@datagrok-libraries/bio 5.18.0 → 5.20.0

package/package.json

@@ -4,7 +4,7 @@
     "access": "public"
   },
   "friendlyName": "Datagrok bio library",
-  "version": "5.18.0",
+  "version": "5.20.0",
   "description": "",
   "dependencies": {
     "@datagrok-libraries/gridext": "^1.3.22",

package/src/vd-regions.d.ts

@@ -1,3 +1,5 @@
+import * as DG from 'datagrok-api/dg';
+import { IViewer } from './viewers/viewer';
 export declare enum VdRegionType {
     Unknown = "unknown",
     FR = "framework",
@@ -24,4 +26,9 @@ export declare class VdRegion {
      */
     constructor(type: VdRegionType, name: string, chain: string, order: number, positionStartName: string, positionEndName: string);
 }
+/** Interface for VdRegionsViewer from @datagrok/bio to unbind dependency to Bio package */
+export interface IVdRegionsViewer extends IViewer {
+    init(): Promise<void>;
+    setDf(mlbDf: DG.DataFrame, regions: VdRegion[]): Promise<void>;
+}
 //# sourceMappingURL=vd-regions.d.ts.map

package/src/vd-regions.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"vd-regions.d.ts","sourceRoot":"","sources":["vd-regions.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAEtC,OAAO,EAAC,OAAO,EAAC,MAAM,kBAAkB,CAAC;AAIzC,oBAAY,YAAY;IACtB,OAAO,YAAY;IACnB,EAAE,cAAc;IAChB,GAAG,QAAQ;CACZ;AAED;;GAEG;AACH,qBAAa,QAAQ;IACnB,IAAI,EAAE,YAAY,CAAC;IACnB,IAAI,EAAE,MAAM,CAAC;IACb,KAAK,EAAE,MAAM,CAAC;IACd,KAAK,EAAE,MAAM,CAAC;IACd,iBAAiB,EAAE,MAAM,CAAC;IAC1B,eAAe,EAAE,MAAM,CAAC;IAExB;;;;;;;;OAQG;gBACS,IAAI,EAAE,YAAY,EAAE,IAAI,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,EACxE,iBAAiB,EAAE,MAAM,EAAE,eAAe,EAAE,MAAM;CAQrD;AAED,2FAA2F;AAC3F,MAAM,WAAW,gBAAiB,SAAQ,OAAO;IAC/C,IAAI,IAAI,OAAO,CAAC,IAAI,CAAC,CAAC;IAEtB,KAAK,CAAC,KAAK,EAAE,EAAE,CAAC,SAAS,EAAE,OAAO,EAAE,QAAQ,EAAE,GAAG,OAAO,CAAC,IAAI,CAAC,CAAC;CAChE"}

package/src/vd-regions.js

@@ -27,4 +27,4 @@ export class VdRegion {
         this.positionEndName = positionEndName;
     }
 }
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package/index.d.ts

@@ -1,30 +0,0 @@
-import { Aminoacids, AminoacidsPalettes } from './src/aminoacids';
-import { MonomerWorks } from './src/monomer-works/monomer-works';
-import { Nucleotides, NucleotidesPalettes } from './src/nucleotides';
-import { SeqPalette, SeqPaletteBase } from './src/seq-palettes';
-import { UnknownSeqPalette, UnknownSeqPalettes } from './src/unknown';
-import { DrawStyle, printLeftOrCentered } from './src/utils/cell-renderer';
-import { FastaFileHandler } from './src/utils/fasta-handler';
-import { NotationConverter } from './src/utils/notation-converter';
-import { splitAlignedSequences } from './src/utils/splitter';
-import { UnitsHandler } from './src/utils/units-handler';
-import { VdRegion, VdRegionType } from './src/vd-regions';
-import { CanvasCallback, getPhylocanvasGlService, IPhylocanvasGlViewer, NodeStyleType, PhylocanvasGlServiceBase, PhylocanvasGlTask, StylesType, TreeTypesNames } from './src/viewers/phylocanvas-gl-viewer';
-import { IVdRegionsViewer } from './src/viewers/vd-regions-viewer';
-import { PositionHeight, PositionInfo, PositionMonomerInfo, WebLogoViewer } from './src/viewers/web-logo-viewer';
-import { MonomerLib } from './src/monomer-works/monomer-lib';
-import { readLibrary } from './src/monomer-works/monomer-utils';
-import { getNglGlService, NglGlServiceBase, NglGlTask } from './src/viewers/ngl-gl-viewer';
-import { parseNewick, PhylocanvasTreeNode } from './src/trees/phylocanvas';
-import { isLeaf } from './src/trees';
-export { DistanceMatrix } from './src/trees/distance-matrix';
-export { ALIGNMENT, ALPHABET, NOTATION, TAGS, getSplitter, splitterAsFasta, getSplitterForColumn, SplitterFunc, monomerToShort, splitterAsHelm, getStats, pickUpPalette, getPaletteByType, getAlphabet, getAlphabetSimilarity } from './src/utils/macromolecule';
-export { IMonomerLib, Monomer } from './src/types';
-export { NodeType, NodeCuttedType } from './src/trees';
-export { NO_NAME_ROOT } from './src/trees/phylocanvas';
-export { ITreeHelper, getTreeHelper } from './src/trees/tree-helper';
-export { IPdbHelper, getPdbHelper } from './src/pdb/pdb-helper';
-export { getDendrogramService } from './src/trees/dendrogram';
-export { Shapes, TreeTypes } from './src/trees/phylocanvas';
-export { NotationConverter, splitAlignedSequences, SeqPalette, SeqPaletteBase, Aminoacids, AminoacidsPalettes, Nucleotides, NucleotidesPalettes, UnknownSeqPalettes, UnknownSeqPalette, PositionHeight, PositionInfo, PositionMonomerInfo, WebLogoViewer, UnitsHandler, DrawStyle, printLeftOrCentered, FastaFileHandler, VdRegionType, VdRegion, IVdRegionsViewer, isLeaf, PhylocanvasTreeNode, NodeStyleType, StylesType, IPhylocanvasGlViewer, TreeTypesNames, PhylocanvasGlServiceBase, CanvasCallback, PhylocanvasGlTask, getPhylocanvasGlService, parseNewick, getNglGlService, NglGlServiceBase, NglGlTask, MonomerWorks, MonomerLib, readLibrary };
-//# sourceMappingURL=index.d.ts.map

