@datagrok-libraries/bio 2.8.6 → 2.8.7

package/package.json

@@ -5,7 +5,7 @@
   },
   "beta": true,
   "friendlyName": "Datagrok bio library",
-  "version": "2.8.6",
+  "version": "2.8.7",
   "description": "",
   "dependencies": {
     "@datagrok-libraries/utils": "^1.0.0",
@@ -29,14 +29,14 @@
     "link-api": "npm link datagrok-api",
     "link-utils": "npm link @datagrok-libraries/utils",
     "link-all": "npm link datagrok-api @datagrok-libraries/utils",
-    "debug-bio": "grok publish --rebuild",
-    "release-bio": "grok publish --rebuild --release",
+    "debug-bio": "grok publish",
+    "release-bio": "grok publish --release",
     "build-bio": "tsc",
     "build": "tsc",
-    "debug-bio-public": "grok publish public --rebuild",
-    "release-bio-public": "grok publish public --rebuild --release",
-    "debug-bio-local": "grok publish local --rebuild",
-    "release-bio-local": "grok publish local --rebuild --release",
+    "debug-bio-public": "grok publish public",
+    "release-bio-public": "grok publish public --release",
+    "debug-bio-local": "grok publish local",
+    "release-bio-local": "grok publish local --release",
     "lint": "eslint \"./src/**/*.ts\"",
     "lint-fix": "eslint \"./src/**/*.ts\" --fix"
   }

package/src/utils/fasta-handler.d.ts

@@ -0,0 +1,29 @@
+import * as DG from 'datagrok-api/dg';
+/** Class for parsing FASTA files */
+export declare class FastaFileHandler {
+    private _fileContent;
+    private _descriptionsArray;
+    private _sequencesArray;
+    private _columnsParsed;
+    get descriptionsArray(): string[];
+    get sequencesArray(): string[];
+    /**
+     * Helper method to parse a macromolecule from a FASTA file (string)
+     *
+     * @param {number} startOfSequence  index of macromolecule substring beginning
+     * @param {number} endOfSequence  index of macromolecule substring end
+  
+     * @return {string} parsed macromolecule
+     */
+    private parseMacromolecule;
+    /** Parse descriptions and sequences from a FASTA string */
+    private parseColumns;
+    /**
+     * File-handler method for import as FASTA
+     *
+     * @return {DG.DataFrame[]} dataframe with parsed FASTA content
+     */
+    importFasta(): DG.DataFrame[];
+    constructor(fileContent: string);
+}
+//# sourceMappingURL=fasta-handler.d.ts.map

package/src/utils/fasta-handler.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"fasta-handler.d.ts","sourceRoot":"","sources":["fasta-handler.ts"],"names":[],"mappings":"AAGA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAItC,oCAAoC;AACpC,qBAAa,gBAAgB;IAC3B,OAAO,CAAC,YAAY,CAAS;IAC7B,OAAO,CAAC,kBAAkB,CAAgB;IAC1C,OAAO,CAAC,eAAe,CAAgB;IACvC,OAAO,CAAC,cAAc,CAAkB;IAExC,IAAW,iBAAiB,IAAI,MAAM,EAAE,CAKvC;IAED,IAAW,cAAc,IAAI,MAAM,EAAE,CAKpC;IAED;;;;;;;OAOG;IACH,OAAO,CAAC,kBAAkB;IAS1B,2DAA2D;IAC3D,OAAO,CAAC,YAAY;IAkBpB;;;;OAIG;IACI,WAAW,IAAI,EAAE,CAAC,SAAS,EAAG;gBAezB,WAAW,EAAE,MAAM;CAGhC"}

