts CHANGED
@@ -29,6 +29,19 @@ export declare enum TreeColorNames {
29
29
  MouseOver = "MouseOver",
30
30
  Selection = "Selection"
31
31
  }
32
+ export declare enum DistanceMetric {
33
+ Euclidean = "euclidean",
34
+ Manhattan = "manhattan"
35
+ }
36
+ export declare enum LinkageMethod {
37
+ Single = "single",
38
+ Complete = "complete",
39
+ Average = "average",
40
+ Weighted = "weighted",
41
+ Centroid = "centroid",
42
+ Median = "median",
43
+ Ward = "ward"
44
+ }
32
45
  export declare const TreeDefaultPalette: {
33
46
  [name: string]: number;
34
47
  };
package/src/trees/index.d.ts.map CHANGED
@@ -1 +1 @@
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- {"version":3,"file":"index.d.ts","sourceRoot":"","sources":["index.ts"],"names":[],"mappings":"AAIA,kHAAkH;AAClH,MAAM,WAAW,QAAQ;IACvB,IAAI,EAAE,MAAM,CAAC;IACb,aAAa,CAAC,EAAE,MAAM,CAAC;IACvB,QAAQ,CAAC,EAAE,QAAQ,EAAE,CAAC;CACvB;AAED,MAAM,WAAW,cAAe,SAAQ,QAAQ;IAC9C,kBAAkB,EAAE,MAAM,EAAE,CAAC;IAC7B,cAAc,CAAC,EAAE,QAAQ,EAAE,CAAC;CAC7B;AAED,MAAM,MAAM,YAAY,GAAG;IAAE,CAAC,QAAQ,EAAE,MAAM,GAAG,QAAQ,CAAA;CAAE,CAAC;AAC5D,MAAM,MAAM,YAAY,GAAG;IAAE,CAAC,QAAQ,EAAE,MAAM,GAAG,MAAM,CAAA;CAAE,CAAC;AAC1D,MAAM,MAAM,gBAAgB,GAAG,CAAC,QAAQ,EAAE,MAAM,KAAK,IAAI,CAAC;AAE1D,oBAAY,IAAI;IACd,MAAM,YAAY;IAClB,WAAW,iBAAiB;IAC5B,OAAO,oBAAoB;IAC3B,oBAAoB,sBAAsB;CAC3C;AAED,wBAAgB,MAAM,CAAC,IAAI,EAAE,QAAQ,WAEpC;AAED,oBAAY,cAAc;IACxB,IAAI,SAAS;IACb,KAAK,UAAU;IACf,OAAO,YAAY;IACnB,SAAS,cAAc;IACvB,SAAS,cAAc;CACxB;AAED,eAAO,MAAM,kBAAkB,EAAE;IAAE,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAAA;CAMxD,CAAC"}
1
+ {"version":3,"file":"index.d.ts","sourceRoot":"","sources":["index.ts"],"names":[],"mappings":"AAIA,kHAAkH;AAClH,MAAM,WAAW,QAAQ;IACvB,IAAI,EAAE,MAAM,CAAC;IACb,aAAa,CAAC,EAAE,MAAM,CAAC;IACvB,QAAQ,CAAC,EAAE,QAAQ,EAAE,CAAC;CACvB;AAED,MAAM,WAAW,cAAe,SAAQ,QAAQ;IAC9C,kBAAkB,EAAE,MAAM,EAAE,CAAC;IAC7B,cAAc,CAAC,EAAE,QAAQ,EAAE,CAAC;CAC7B;AAED,MAAM,MAAM,YAAY,GAAG;IAAE,CAAC,QAAQ,EAAE,MAAM,GAAG,QAAQ,CAAA;CAAE,CAAC;AAC5D,MAAM,MAAM,YAAY,GAAG;IAAE,CAAC,QAAQ,EAAE,MAAM,GAAG,MAAM,CAAA;CAAE,CAAC;AAC1D,MAAM,MAAM,gBAAgB,GAAG,CAAC,QAAQ,EAAE,MAAM,KAAK,IAAI,CAAC;AAE1D,oBAAY,IAAI;IACd,MAAM,YAAY;IAClB,WAAW,iBAAiB;IAC5B,OAAO,oBAAoB;IAC3B,oBAAoB,sBAAsB;CAC3C;AAED,wBAAgB,MAAM,CAAC,IAAI,EAAE,QAAQ,WAEpC;AAED,oBAAY,cAAc;IACxB,IAAI,SAAS;IACb,KAAK,UAAU;IACf,OAAO,YAAY;IACnB,SAAS,cAAc;IACvB,SAAS,cAAc;CACxB;AAED,oBAAY,cAAc;IACxB,SAAS,cAAc;IACvB,SAAS,cAAc;CACxB;AAED,oBAAY,aAAa;IACvB,MAAM,WAAW;IACjB,QAAQ,aAAa;IACrB,OAAO,YAAY;IACnB,QAAQ,aAAa;IACrB,QAAQ,aAAa;IACrB,MAAM,WAAW;IACjB,IAAI,SAAS;CACd;AAGD,eAAO,MAAM,kBAAkB,EAAE;IAAE,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAAA;CAMxD,CAAC"}
package/src/trees/index.js CHANGED
@@ -17,6 +17,21 @@ export var TreeColorNames;
17
17
  TreeColorNames["MouseOver"] = "MouseOver";
18
18
  TreeColorNames["Selection"] = "Selection";
19
19
  })(TreeColorNames || (TreeColorNames = {}));
20
+ export var DistanceMetric;
21
+ (function (DistanceMetric) {
22
+ DistanceMetric["Euclidean"] = "euclidean";
23
+ DistanceMetric["Manhattan"] = "manhattan";
24
+ })(DistanceMetric || (DistanceMetric = {}));
25
+ export var LinkageMethod;
26
+ (function (LinkageMethod) {
27
+ LinkageMethod["Single"] = "single";
28
+ LinkageMethod["Complete"] = "complete";
29
+ LinkageMethod["Average"] = "average";
30
+ LinkageMethod["Weighted"] = "weighted";
31
+ LinkageMethod["Centroid"] = "centroid";
32
+ LinkageMethod["Median"] = "median";
33
+ LinkageMethod["Ward"] = "ward";
34
+ })(LinkageMethod || (LinkageMethod = {}));
20
35
  export const TreeDefaultPalette = {
21
36
  [TreeColorNames.Main]: DG.Color.categoricalPalette[12],
22
37
  [TreeColorNames.Light]: DG.Color.categoricalPalette[13],
