@datagrok-libraries/bio 5.12.0 → 5.13.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/index.d.ts +1 -2
- package/index.d.ts.map +1 -1
- package/index.js +1 -1
- package/index.ts +0 -2
- package/package.json +1 -1
- package/src/utils/tree-helper.d.ts +19 -3
- package/src/utils/tree-helper.d.ts.map +1 -1
- package/src/utils/tree-helper.js +1 -1
- package/src/viewers/ngl-gl-viewer.js +3 -3
- package/src/utils/newick-helper.d.ts +0 -5
- package/src/utils/newick-helper.d.ts.map +0 -1
- package/src/utils/newick-helper.js +0 -2
package/index.d.ts
CHANGED
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@@ -9,7 +9,6 @@ import { UnknownSeqPalette, UnknownSeqPalettes } from './src/unknown';
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import { DrawStyle, printLeftOrCentered } from './src/utils/cell-renderer';
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import { FastaFileHandler } from './src/utils/fasta-handler';
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import { getSplitter, splitterAsFasta, getSplitterForColumn, SplitterFunc, monomerToShort, splitterAsHelm, getStats, pickUpPalette, getPaletteByType, getAlphabet, getAlphabetSimilarity, ALPHABET, NOTATION, TAGS, ALIGNMENT } from './src/utils/macromolecule';
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import { INewickHelper } from './src/utils/newick-helper';
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import { NotationConverter } from './src/utils/notation-converter';
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import { splitAlignedSequences } from './src/utils/splitter';
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import { getTreeHelper, ITreeHelper } from './src/utils/tree-helper';
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@@ -21,5 +20,5 @@ import { PositionHeight, PositionInfo, PositionMonomerInfo, WebLogoViewer } from
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import { MonomerLib } from './src/monomer-works/monomer-lib';
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import { readLibrary } from './src/monomer-works/monomer-utils';
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import { getNglGlService, NglGlServiceBase, NglGlTask } from './src/viewers/ngl-gl-viewer';
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-
