@datagrok-libraries/bio 5.23.0 → 5.25.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (8) hide show
  1. package/README.md +1 -1
  2. package/package.json +1 -1
  3. package/src/pdb/pdb-helper.d.ts +9 -1
  4. package/src/pdb/pdb-helper.d.ts.map +1 -1
  5. package/src/pdb/pdb-helper.js +1 -1
  6. package/src/viewers/molstar-viewer.d.ts +10 -0
  7. package/src/viewers/molstar-viewer.d.ts.map +1 -0
  8. package/src/viewers/molstar-viewer.js +2 -0
package/README.md CHANGED
@@ -1,3 +1,3 @@
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  # bio
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- bio is a [library](https://datagrok.ai/help/develop/develop#libraries) for the [Datagrok](https://datagrok.ai) platform.
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+ bio is a [library](https://datagrok.ai/help/develop/develop#libraries) for the [Datagrok](https://datagrok.ai) platform.
package/package.json CHANGED
@@ -4,7 +4,7 @@
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  "access": "public"
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  },
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  "friendlyName": "Datagrok bio library",
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- "version": "5.23.0",
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+ "version": "5.25.0",
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  "description": "",
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  "dependencies": {
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  "@datagrok-libraries/gridext": "^1.3.22",
package/src/pdb/pdb-helper.d.ts CHANGED
@@ -1,6 +1,14 @@
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  import * as DG from 'datagrok-api/dg';
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+ export type PdbResDataFrameType = DG.DataFrame & {
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+ get code(): DG.Column<string>;
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+ get compId(): DG.Column<string>;
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+ get seqId(): DG.Column<number>;
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+ get label(): DG.Column<string>;
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+ get seq(): DG.Column<string>;
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+ get frame(): DG.Column<number>;
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+ };
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  export interface IPdbHelper {
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- pdbToDf(pdb: string, name: string): Promise<DG.DataFrame>;
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+ pdbToDf(pdb: string, name: string): Promise<PdbResDataFrameType>;
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  }
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  export declare function getPdbHelper(): Promise<IPdbHelper>;
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  //# sourceMappingURL=pdb-helper.d.ts.map
package/src/pdb/pdb-helper.d.ts.map CHANGED
@@ -1 +1 @@
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- {"version":3,"file":"pdb-helper.d.ts","sourceRoot":"","sources":["pdb-helper.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAEtC,MAAM,WAAW,UAAU;IACzB,OAAO,CAAC,GAAG,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,EAAE,CAAC,SAAS,CAAC,CAAC;CAC3D;AAED,wBAAsB,YAAY,IAAI,OAAO,CAAC,UAAU,CAAC,CAQxD"}
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+ {"version":3,"file":"pdb-helper.d.ts","sourceRoot":"","sources":["pdb-helper.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAEtC,MAAM,MAAM,mBAAmB,GAAG,EAAE,CAAC,SAAS,GAAG;IAC/C,IAAI,IAAI,IAAI,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC;IAC9B,IAAI,MAAM,IAAI,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC;IAChC,IAAI,KAAK,IAAI,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC;IAC/B,IAAI,KAAK,IAAI,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,CAAA;IAC9B,IAAI,GAAG,IAAI,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC;IAC7B,IAAI,KAAK,IAAI,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC;CAChC,CAAC;AAEF,MAAM,WAAW,UAAU;IACzB,OAAO,CAAC,GAAG,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,mBAAmB,CAAC,CAAC;CAClE;AAED,wBAAsB,YAAY,IAAI,OAAO,CAAC,UAAU,CAAC,CAQxD"}