package/src/trees/index.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"index.js","sourceRoot":"","sources":["index.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAkBtC,MAAM,CAAN,IAAY,IAKX;AALD,WAAY,IAAI;IACd,0BAAkB,CAAA;IAClB,oCAA4B,CAAA;IAC5B,mCAA2B,CAAA;IAC3B,kDAA0C,CAAA;AAC5C,CAAC,EALW,IAAI,KAAJ,IAAI,QAKf;AAED,MAAM,UAAU,MAAM,CAAC,IAAc;IACnC,OAAO,CAAC,IAAI,CAAC,QAAQ,IAAI,IAAI,CAAC,QAAQ,CAAC,MAAM,IAAI,CAAC,CAAC;AACrD,CAAC;AAED,MAAM,CAAN,IAAY,cAMX;AAND,WAAY,cAAc;IACxB,+BAAa,CAAA;IACb,iCAAe,CAAA;IACf,qCAAmB,CAAA;IACnB,yCAAuB,CAAA;IACvB,yCAAuB,CAAA;AACzB,CAAC,EANW,cAAc,KAAd,cAAc,QAMzB;AAED,MAAM,CAAC,MAAM,kBAAkB,GAA+B;IAC5D,CAAC,cAAc,CAAC,IAAI,CAAC,EAAE,EAAE,CAAC,KAAK,CAAC,kBAAkB,CAAC,EAAE,CAAC;IACtD,CAAC,cAAc,CAAC,KAAK,CAAC,EAAE,EAAE,CAAC,KAAK,CAAC,kBAAkB,CAAC,EAAE,CAAC;IACvD,CAAC,cAAc,CAAC,OAAO,CAAC,EAAE,EAAE,CAAC,KAAK,CAAC,UAAU;IAC7C,CAAC,cAAc,CAAC,SAAS,CAAC,EAAE,EAAE,CAAC,KAAK,CAAC,aAAa;IAClD,CAAC,cAAc,CAAC,SAAS,CAAC,EAAE,EAAE,CAAC,KAAK,CAAC,YAAY;CAClD,CAAC"}
1
+ {"version":3,"file":"index.js","sourceRoot":"","sources":["index.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAkBtC,MAAM,CAAN,IAAY,IAKX;AALD,WAAY,IAAI;IACd,0BAAkB,CAAA;IAClB,oCAA4B,CAAA;IAC5B,mCAA2B,CAAA;IAC3B,kDAA0C,CAAA;AAC5C,CAAC,EALW,IAAI,KAAJ,IAAI,QAKf;AAED,MAAM,UAAU,MAAM,CAAC,IAAc;IACnC,OAAO,CAAC,IAAI,CAAC,QAAQ,IAAI,IAAI,CAAC,QAAQ,CAAC,MAAM,IAAI,CAAC,CAAC;AACrD,CAAC;AAED,MAAM,CAAN,IAAY,cAMX;AAND,WAAY,cAAc;IACxB,+BAAa,CAAA;IACb,iCAAe,CAAA;IACf,qCAAmB,CAAA;IACnB,yCAAuB,CAAA;IACvB,yCAAuB,CAAA;AACzB,CAAC,EANW,cAAc,KAAd,cAAc,QAMzB;AAED,MAAM,CAAN,IAAY,cAGX;AAHD,WAAY,cAAc;IACxB,yCAAuB,CAAA;IACvB,yCAAuB,CAAA;AACzB,CAAC,EAHW,cAAc,KAAd,cAAc,QAGzB;AAED,MAAM,CAAN,IAAY,aAQX;AARD,WAAY,aAAa;IACvB,kCAAiB,CAAA;IACjB,sCAAqB,CAAA;IACrB,oCAAmB,CAAA;IACnB,sCAAqB,CAAA;IACrB,sCAAqB,CAAA;IACrB,kCAAiB,CAAA;IACjB,8BAAa,CAAA;AACf,CAAC,EARW,aAAa,KAAb,aAAa,QAQxB;AAGD,MAAM,CAAC,MAAM,kBAAkB,GAA+B;IAC5D,CAAC,cAAc,CAAC,IAAI,CAAC,EAAE,EAAE,CAAC,KAAK,CAAC,kBAAkB,CAAC,EAAE,CAAC;IACtD,CAAC,cAAc,CAAC,KAAK,CAAC,EAAE,EAAE,CAAC,KAAK,CAAC,kBAAkB,CAAC,EAAE,CAAC;IACvD,CAAC,cAAc,CAAC,OAAO,CAAC,EAAE,EAAE,CAAC,KAAK,CAAC,UAAU;IAC7C,CAAC,cAAc,CAAC,SAAS,CAAC,EAAE,EAAE,CAAC,KAAK,CAAC,aAAa;IAClD,CAAC,cAAc,CAAC,SAAS,CAAC,EAAE,EAAE,CAAC,KAAK,CAAC,YAAY;CAClD,CAAC"}
package/src/trees/tree-helper.d.ts CHANGED
@@ -1,5 +1,5 @@
1
1
  import * as DG from 'datagrok-api/dg';
2
- import { NodeCuttedType, NodeType } from './index';
2
+ import { DistanceMetric, NodeCuttedType, NodeType } from './index';
3
3
  import { DistanceMatrix } from './distance-matrix';
4
4
  export interface ITreeHelper {
5
5
  /** Generates data frame with row per node, parent relation, distance, annotation
@@ -43,6 +43,7 @@ export interface ITreeHelper {
43
43
  generateTree(size: number): NodeType;
44
44
  hierarchicalClustering(df: DG.DataFrame, distance: string, linkage: string): Promise<NodeType>;
45
45
  hierarchicalClusteringByDistance(distance: DistanceMatrix, linkage: string): Promise<NodeType>;
46
+ calcDistanceMatrix(df: DG.DataFrame, colNames: string[], distanceMetric?: DistanceMetric): Promise<DistanceMatrix | null>;
46
47
  }
47
48
  export declare function getTreeHelper(): Promise<ITreeHelper>;
48
49
  //# sourceMappingURL=tree-helper.d.ts.map
package/src/trees/tree-helper.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"tree-helper.d.ts","sourceRoot":"","sources":["tree-helper.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAEtC,OAAO,EAAC,cAAc,EAAE,QAAQ,EAAC,MAAM,SAAS,CAAC;AACjD,OAAO,EAAC,cAAc,EAAC,MAAM,mBAAmB,CAAC;AAEjD,MAAM,WAAW,WAAW;IAC1B;;;;;OAKG;IACH,UAAU,CAAC,MAAM,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,EAAE,UAAU,CAAC,EAAE,MAAM,GAAG,EAAE,CAAC,SAAS,CAAC;IAE5E,QAAQ,CAAC,IAAI,EAAE,QAAQ,GAAG,IAAI,GAAG,MAAM,CAAC;IAExC,WAAW,CAAC,KAAK,SAAS,QAAQ,EAAE,IAAI,EAAE,KAAK,GAAG,IAAI,GAAG,KAAK,EAAE,CAAC;IAEjE,WAAW,CAAC,KAAK,SAAS,QAAQ,EAAE,IAAI,EAAE,KAAK,GAAG,IAAI,GAAG,KAAK,EAAE,CAAC;IAEjE;;OAEG;IACH,kBAAkB,CAAC,IAAI,EAAE,QAAQ,GAAG,IAAI,EAAE,MAAM,EAAE;QAAE,CAAC,IAAI,EAAE,MAAM,GAAG,GAAG,CAAA;KAAE,GAAG,QAAQ,GAAG,IAAI,CAAC;IAE5F;;OAEG;IACH,gBAAgB,CAAC,KAAK,SAAS,QAAQ,EAAE,IAAI,EAAE,KAAK,GAAG,IAAI,EAAE,MAAM,EAAE;QAAE,CAAC,IAAI,EAAE,MAAM,GAAG,GAAG,CAAA;KAAE,GAAG,KAAK,EAAE,CAAC;IAEvG,eAAe,CAAC,IAAI,EAAE,QAAQ,GAAG,IAAI,EAAE,SAAS,EAAE,MAAM,EAAE,aAAa,CAAC,EAAE,MAAM,GAAG,QAAQ,EAAE,CAAC;IAE9F,aAAa,CACX,IAAI,EAAE,QAAQ,GAAG,IAAI,EAAE,SAAS,EAAE,MAAM,EAAE,UAAU,CAAC,EAAE,OAAO,EAAE,aAAa,CAAC,EAAE,MAAM,GAAG,QAAQ,GAAG,IAAI,CAAC;IAE3G;;OAEG;IACH,YAAY,CAAC,IAAI,EAAE,QAAQ,GAAG,IAAI,EAAE,IAAI,EAAE,EAAE,CAAC,IAAI,EAAE,WAAW,CAAC,EAAE,MAAM,GAAG,CAAC,QAAQ,EAAE,MAAM,EAAE,CAAC,CAAC;IAE/F,YAAY,CAAC,IAAI,EAAE,cAAc,EAC/B,MAAM,EAAE,EAAE,CAAC,SAAS,EAAE,WAAW,EAAE,MAAM,GAAG,IAAI,EAAE,cAAc,EAAE,MAAM,EAAE,EAAE,CAAC,EAAE,GAAG,GAAG,IAAI,CAAC;IAE5F;;OAEG;IACH,aAAa,CAAC,IAAI,EAAE,cAAc,EAAE,SAAS,EAAE,EAAE,CAAC,SAAS,EAAE,cAAc,EAAE,MAAM,EAAE,WAAW,CAAC,EAAE,MAAM,GAAG,IAAI,CAAC;IAEjH;;OAEG;IACH,aAAa,CAAC,IAAI,EAAE,QAAQ,EAAE,SAAS,EAAE,MAAM,EAAE,MAAM,EAAE,EAAE,CAAC,SAAS,EACnE,WAAW,EAAE,MAAM,EAAE,cAAc,EAAE,MAAM,EAAE,EAAE,CAAC,EAAE,GAAG,GAAG,IAAI,CAAC;IAE/D,kFAAkF;IAClF,YAAY,CAAC,IAAI,EAAE,MAAM,GAAG,QAAQ,CAAC;IAErC,sBAAsB,CAAC,EAAE,EAAE,EAAE,CAAC,SAAS,EAAE,QAAQ,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,GAAG,OAAO,CAAC,QAAQ,CAAC,CAAC;IAE/F,gCAAgC,CAAC,QAAQ,EAAE,cAAc,EAAE,OAAO,EAAE,MAAM,GAAG,OAAO,CAAC,QAAQ,CAAC,CAAC;CAChG;AAED,wBAAsB,aAAa,IAAI,OAAO,CAAC,WAAW,CAAC,CAO1D"}
1
+ {"version":3,"file":"tree-helper.d.ts","sourceRoot":"","sources":["tree-helper.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAEtC,OAAO,EAAC,cAAc,EAAE,cAAc,EAAE,QAAQ,EAAC,MAAM,SAAS,CAAC;AACjE,OAAO,EAAC,cAAc,EAAC,MAAM,mBAAmB,CAAC;AAEjD,MAAM,WAAW,WAAW;IAC1B;;;;;OAKG;IACH,UAAU,CAAC,MAAM,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,EAAE,UAAU,CAAC,EAAE,MAAM,GAAG,EAAE,CAAC,SAAS,CAAC;IAE5E,QAAQ,CAAC,IAAI,EAAE,QAAQ,GAAG,IAAI,GAAG,MAAM,CAAC;IAExC,WAAW,CAAC,KAAK,SAAS,QAAQ,EAAE,IAAI,EAAE,KAAK,GAAG,IAAI,GAAG,KAAK,EAAE,CAAC;IAEjE,WAAW,CAAC,KAAK,SAAS,QAAQ,EAAE,IAAI,EAAE,KAAK,GAAG,IAAI,GAAG,KAAK,EAAE,CAAC;IAEjE;;OAEG;IACH,kBAAkB,CAAC,IAAI,EAAE,QAAQ,GAAG,IAAI,EAAE,MAAM,EAAE;QAAE,CAAC,IAAI,EAAE,MAAM,GAAG,GAAG,CAAA;KAAE,GAAG,QAAQ,GAAG,IAAI,CAAC;IAE5F;;OAEG;IACH,gBAAgB,CAAC,KAAK,SAAS,QAAQ,EAAE,IAAI,EAAE,KAAK,GAAG,IAAI,EAAE,MAAM,EAAE;QAAE,CAAC,IAAI,EAAE,MAAM,GAAG,GAAG,CAAA;KAAE,GAAG,KAAK,EAAE,CAAC;IAEvG,eAAe,CAAC,IAAI,EAAE,QAAQ,GAAG,IAAI,EAAE,SAAS,EAAE,MAAM,EAAE,aAAa,CAAC,EAAE,MAAM,GAAG,QAAQ,EAAE,CAAC;IAE9F,aAAa,CACX,IAAI,EAAE,QAAQ,GAAG,IAAI,EAAE,SAAS,EAAE,MAAM,EAAE,UAAU,CAAC,EAAE,OAAO,EAAE,aAAa,CAAC,EAAE,MAAM,GAAG,QAAQ,GAAG,IAAI,CAAC;IAE3G;;OAEG;IACH,YAAY,CAAC,IAAI,EAAE,QAAQ,GAAG,IAAI,EAAE,IAAI,EAAE,EAAE,CAAC,IAAI,EAAE,WAAW,CAAC,EAAE,MAAM,GAAG,CAAC,QAAQ,EAAE,MAAM,EAAE,CAAC,CAAC;IAE/F,YAAY,CAAC,IAAI,EAAE,cAAc,EAC/B,MAAM,EAAE,EAAE,CAAC,SAAS,EAAE,WAAW,EAAE,MAAM,GAAG,IAAI,EAAE,cAAc,EAAE,MAAM,EAAE,EAAE,CAAC,EAAE,GAAG,GAAG,IAAI,CAAC;IAE5F;;OAEG;IACH,aAAa,CAAC,IAAI,EAAE,cAAc,EAAE,SAAS,EAAE,EAAE,CAAC,SAAS,EAAE,cAAc,EAAE,MAAM,EAAE,WAAW,CAAC,EAAE,MAAM,GAAG,IAAI,CAAC;IAEjH;;OAEG;IACH,aAAa,CAAC,IAAI,EAAE,QAAQ,EAAE,SAAS,EAAE,MAAM,EAAE,MAAM,EAAE,EAAE,CAAC,SAAS,EACnE,WAAW,EAAE,MAAM,EAAE,cAAc,EAAE,MAAM,EAAE,EAAE,CAAC,EAAE,GAAG,GAAG,IAAI,CAAC;IAE/D,kFAAkF;IAClF,YAAY,CAAC,IAAI,EAAE,MAAM,GAAG,QAAQ,CAAC;IAErC,sBAAsB,CAAC,EAAE,EAAE,EAAE,CAAC,SAAS,EAAE,QAAQ,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,GAAG,OAAO,CAAC,QAAQ,CAAC,CAAC;IAE/F,gCAAgC,CAAC,QAAQ,EAAE,cAAc,EAAE,OAAO,EAAE,MAAM,GAAG,OAAO,CAAC,QAAQ,CAAC,CAAC;IAE/F,kBAAkB,CAAC,EAAE,EAAE,EAAE,CAAC,SAAS,EAAE,QAAQ,EAAE,MAAM,EAAE,EACrD,cAAc,CAAC,EAAE,cAAc,GAAG,OAAO,CAAC,cAAc,GAAG,IAAI,CAAC,CAAC;CACpE;AAED,wBAAsB,aAAa,IAAI,OAAO,CAAC,WAAW,CAAC,CAO1D"}
package/src/trees/tree-helper.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"tree-helper.js","sourceRoot":"","sources":["tree-helper.ts"],"names":[],"mappings":";;;;;;;;;AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AA8DtC,MAAM,UAAgB,aAAa;;QACjC,MAAM,QAAQ,GAAG,EAAE,CAAC,IAAI,CAAC,IAAI,CAAC,EAAC,OAAO,EAAE,YAAY,EAAE,IAAI,EAAE,eAAe,EAAC,CAAC,CAAC;QAC9E,IAAI,QAAQ,CAAC,MAAM,KAAK,CAAC;YACvB,MAAM,IAAI,KAAK,CAAC,8DAA8D,CAAC,CAAC;QAElF,MAAM,GAAG,GAAgB,CAAC,MAAM,QAAQ,CAAC,CAAC,CAAC,CAAC,OAAO,EAAE,CAAC,IAAI,EAAE,CAAC,CAAC,mBAAmB,EAAiB,CAAC;QACnG,OAAO,GAAG,CAAC;IACb,CAAC;CAAA"}
1