export { ALIGNMENT, ALPHABET, NOTATION, TAGS, NotationConverter, SplitterFunc, getStats, getAlphabet, getAlphabetSimilarity, getSplitter, splitterAsFasta, splitterAsHelm, getSplitterForColumn, monomerToShort, splitAlignedSequences, SeqPalette, SeqPaletteBase, Aminoacids, AminoacidsPalettes, Nucleotides, NucleotidesPalettes, UnknownSeqPalettes, UnknownSeqPalette, pickUpPalette, getPaletteByType, PositionHeight, PositionInfo, PositionMonomerInfo, WebLogoViewer, UnitsHandler, DrawStyle, printLeftOrCentered, FastaFileHandler, VdRegionType, VdRegion, IVdRegionsViewer, NodeType, isLeaf, NodeCuttedType, PhylocanvasTreeNode, NodeStyleType, StylesType, IPhylocanvasGlViewer, TreeTypesNames, PhylocanvasGlServiceBase, CanvasCallback, PhylocanvasGlTask, getPhylocanvasGlService, PhylocanvasGL, Shapes, TreeTypes, Utils, Newick,
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+
export { ALIGNMENT, ALPHABET, NOTATION, TAGS, NotationConverter, SplitterFunc, getStats, getAlphabet, getAlphabetSimilarity, getSplitter, splitterAsFasta, splitterAsHelm, getSplitterForColumn, monomerToShort, splitAlignedSequences, SeqPalette, SeqPaletteBase, Aminoacids, AminoacidsPalettes, Nucleotides, NucleotidesPalettes, UnknownSeqPalettes, UnknownSeqPalette, pickUpPalette, getPaletteByType, PositionHeight, PositionInfo, PositionMonomerInfo, WebLogoViewer, UnitsHandler, DrawStyle, printLeftOrCentered, FastaFileHandler, VdRegionType, VdRegion, IVdRegionsViewer, NodeType, isLeaf, NodeCuttedType, PhylocanvasTreeNode, NodeStyleType, StylesType, IPhylocanvasGlViewer, TreeTypesNames, PhylocanvasGlServiceBase, CanvasCallback, PhylocanvasGlTask, getPhylocanvasGlService, PhylocanvasGL, Shapes, TreeTypes, Utils, Newick, ITreeHelper, getTreeHelper, getNglGlService, NglGlServiceBase, NglGlTask, Monomer, IMonomerLib, MonomerWorks, MonomerLib, readLibrary };
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//# sourceMappingURL=index.d.ts.map
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package/index.d.ts.map
CHANGED
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@@ -1 +1 @@
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1
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-
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{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["index.ts"],"names":[],"mappings":"AACA,OAAO,EAAC,mBAAmB,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,EAAE,SAAS,EAAC,MAAM,6BAA6B,CAAC;AAElG,OAAO,EAAC,aAAa,EAAC,MAAM,6BAA6B,CAAC;AAE1D,OAAO,EAAC,UAAU,EAAE,kBAAkB,EAAC,MAAM,kBAAkB,CAAC;AAChE,OAAO,EAAC,YAAY,EAAC,MAAM,mCAAmC,CAAC;AAC/D,OAAO,EAAC,WAAW,EAAE,mBAAmB,EAAC,MAAM,mBAAmB,CAAC;AACnE,OAAO,EAAC,UAAU,EAAE,cAAc,EAAC,MAAM,oBAAoB,CAAC;AAC9D,OAAO,EAAC,WAAW,EAAE,OAAO,EAAE,QAAQ,EAAE,MAAM,EAAE,cAAc,EAAC