@datagrok-libraries/bio 5.17.1 → 5.19.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (5) hide show
  1. package/package.json +1 -1
  2. package/index.d.ts +0 -31
  3. package/index.d.ts.map +0 -1
  4. package/index.js +0 -32
  5. package/index.ts +0 -143
package/package.json CHANGED
@@ -4,7 +4,7 @@
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  "access": "public"
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  },
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  "friendlyName": "Datagrok bio library",
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- "version": "5.17.1",
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+ "version": "5.19.0",
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  "description": "",
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  "dependencies": {
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  "@datagrok-libraries/gridext": "^1.3.22",
package/index.d.ts DELETED
@@ -1,31 +0,0 @@
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- import { Aminoacids, AminoacidsPalettes } from './src/aminoacids';
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- import { MonomerWorks } from './src/monomer-works/monomer-works';
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- import { Nucleotides, NucleotidesPalettes } from './src/nucleotides';
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- import { SeqPalette, SeqPaletteBase } from './src/seq-palettes';
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- import { UnknownSeqPalette, UnknownSeqPalettes } from './src/unknown';
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- import { DrawStyle, printLeftOrCentered } from './src/utils/cell-renderer';
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- import { FastaFileHandler } from './src/utils/fasta-handler';
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- import { NotationConverter } from './src/utils/notation-converter';
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- import { splitAlignedSequences } from './src/utils/splitter';
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- import { UnitsHandler } from './src/utils/units-handler';
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- import { VdRegion, VdRegionType } from './src/vd-regions';
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- import { CanvasCallback, getPhylocanvasGlService, IPhylocanvasGlViewer, NodeStyleType, PhylocanvasGlServiceBase, PhylocanvasGlTask, StylesType, TreeTypesNames } from './src/viewers/phylocanvas-gl-viewer';
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- import { IVdRegionsViewer } from './src/viewers/vd-regions-viewer';
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- import { PositionHeight, PositionInfo, PositionMonomerInfo, WebLogoViewer } from './src/viewers/web-logo-viewer';
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- import { MonomerLib } from './src/monomer-works/monomer-lib';
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- import { readLibrary } from './src/monomer-works/monomer-utils';
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- import { getNglGlService, NglGlServiceBase, NglGlTask } from './src/viewers/ngl-gl-viewer';
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- import { parseNewick, PhylocanvasTreeNode } from './src/trees/phylocanvas';
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- import { isLeaf } from './src/trees';
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- export { DistanceMatrix } from './src/trees/distance-matrix';
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- export { ALIGNMENT, ALPHABET, NOTATION, TAGS, getSplitter, splitterAsFasta, getSplitterForColumn, SplitterFunc, monomerToShort, splitterAsHelm, getStats, pickUpPalette, getPaletteByType, getAlphabet, getAlphabetSimilarity } from './src/utils/macromolecule';
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- export { IMonomerLib, Monomer } from './src/types';
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- export { NodeType, NodeCuttedType } from './src/trees';
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- export { NO_NAME_ROOT } from './src/trees/phylocanvas';
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- export { ITreeHelper, getTreeHelper } from './src/trees/tree-helper';
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- export { IPdbHelper, getPdbHelper } from './src/pdb/pdb-helper';
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- export type { IDendrogramService, TreeCutOptions } from './src/trees/dendrogram';