+ {"version":3,"file":"tree-helper.js","sourceRoot":"","sources":["tree-helper.ts"],"names":[],"mappings":";;;;;;;;;AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAiEtC,MAAM,UAAgB,aAAa;;QACjC,MAAM,QAAQ,GAAG,EAAE,CAAC,IAAI,CAAC,IAAI,CAAC,EAAC,OAAO,EAAE,YAAY,EAAE,IAAI,EAAE,eAAe,EAAC,CAAC,CAAC;QAC9E,IAAI,QAAQ,CAAC,MAAM,KAAK,CAAC;YACvB,MAAM,IAAI,KAAK,CAAC,8DAA8D,CAAC,CAAC;QAElF,MAAM,GAAG,GAAgB,CAAC,MAAM,QAAQ,CAAC,CAAC,CAAC,CAAC,OAAO,EAAE,CAAC,IAAI,EAAE,CAAC,CAAC,mBAAmB,EAAiB,CAAC;QACnG,OAAO,GAAG,CAAC;IACb,CAAC;CAAA"}
package/src/viewers/molstar-viewer.d.ts CHANGED
@@ -1,10 +1,79 @@
1
1
  import * as DG from 'datagrok-api/dg';
2
2
  import { IViewer } from './viewer';
3
3
  import { PdbResDataFrameType } from '../pdb/pdb-helper';
4
- export interface IMolstarViewer extends IViewer {
5
- setData(df: PdbResDataFrameType | DG.DataFrame): void;
4
+ export declare enum RepresentationType {
5
+ Cartoon = "cartoon",
6
+ Backbone = "backbone",
7
+ BallAndStick = "ball+stick",
8
+ Licorice = "licorice",
9
+ Hyperball = "hyperball",
10
+ Surface = "surface"
11
+ }
12
+ export declare enum RegionStateOptionsType {
13
+ FULL = "full",
14
+ COLLAPSED = "collapsed",
15
+ HIDDEN = "hidden"
16
+ }
17
+ export declare enum SimpleRegionStateOptionsType {
18
+ FULL = "full",
19
+ HIDDEN = "hidden"
20
+ }
21
+ export declare enum PluginLayoutControlsDisplayType {
22
+ OUTSIDE = "outside",
23
+ PORTRAIT = "portrait",
24
+ LANDSCAPE = "landscape",
25
+ REACTIVE = "reactive"
26
+ }
27
+ export declare const BiostructurePropsDefault: {
28
+ pdb: string | null;
29
+ pdbTag: string | null;
30
+ ligandColumnName: string | null;
31
+ pdbProvider: string;
32
+ emdbProvider: string;
33
+ representation: RepresentationType;
34
+ layoutIsExpanded: boolean;
35
+ layoutShowControls: boolean;
36
+ layoutRegionStateLeft: RegionStateOptionsType;
37
+ layoutRegionStateTop: SimpleRegionStateOptionsType;
38
+ layoutRegionStateRight: SimpleRegionStateOptionsType;
39
+ layoutRegionStateBottom: SimpleRegionStateOptionsType;
40
+ layoutControlsDisplay: PluginLayoutControlsDisplayType;
41
+ showImportControls: boolean;
42
+ showSessionControls: boolean;
43
+ showStructureSourceControls: boolean;
44
+ showSuperpositionControls: boolean;
45
+ showValidationReportControls: boolean;
46
+ showMembraneOrientationPreset: boolean;
47
+ /**
48
+ * Needed when running outside of sierra. If set to true, the strucmotif UI will use an absolute URL to sierra-prod.
49
+ * Otherwise, the link will be relative on the current host.
50
+ */
51
+ detachedFromSierra: boolean;
52
+ layoutShowRemoteState: boolean;
53
+ layoutShowSequence: boolean;
54
+ layoutShowLog: boolean;
55
+ layoutShowLeftPanel: boolean;
56
+ collapseLeftPanel: boolean;
57
+ collapseRightPanel: boolean;
58
+ viewportShowExpand: boolean;
59
+ viewportShowControls: boolean;
60
+ viewportShowSelectionMode: boolean;
61
+ volumeStreamingServer: string;
62
+ backgroundColor: number;
63
+ showWelcomeToast: boolean;
64
+ modelUrlProviders: string;
65
+ showExportControls: boolean;
66
+ };
67
+ export type BiostructureProps = Required<typeof BiostructurePropsDefault>;
68
+ export interface IBiostructureViewer extends IViewer {
69
+ setOptions(options: Partial<BiostructureProps>): void;
6
70
  }
7
71
  export interface ISaguaroViewer extends IViewer {
8
72
  setData(df: PdbResDataFrameType | DG.DataFrame): void;
9
73
  }
74
+ declare module 'datagrok-api/dg' {
75
+ interface DataFramePlotHelper {
76
+ fromType(viewerType: 'Biostructure', options: Partial<BiostructureProps>): Promise<DG.Viewer & IBiostructureViewer>;
77
+ }
78
+ }
10
79
  //# sourceMappingURL=molstar-viewer.d.ts.map
package/src/viewers/molstar-viewer.d.ts.map CHANGED
@@ -1 +1 @@
1
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1