,MAAM,aAAa,CAAC;AACnF,OAAO,EAAC,iBAAiB,EAAE,kBAAkB,EAAC,MAAM,eAAe,CAAC;AACpE,OAAO,EAAC,SAAS,EAAE,mBAAmB,EAAC,MAAM,2BAA2B,CAAC;AACzE,OAAO,EAAC,gBAAgB,EAAC,MAAM,2BAA2B,CAAC;AAC3D,OAAO,EACL,WAAW,EACX,eAAe,EACf,oBAAoB,EACpB,YAAY,EACZ,cAAc,EACd,cAAc,EACd,QAAQ,EACR,aAAa,EACb,gBAAgB,EAChB,WAAW,EACX,qBAAqB,EACrB,QAAQ,EACR,QAAQ,EACR,IAAI,EACJ,SAAS,EACV,MAAM,2BAA2B,CAAC;AACnC,OAAO,EAAC,iBAAiB,EAAC,MAAM,gCAAgC,CAAC;AACjE,OAAO,EAAC,qBAAqB,EAAC,MAAM,sBAAsB,CAAC;AAC3D,OAAO,EAAC,aAAa,EAAE,WAAW,EAAC,MAAM,yBAAyB,CAAC;AACnE,OAAO,EAAC,YAAY,EAAC,MAAM,2BAA2B,CAAC;AACvD,OAAO,EAAC,QAAQ,EAAE,YAAY,EAAC,MAAM,kBAAkB,CAAC;AACxD,OAAO,EACL,cAAc,EACd,uBAAuB,EACvB,oBAAoB,EACpB,aAAa,EACb,wBAAwB,EACxB,iBAAiB,EACjB,UAAU,EACV,cAAc,EACf,MAAM,qCAAqC,CAAC;AAC7C,OAAO,EAAC,gBAAgB,EAAC,MAAM,iCAAiC,CAAC;AACjE,OAAO,EAAC,cAAc,EAAE,YAAY,EAAE,mBAAmB,EAAE,aAAa,EAAC,MAAM,+BAA+B,CAAC;AAC/G,OAAO,EAAC,UAAU,EAAC,MAAM,iCAAiC,CAAC;AAC3D,OAAO,EAAC,WAAW,EAAC,MAAM,mCAAmC,CAAC;AAC9D,OAAO,EACL,eAAe,EACf,gBAAgB,EAChB,SAAS,EACV,MAAM,6BAA6B,CAAC;AAErC,OAAO,EACL,SAAS,EACT,QAAQ,EACR,QAAQ,EACR,IAAI,EACJ,iBAAiB,EACjB,YAAY,EACZ,QAAQ,EACR,WAAW,EACX,qBAAqB,EACrB,WAAW,EACX,eAAe,EACf,cAAc,EACd,oBAAoB,EACpB,cAAc,EACd,qBAAqB,EACrB,UAAU,EACV,cAAc,EACd,UAAU,EACV,kBAAkB,EAClB,WAAW,EACX,mBAAmB,EACnB,kBAAkB,EAClB,iBAAiB,EACjB,aAAa,EACb,gBAAgB,EAChB,cAAc,EACd,YAAY,EACZ,mBAAmB,EACnB,aAAa,EACb,YAAY,EACZ,SAAS,EACT,mBAAmB,EACnB,gBAAgB,EAChB,YAAY,EACZ,QAAQ,EACR,gBAAgB,EAEhB,QAAQ,EAAE,MAAM,EAAE,cAAc,EAChC,mBAAmB,EACnB,aAAa,EAAE,UAAU,EAEzB,oBAAoB,EACpB,cAAc,EACd,wBAAwB,EACxB,cAAc,EACd,iBAAiB,EACjB,uBAAuB,EAEvB,aAAa,EACb,MAAM,EAAE,SAAS,EACjB,KAAK,EACL,MAAM,EACN,WAAW,EACX,aAAa,EAEb,eAAe,EACf,gBAAgB,EAChB,SAAS,EAGT,OAAO,EACP,WAAW,EACX,YAAY,EACZ,UAAU,EACV,WAAW,EACZ,CAAC"}
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package/index.js
CHANGED
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@@ -22,4 +22,4 @@ import { MonomerLib } from './src/monomer-works/monomer-lib';
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import { readLibrary } from './src/monomer-works/monomer-utils';
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import { getNglGlService, NglGlServiceBase } from './src/viewers/ngl-gl-viewer';