package/index.d.ts.map

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package/index.js

@@ -1,32 +0,0 @@
-import { Aminoacids, AminoacidsPalettes } from './src/aminoacids';
-import { MonomerWorks } from './src/monomer-works/monomer-works';
-import { Nucleotides, NucleotidesPalettes } from './src/nucleotides';
-import { SeqPaletteBase } from './src/seq-palettes';
-import { UnknownSeqPalette, UnknownSeqPalettes } from './src/unknown';
-import { DrawStyle, printLeftOrCentered } from './src/utils/cell-renderer';
-import { FastaFileHandler } from './src/utils/fasta-handler';
-import { NotationConverter } from './src/utils/notation-converter';
-import { splitAlignedSequences } from './src/utils/splitter';
-import { UnitsHandler } from './src/utils/units-handler';
-import { VdRegion, VdRegionType } from './src/vd-regions';
-import { getPhylocanvasGlService, PhylocanvasGlServiceBase, TreeTypesNames } from './src/viewers/phylocanvas-gl-viewer';
-import { PositionHeight, PositionInfo, PositionMonomerInfo, WebLogoViewer } from './src/viewers/web-logo-viewer';
-import { MonomerLib } from './src/monomer-works/monomer-lib';
-import { readLibrary } from './src/monomer-works/monomer-utils';
-import { getNglGlService, NglGlServiceBase } from './src/viewers/ngl-gl-viewer';
-import { parseNewick } from './src/trees/phylocanvas';
-import { isLeaf } from './src/trees';
-export { DistanceMatrix } from './src/trees/distance-matrix';
-export { getSplitter, splitterAsFasta, getSplitterForColumn, monomerToShort, splitterAsHelm, getStats, pickUpPalette, getPaletteByType, getAlphabet, getAlphabetSimilarity } from './src/utils/macromolecule';
-export { NO_NAME_ROOT } from './src/trees/phylocanvas';
-export { getTreeHelper } from './src/trees/tree-helper';
-export { getPdbHelper } from './src/pdb/pdb-helper';
-export { getDendrogramService } from './src/trees/dendrogram';
-export { Shapes, TreeTypes } from './src/trees/phylocanvas';
-export { NotationConverter, splitAlignedSequences, SeqPaletteBase, Aminoacids, AminoacidsPalettes, Nucleotides, NucleotidesPalettes, UnknownSeqPalettes, UnknownSeqPalette, PositionHeight, PositionInfo, PositionMonomerInfo, WebLogoViewer, UnitsHandler, DrawStyle, printLeftOrCentered, FastaFileHandler, VdRegionType, VdRegion, isLeaf, TreeTypesNames, PhylocanvasGlServiceBase, getPhylocanvasGlService, parseNewick, 
-// Utils,
-// Newick,
-getNglGlService, NglGlServiceBase, 
-//Monomer lib and features
-MonomerWorks, MonomerLib, readLibrary };
-//# sourceMappingURL=data:application/json;base64,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