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- export { getDendrogramService } from './src/trees/dendrogram';
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- export { Shapes, TreeTypes } from './src/trees/phylocanvas';
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- export { NotationConverter, splitAlignedSequences, SeqPalette, SeqPaletteBase, Aminoacids, AminoacidsPalettes, Nucleotides, NucleotidesPalettes, UnknownSeqPalettes, UnknownSeqPalette, PositionHeight, PositionInfo, PositionMonomerInfo, WebLogoViewer, UnitsHandler, DrawStyle, printLeftOrCentered, FastaFileHandler, VdRegionType, VdRegion, IVdRegionsViewer, isLeaf, PhylocanvasTreeNode, NodeStyleType, StylesType, IPhylocanvasGlViewer, TreeTypesNames, PhylocanvasGlServiceBase, CanvasCallback, PhylocanvasGlTask, getPhylocanvasGlService, parseNewick, getNglGlService, NglGlServiceBase, NglGlTask, MonomerWorks, MonomerLib, readLibrary };
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- //# sourceMappingURL=index.d.ts.map
package/index.d.ts.map DELETED
@@ -1 +0,0 @@
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package/index.js DELETED
@@ -1,32 +0,0 @@
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- import { Aminoacids, AminoacidsPalettes } from './src/aminoacids';
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- import { MonomerWorks } from './src/monomer-works/monomer-works';
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- import { Nucleotides, NucleotidesPalettes } from './src/nucleotides';
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- import { SeqPaletteBase } from './src/seq-palettes';
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- import { UnknownSeqPalette, UnknownSeqPalettes } from './src/unknown';
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- import { DrawStyle, printLeftOrCentered } from './src/utils/cell-renderer';
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- import { FastaFileHandler } from './src/utils/fasta-handler';
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- import { NotationConverter } from './src/utils/notation-converter';
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- import { splitAlignedSequences } from './src/utils/splitter';
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- import { UnitsHandler } from './src/utils/units-handler';
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- import { VdRegion, VdRegionType } from './src/vd-regions';
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- import { getPhylocanvasGlService, PhylocanvasGlServiceBase, TreeTypesNames } from './src/viewers/phylocanvas-gl-viewer';
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- import { PositionHeight, PositionInfo, PositionMonomerInfo, WebLogoViewer } from './src/viewers/web-logo-viewer';
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- import { MonomerLib } from './src/monomer-works/monomer-lib';
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- import { readLibrary } from './src/monomer-works/monomer-utils';
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- import { getNglGlService, NglGlServiceBase } from './src/viewers/ngl-gl-viewer';
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- import { parseNewick } from './src/trees/phylocanvas';
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- import { isLeaf } from './src/trees';
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- export { DistanceMatrix } from './src/trees/distance-matrix';
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- export { getSplitter, splitterAsFasta, getSplitterForColumn, monomerToShort, splitterAsHelm, getStats, pickUpPalette, getPaletteByType, getAlphabet, getAlphabetSimilarity } from './src/utils/macromolecule';
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- export { NO_NAME_ROOT } from './src/trees/phylocanvas';
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- export { getTreeHelper } from './src/trees/tree-helper';
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- export { getPdbHelper } from './src/pdb/pdb-helper';
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- export { getDendrogramService } from './src/trees/dendrogram';
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- export { Shapes, TreeTypes } from './src/trees/phylocanvas';
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- export { NotationConverter, splitAlignedSequences, SeqPaletteBase, Aminoacids, AminoacidsPalettes, Nucleotides, NucleotidesPalettes, UnknownSeqPalettes, UnknownSeqPalette, PositionHeight, PositionInfo, PositionMonomerInfo, WebLogoViewer, UnitsHandler, DrawStyle, printLeftOrCentered, FastaFileHandler, VdRegionType, VdRegion, isLeaf, TreeTypesNames, PhylocanvasGlServiceBase, getPhylocanvasGlService, parseNewick,