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export { NotationConverter, getStats, getAlphabet, getAlphabetSimilarity, getSplitter, splitterAsFasta, splitterAsHelm, getSplitterForColumn, monomerToShort, splitAlignedSequences, SeqPaletteBase, Aminoacids, AminoacidsPalettes, Nucleotides, NucleotidesPalettes, UnknownSeqPalettes, UnknownSeqPalette, pickUpPalette, getPaletteByType, PositionHeight, PositionInfo, PositionMonomerInfo, WebLogoViewer, UnitsHandler, DrawStyle, printLeftOrCentered, FastaFileHandler, VdRegionType, VdRegion, isLeaf, TreeTypesNames, PhylocanvasGlServiceBase, getPhylocanvasGlService, PhylocanvasGL, Shapes, TreeTypes, Utils, Newick, getTreeHelper, getNglGlService, NglGlServiceBase, MonomerWorks, MonomerLib, readLibrary };
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//# sourceMappingURL=data:application/json;base64,
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//# 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xuICBnZXROZ2xHbFNlcnZpY2UsXG4gIE5nbEdsU2VydmljZUJhc2UsXG4gIE5nbEdsVGFza1xufSBmcm9tICcuL3NyYy92aWV3ZXJzL25nbC1nbC12aWV3ZXInO1xuXG5leHBvcnQge1xuICBBTElHTk1FTlQsXG4gIEFMUEhBQkVULFxuICBOT1RBVElPTixcbiAgVEFHUyxcbiAgTm90YXRpb25Db252ZXJ0ZXIsXG4gIFNwbGl0dGVyRnVuYyxcbiAgZ2V0U3RhdHMsXG4gIGdldEFscGhhYmV0LFxuICBnZXRBbHBoYWJldFNpbWlsYXJpdHksXG4gIGdldFNwbGl0dGVyLFxuICBzcGxpdHRlckFzRmFzdGEsXG4gIHNwbGl0dGVyQXNIZWxtLFxuICBnZXRTcGxpdHRlckZvckNvbHVtbixcbiAgbW9ub21lclRvU2hvcnQsXG4gIHNwbGl0QWxpZ25lZFNlcXVlbmNlcyxcbiAgU2VxUGFsZXR0ZSxcbiAgU2VxUGFsZXR0ZUJhc2UsXG4gIEFtaW5vYWNpZHMsXG4gIEFtaW5vYWNpZHNQYWxldHRlcyxcbiAgTnVjbGVvdGlkZXMsXG4gIE51Y2xlb3RpZGVzUGFsZXR0ZXMsXG4gIFVua25vd25TZXFQYWxldHRlcyxcbiAgVW5rbm93blNlcVBhbGV0dGUsXG4gIHBpY2tVcFBhbGV0dGUsXG4gIGdldFBhbGV0dGVCeVR5cGUsXG4gIFBvc2l0aW9uSGVpZ2h0LFxuICBQb3NpdGlvbkluZm8sXG4gIFBvc2l0aW9uTW9ub21lckluZm8sXG4gIFdlYkxvZ29WaWV3ZXIsXG4gIFVuaXRzSGFuZGxlcixcbiAgRHJhd1N0eWxlLFxuICBwcmludExlZnRPckNlbnRlcmVkLFxuICBGYXN0YUZpbGVIYW5kbGVyLFxuICBWZFJlZ2lvblR5cGUsXG4gIFZkUmVnaW9uLFxuICBJVmRSZWdpb25zVmlld2VyLFxuXG4gIE5vZGVUeXBlLCBpc0xlYWYsIE5vZGVDdXR0ZWRUeXBlLFxuICBQaHlsb2NhbnZhc1RyZWVOb2RlLFxuICBOb2RlU3R5bGVUeXBlLCBTdHlsZXNUeXBlLFxuXG4gIElQaHlsb2NhbnZhc0dsVmlld2VyLFxuICBUcmVlVHlwZXNOYW1lcyxcbiAgUGh5bG9jYW52YXNHbFNlcnZpY2VCYXNlLFxuICBDYW52YXNDYWxsYmFjayxcbiAgUGh5bG9jYW52YXNHbFRhc2ssXG4gIGdldFBoeWxvY2FudmFzR2xTZXJ2aWNlLFxuXG4gIFBoeWxvY2FudmFzR0wsXG4gIFNoYXBlcywgVHJlZVR5cGVzLFxuICBVdGlscyxcbiAgTmV3aWNrLFxuICBJVHJlZUhlbHBlcixcbiAgZ2V0VHJlZUhlbHBlcixcblxuICBnZXROZ2xHbFNlcnZpY2UsXG4gIE5nbEdsU2VydmljZUJhc2UsXG4gIE5nbEdsVGFzayxcblxuICAvL01vbm9tZXIgbGliIGFuZCBmZWF0dXJlc1xuICBNb25vbWVyLFxuICBJTW9ub21lckxpYixcbiAgTW9ub21lcldvcmtzLFxuICBNb25vbWVyTGliLFxuICByZWFkTGlicmFyeVxufTtcbiJdfQ==
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package/index.ts
CHANGED
|
@@ -28,7 +28,6 @@ import {
|
|
|
28
28
|
TAGS,
|
|
29
29
|
ALIGNMENT,
|
|
30
30
|
} from './src/utils/macromolecule';
|
|
31
|
-