package/src/utils/fasta-handler.js

@@ -0,0 +1,70 @@
+import * as DG from 'datagrok-api/dg';
+import { UnitsHandler } from './units-handler';
+/** Class for parsing FASTA files */
+export class FastaFileHandler {
+    constructor(fileContent) {
+        this._descriptionsArray = []; // parsed FASTA descriptions
+        this._sequencesArray = []; // parsed FASTA sequeces
+        this._columnsParsed = false;
+        this._fileContent = fileContent;
+    }
+    get descriptionsArray() {
+        if (this._columnsParsed)
+            return this._descriptionsArray;
+        else
+            throw new Error('Run parseColumns first');
+    }
+    get sequencesArray() {
+        if (this._columnsParsed)
+            return this._sequencesArray;
+        else
+            throw new Error('Run parseColumns first');
+    }
+    /**
+     * Helper method to parse a macromolecule from a FASTA file (string)
+     *
+     * @param {number} startOfSequence  index of macromolecule substring beginning
+     * @param {number} endOfSequence  index of macromolecule substring end
+  
+     * @return {string} parsed macromolecule
+     */
+    parseMacromolecule(startOfSequence, endOfSequence) {
+        const seq = this._fileContent.slice(startOfSequence, endOfSequence);
+        const seqArray = seq.split(/\s/);
+        return seqArray.join('');
+    }
+    /** Parse descriptions and sequences from a FASTA string */
+    parseColumns() {
+        // parse description and content
+        const regex = /^>(.*)$/gm; // match 'description' lines starting with >
+        let startOfSequence = 0;
+        let match; // match.index is the beginning of the matched line
+        while (match = regex.exec(this._fileContent)) {
+            const description = this._fileContent.substring(match.index + 1, regex.lastIndex);
+            this._descriptionsArray.push(description);
+            if (startOfSequence !== 0)
+                this._sequencesArray.push(this.parseMacromolecule(startOfSequence, match.index));
+            startOfSequence = regex.lastIndex + 1;
+        }
+        this._sequencesArray.push(this.parseMacromolecule(startOfSequence, -1));
+        this._columnsParsed = true;
+    }
+    /**
+     * File-handler method for import as FASTA
+     *
+     * @return {DG.DataFrame[]} dataframe with parsed FASTA content
+     */
+    importFasta() {
+        this.parseColumns();
+        const descriptionsArrayCol = DG.Column.fromStrings('description', this.descriptionsArray);
+        const sequenceCol = DG.Column.fromStrings('sequence', this.sequencesArray);