package/src/pdb/pdb-helper.js CHANGED
@@ -18,4 +18,4 @@ export function getPdbHelper() {
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  return res;
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  });
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  }
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- //# sourceMappingURL=data:application/json;base64,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+ //# sourceMappingURL=data:application/json;base64,eyJ2ZXJzaW9uIjozLCJmaWxlIjoicGRiLWhlbHBlci5qcyIsInNvdXJjZVJvb3QiOiIiLCJzb3VyY2VzIjpbInBkYi1oZWxwZXIudHMiXSwibmFtZXMiOltdLCJtYXBwaW5ncyI6Ijs7Ozs7Ozs7O0FBRUEsT0FBTyxLQUFLLEVBQUUsTUFBTSxpQkFBaUIsQ0FBQztBQWV0QyxNQUFNLFVBQWdCLFlBQVk7O1FBQ2hDLE1BQU0sV0FBVyxHQUFHLG9CQUFvQixDQUFDO1FBQ3pDLE1BQU0sUUFBUSxHQUFHLEVBQUUsQ0FBQyxJQUFJLENBQUMsSUFBSSxDQUFDLEVBQUMsT0FBTyxFQUFFLFdBQVcsRUFBRSxJQUFJLEVBQUUsY0FBYyxFQUFDLENBQUMsQ0FBQztRQUM1RSxJQUFJLFFBQVEsQ0FBQyxNQUFNLEtBQUssQ0FBQztZQUN2QixNQUFNLElBQUksS0FBSyxDQUFDLFlBQVksV0FBVyxvQ0FBb0MsQ0FBQyxDQUFDO1FBRS9FLE1BQU0sR0FBRyxHQUFlLENBQUMsTUFBTSxRQUFRLENBQUMsQ0FBQyxDQUFDLENBQUMsT0FBTyxFQUFFLENBQUMsSUFBSSxFQUFFLENBQUMsQ0FBQyxtQkFBbUIsRUFBZ0IsQ0FBQztRQUNqRyxPQUFPLEdBQUcsQ0FBQztJQUNiLENBQUM7Q0FBQSIsInNvdXJjZXNDb250ZW50IjpbImltcG9ydCAqIGFzIGdyb2sgZnJvbSAnZGF0YWdyb2stYXBpL2dyb2snO1xuaW1wb3J0ICogYXMgdWkgZnJvbSAnZGF0YWdyb2stYXBpL3VpJztcbmltcG9ydCAqIGFzIERHIGZyb20gJ2RhdGFncm9rLWFwaS9kZyc7XG5cbmV4cG9ydCB0eXBlIFBkYlJlc0RhdGFGcmFtZVR5cGUgPSBERy5EYXRhRnJhbWUgJiB7XG4gIGdldCBjb2RlKCk6IERHLkNvbHVtbjxzdHJpbmc+O1xuICBnZXQgY29tcElkKCk6IERHLkNvbHVtbjxzdHJpbmc+O1xuICBnZXQgc2VxSWQoKTogREcuQ29sdW1uPG51bWJlcj47XG4gIGdldCBsYWJlbCgpOiBERy5Db2x1bW48c3RyaW5nPlxuICBnZXQgc2VxKCk6IERHLkNvbHVtbjxzdHJpbmc+O1xuICBnZXQgZnJhbWUoKTogREcuQ29sdW1uPG51bWJlcj47XG59O1xuXG5leHBvcnQgaW50ZXJmYWNlIElQZGJIZWxwZXIge1xuICBwZGJUb0RmKHBkYjogc3RyaW5nLCBuYW1lOiBzdHJpbmcpOiBQcm9taXNlPFBkYlJlc0RhdGFGcmFtZVR5cGU+O1xufVxuXG5leHBvcnQgYXN5bmMgZnVuY3Rpb24gZ2V0UGRiSGVscGVyKCk6IFByb21pc2U8SVBkYkhlbHBlcj4ge1xuICBjb25zdCBwYWNrYWdlTmFtZSA9ICdCaW9zdHJ1Y3R1cmVWaWV3ZXInO1xuICBjb25zdCBmdW5jTGlzdCA9IERHLkZ1bmMuZmluZCh7cGFja2FnZTogcGFja2FnZU5hbWUsIG5hbWU6ICdnZXRQZGJIZWxwZXInfSk7XG4gIGlmIChmdW5jTGlzdC5sZW5ndGggPT09IDApXG4gICAgdGhyb3cgbmV3IEVycm9yKGBQYWNrYWdlICcke3BhY2thZ2VOYW1lfScgbXVzdCBiZSBpbnN0YWxsZWQgZm9yIFBkYkhlbHBlci5gKTtcblxuICBjb25zdCByZXM6IElQZGJIZWxwZXIgPSAoYXdhaXQgZnVuY0xpc3RbMF0ucHJlcGFyZSgpLmNhbGwoKSkuZ2V0T3V0cHV0UGFyYW1WYWx1ZSgpIGFzIElQZGJIZWxwZXI7XG4gIHJldHVybiByZXM7XG59XG4iXX0=
package/src/viewers/molstar-viewer.d.ts ADDED
@@ -0,0 +1,10 @@
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+ import * as DG from 'datagrok-api/dg';
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+ import { IViewer } from './viewer';
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+ import { PdbResDataFrameType } from '../pdb/pdb-helper';
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+ export interface IMolstarViewer extends IViewer {
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+ setData(df: PdbResDataFrameType | DG.DataFrame): void;
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+ }
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+ export interface ISaguaroViewer extends IViewer {
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+ setData(df: PdbResDataFrameType | DG.DataFrame): void;
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+ }
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+ //# sourceMappingURL=molstar-viewer.d.ts.map
package/src/viewers/molstar-viewer.d.ts.map ADDED
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+ {"version":3,"file":"molstar-viewer.d.ts","sourceRoot":"","sources":["molstar-viewer.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAItC,OAAO,EAAC,OAAO,EAAC,MAAM,UAAU,CAAC;AACjC,OAAO,EAAC,mBAAmB,EAAC,MAAM,mBAAmB,CAAC;AAEtD,MAAM,WAAW,cAAe,SAAQ,OAAO;IAC7C,OAAO,CAAC,EAAE,EAAE,mBAAmB,GAAG,EAAE,CAAC,SAAS,GAAG,IAAI,CAAC;CACvD;AAED,MAAM,WAAW,cAAe,SAAQ,OAAO;IAC7C,OAAO,CAAC,EAAE,EAAE,mBAAmB,GAAG,EAAE,CAAC,SAAS,GAAG,IAAI,CAAC;CACvD"}
package/src/viewers/molstar-viewer.js ADDED
@@ -0,0 +1,2 @@
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+ export {};
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+ //# sourceMappingURL=data:application/json;base64,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