import {INewickHelper} from './src/utils/newick-helper';
|
|
32
31
|
import {NotationConverter} from './src/utils/notation-converter';
|
|
33
32
|
import {splitAlignedSequences} from './src/utils/splitter';
|
|
34
33
|
import {getTreeHelper, ITreeHelper} from './src/utils/tree-helper';
|
|
@@ -107,7 +106,6 @@ export {
|
|
|
107
106
|
Shapes, TreeTypes,
|
|
108
107
|
Utils,
|
|
109
108
|
Newick,
|
|
110
|
-
INewickHelper,
|
|
111
109
|
ITreeHelper,
|
|
112
110
|
getTreeHelper,
|
|
113
111
|
|
package/package.json
CHANGED
|
@@ -1,6 +1,13 @@
|
|
|
1
1
|
import * as DG from 'datagrok-api/dg';
|
|
2
2
|
import { NodeCuttedType, NodeType } from '../types';
|
|
3
3
|
export interface ITreeHelper {
|
|
4
|
+
/** Generates data frame with row per node, parent relation, distance, annotation
|
|
5
|
+
* @param {string} newick Newick format data
|
|
6
|
+
* @param {string} name Result data frame name
|
|
7
|
+
* @param {string} nodePrefix Prefix for nodes with auto generated name *
|
|
8
|
+
* @param {bool} emptyParentRootSkip Skip row with root node and empty parent (for Network Diagram)
|
|
9
|
+
*/
|
|
10
|
+
newickToDf(newick: string, name: string, nodePrefix?: string, emptyParentRootSkip?: boolean): DG.DataFrame;
|
|
4
11
|
toNewick(node: NodeType | null): string;
|
|
5
12
|
getLeafList(node: NodeType): NodeType[];
|
|
6
13
|
getNodeList(node: NodeType): NodeType[];
|
|
@@ -9,9 +16,18 @@ export interface ITreeHelper {
|
|
|
9
16
|
}): NodeType | null;
|
|
10
17
|
treeCutAsLeaves(node: NodeType, cutHeight: number, currentHeight?: number): NodeType[];
|
|
11
18
|
treeCutAsTree(node: NodeType, cutHeight: number, keepShorts?: boolean, currentHeight?: number): NodeType | null;
|
|
12
|
-
|
|
13
|
-
|
|
14
|
-
|
|
19
|
+
/** Reorder the grid's rows according to the leaves' order in the tree.
|
|
20
|
+
* @param {string|null} leafColName Column name for leaf name in newick, null - use row index
|
|
21
|
+
*/
|
|
22
|
+
setGridOrder(tree: NodeType, grid: DG.Grid, leafColName: string | null): [NodeType, string[]];
|
|
23
|
+
markClusters(tree: NodeCuttedType, dataDf: DG.DataFrame, leafColName: string | null, clusterColName: string, na?: any): void;
|
|
24
|
+
/**
|
|
25
|
+
* @param {string|null} leafColName Column name for leaf name in newick, null - use row index
|
|
26
|
+
*/
|
|
27
|
+
buildClusters(tree: NodeCuttedType, clusterDf: DG.DataFrame, clusterColName: string, leafColName: string | null): void;
|
|
28
|
+
/** Modifies the tree ({@link node}) cutting at {@link cutHeight} creating extra nodes.