+        sequenceCol.semType = DG.SEMTYPE.MACROMOLECULE;
+        // here should go the code from units handler
+        UnitsHandler.setUnitsToFastaColumn(sequenceCol);
+        return [DG.DataFrame.fromColumns([
+                descriptionsArrayCol,
+                sequenceCol,
+            ])];
+    }
+}
+//# sourceMappingURL=data:application/json;base64,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

package/src/utils/units-handler.d.ts

@@ -16,6 +16,10 @@ export declare class UnitsHandler {
         SEPARATOR: string;
         FASTA: string;
     };
+    static readonly PeptideFastaAlphabet: Set<string>;
+    static readonly DnaFastaAlphabet: Set<string>;
+    static readonly RnaFastaAlphabet: Set<string>;
+    static setUnitsToFastaColumn(col: DG.Column): void;
     protected get units(): string;
     protected get column(): DG.Column;
     get notation(): NOTATION;

package/src/utils/units-handler.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"units-handler.d.ts","sourceRoot":"","sources":["units-handler.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAItC,0EAA0E;AAC1E,0BAAkB,QAAQ;IACxB,KAAK,UAAU;IACf,SAAS,cAAc;IACvB,IAAI,SAAS;CACd;AAED,iEAAiE;AACjE,qBAAa,YAAY;IACvB,SAAS,CAAC,QAAQ,CAAC,OAAO,EAAE,EAAE,CAAC,MAAM,CAAC;IACtC,SAAS,CAAC,MAAM,EAAE,MAAM,CAAC;IACzB,SAAS,CAAC,SAAS,EAAE,QAAQ,CAAC;IAC9B,SAAS,CAAC,iBAAiB,EAAE,MAAM,CAAC;IACpC,SAAS,CAAC,sBAAsB;;;;MAI9B;IAEF,SAAS,KAAK,KAAK,IAAI,MAAM,CAAwB;IAErD,SAAS,KAAK,MAAM,IAAI,EAAE,CAAC,MAAM,CAAyB;IAE1D,IAAW,QAAQ,IAAI,QAAQ,CAA2B;IAE1D,IAAW,gBAAgB,IAAI,MAAM,CAAmC;IAExE,IAAW,SAAS,IAAI,MAAM,CAM7B;IAEM,OAAO,IAAI,OAAO;IAElB,WAAW,IAAI,OAAO;IAEtB,MAAM,IAAI,OAAO;IAEjB,KAAK,IAAI,OAAO;IAEhB,KAAK,IAAI,OAAO;IAEhB,SAAS,IAAI,OAAO;IAE3B,4DAA4D;IAC5D;;OAEG;IACH,SAAS,CAAC,WAAW,IAAI,QAAQ;IAWjC;;;;;;OAMG;IACH,SAAS,CAAC,YAAY,CAAC,cAAc,EAAE,QAAQ,GAAG,EAAE,CAAC,MAAM;IAmB3D;;;;;;OAMG;WACW,YAAY,CAAC,WAAW,EAAE,EAAE,CAAC,MAAM,GAAG,EAAE,CAAC,MAAM;IAM7D;;;;;OAKG;WACW,kBAAkB,CAAC,KAAK,EAAE,MAAM,GAAG,OAAO;IAUxD;;;;;;;;OAQG;WACW,sBAAsB,CAClC,GAAG,EAAE,MAAM,EACX,IAAI,EAAE,MAAM,EACZ,KAAK,EAAE,MAAM,GACZ,EAAE,CAAC,MAAM;gBAYO,GAAG,EAAE,EAAE,CAAC,MAAM;CAYlC"}
+{"version":3,"file":"units-handler.d.ts","sourceRoot":"","sources":["units-handler.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAMtC,0EAA0E;AAC1E,0BAAkB,QAAQ;IACxB,KAAK,UAAU;IACf,SAAS,cAAc;IACvB,IAAI,SAAS;CACd;AAED,iEAAiE;AACjE,qBAAa,YAAY;IACvB,SAAS,CAAC,QAAQ,CAAC,OAAO,EAAE,EAAE,CAAC,MAAM,CAAC;IACtC,SAAS,CAAC,MAAM,EAAE,MAAM,CAAC;IACzB,SAAS,CAAC,SAAS,EAAE,QAAQ,CAAC;IAC9B,SAAS,CAAC,iBAAiB,EAAE,MAAM,CAAC;IACpC,SAAS,CAAC,sBAAsB;;;;MAI9B;IAEF,gBAAuB,oBAAoB,cAGxC;IACH,gBAAuB,gBAAgB,cAAiC;IACxE,gBAAuB,gBAAgB,cAAiC;WAE1D,qBAAqB,CAAC,GAAG,EAAE,EAAE,CAAC,MAAM;IAsBlD,SAAS,KAAK,KAAK,IAAI,MAAM,CAAwB;IAErD,SAAS,KAAK,MAAM,IAAI,EAAE,CAAC,MAAM,CAAyB;IAE1D,IAAW,QAAQ,IAAI,QAAQ,CAA2B;IAE1D,IAAW,gBAAgB,IAAI,MAAM,CAAmC;IAExE,IAAW,SAAS,IAAI,MAAM,CAM7B;IAEM,OAAO,IAAI,OAAO;IAElB,WAAW,IAAI,OAAO;IAEtB,MAAM,IAAI,OAAO;IAEjB,KAAK,IAAI,OAAO;IAEhB,KAAK,IAAI,OAAO;IAEhB,SAAS,IAAI,OAAO;IAE3B,4DAA4D;IAC5D;;OAEG;IACH,SAAS,CAAC,WAAW,IAAI,QAAQ;IAWjC;;;;;;OAMG;IACH,SAAS,CAAC,YAAY,CAAC,cAAc,EAAE,QAAQ,GAAG,EAAE,CAAC,MAAM;IAmB3D;;;;;;OAMG;WACW,YAAY,CAAC,WAAW,EAAE,EAAE,CAAC,MAAM,GAAG,EAAE,CAAC,MAAM;IAM7D;;;;;OAKG;WACW,kBAAkB,CAAC,KAAK,EAAE,MAAM,GAAG,OAAO;IAUxD;;;;;;;;OAQG;WACW,sBAAsB,CAClC,GAAG,EAAE,MAAM,EACX,IAAI,EAAE,MAAM,EACZ,KAAK,EAAE,MAAM,GACZ,EAAE,CAAC,MAAM;gBAYO,GAAG,EAAE,EAAE,CAAC,MAAM;CAYlC"}

package/src/utils/units-handler.js

@@ -1,4 +1,5 @@
 import * as DG from 'datagrok-api/dg';
+import { WebLogo } from '../viewers/web-logo';
 /** Class for handling notation units in Macromolecule columns */
 export class UnitsHandler {
     constructor(col) {
@@ -18,6 +19,23 @@ export class UnitsHandler {
             (this.isHelm()) ? this._defaultGapSymbolsDict.HELM :
                 this._defaultGapSymbolsDict.SEPARATOR;
     }
+    static setUnitsToFastaColumn(col) {
+        if (col.semType !== DG.SEMTYPE.MACROMOLECULE)
+            throw new Error('Fasta column must be MACROMOLECULE');
+        const stats = WebLogo.getStats(col, 5, WebLogo.splitterAsFasta);
+        const seqType = stats.sameLength ? 'SEQ.MSA' : 'SEQ';
+        const alphabetCandidates = [
+            ['PT', UnitsHandler.PeptideFastaAlphabet],
+            ['DNA', UnitsHandler.DnaFastaAlphabet],
+            ['RNA', UnitsHandler.RnaFastaAlphabet],
+        ];
+        // Calculate likelihoods for alphabet_candidates
+        const alphabetCandidatesSim = alphabetCandidates.map((c) => WebLogo.getAlphabetSimilarity(stats.freq, c[1]));
+        const maxCos = Math.max(...alphabetCandidatesSim);
+        const alphabet = maxCos > 0.65 ? alphabetCandidates[alphabetCandidatesSim.indexOf(maxCos)][0] : 'UN';
+        const units = `fasta:${seqType}:${alphabet}`;
+        col.setTag(DG.TAGS.UNITS, units);
+    }
     get units() { return this._units; }
     get column() { return this._column; }
     get notation() { return this._notation; }
@@ -114,4 +132,10 @@ export class UnitsHandler {
         return newColumn;
     }
 }
-//# sourceMappingURL=data:application/json;base64,{"version":3,"file":"units-handler.js","sourceRoot":"","sources":["units-handler.