@datagrok-libraries/bio 5.22.1 → 5.22.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (4) hide show
  1. package/package.json +1 -1
  2. package/src/trees/distance-matrix.d.ts +5 -1
  3. package/src/trees/distance-matrix.d.ts.map +1 -1
  4. package/src/trees/distance-matrix.js +1 -1
package/package.json CHANGED
@@ -4,7 +4,7 @@
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  "access": "public"
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  },
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  "friendlyName": "Datagrok bio library",
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- "version": "5.22.1",
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+ "version": "5.22.2",
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  "description": "",
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  "dependencies": {
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  "@datagrok-libraries/gridext": "^1.3.22",
package/src/trees/distance-matrix.d.ts CHANGED
@@ -12,6 +12,10 @@ export declare class DistanceMatrix {
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  private _linearizeIJ;
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  get(i: number, j: number): number;
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  set(i: number, j: number, value: number): void;
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- static calc<TObj>(list: TObj[], method: (a: TObj, b: TObj) => number): DistanceMatrix;
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+ static calc<TObj>(list: Indexable<TObj>, method: (a: TObj, b: TObj) => number): DistanceMatrix;
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+ }
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+ export interface Indexable<TObj> {
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+ [index: number]: TObj;
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+ get length(): number;
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  }
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  //# sourceMappingURL=distance-matrix.d.ts.map
package/src/trees/distance-matrix.d.ts.map CHANGED
@@ -1 +1 @@
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- {"version":3,"file":"distance-matrix.d.ts","sourceRoot":"","sources":["distance-matrix.ts"],"names":[],"mappings":"AAIA,2FAA2F;AAC3F,qBAAa,cAAc;IACzB,KAAK,EAAE,YAAY,CAAC;IACpB,KAAK,EAAE,MAAM,CAAC;IAEd,IAAI,IAAI,IAAI,YAAY,CAAuB;IAE/C,IAAI,IAAI,IAAI,MAAM,CAAuB;IAEzC;;;OAGG;gBACS,IAAI,CAAC,EAAE,YAAY,EAAE,IAAI,CAAC,EAAE,MAAM;IAqB9C,OAAO,CAAC,YAAY;IAKpB,GAAG,CAAC,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM;IASxB,GAAG,CAAC,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM;IAIvC,MAAM,CAAC,IAAI,CAAC,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,EAAE,MAAM,EAAE,CAAC,CAAC,EAAE,IAAI,EAAE,CAAC,EAAE,IAAI,KAAK,MAAM,GAAG,cAAc;CAStF"}