+ {"version":3,"file":"molstar-viewer.d.ts","sourceRoot":"","sources":["molstar-viewer.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAItC,OAAO,EAAC,OAAO,EAAC,MAAM,UAAU,CAAC;AACjC,OAAO,EAAC,mBAAmB,EAAC,MAAM,mBAAmB,CAAC;AAEtD,oBAAY,kBAAkB;IAC5B,OAAO,YAAY;IACnB,QAAQ,aAAa;IACrB,YAAY,eAAe;IAC3B,QAAQ,aAAa;IACrB,SAAS,cAAc;IACvB,OAAO,YAAY;CACpB;AAED,oBAAY,sBAAsB;IAChC,IAAI,SAAS;IACb,SAAS,cAAc;IACvB,MAAM,WAAW;CAClB;AAED,oBAAY,4BAA4B;IACtC,IAAI,SAAS;IACb,MAAM,WAAW;CAClB;AAED,oBAAY,+BAA+B;IACzC,OAAO,YAAY;IACnB,QAAQ,aAAa;IACrB,SAAS,cAAc;IACvB,QAAQ,aAAa;CACtB;AAED,eAAO,MAAM,wBAAwB;SAE9B,MAAM,GAAG,IAAI;YACV,MAAM,GAAG,IAAI;sBACH,MAAM,GAAG,IAAI;iBAClB,MAAM;kBACL,MAAM;oBAGJ,kBAAkB;sBAGhB,OAAO;wBACL,OAAO;2BACJ,sBAAsB;0BACvB,4BAA4B;4BAC1B,4BAA4B;6BAC3B,4BAA4B;2BAC9B,+BAA+B;wBAElC,OAAO;yBACN,OAAO;iCACC,OAAO;+BAGT,OAAO;kCAMJ,OAAO;mCAEN,OAAO;IAGtC;;;OAGG;wBACiB,OAAO;2BAEJ,OAAO;wBACV,OAAO;mBACZ,OAAO;yBACD,OAAO;uBAET,OAAO;wBACN,OAAO;wBACP,OAAO;0BACL,OAAO;+BAEF,OAAO;2BACX,MAAM;qBACZ,MAAM;sBACL,OAAO;uBAEN,MAAM;wBACL,OAAO;CAC1B,CAAC;AAEJ,MAAM,MAAM,iBAAiB,GAAG,QAAQ,CAAC,OAAO,wBAAwB,CAAC,CAAC;AAE1E,MAAM,WAAW,mBAAoB,SAAQ,OAAO;IAClD,UAAU,CAAC,OAAO,EAAE,OAAO,CAAC,iBAAiB,CAAC,GAAG,IAAI,CAAC;CACvD;AAGD,MAAM,WAAW,cAAe,SAAQ,OAAO;IAC7C,OAAO,CAAC,EAAE,EAAE,mBAAmB,GAAG,EAAE,CAAC,SAAS,GAAG,IAAI,CAAC;CACvD;AAED,OAAO,QAAQ,iBAAiB,CAAC;IAC/B,UAAU,mBAAmB;QAC3B,QAAQ,CAAC,UAAU,EAAE,cAAc,EAAE,OAAO,EAAE,OAAO,CAAC,iBAAiB,CAAC,GAAG,OAAO,CAAC,EAAE,CAAC,MAAM,GAAG,mBAAmB,CAAC,CAAC;KACrH;CACF"}
package/src/viewers/molstar-viewer.js CHANGED
@@ -1,2 +1,80 @@
1
- export {};
1
+ export var RepresentationType;
2
+ (function (RepresentationType) {
3
+ RepresentationType["Cartoon"] = "cartoon";
4
+ RepresentationType["Backbone"] = "backbone";
5
+ RepresentationType["BallAndStick"] = "ball+stick";
6
+ RepresentationType["Licorice"] = "licorice";
7
+ RepresentationType["Hyperball"] = "hyperball";
8
+ RepresentationType["Surface"] = "surface";
9
+ })(RepresentationType || (RepresentationType = {}));
10
+ export var RegionStateOptionsType;
11
+ (function (RegionStateOptionsType) {
12
+ RegionStateOptionsType["FULL"] = "full";
13
+ RegionStateOptionsType["COLLAPSED"] = "collapsed";
14
+ RegionStateOptionsType["HIDDEN"] = "hidden";
15
+ })(RegionStateOptionsType || (RegionStateOptionsType = {}));
16
+ export var SimpleRegionStateOptionsType;
17
+ (function (SimpleRegionStateOptionsType) {
18
+ SimpleRegionStateOptionsType["FULL"] = "full";
19
+ SimpleRegionStateOptionsType["HIDDEN"] = "hidden";
20
+ })(SimpleRegionStateOptionsType || (SimpleRegionStateOptionsType = {}));
21
+ export var PluginLayoutControlsDisplayType;
22
+ (function (PluginLayoutControlsDisplayType) {
23
+ PluginLayoutControlsDisplayType["OUTSIDE"] = "outside";
24
+ PluginLayoutControlsDisplayType["PORTRAIT"] = "portrait";
25
+ PluginLayoutControlsDisplayType["LANDSCAPE"] = "landscape";
26
+ PluginLayoutControlsDisplayType["REACTIVE"] = "reactive";
27
+ })(PluginLayoutControlsDisplayType || (PluginLayoutControlsDisplayType = {}));
28
+ export const BiostructurePropsDefault = new class {
29
+ constructor() {
30
+ // -- Data --
31
+ this.pdb = null;
32
+ this.pdbTag = null;
33
+ this.ligandColumnName = null;
34
+ this.pdbProvider = 'rcsb';
35
+ this.emdbProvider = 'rcsb';
36
+ // -- Style --
37
+ this.representation = RepresentationType.Cartoon;
38
+ // -- Layout --
39
+ this.layoutIsExpanded = false;
40
+ this.layoutShowControls = false;
41
+ this.layoutRegionStateLeft = RegionStateOptionsType.FULL;
42
+ this.layoutRegionStateTop = SimpleRegionStateOptionsType.FULL;
43
+ this.layoutRegionStateRight = SimpleRegionStateOptionsType.FULL;
44
+ this.layoutRegionStateBottom = SimpleRegionStateOptionsType.FULL;
45
+ this.layoutControlsDisplay = PluginLayoutControlsDisplayType.OUTSIDE;
46
+ this.showImportControls = false;
47
+ this.showSessionControls = false;
48
+ this.showStructureSourceControls = true;
49
+ // showMeasurementsControls: true,
50
+ // showStrucmotifSubmitControls: true,
51
+ this.showSuperpositionControls = true;
52
+ // showQuickStylesControls: false,
53
+ // showStructureComponentControls: true,
54
+ // showVolumeStreamingControls: true,
55
+ // showAssemblySymmetryControls: true,
56
+ this.showValidationReportControls = true;
57
+ this.showMembraneOrientationPreset = false;
58
+ // showNakbColorTheme: false,
59
+ /**
60
+ * Needed when running outside of sierra. If set to true, the strucmotif UI will use an absolute URL to sierra-prod.
61
+ * Otherwise, the link will be relative on the current host.