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAWtC,iEAAiE;AACjE,MAAM,OAAO,YAAY;IAsIvB,YAAmB,GAAc;QAjIvB,2BAAsB,GAAG;YACjC,IAAI,EAAE,GAAG;YACT,SAAS,EAAE,EAAE;YACb,KAAK,EAAE,GAAG;SACX,CAAC;QA8HA,IAAI,CAAC,OAAO,GAAG,GAAG,CAAC;QACnB,MAAM,KAAK,GAAG,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;QAC/C,IAAI,KAAK,KAAK,IAAI;YAChB,IAAI,CAAC,MAAM,GAAG,KAAK,CAAC;;YAEpB,MAAM,IAAI,KAAK,CAAC,mCAAmC,CAAC,CAAC;QACvD,IAAI,CAAC,SAAS,GAAG,IAAI,CAAC,WAAW,EAAE,CAAC;QACpC,IAAI,CAAC,iBAAiB,GAAG,CAAC,IAAI,CAAC,OAAO,EAAE,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,sBAAsB,CAAC,KAAK,CAAC,CAAC;YAC7E,CAAC,IAAI,CAAC,MAAM,EAAE,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,sBAAsB,CAAC,IAAI,CAAC,CAAC;gBAClD,IAAI,CAAC,sBAAsB,CAAC,SAAS,CAAC;IAC5C,CAAC;IAtID,IAAc,KAAK,KAAa,OAAO,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC;IAErD,IAAc,MAAM,KAAgB,OAAO,IAAI,CAAC,OAAO,CAAC,CAAC,CAAC;IAE1D,IAAW,QAAQ,KAAe,OAAO,IAAI,CAAC,SAAS,CAAC,CAAC,CAAC;IAE1D,IAAW,gBAAgB,KAAa,OAAO,IAAI,CAAC,iBAAiB,CAAC,CAAC,CAAC;IAExE,IAAW,SAAS;QAClB,MAAM,SAAS,GAAG,IAAI,CAAC,MAAM,CAAC,MAAM,CAAC,WAAW,CAAC,CAAC;QAClD,IAAI,SAAS,KAAK,IAAI;YACpB,OAAO,SAAS,CAAC;;YAEjB,MAAM,IAAI,KAAK,CAAC,mBAAmB,CAAC,CAAC;IACzC,CAAC;IAEM,OAAO,KAAc,OAAO,IAAI,CAAC,QAAQ,iCAAmB,CAAC,CAAC,CAAC;IAE/D,WAAW,KAAc,OAAO,IAAI,CAAC,QAAQ,yCAAuB,CAAC,CAAC,CAAC;IAEvE,MAAM,KAAc,OAAO,IAAI,CAAC,QAAQ,+BAAkB,CAAC,CAAC,CAAC;IAE7D,KAAK,KAAc,OAAO,IAAI,CAAC,KAAK,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;IAErE,KAAK,KAAc,OAAO,IAAI,CAAC,KAAK,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;IAErE,SAAS,KAAc,OAAO,IAAI,CAAC,KAAK,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IAE/E,4DAA4D;IAC5D;;OAEG;IACO,WAAW;QACnB,IAAI,IAAI,CAAC,KAAK,CAAC,WAAW,EAAE,CAAC,UAAU,CAAC,OAAO,CAAC;YAC9C,oCAAsB;aACnB,IAAI,IAAI,CAAC,KAAK,CAAC,WAAW,EAAE,CAAC,UAAU,CAAC,WAAW,CAAC;YACvD,4CAA0B;aACvB,IAAI,IAAI,CAAC,KAAK,CAAC,WAAW,EAAE,CAAC,UAAU,CAAC,MAAM,CAAC;YAClD,kCAAqB;;YAErB,MAAM,IAAI,KAAK,CAAC,6DAA6D,CAAC,CAAC;IACnF,CAAC;IAED;;;;;;OAMG;IACO,YAAY,CAAC,cAAwB;QAC7C,MAAM,GAAG,GAAG,IAAI,CAAC,MAAM,CAAC;QACxB,MAAM,GAAG,GAAG,GAAG,CAAC,MAAM,CAAC;QACvB,MAAM,IAAI,GAAG,cAAc,CAAC,WAAW,EAAE,GAAG,GAAG,GAAG,GAAG,CAAC,IAAI,GAAG,GAAG,CAAC;QACjE,MAAM,UAAU,GAAG,GAAG,CAAC,SAAS,CAAC,OAAO,CAAC,aAAa,CAAC,IAAI,CAAC,CAAC;QAC7D,MAAM,SAAS,GAAG,EAAE,CAAC,MAAM,CAAC,QAAQ,CAAC,QAAQ,EAAE,UAAU,EAAE,IAAI,KAAK,CAAC,GAAG,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC,CAAC;QACpF,SAAS,CAAC,OAAO,GAAG,EAAE,CAAC,OAAO,CAAC,aAAa,CAAC;QAC7C,SAAS,CAAC,MAAM,CACd,EAAE,CAAC,IAAI,CAAC,KAAK,EACb,IAAI,CAAC,KAAK,CAAC,OAAO,CAChB,IAAI,CAAC,QAAQ,CAAC,WAAW,EAAE,CAAC,QAAQ,EAAE,EACtC,cAAc,CAAC,WAAW,EAAE,CAAC,QAAQ,EAAE,CACxC,CACF,CAAC;QACF,SAAS,CAAC,MAAM,CAAC,EAAE,CAAC,IAAI,CAAC,aAAa,EAAE,eAAe,CAAC,CAAC;QAEzD,OAAO,SAAS,CAAC;IACnB,CAAC;IAED;;;;;;OAMG;IACI,MAAM,CAAC,YAAY,CAAC,WAAsB;QAC/C,MAAM,GAAG,GAAiB,IAAI,YAAY,CAAC,WAAW,CAAC,CAAC;QACxD,MAAM,cAAc,GAAG,GAAG,CAAC,QAAQ,CAAC;QACpC,OAAO,GAAG,CAAC,YAAY,CAAC,cAAc,CAAC,CAAC;IAC1C,CAAC;IAED;;;;;OAKG;IACI,MAAM,CAAC,kBAAkB,CAAC,KAAa;QAC5C,KAAK,GAAG,KAAK,CAAC,WAAW,EAAE,CAAC;QAC5B,MAAM,QAAQ,GAAG,gGAAmD,CAAC;QACrE,MAAM,SAAS,GAAG,CAAC,KAAK,EAAE,KAAK,EAAE