package/index.ts

@@ -1,138 +0,0 @@
-import {Aminoacids, AminoacidsPalettes} from './src/aminoacids';
-import {MonomerWorks} from './src/monomer-works/monomer-works';
-import {Nucleotides, NucleotidesPalettes} from './src/nucleotides';
-import {SeqPalette, SeqPaletteBase} from './src/seq-palettes';
-import {UnknownSeqPalette, UnknownSeqPalettes} from './src/unknown';
-import {DrawStyle, printLeftOrCentered} from './src/utils/cell-renderer';
-import {FastaFileHandler} from './src/utils/fasta-handler';
-import {NotationConverter} from './src/utils/notation-converter';
-import {splitAlignedSequences} from './src/utils/splitter';
-import {getTreeHelper, ITreeHelper} from './src/trees/tree-helper';
-import {UnitsHandler} from './src/utils/units-handler';
-import {VdRegion, VdRegionType} from './src/vd-regions';
-import {
-  CanvasCallback,
-  getPhylocanvasGlService,
-  IPhylocanvasGlViewer,
-  NodeStyleType,
-  PhylocanvasGlServiceBase,
-  PhylocanvasGlTask,
-  StylesType,
-  TreeTypesNames
-} from './src/viewers/phylocanvas-gl-viewer';
-import {IVdRegionsViewer} from './src/viewers/vd-regions-viewer';
-import {PositionHeight, PositionInfo, PositionMonomerInfo, WebLogoViewer} from './src/viewers/web-logo-viewer';
-import {MonomerLib} from './src/monomer-works/monomer-lib';
-import {readLibrary} from './src/monomer-works/monomer-utils';
-import {
-  getNglGlService,
-  NglGlServiceBase,
-  NglGlTask
-} from './src/viewers/ngl-gl-viewer';
-
-import {parseNewick, PhylocanvasTreeNode} from './src/trees/phylocanvas';
-import {isLeaf} from './src/trees';
-
-export {
-  DistanceMatrix
-} from './src/trees/distance-matrix';
-
-export {
-  ALIGNMENT,
-  ALPHABET,
-  NOTATION,
-  TAGS,
-  getSplitter,
-  splitterAsFasta,
-  getSplitterForColumn,
-  SplitterFunc,
-  monomerToShort,
-  splitterAsHelm,
-  getStats,
-  pickUpPalette,
-  getPaletteByType,
-  getAlphabet,
-  getAlphabetSimilarity
-} from './src/utils/macromolecule';
-
-export {
-  IMonomerLib,
-  Monomer
-} from './src/types';
-
-export {
-  NodeType,
-  NodeCuttedType
-} from './src/trees';
-
-export {
-  NO_NAME_ROOT
-} from './src/trees/phylocanvas';
-
-export {
-  ITreeHelper,
-  getTreeHelper
-} from './src/trees/tree-helper';
-
-export {
-  IPdbHelper,
-  getPdbHelper
-} from './src/pdb/pdb-helper';
-
-export {
-  getDendrogramService
-} from './src/trees/dendrogram';
-
-export {
-  Shapes,
-  TreeTypes
-} from './src/trees/phylocanvas';
-
-export {
-  NotationConverter,
-  splitAlignedSequences,
-  SeqPalette,
-  SeqPaletteBase,
-  Aminoacids,
-  AminoacidsPalettes,
-  Nucleotides,
-  NucleotidesPalettes,
-  UnknownSeqPalettes,
-  UnknownSeqPalette,
-  PositionHeight,
-  PositionInfo,
-  PositionMonomerInfo,
-  WebLogoViewer,
-  UnitsHandler,
-  DrawStyle,
-  printLeftOrCentered,
-  FastaFileHandler,
-  VdRegionType,
-  VdRegion,
-  IVdRegionsViewer,
-
-  isLeaf,
-  PhylocanvasTreeNode,
-  // treeTraversal,
-  NodeStyleType, StylesType,
-
-  IPhylocanvasGlViewer,
-  TreeTypesNames,
-  PhylocanvasGlServiceBase,
-  CanvasCallback,
-  PhylocanvasGlTask,
-  getPhylocanvasGlService,
-
-  parseNewick,
-  // Utils,
-  // Newick,
-
-  getNglGlService,
-  NglGlServiceBase,
-  NglGlTask,
-
-  //Monomer lib and features
-  MonomerWorks,
-  MonomerLib,
-  readLibrary
-};

package/src/viewers/vd-regions-viewer.d.ts

@@ -1,9 +0,0 @@
-import * as DG from 'datagrok-api/dg';
-import { VdRegion } from '../vd-regions';
-import { IViewer } from './viewer';
-/** Interface for VdRegionsViewer from @datagrok/bio to unbind dependency to Bio package */
-export interface IVdRegionsViewer extends IViewer {
-    init(): Promise<void>;
-    setDf(mlbDf: DG.DataFrame, regions: VdRegion[]): Promise<void>;
-}
-//# sourceMappingURL=vd-regions-viewer.d.ts.map

package/src/viewers/vd-regions-viewer.d.ts.map

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package/src/viewers/vd-regions-viewer.js

@@ -1,2 +0,0 @@
-export {};
-//# sourceMappingURL=data:application/json;base64,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