62
+ */
63
+ this.detachedFromSierra = false;
64
+ this.layoutShowRemoteState = false;
65
+ this.layoutShowSequence = false;
66
+ this.layoutShowLog = false;
67
+ this.layoutShowLeftPanel = false;
68
+ this.collapseLeftPanel = true;
69
+ this.collapseRightPanel = true;
70
+ this.viewportShowExpand = false;
71
+ this.viewportShowControls = false;
72
+ this.viewportShowSelectionMode = true;
73
+ this.volumeStreamingServer = 'https://maps.rcsb.org/';
74
+ this.backgroundColor = 0xffffff; // white
75
+ this.showWelcomeToast = false;
76
+ this.modelUrlProviders = '';
77
+ this.showExportControls = false;
78
+ }
79
+ }();
2
80
  //# sourceMappingURL=molstar-viewer.js.map
package/src/viewers/molstar-viewer.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"molstar-viewer.js","sourceRoot":"","sources":["molstar-viewer.ts"],"names":[],"mappings":""}
1
+ {"version":3,"file":"molstar-viewer.js","sourceRoot":"","sources":["molstar-viewer.ts"],"names":[],"mappings":"AAOA,MAAM,CAAN,IAAY,kBAOX;AAPD,WAAY,kBAAkB;IAC5B,yCAAmB,CAAA;IACnB,2CAAqB,CAAA;IACrB,iDAA2B,CAAA;IAC3B,2CAAqB,CAAA;IACrB,6CAAuB,CAAA;IACvB,yCAAmB,CAAA;AACrB,CAAC,EAPW,kBAAkB,KAAlB,kBAAkB,QAO7B;AAED,MAAM,CAAN,IAAY,sBAIX;AAJD,WAAY,sBAAsB;IAChC,uCAAa,CAAA;IACb,iDAAuB,CAAA;IACvB,2CAAiB,CAAA;AACnB,CAAC,EAJW,sBAAsB,KAAtB,sBAAsB,QAIjC;AAED,MAAM,CAAN,IAAY,4BAGX;AAHD,WAAY,4BAA4B;IACtC,6CAAa,CAAA;IACb,iDAAiB,CAAA;AACnB,CAAC,EAHW,4BAA4B,KAA5B,4BAA4B,QAGvC;AAED,MAAM,CAAN,IAAY,+BAKX;AALD,WAAY,+BAA+B;IACzC,sDAAmB,CAAA;IACnB,wDAAqB,CAAA;IACrB,0DAAuB,CAAA;IACvB,wDAAqB,CAAA;AACvB,CAAC,EALW,+BAA+B,KAA/B,+BAA+B,QAK1C;AAED,MAAM,CAAC,MAAM,wBAAwB,GAAG,IAAI;IAAA;QAC1C,aAAa;QACb,QAAG,GAAkB,IAAI,CAAC;QAC1B,WAAM,GAAkB,IAAI,CAAC;QAC7B,qBAAgB,GAAkB,IAAI,CAAC;QACvC,gBAAW,GAAW,MAAM,CAAC;QAC7B,iBAAY,GAAW,MAAM,CAAC;QAE9B,cAAc;QACd,mBAAc,GAAuB,kBAAkB,CAAC,OAAO,CAAC;QAEhE,eAAe;QACf,qBAAgB,GAAY,KAAK,CAAC;QAClC,uBAAkB,GAAY,KAAK,CAAC;QACpC,0BAAqB,GAA2B,sBAAsB,CAAC,IAAI,CAAC;QAC5E,yBAAoB,GAAiC,4BAA4B,CAAC,IAAI,CAAC;QACvF,2BAAsB,GAAiC,4BAA4B,CAAC,IAAI,CAAC;QACzF,4BAAuB,GAAiC,4BAA4B,CAAC,IAAI,CAAC;QAC1F,0BAAqB,GAAoC,+BAA+B,CAAC,OAAO,CAAC;QAEjG,uBAAkB,GAAY,KAAK,CAAC;QACpC,wBAAmB,GAAY,KAAK,CAAC;QACrC,gCAA2B,GAAY,IAAI,CAAC;QAC5C,kCAAkC;QAClC,sCAAsC;QACtC,8BAAyB,GAAY,IAAI,CAAC;QAE1C,kCAAkC;QAClC,wCAAwC;QACxC,qCAAqC;QACrC,sCAAsC;QACtC,iCAA4B,GAAY,IAAI,CAAC;QAE7C,kCAA6B,GAAY,KAAK,CAAC;QAE/C,6BAA6B;QAC7B;;;WAGG;QACH,uBAAkB,GAAY,KAAK,CAAC;QAEpC,0BAAqB,GAAY,KAAK,CAAC;QACvC,uBAAkB,GAAY,KAAK,CAAC;QACpC,kBAAa,GAAY,KAAK,CAAC;QAC/B,wBAAmB,GAAY,KAAK,CAAC;QAErC,sBAAiB,GAAY,IAAI,CAAC;QAClC,uBAAkB,GAAY,IAAI,CAAC;QACnC,uBAAkB,GAAY,KAAK,CAAC;QACpC,yBAAoB,GAAY,KAAK,CAAC;QAEtC,8BAAyB,GAAY,IAAI,CAAC;QAC1C,0BAAqB,GAAW,wBAAwB,CAAC;QACzD,oBAAe,GAAW,QAAQ,CAAC,CAAC,QAAQ;QAC5C,qBAAgB,GAAY,KAAK,CAAC;QAElC,sBAAiB,GAAW,EAAE,CAAC;QAC/B,uBAAkB,GAAY,KAAK,CAAC;IACtC,CAAC;CAAA,EAAE,CAAC"}
package/src/viewers/vd-regions.d.ts CHANGED
@@ -23,17 +23,22 @@ export interface VdRegion {
23
23
  /** Region end position (inclusive) */
24
24
  readonly positionEndName: string;
25
25
  }
26
- export declare class VdRegionsPropsDefault {
26
+ export declare const VdRegionsPropsDefault: {
27
27
  regionTypes: VdRegionType[];
28
28
  chains: string[];
29
29
  skipEmptyPositions: boolean;
30
30
  positionWidth: number;
31
31
  positionHeight: PositionHeight;
32
- }
33
- export type VdRegionsProps = Required<VdRegionsPropsDefault>;
32
+ };
33
+ export type VdRegionsProps = Required<typeof VdRegionsPropsDefault>;
34
34
  /** Interface for VdRegionsViewer from @datagrok/bio to unbind dependency to Bio package */
35
35
  export interface IVdRegionsViewer extends VdRegionsProps, IViewer {
36
36
  init(): Promise<void>;
37
37
  setData(mlbDf: DG.DataFrame, regions: VdRegion[]): void;
38
38
  }
39
+ declare module 'datagrok-api/dg' {
40
+ interface DataFramePlotHelper {
41
+ fromType(viewerType: 'VdRegions', options: Partial<VdRegionsProps>): Promise<DG.Viewer & IVdRegionsViewer>;
42
+ }
43
+ }
39
44
  //# sourceMappingURL=vd-regions.d.ts.map
package/src/viewers/vd-regions.d.ts.map CHANGED
@@ -1 +1 @@
1
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1
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package/src/viewers/vd-regions.js CHANGED
@@ -6,7 +6,7 @@ export var VdRegionType;
6
6
  VdRegionType["FR"] = "framework";
7
7
  VdRegionType["CDR"] = "cdr";
8
8
  })(VdRegionType || (VdRegionType = {}));
9
- export class VdRegionsPropsDefault {
9
+ export const VdRegionsPropsDefault = new class {
10
10
  constructor() {
11
11
  this.regionTypes = [VdRegionType.CDR];
12
12
  this.chains = ['Heavy', 'Light'];
@@ -15,5 +15,5 @@ export class VdRegionsPropsDefault {
15
15
  this.positionWidth = 16;
16
16
  this.positionHeight = PositionHeight.Entropy;
17
17
  }
18
- }
18
+ }();
19
19
  //# sourceMappingURL=vd-regions.js.map
package/src/viewers/vd-regions.js.map CHANGED
@@ -1 +1 @@
1
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1