,IAAI,CAAC,CAAC;QAEvC,MAAM,eAAe,GAAG,QAAQ,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,KAAK,CAAC,UAAU,CAAC,CAAC,CAAC,WAAW,EAAE,CAAC,CAAC,CAAC;QAChF,MAAM,gBAAgB,GAAG,SAAS,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,qBAAqB;QACxF,OAAO,eAAe,IAAI,gBAAgB,CAAC;IAC7C,CAAC;IAED;;;;;;;;OAQG;IACI,MAAM,CAAC,sBAAsB,CAClC,GAAW,EACX,IAAY,EACZ,KAAa;QAEb,4EAA4E;QAC5E,2BAA2B;QAC3B,+CAA+C;QAC/C,IAAI,CAAC,YAAY,CAAC,kBAAkB,CAAC,KAAK,CAAC;YACzC,MAAM,IAAI,KAAK,CAAC,uCAAuC,CAAC,CAAC;QAC3D,MAAM,SAAS,GAAG,EAAE,CAAC,MAAM,CAAC,QAAQ,CAAC,QAAQ,EAAE,IAAI,EAAE,IAAI,KAAK,CAAC,GAAG,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC,CAAC;QAC9E,SAAS,CAAC,OAAO,GAAG,EAAE,CAAC,OAAO,CAAC,aAAa,CAAC;QAC7C,SAAS,CAAC,MAAM,CAAC,EAAE,CAAC,IAAI,CAAC,KAAK,EAAE,KAAK,CAAC,CAAC;QACvC,OAAO,SAAS,CAAC;IACnB,CAAC;CAcF","sourcesContent":["import * as DG from 'datagrok-api/dg';\nimport * as ui from 'datagrok-api/ui';\nimport * as grok from 'datagrok-api/grok';\n\n/** enum type to simplify setting \"user-friendly\" notation if necessary */\nexport const enum NOTATION {\n  FASTA = 'FASTA',\n  SEPARATOR = 'SEPARATOR',\n  HELM = 'HELM'\n}\n\n/** Class for handling notation units in Macromolecule columns */\nexport class UnitsHandler {\n  protected readonly _column: DG.Column; // the column to be converted\n  protected _units: string; // units, of the form fasta:SEQ:NT, etc.\n  protected _notation: NOTATION; // current notation (without :SEQ:NT, etc.)\n  protected _defaultGapSymbol: string;\n  protected _defaultGapSymbolsDict = {\n    HELM: '*',\n    SEPARATOR: '',\n    FASTA: '-',\n  };\n\n  protected get units(): string { return this._units; }\n\n  protected get column(): DG.Column { return this._column; }\n\n  public get notation(): NOTATION { return this._notation; }\n\n  public get defaultGapSymbol(): string { return this._defaultGapSymbol; }\n\n  public get separator(): string {\n    const separator = this.column.getTag('separator');\n    if (separator !== null)\n      return separator;\n    else\n      throw new Error('Separator not set');\n  }\n\n  public isFasta(): boolean { return this.notation === NOTATION.FASTA; }\n\n  public isSeparator(): boolean { return this.notation === NOTATION.SEPARATOR; }\n\n  public isHelm(): boolean { return this.notation === NOTATION.HELM; }\n\n  public isRna(): boolean { return this.units.toLowerCase().endsWith('rna'); }\n\n  public isDna(): boolean { return this.units.toLowerCase().endsWith('dna'); }\n\n  public isPeptide(): boolean { return this.units.toLowerCase().endsWith('pt'); }\n\n  /** Associate notation types with the corresponding units */\n  /**\n   * @return {NOTATION}     Notation associated with the units type\n   */\n  protected getNotation(): NOTATION {\n    if (this.units.toLowerCase().startsWith('fasta'))\n      