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+ {"version":3,"file":"distance-matrix.d.ts","sourceRoot":"","sources":["distance-matrix.ts"],"names":[],"mappings":"AAIA,2FAA2F;AAC3F,qBAAa,cAAc;IACzB,KAAK,EAAE,YAAY,CAAC;IACpB,KAAK,EAAE,MAAM,CAAC;IAEd,IAAI,IAAI,IAAI,YAAY,CAAuB;IAE/C,IAAI,IAAI,IAAI,MAAM,CAAuB;IAEzC;;;OAGG;gBACS,IAAI,CAAC,EAAE,YAAY,EAAE,IAAI,CAAC,EAAE,MAAM;IAqB9C,OAAO,CAAC,YAAY;IAKpB,GAAG,CAAC,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM;IASxB,GAAG,CAAC,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM;IAIvC,MAAM,CAAC,IAAI,CAAC,IAAI,EAAE,IAAI,EAAE,SAAS,CAAC,IAAI,CAAC,EAAE,MAAM,EAAE,CAAC,CAAC,EAAE,IAAI,EAAE,CAAC,EAAE,IAAI,KAAK,MAAM,GAAG,cAAc;CAS/F;AAED,MAAM,WAAW,SAAS,CAAC,IAAI;IAC7B,CAAC,KAAK,EAAE,MAAM,GAAG,IAAI,CAAC;IACtB,IAAI,MAAM,IAAI,MAAM,CAAC;CACtB"}
package/src/trees/distance-matrix.js CHANGED
@@ -54,4 +54,4 @@ export class DistanceMatrix {
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  return res;
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  }
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  }
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- //# sourceMappingURL=data:application/json;base64,eyJ2ZXJzaW9uIjozLCJmaWxlIjoiZGlzdGFuY2UtbWF0cml4LmpzIiwic291cmNlUm9vdCI6IiIsInNvdXJjZXMiOlsiZGlzdGFuY2UtbWF0cml4LnRzIl0sIm5hbWVzIjpbXSwibWFwcGluZ3MiOiJBQUlBLDJGQUEyRjtBQUMzRixNQUFNLE9BQU8sY0FBYztJQUl6QixJQUFJLElBQUksS0FBbUIsT0FBTyxJQUFJLENBQUMsS0FBSyxDQUFDLENBQUMsQ0FBQztJQUUvQyxJQUFJLElBQUksS0FBYSxPQUFPLElBQUksQ0FBQyxLQUFLLENBQUMsQ0FBQyxDQUFDO0lBRXpDOzs7T0FHRztJQUNILFlBQVksSUFBbUIsRUFBRSxJQUFhO1FBQzVDLElBQUksSUFBSSxJQUFJLFNBQVMsRUFBRTtZQUNyQixJQUFJLElBQUksSUFBSSxTQUFTO2dCQUFFLE1BQU0sSUFBSSxLQUFLLENBQUMsNENBQTRDLENBQUMsQ0FBQztZQUVyRixJQUFJLENBQUMsS0FBSyxHQUFHLElBQUssQ0FBQztZQUNuQixJQUFJLENBQUMsS0FBSyxHQUFHLENBQUMsQ0FBQyxHQUFHLElBQUksQ0FBQyxJQUFJLENBQUMsQ0FBQyxHQUFHLENBQUMsR0FBRyxDQUFDLEdBQUcsSUFBSSxDQUFDLEtBQUssQ0FBQyxNQUFNLENBQUMsQ0FBQyxHQUFHLENBQUMsQ0FBQztZQUNoRSxJQUFJLElBQUksQ0FBQyxLQUFLLElBQUksSUFBSSxDQUFDLEtBQUssQ0FBQyxJQUFJLENBQUMsS0FBSyxDQUFDO2dCQUN0QyxNQUFNLElBQUksS0FBSyxDQUFDLHVCQUF1QixJQUFJLENBQUMsS0FBSyxDQUFDLE1BQU0sOEJBQThCLElBQUksQ0FBQyxLQUFLLEVBQUUsQ0FBQyxDQUFDO1NBQ3ZHO2FBQU07WUFDTCxJQUFJLENBQUMsS0FBSyxHQUFHLElBQUksQ0FBQztZQUNsQixNQUFNLFVBQVUsR0FBVyxJQUFJLEdBQUcsQ0FBQyxJQUFJLEdBQUcsQ0FBQyxDQUFDLEdBQUcsQ0FBQyxDQUFDO1lBQ2pELElBQUksSUFBSSxFQUFFO2dCQUNSLElBQUksSUFBSSxDQUFDLE1BQU0sSUFBSSxVQUFVO29CQUMzQixNQUFNLElBQUksS0FBSyxDQUFDLDBDQUEwQyxJQUFJLHlCQUF5QixVQUFVLEdBQUcsQ0FBQyxDQUFDO2dCQUN4RyxJQUFJLENBQUMsS0FBSyxHQUFHLElBQUksQ0FBQzthQUNuQjtpQkFBTTtnQkFDTCxJQUFJLENBQUMsS0FBSyxHQUFHLElBQUksWUFBWSxDQUFDLFVBQVUsQ0FBQyxDQUFDO2FBQzNDO1NBQ0Y7SUFDSCxDQUFDO0lBRU8sWUFBWSxDQUFDLENBQVMsRUFBRSxDQUFTO1FBQ3ZDLElBQUksQ0FBQyxDQUFDLENBQUMsR0FBRyxDQUFDLENBQUM7WUFBRSxNQUFNLElBQUksS0FBSyxDQUFDLHVCQUF1QixDQUFDLENBQUM7UUFDdkQsT0FBTyxJQUFJLENBQUMsS0FBSyxHQUFHLENBQUMsR0FBRyxDQUFDLEdBQUcsSUFBSSxDQUFDLEtBQUssQ0FBQyxDQUFDLENBQUMsQ0FBQyxHQUFHLENBQUMsQ0FBQyxHQUFHLENBQUMsQ0FBQyxHQUFHLENBQUMsQ0FBQyxDQUFDLEdBQUcsQ0FBQyxDQUFDLENBQUM7SUFDbEUsQ0FBQztJQUVELEdBQUcsQ0FBQyxDQUFTLEVBQUUsQ0FBUztRQUN0QixJQUFJLENBQUMsSUFBSSxDQUFDO1lBQ1IsT0FBTyxDQUFDLENBQUM7YUFDTixJQUFJLENBQUMsR0FBRyxDQUFDO1lBQ1osT0FBTyxJQUFJLENBQUMsS0FBSyxDQUFDLElBQUksQ0FBQyxZQUFZLENBQUMsQ0FBQyxFQUFFLENBQUMsQ0FBQyxDQUFDLENBQUM7O1lBRTNDLE9BQU8sSUFBSSxDQUFDLEtBQUssQ0FBQyxJQUFJLENBQUMsWUFBWSxDQUFDLENBQUMsRUFBRSxDQUFDLENBQUMsQ0FBQyxDQUFDO0lBQy9DLENBQUM7SUFFRCxHQUFHLENBQUMsQ0FBUyxFQUFFLENBQVMsRUFBRSxLQUFhO1FBQ3JDLElBQUksQ0FBQyxLQUFLLENBQUMsSUFBSSxDQUFDLFlBQVksQ0FBQyxDQUFDLEVBQUUsQ0FBQyxDQUFDLENBQUMsR0FBRyxLQUFLLENBQUM7SUFDOUMsQ0FBQztJQUVELE1BQU0sQ0FBQyxJQUFJLENBQU8sSUFBWSxFQUFFLE1BQW9DO1FBQ2xFLE1BQU0sSUFBSSxHQUFXLElBQUksQ0FBQyxNQUFNLENBQUM7UUFDakMsTUFBTSxHQUFHLEdBQUcsSUFBSSxjQUFjLENBQUMsU0FBUyxFQUFFLElBQUksQ0FBQyxDQUFDO1FBQ2hELEtBQUssSUFBSSxDQUFDLEdBQUcsQ0FBQyxFQUFFLENBQUMsR0FBRyxJQUFJLEVBQUUsQ0FBQyxFQUFFLEVBQUU7WUFDN0IsS0FBSyxJQUFJLENBQUMsR0FBRyxDQUFDLEdBQUcsQ0FBQyxFQUFFLENBQUMsR0FBRyxJQUFJLEVBQUUsQ0FBQyxFQUFFO2dCQUMvQixHQUFHLENBQUMsR0FBRyxDQUFDLENBQUMsRUFBRSxDQUFDLEVBQUUsTUFBTSxDQUFDLElBQUksQ0FBQyxDQUFDLENBQUMsRUFBRSxJQUFJLENBQUMsQ0FBQyxDQUFDLENBQUMsQ0FBQyxDQUFDO1NBQzNDO1FBQ0QsT0FBTyxHQUFHLENBQUM7SUFDYixDQUFDO0NBQ0YiLCJzb3VyY2VzQ29udGVudCI6WyJpbXBvcnQgKiBhcyBncm9rIGZyb20gJ2RhdGFncm9rLWFwaS9ncm9rJztcbmltcG9ydCAqIGFzIHVpIGZyb20gJ2RhdGFncm9rLWFwaS91aSc7XG5pbXBvcnQgKiBhcyBERyBmcm9tICdkYXRhZ3Jvay1hcGkvZGcnO1xuXG4vKiogRGlzdGFuY2UgbWF0cml4IGNsYXNzIGNvbXBhdGlibGUgd2l0aCBkYXRhIHN0cnVjdHVyZSBvZiBzY2lweS5zcGF0aWFsLmRpc3RhbmNlLnBkaXN0ICovXG5leHBvcnQgY2xhc3MgRGlzdGFuY2VNYXRyaXgge1xuICBfZGF0YTogRmxvYXQzMkFycmF5O1xuICBfc2l6ZTogbnVtYmVyO1xuXG4gIGdldCBkYXRhKCk6IEZsb2F0MzJBcnJheSB7IHJldHVybiB0aGlzLl9kYXRhOyB9XG5cbiAgZ2V0IHNpemUoKTogbnVtYmVyIHsgcmV0dXJuIHRoaXMuX3NpemU7IH1cblxuICAvKipcbiAgICogQHBhcmFtIHtGbG9hdDY0QXJyYXl9IGRhdGEgIERpc3RhbmNlIGRhdGFcbiAgICogQHBhcmFtIHtudW1iZXJ9IG0gICAgICAgICAgIE51bWJlciBvZiBvcmlnaW5hbCBvYnNlcnZhdGlvbnNcbiAgICovXG4gIGNvbnN0cnVjdG9yKGRhdGE/OiBGbG9hdDMyQXJyYXksIHNpemU/OiBudW1iZXIpIHtcbiAgICBpZiAoc2l6ZSA9PSB1bmRlZmluZWQpIHtcbiAgICAgIGlmIChkYXRhID09IHVuZGVmaW5lZCkgdGhyb3cgbmV3IEVycm9yKCdBcmd1bWVudHMgZXJyb3I6IGRhdGEgb3Igc2l6ZSBpcyByZXF1aXJlZC4nKTtcblxuICAgICAgdGhpcy5fZGF0YSA9IGRhdGEhO1xuICAgICAgdGhpcy5fc2l6ZSA9ICgxICsgTWF0aC5zcXJ0KDEgKyA0ICogMiAqIHRoaXMuX2RhdGEubGVuZ3RoKSkgLyAyO1xuICAgICAgaWYgKHRoaXMuX3NpemUgIT0gTWF0aC5mbG9vcih0aGlzLl9zaXplKSlcbiAgICAgICAgdGhyb3cgbmV3IEVycm9yKGBJbnZhbGlkIGRhdGEgbGVuZ3RoICR7dGhpcy5fZGF0YS5sZW5ndGh9IGxlYWRzIHRvIG5vbiBpbnRlZ2VyIHNpemUgJHt0aGlzLl9zaXplfWApO1xuICAgIH0gZWxzZSB7XG4gICAgICB0aGlzLl9zaXplID0gc2l6ZTtcbiAgICAgIGNvbnN0IGRhdGFMZW5ndGg6IG51bWJlciA9IHNpemUgKiAoc2l6ZSAtIDEpIC8gMjtcbiAgICAgIGlmIChkYXRhKSB7XG4gICAgICAgIGlmIChkYXRhLmxlbmd0aCAhPSBkYXRhTGVuZ3RoKVxuICAgICAgICAgIHRocm93IG5ldyBFcnJvcihgSW52YWxpZCBkYXRhIGxlbmd0aC4gT2JzZXJ2YXRpb25zIHNpemUgJHtzaXplfSByZXF1aXJlcyBkYXRhIGxlbmd0aCAke2RhdGFMZW5ndGh9LmApO1xuICAgICAgICB0aGlzLl9kYXRhID0gZGF0YTtcbiAgICAgIH0gZWxzZSB7XG4gICAgICAgIHRoaXMuX2RhdGEgPSBuZXcgRmxvYXQzMkFycmF5KGRhdGFMZW5ndGgpO1xuICAgICAgfVxuICAgIH1cbiAgfVxuXG4gIHByaXZhdGUgX2xpbmVhcml6ZUlKKGk6IG51bWJlciwgajogbnVtYmVyKTogbnVtYmVyIHtcbiAgICBpZiAoIShpIDwgaikpIHRocm93IG5ldyBFcnJvcignaSBtdXN0IGJlIGxlc3MgdGhhbiBqJyk7XG4gICAgcmV0dXJuIHRoaXMuX3NpemUgKiBpICsgaiAtIE1hdGguZmxvb3IoKChpICsgMikgKiAoaSArIDEpKSAvIDIpO1xuICB9XG5cbiAgZ2V0KGk6IG51bWJlciwgajogbnVtYmVyKSB7XG4gICAgaWYgKGkgPT0gailcbiAgICAgIHJldHVybiAwO1xuICAgIGVsc2UgaWYgKGkgPCBqKVxuICAgICAgcmV0dXJuIHRoaXMuX2RhdGFbdGhpcy5fbGluZWFyaXplSUooaSwgaildO1xuICAgIGVsc2VcbiAgICAgIHJldHVybiB0aGlzLl9kYXRhW3RoaXMuX2xpbmVhcml6ZUlKKGosIGkpXTtcbiAgfVxuXG4gIHNldChpOiBudW1iZXIsIGo6IG51bWJlciwgdmFsdWU6IG51bWJlcikge1xuICAgIHRoaXMuX2RhdGFbdGhpcy5fbGluZWFyaXplSUooaSwgaildID0gdmFsdWU7XG4gIH1cblxuICBzdGF0aWMgY2FsYzxUT2JqPihsaXN0OiBUT2JqW10sIG1ldGhvZDogKGE6IFRPYmosIGI6IFRPYmopID0+IG51bWJlcik6IERpc3RhbmNlTWF0cml4IHtcbiAgICBjb25zdCBzaXplOiBudW1iZXIgPSBsaXN0Lmxlbmd0aDtcbiAgICBjb25zdCByZXMgPSBuZXcgRGlzdGFuY2VNYXRyaXgodW5kZWZpbmVkLCBzaXplKTtcbiAgICBmb3IgKGxldCBpID0gMDsgaSA8IHNpemU7IGkrKykge1xuICAgICAgZm9yIChsZXQgaiA9IGkgKyAxOyBqIDwgc2l6ZTsgaisrKVxuICAgICAgICByZXMuc2V0KGksIGosIG1ldGhvZChsaXN0W2ldLCBsaXN0W2pdKSk7XG4gICAgfVxuICAgIHJldHVybiByZXM7XG4gIH1cbn1cbiJdfQ==
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+ //# 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