+ {"version":3,"file":"vd-regions.js","sourceRoot":"","sources":["vd-regions.ts"],"names":[],"mappings":"AAGA,OAAO,EAAC,cAAc,EAAC,MAAM,YAAY,CAAC;AAE1C,qDAAqD;AAErD,MAAM,CAAN,IAAY,YAIX;AAJD,WAAY,YAAY;IACtB,mCAAmB,CAAA;IACnB,gCAAgB,CAAA;IAChB,2BAAW,CAAA;AACb,CAAC,EAJW,YAAY,KAAZ,YAAY,QAIvB;AAwBD,MAAM,CAAC,MAAM,qBAAqB,GAAG,IAAI;IAAA;QACvC,gBAAW,GAAmB,CAAC,YAAY,CAAC,GAAG,CAAC,CAAC;QACjD,WAAM,GAAa,CAAC,OAAO,EAAE,OAAO,CAAC,CAAC;QACtC,uDAAuD;QAEvD,uBAAkB,GAAY,KAAK,CAAC;QACpC,kBAAa,GAAW,EAAE,CAAC;QAC3B,mBAAc,GAAmB,cAAc,CAAC,OAAO,CAAC;IAC1D,CAAC;CAAA,EAAE,CAAC"}
package/src/viewers/web-logo.d.ts CHANGED
@@ -1,17 +1,52 @@
1
+ import * as DG from 'datagrok-api/dg';
1
2
  import { IViewer } from './viewer';
2
3
  export declare enum PositionHeight {
3
4
  Entropy = "Entropy",
4
5
  full = "100%"
5
6
  }
6
- export declare class WebLogoPropsDefault {
7
+ export declare enum VerticalAlignments {
8
+ TOP = "top",
9
+ MIDDLE = "middle",
10
+ BOTTOM = "bottom"
11
+ }
12
+ export declare enum HorizontalAlignments {
13
+ LEFT = "left",
14
+ CENTER = "center",
15
+ RIGHT = "right"
16
+ }
17
+ export declare enum PositionMarginStates {
18
+ AUTO = "auto",
19
+ ON = "on",
20
+ OFF = "off"
21
+ }
22
+ /** The source for filtering sequences considered to plot WebLogo */
23
+ export declare enum FilterSources {
24
+ /** Sequences of filtered rows are considered, default. */
25
+ Filtered = "Filtered",
26
+ /** Sequences in selection are considered to plot WebLogo for faster exploration. */
27
+ Selected = "Selected"
28
+ }
29
+ export declare const WebLogoPropsDefault: {
7
30
  sequenceColumnName: string | null;
8
31
  startPositionName: string | null;
9
32
  endPositionName: string | null;
10
33
  skipEmptySequences: boolean;
11
34
  skipEmptyPositions: boolean;
12
35
  shrinkEmptyTail: boolean;
13
- }
14
- export type WebLogoProps = Required<WebLogoPropsDefault>;
36
+ backgroundColor: number;
37
+ positionHeight: string;
38
+ positionWidth: number;
39
+ verticalAlignment: VerticalAlignments;
40
+ horizontalAlignment: HorizontalAlignments;
41
+ fixWidth: boolean;
42
+ fitArea: boolean;
43
+ minHeight: number;
44
+ maxHeight: number;
45
+ positionMarginState: PositionMarginStates;
46
+ positionMargin: number;
47
+ filterSource: FilterSources;
48
+ };
49
+ export type WebLogoProps = Required<typeof WebLogoPropsDefault>;
15
50
  export interface IWebLogoViewer extends WebLogoProps, IViewer {
16
51
  }
17
52
  export declare const positionSeparator: string;
@@ -19,4 +54,9 @@ export declare const positionRe: RegExp;
19
54
  export declare enum TAGS {
20
55
  positionNames = ".positionNames"
21
56
  }
57
+ declare module 'datagrok-api/dg' {
58
+ interface DataFramePlotHelper {
59
+ fromType(viewerType: 'WebLogo', options: Partial<WebLogoProps>): Promise<DG.Viewer & IWebLogoViewer>;
60
+ }
61
+ }
22
62
  //# sourceMappingURL=web-logo.d.ts.map
package/src/viewers/web-logo.d.ts.map CHANGED
@@ -1 +1 @@
1
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1
+ {"version":3,"file":"web-logo.d.ts","sourceRoot":"","sources":["web-logo.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAEtC,OAAO,EAAC,OAAO,EAAC,MAAM,UAAU,CAAC;AAEjC,oBAAY,cAAc;IACxB,OAAO,YAAY;IACnB,IAAI,SAAS;CACd;AAED,oBAAY,kBAAkB;IAC5B,GAAG,QAAQ;IACX,MAAM,WAAW;IACjB,MAAM,WAAW;CAClB;AAED,oBAAY,oBAAoB;IAC9B,IAAI,SAAS;IACb,MAAM,WAAW;IACjB,KAAK,UAAU;CAChB;AAED,oBAAY,oBAAoB;IAC9B,IAAI,SAAS;IACb,EAAE,OAAO;IACT,GAAG,QAAQ;CACZ;AAED,qEAAqE;AACrE,oBAAY,aAAa;IACvB,0DAA0D;IAC1D,QAAQ,aAAa;IACrB,oFAAoF;IACpF,QAAQ,aAAa;CACtB;AAED,eAAO,MAAM,mBAAmB;wBAEV,MAAM,GAAG,IAAI;uBACd,MAAM,GAAG,IAAI;qBACf,MAAM,GAAG,IAAI;wBACV,OAAO;wBACP,OAAO;qBACV,OAAO;qBAGP,MAAM;oBACP,MAAM;mBACP,MAAM;uBAGF,kBAAkB;yBAChB,oBAAoB;cAC/B,OAAO;aACR,OAAO;eACL,MAAM;eACN,MAAM;yBACI,oBAAoB;oBACzB,MAAM;kBAGR,aAAa;CAC1B,CAAC;AAEJ,MAAM,MAAM,YAAY,GAAG,QAAQ,CAAC,OAAO,mBAAmB,CAAC,CAAC;AAEhE,MAAM,WAAW,cAAe,SAAQ,YAAY,EAAE,OAAO;CAE5D;AAED,eAAO,MAAM,iBAAiB,EAAE,MAAa,CAAC;AAC9C,eAAO,MAAM,UAAU,EAAE,MAAwB,CAAC;AAElD,oBAAY,IAAI;IACd,aAAa,mBAAmB;CACjC;AAED,OAAO,QAAQ,iBAAiB,CAAC;IAC/B,UAAiB,mBAAmB;QAClC,QAAQ,CAAC,UAAU,EAAE,SAAS,EAAE,OAAO,EAAE,OAAO,CAAC,YAAY,CAAC,GAAG,OAAO,CAAC,EAAE,CAAC,MAAM,GAAG,cAAc,CAAC,CAAC;KACtG;CACF"}
package/src/viewers/web-logo.js CHANGED
@@ -3,7 +3,33 @@ export var PositionHeight;
3
3
  PositionHeight["Entropy"] = "Entropy";
4
4
  PositionHeight["full"] = "100%";
5
5
  })(PositionHeight || (PositionHeight = {}));
6
- export class WebLogoPropsDefault {
6
+ export var VerticalAlignments;
7
+ (function (VerticalAlignments) {
8
+ VerticalAlignments["TOP"] = "top";
9
+ VerticalAlignments["MIDDLE"] = "middle";
10
+ VerticalAlignments["BOTTOM"] = "bottom";
11
+ })(VerticalAlignments || (VerticalAlignments = {}));
12
+ export var HorizontalAlignments;
13
+ (function (HorizontalAlignments) {
14
+ HorizontalAlignments["LEFT"] = "left";
15
+ HorizontalAlignments["CENTER"] = "center";
16
+ HorizontalAlignments["RIGHT"] = "right";
17