return NOTATION.FASTA;\n    else if (this.units.toLowerCase().startsWith('separator'))\n      return NOTATION.SEPARATOR;\n    else if (this.units.toLowerCase().startsWith('helm'))\n      return NOTATION.HELM;\n    else\n      throw new Error('The column has units that do not correspond to any notation');\n  }\n\n  /**\n   * Create a new empty column of the specified notation type and the same\n   * length as column\n   *\n   * @param {NOTATION} targetNotation\n   * @return {DG.Column}\n   */\n  protected getNewColumn(targetNotation: NOTATION): DG.Column {\n    const col = this.column;\n    const len = col.length;\n    const name = targetNotation.toLowerCase() + '(' + col.name + ')';\n    const newColName = col.dataFrame.columns.getUnusedName(name);\n    const newColumn = DG.Column.fromList('string', newColName, new Array(len).fill(''));\n    newColumn.semType = DG.SEMTYPE.MACROMOLECULE;\n    newColumn.setTag(\n      DG.TAGS.UNITS,\n      this.units.replace(\n        this.notation.toLowerCase().toString(),\n        targetNotation.toLowerCase().toString()\n      )\n    );\n    newColumn.setTag(DG.TAGS.CELL_RENDERER, 'Macromolecule');\n\n    return newColumn;\n  }\n\n  /**\n   * Create a new empty column using templateCol as a template\n   *\n   * @param {DG.Column} templateCol  the properties and units of this column are used as a\n   * template to build the new one\n   * @return {DG.Column}\n   */\n  public static getNewColumn(templateCol: DG.Column): DG.Column {\n    const col: UnitsHandler = new UnitsHandler(templateCol);\n    const targetNotation = col.notation;\n    return col.getNewColumn(targetNotation);\n  }\n\n  /**\n   * A helper function checking the validity of the 'units' string\n   *\n   * @param {string} units  the string to be validated\n   * @return {boolean}\n   */\n  public static unitsStringIsValid(units: string): boolean {\n    units = units.toLowerCase();\n    const prefixes = [NOTATION.FASTA, NOTATION.SEPARATOR, NOTATION.HELM];\n    const postfixes = ['rna', 'dna', 'pt'];\n\n    const prefixCriterion = prefixes.some((p) => units.startsWith(p.toLowerCase()));\n    const postfixCriterion = postfixes.some((p) => units.endsWith(p)); // already lowercase;\n    return prefixCriterion && postfixCriterion;\n  }\n\n  /**\n   * Construct a new column of semantic type MACROMOLECULE from the list of\n   * specified parameters\n   *\n   * @param {number}    len  the length of the new column\n   * @param {string}    name  the name of the new column\n   * @param {string}    units  the units of the new column\n   * @return {DG.Column}\n   */\n  public static getNewColumnFromParams(\n    len: number,\n    name: string,\n    units: string\n  ): DG.Column {\n    // WARNING: in this