|
|
29
|
+
* @param {string|null} leafColName Column name for leaf name in newick, null - use row index
|
|
30
|
+
*/
|
|
15
31
|
cutTreeToGrid(node: NodeType, cutHeight: number, dataDf: DG.DataFrame, leafColName: string, clusterColName: string, na?: any): void;
|
|
16
32
|
}
|
|
17
33
|
export declare function getTreeHelper(): Promise<ITreeHelper>;
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"tree-helper.d.ts","sourceRoot":"","sources":["tree-helper.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAEtC,OAAO,EAAC,cAAc,EAAE,QAAQ,EAAC,MAAM,UAAU,CAAC;AAGlD,MAAM,WAAW,WAAW;IAC1B,QAAQ,CAAC,IAAI,EAAE,QAAQ,GAAG,IAAI,GAAG,MAAM,CAAC;IAExC,WAAW,CAAC,IAAI,EAAE,QAAQ,GAAG,QAAQ,EAAE,CAAC;IAExC,WAAW,CAAC,IAAI,EAAE,QAAQ,GAAG,QAAQ,EAAE,CAAC;IAExC,kBAAkB,CAAC,IAAI,EAAE,QAAQ,EAAE,MAAM,EAAE;QAAE,CAAC,IAAI,EAAE,MAAM,GAAG,GAAG,CAAA;KAAE,GAAG,QAAQ,GAAG,IAAI,CAAC;IAErF,eAAe,CAAC,IAAI,EAAE,QAAQ,EAAE,SAAS,EAAE,MAAM,EAAE,aAAa,CAAC,EAAE,MAAM,GAAG,QAAQ,EAAE,CAAC;IAEvF,aAAa,CAAC,IAAI,EAAE,QAAQ,EAAE,SAAS,EAAE,MAAM,EAAE,UAAU,CAAC,EAAE,OAAO,EAAE,aAAa,CAAC,EAAE,MAAM,GAAG,QAAQ,GAAG,IAAI,CAAC;IAEhH,YAAY,CAAC,IAAI,EAAE,QAAQ,EAAE,IAAI,EAAE,EAAE,CAAC,IAAI,EAAE,WAAW,EAAE,MAAM,GAAG,CAAC,QAAQ,EAAE,MAAM,EAAE,CAAC,CAAC;
|
|
1
|
+
{"version":3,"file":"tree-helper.d.ts","sourceRoot":"","sources":["tree-helper.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAEtC,OAAO,EAAC,cAAc,EAAE,QAAQ,EAAC,MAAM,UAAU,CAAC;AAGlD,MAAM,WAAW,WAAW;IAC1B;;;;;OAKG;IACH,UAAU,CAAC,MAAM,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,EAAE,UAAU,CAAC,EAAE,MAAM,EAAE,mBAAmB,CAAC,EAAE,OAAO,GAAG,EAAE,CAAC,SAAS,CAAC;IAE3G,QAAQ,CAAC,IAAI,EAAE,QAAQ,GAAG,IAAI,GAAG,MAAM,CAAC;IAExC,WAAW,CAAC,IAAI,EAAE,QAAQ,GAAG,QAAQ,EAAE,CAAC;IAExC,WAAW,CAAC,IAAI,EAAE,QAAQ,GAAG,QAAQ,EAAE,CAAC;IAExC,kBAAkB,CAAC,IAAI,EAAE,QAAQ,EAAE,MAAM,EAAE;QAAE,CAAC,IAAI,EAAE,MAAM,GAAG,GAAG,CAAA;KAAE,GAAG,QAAQ,GAAG,IAAI,CAAC;IAErF,eAAe,CAAC,IAAI,EAAE,QAAQ,EAAE,SAAS,EAAE,MAAM,EAAE,aAAa,CAAC,EAAE,MAAM,GAAG,QAAQ,EAAE,CAAC;IAEvF,aAAa,CAAC,IAAI,EAAE,QAAQ,EAAE,SAAS,EAAE,MAAM,EAAE,UAAU,CAAC,EAAE,OAAO,EAAE,aAAa,CAAC,EAAE,MAAM,GAAG,QAAQ,GAAG,IAAI,CAAC;IAEhH;;OAEG;IACH,YAAY,CAAC,IAAI,EAAE,QAAQ,EAAE,IAAI,EAAE,EAAE,CAAC,IAAI,EAAE,WAAW,EAAE,MAAM,GAAG,IAAI,GAAG,CAAC,QAAQ,EAAE,MAAM,EAAE,CAAC,CAAC;IAE9F,YAAY,CAAC,IAAI,EAAE,cAAc,EAC/B,MAAM,EAAE,EAAE,CAAC,SAAS,EAAE,WAAW,EAAE,MAAM,GAAG,IAAI,EAAE,cAAc,EAAE,MAAM,EAAE,EAAE,CAAC,EAAE,GAAG,GAAG,IAAI,CAAC;IAG5F;;OAEG;IACH,aAAa,CAAC,IAAI,EAAE,cAAc,EAChC,SAAS,EAAE,EAAE,CAAC,SAAS,EAAE,cAAc,EAAE,MAAM,EAAE,WAAW,EAAE,MAAM,GAAG,IAAI,GAAG,IAAI,CAAC;IAErF;;OAEG;IACH,aAAa,CAAC,IAAI,EAAE,QAAQ,EAAE,SAAS,EAAE,MAAM,EAAE,MAAM,EAAE,EAAE,CAAC,SAAS,EACnE,WAAW,EAAE,MAAM,EAAE,cAAc,EAAE,MAAM,EAAE,EAAE,CAAC,EAAE,GAAG,GAAG,IAAI,CAAC;CAChE;AAED,wBAAsB,aAAa,IAAI,OAAO,CAAC,WAAW,CAAC,CAO1D"}
|
package/src/utils/tree-helper.js
CHANGED
|
@@ -17,4 +17,4 @@ export function getTreeHelper() {
|
|
|
17
17
|
return res;
|
|
18
18
|
});
|
|
19
19
|
}