+ })(HorizontalAlignments || (HorizontalAlignments = {}));
18
+ export var PositionMarginStates;
19
+ (function (PositionMarginStates) {
20
+ PositionMarginStates["AUTO"] = "auto";
21
+ PositionMarginStates["ON"] = "on";
22
+ PositionMarginStates["OFF"] = "off";
23
+ })(PositionMarginStates || (PositionMarginStates = {}));
24
+ /** The source for filtering sequences considered to plot WebLogo */
25
+ export var FilterSources;
26
+ (function (FilterSources) {
27
+ /** Sequences of filtered rows are considered, default. */
28
+ FilterSources["Filtered"] = "Filtered";
29
+ /** Sequences in selection are considered to plot WebLogo for faster exploration. */
30
+ FilterSources["Selected"] = "Selected";
31
+ })(FilterSources || (FilterSources = {}));
32
+ export const WebLogoPropsDefault = new class {
7
33
  constructor() {
8
34
  // -- Data --
9
35
  this.sequenceColumnName = null;
@@ -12,8 +38,23 @@ export class WebLogoPropsDefault {
12
38
  this.skipEmptySequences = true;
13
39
  this.skipEmptyPositions = false;
14
40
  this.shrinkEmptyTail = true;
41
+ // -- Style --
42
+ this.backgroundColor = 0xFFFFFFFF;
43
+ this.positionHeight = PositionHeight.full;
44
+ this.positionWidth = 16;
45
+ // -- Layout --
46
+ this.verticalAlignment = VerticalAlignments.MIDDLE;
47
+ this.horizontalAlignment = HorizontalAlignments.CENTER;
48
+ this.fixWidth = false;
49
+ this.fitArea = true;
50
+ this.minHeight = 50;
51
+ this.maxHeight = 100;
52
+ this.positionMarginState = PositionMarginStates.AUTO;
53
+ this.positionMargin = 0;
54
+ // -- Behavior --
55
+ this.filterSource = FilterSources.Filtered;
15
56
  }
16
- }
57
+ }();
17
58
  export const positionSeparator = ', ';
18
59
  export const positionRe = /(\d+)([A-Z]?)/;
19
60
  export var TAGS;
package/src/viewers/web-logo.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"web-logo.js","sourceRoot":"","sources":["web-logo.ts"],"names":[],"mappings":"AAKA,MAAM,CAAN,IAAY,cAGX;AAHD,WAAY,cAAc;IACxB,qCAAmB,CAAA;IACnB,+BAAa,CAAA;AACf,CAAC,EAHW,cAAc,KAAd,cAAc,QAGzB;AAED,MAAM,OAAO,mBAAmB;IAAhC;QACE,aAAa;QACb,uBAAkB,GAAkB,IAAI,CAAC;QACzC,sBAAiB,GAAkB,IAAI,CAAC;QACxC,oBAAe,GAAkB,IAAI,CAAC;QACtC,uBAAkB,GAAY,IAAI,CAAC;QACnC,uBAAkB,GAAY,KAAK,CAAC;QACpC,oBAAe,GAAY,IAAI,CAAC;IAClC,CAAC;CAAA;AAQD,MAAM,CAAC,MAAM,iBAAiB,GAAW,IAAI,CAAC;AAC9C,MAAM,CAAC,MAAM,UAAU,GAAW,eAAe,CAAC;AAElD,MAAM,CAAN,IAAY,IAEX;AAFD,WAAY,IAAI;IACd,wCAAgC,CAAA;AAClC,CAAC,EAFW,IAAI,KAAJ,IAAI,QAEf"}
1
+ {"version":3,"file":"web-logo.js","sourceRoot":"","sources":["web-logo.ts"],"names":[],"mappings":"AAMA,MAAM,CAAN,IAAY,cAGX;AAHD,WAAY,cAAc;IACxB,qCAAmB,CAAA;IACnB,+BAAa,CAAA;AACf,CAAC,EAHW,cAAc,KAAd,cAAc,QAGzB;AAED,MAAM,CAAN,IAAY,kBAIX;AAJD,WAAY,kBAAkB;IAC5B,iCAAW,CAAA;IACX,uCAAiB,CAAA;IACjB,uCAAiB,CAAA;AACnB,CAAC,EAJW,kBAAkB,KAAlB,kBAAkB,QAI7B;AAED,MAAM,CAAN,IAAY,oBAIX;AAJD,WAAY,oBAAoB;IAC9B,qCAAa,CAAA;IACb,yCAAiB,CAAA;IACjB,uCAAe,CAAA;AACjB,CAAC,EAJW,oBAAoB,KAApB,oBAAoB,QAI/B;AAED,MAAM,CAAN,IAAY,oBAIX;AAJD,WAAY,oBAAoB;IAC9B,qCAAa,CAAA;IACb,iCAAS,CAAA;IACT,mCAAW,CAAA;AACb,CAAC,EAJW,oBAAoB,KAApB,oBAAoB,QAI/B;AAED,qEAAqE;AACrE,MAAM,CAAN,IAAY,aAKX;AALD,WAAY,aAAa;IACvB,0DAA0D;IAC1D,sCAAqB,CAAA;IACrB,oFAAoF;IACpF,sCAAqB,CAAA;AACvB,CAAC,EALW,aAAa,KAAb,aAAa,QAKxB;AAED,MAAM,CAAC,MAAM,mBAAmB,GAAG,IAAI;IAAA;QACrC,aAAa;QACb,uBAAkB,GAAkB,IAAI,CAAC;QACzC,sBAAiB,GAAkB,IAAI,CAAC;QACxC,oBAAe,GAAkB,IAAI,CAAC;QACtC,uBAAkB,GAAY,IAAI,CAAC;QACnC,uBAAkB,GAAY,KAAK,CAAC;QACpC,oBAAe,GAAY,IAAI,CAAC;QAEhC,cAAc;QACd,oBAAe,GAAW,UAAU,CAAC;QACrC,mBAAc,GAAW,cAAc,CAAC,IAAI,CAAC;QAC7C,kBAAa,GAAW,EAAE,CAAC;QAE3B,eAAe;QACf,sBAAiB,GAAuB,kBAAkB,CAAC,MAAM,CAAC;QAClE,wBAAmB,GAAyB,oBAAoB,CAAC,MAAM,CAAC;QACxE,aAAQ,GAAY,KAAK,CAAC;QAC1B,YAAO,GAAY,IAAI,CAAC;QACxB,cAAS,GAAW,EAAE,CAAC;QACvB,cAAS,GAAW,GAAG,CAAC;QACxB,wBAAmB,GAAyB,oBAAoB,CAAC,IAAI,CAAC;QACtE,mBAAc,GAAW,CAAC,CAAC;QAE3B,iBAAiB;QACjB,iBAAY,GAAkB,aAAa,CAAC,QAAQ,CAAC;IACvD,CAAC;CAAA,EAAE,CAAC;AAQJ,MAAM,CAAC,MAAM,iBAAiB,GAAW,IAAI,CAAC;AAC9C,MAAM,CAAC,MAAM,UAAU,GAAW,eAAe,CAAC;AAElD,MAAM,CAAN,IAAY,IAEX;AAFD,WAAY,IAAI;IACd,wCAAgC,CAAA;AAClC,CAAC,EAFW,IAAI,KAAJ,IAAI,QAEf"}
package/tsconfig.json CHANGED
@@ -6,7 +6,7 @@
6
6
  // "incremental": true, /* Enable incremental compilation */
7
7
  "target": "es6", /* Specify ECMAScript target version: 'ES3' (default), 'ES5', 'ES2015', 'ES2016', 'ES2017', 'ES2018', 'ES2019', 'ES2020', or 'ESNEXT'. */
8
8
  "module": "es2020", /* Specify module code generation: 'none', 'commonjs', 'amd', 'system', 'umd', 'es2015', 'es2020', or 'ESNext'. */
9
- "lib": ["ES2021", "dom"], /* Specify library files to be included in the compilation. */
9
+ "lib": ["ES2022", "dom"], /* Specify library files to be included in the compilation. */
10
10
  // "allowJs": true, /* Allow javascript files to be compiled. */
11
11
  // "checkJs": true, /* Report errors in .js files. */
12
12
  // "jsx": "preserve", /* Specify JSX code generation: 'preserve', 'react-native', 'react', 'react-jsx' or 'react-jsxdev'. */