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- // Utils,
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- // Newick,
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- getNglGlService, NglGlServiceBase,
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- //Monomer lib and features
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- MonomerWorks, MonomerLib, readLibrary };
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- //# sourceMappingURL=data:application/json;base64,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
package/index.ts DELETED
@@ -1,143 +0,0 @@
1
- import {Aminoacids, AminoacidsPalettes} from './src/aminoacids';
2
- import {MonomerWorks} from './src/monomer-works/monomer-works';
3
- import {Nucleotides, NucleotidesPalettes} from './src/nucleotides';
4
- import {SeqPalette, SeqPaletteBase} from './src/seq-palettes';
5
- import {UnknownSeqPalette, UnknownSeqPalettes} from './src/unknown';
6
- import {DrawStyle, printLeftOrCentered} from './src/utils/cell-renderer';
7
- import {FastaFileHandler} from './src/utils/fasta-handler';
8
- import {NotationConverter} from './src/utils/notation-converter';
9
- import {splitAlignedSequences} from './src/utils/splitter';
10
- import {getTreeHelper, ITreeHelper} from './src/trees/tree-helper';
11
- import {UnitsHandler} from './src/utils/units-handler';
12
- import {VdRegion, VdRegionType} from './src/vd-regions';
13
- import {
14
- CanvasCallback,
15
- getPhylocanvasGlService,
16
- IPhylocanvasGlViewer,
17
- NodeStyleType,
18
- PhylocanvasGlServiceBase,
19
- PhylocanvasGlTask,
20
- StylesType,
21
- TreeTypesNames
22
- } from './src/viewers/phylocanvas-gl-viewer';
23
- import {IVdRegionsViewer} from './src/viewers/vd-regions-viewer';
24
- import {PositionHeight, PositionInfo, PositionMonomerInfo, WebLogoViewer} from './src/viewers/web-logo-viewer';
25
- import {MonomerLib} from './src/monomer-works/monomer-lib';
26
- import {readLibrary} from './src/monomer-works/monomer-utils';
27
- import {
28
- getNglGlService,
29
- NglGlServiceBase,
30
- NglGlTask
31
- } from './src/viewers/ngl-gl-viewer';
32
-
33
- import {parseNewick, PhylocanvasTreeNode} from './src/trees/phylocanvas';
34
- import {isLeaf} from './src/trees';
35
-
36
- export {
37
- DistanceMatrix
38
- } from './src/trees/distance-matrix';
39
-
40
- export {
41
- ALIGNMENT,
42
- ALPHABET,
43
- NOTATION,
44
- TAGS,
45
- getSplitter,
46
- splitterAsFasta,
47
- getSplitterForColumn,
48
- SplitterFunc,
49
- monomerToShort,
50
- splitterAsHelm,
51
- getStats,
52
- pickUpPalette,
53
- getPaletteByType,
54
- getAlphabet,
55
- getAlphabetSimilarity
56
- } from './src/utils/macromolecule';
57
-
58
- export {
59
- IMonomerLib,
60
- Monomer
61
- } from './src/types';
62
-
63
- export {
64
- NodeType,
65
- NodeCuttedType
66
- } from './src/trees';
67
-
68
- export {
69
- NO_NAME_ROOT
70
- } from './src/trees/phylocanvas';
71
-
72
- export {
73
- ITreeHelper,
74
- getTreeHelper
75
- } from './src/trees/tree-helper';
76
-
77
- export {
78
- IPdbHelper,
79
- getPdbHelper
80
- } from './src/pdb/pdb-helper';
81
-
82
- export type {
83
- IDendrogramService,
84
- TreeCutOptions
85
- } from './src/trees/dendrogram';
86
-
87
- export {
88
- getDendrogramService
89
- } from './src/trees/dendrogram';
90
-
91
- export {
92
- Shapes,
93
- TreeTypes
94
- } from './src/trees/phylocanvas';
95
-
96
- export {
97
- NotationConverter,
98
- splitAlignedSequences,
99
- SeqPalette,
100
- SeqPaletteBase,
101
- Aminoacids,
102
- AminoacidsPalettes,
103
- Nucleotides,
104
- NucleotidesPalettes,
105
- UnknownSeqPalettes,
106
- UnknownSeqPalette,
107
- PositionHeight,
108
- PositionInfo,
109
- PositionMonomerInfo,
110
- WebLogoViewer,
111
- UnitsHandler,
112
- DrawStyle,
113
- printLeftOrCentered,
114
- FastaFileHandler,
115
- VdRegionType,
116
- VdRegion,
117
- IVdRegionsViewer,
118
-
119
- isLeaf,
120
- PhylocanvasTreeNode,
121
- // treeTraversal,
122
- NodeStyleType, StylesType,
123
-
124
- IPhylocanvasGlViewer,
125
- TreeTypesNames,
126
- PhylocanvasGlServiceBase,
127
- CanvasCallback,
128
- PhylocanvasGlTask,
129
- getPhylocanvasGlService,
130
-
131
- parseNewick,
132
- // Utils,
133
- // Newick,
134
-
135
- getNglGlService,
136
- NglGlServiceBase,
137
- NglGlTask,
138
-
139
- //Monomer lib and features
140
- MonomerWorks,
141
- MonomerLib,
142
- readLibrary
143
- };