|
|
20
|
-
//# sourceMappingURL=data:application/json;base64,
|
|
20
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+
//# sourceMappingURL=data:application/json;base64,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@@ -16,11 +16,11 @@ NglGlServiceBase.noneSource = {
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};
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export function getNglGlService() {
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return __awaiter(this, void 0, void 0, function* () {
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const funcList = DG.Func.find({ package: '
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+
const funcList = DG.Func.find({ package: 'BiostructureViewer', name: 'getNglGlService' });
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if (funcList.length === 0)
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throw new Error('Package "
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throw new Error('Package "BiostructureViewer" must be installed for NglGl services.');
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const svc = (yield funcList[0].prepare().call()).getOutputParamValue();
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return svc;
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});
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}
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//# sourceMappingURL=data:application/json;base64,
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//# sourceMappingURL=data:application/json;base64,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@@ -1 +0,0 @@
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1
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-
{"version":3,"file":"newick-helper.d.ts","sourceRoot":"","sources":["newick-helper.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAEtC,MAAM,WAAW,aAAa;IAC5B,UAAU,CAAC,MAAM,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,GAAG,EAAE,CAAC,SAAS,CAAC;CACxD"}
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@@ -1,2 +0,0 @@
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1
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-
export {};
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2
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-
//# sourceMappingURL=data:application/json;base64,eyJ2ZXJzaW9uIjozLCJmaWxlIjoibmV3aWNrLWhlbHBlci5qcyIsInNvdXJjZVJvb3QiOiIiLCJzb3VyY2VzIjpbIm5ld2ljay1oZWxwZXIudHMiXSwibmFtZXMiOltdLCJtYXBwaW5ncyI6IiIsInNvdXJjZXNDb250ZW50IjpbImltcG9ydCAqIGFzIGdyb2sgZnJvbSAnZGF0YWdyb2stYXBpL2dyb2snO1xuaW1wb3J0ICogYXMgdWkgZnJvbSAnZGF0YWdyb2stYXBpL3VpJztcbmltcG9ydCAqIGFzIERHIGZyb20gJ2RhdGFncm9rLWFwaS9kZyc7XG5cbmV4cG9ydCBpbnRlcmZhY2UgSU5ld2lja0hlbHBlciB7XG4gIG5ld2lja1RvRGYobmV3aWNrOiBzdHJpbmcsIG5hbWU6IHN0cmluZyk6IERHLkRhdGFGcmFtZTtcbn0iXX0=
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