implementation is is impossible to verify the uniqueness\n    // of the new column's name\n    // TODO: verify the validity of units parameter\n    if (!UnitsHandler.unitsStringIsValid(units))\n      throw new Error('Invalid format of \\'units\\' parameter');\n    const newColumn = DG.Column.fromList('string', name, new Array(len).fill(''));\n    newColumn.semType = DG.SEMTYPE.MACROMOLECULE;\n    newColumn.setTag(DG.TAGS.UNITS, units);\n    return newColumn;\n  }\n\n  public constructor(col: DG.Column) {\n    this._column = col;\n    const units = this._column.tags[DG.TAGS.UNITS];\n    if (units !== null)\n      this._units = units;\n    else\n      throw new Error('Units are not specified in column');\n    this._notation = this.getNotation();\n    this._defaultGapSymbol = (this.isFasta()) ? this._defaultGapSymbolsDict.FASTA :\n      (this.isHelm()) ? this._defaultGapSymbolsDict.HELM :\n        this._defaultGapSymbolsDict.SEPARATOR;\n  }\n}\n"]}
+UnitsHandler.PeptideFastaAlphabet = new Set([
+    'G', 'L', 'Y', 'S', 'E', 'Q', 'D', 'N', 'F', 'A',
+    'K', 'R', 'H', 'C', 'V', 'P', 'W', 'I', 'M', 'T',
+]);
+UnitsHandler.DnaFastaAlphabet = new Set(['A', 'C', 'G', 'T']);
+UnitsHandler.RnaFastaAlphabet = new Set(['A', 'C', 'G', 'U']);
+//# sourceMappingURL=data:application/json;base64,{"version":3,"file":"units-handler.js","sourceRoot":"","sources":["units-handler.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAItC,OAAO,EAAC,OAAO,EAAc,MAAM,qBAAqB,CAAC;AASzD,iEAAiE;AACjE,MAAM,OAAO,YAAY;IAmKvB,YAAmB,GAAc;QA9JvB,2BAAsB,GAAG;YACjC,IAAI,EAAE,GAAG;YACT,SAAS,EAAE,EAAE;YACb,KAAK,EAAE,GAAG;SACX,CAAC;QA2JA,IAAI,CAAC,OAAO,GAAG,GAAG,CAAC;QACnB,MAAM,KAAK,GAAG,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;QAC/C,IAAI,KAAK,KAAK,IAAI;YAChB,IAAI,CAAC,MAAM,GAAG,KAAK,CAAC;;YAEpB,MAAM,IAAI,KAAK,CAAC,mCAAmC,CAAC,CAAC;QACvD,IAAI,CAAC,SAAS,GAAG,IAAI,CAAC,WAAW,EAAE,CAAC;QACpC,IAAI,CAAC,iBAAiB,GAAG,CAAC,IAAI,CAAC,OAAO,EAAE,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,sBAAsB,CAAC,KAAK,CAAC,CAAC;YAC7E,CAAC,IAAI,CAAC,MAAM,EAAE,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,sBAAsB,CAAC,IAAI,CAAC,CAAC;gBAClD,IAAI,CAAC,sBAAsB,CAAC,SAAS,CAAC;IAC5C,CAAC;IA5JM,MAAM,CAAC,qBAAqB,CAAC,GAAc;QAChD,IAAI,GAAG,CAAC,OAAO,KAAK,EAAE,CAAC,OAAO,CAAC,aAAa;YAC1C,MAAM,IAAI,KAAK,CAAC,oCAAoC,CAAC,CAAC;QAExD,MAAM,KAAK,GAAgB,OAAO,CAAC,QAAQ,CAAC,GAAG,EAAE,CAAC,EAAE,OAAO,CAAC,eAAe,CAAC,CAAC;QAC7E,MAAM,OAAO,GAAG,KAAK,CAAC,UAAU,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,KAAK,CAAC;QAErD,MAAM,kBAAkB,GAA4B;YAClD,CAAC,IAAI,EAAE,YAAY,CAAC,oBAAoB,CAAC;YACzC,CAAC,KAAK,EAAE,YAAY,CAAC,gBAAgB,CAAC;YACtC,CAAC,KAAK,EAAE,YAAY,CAAC,gBAAgB,CAAC;SACvC,CAAC;QAEF,gDAAgD;QAChD,MAAM,qBAAqB,GAAa,kBAAkB,CAAC,GAAG,CAC5D,CAAC,CAAC,EAAE,EAAE,CAAC,OAAO,CAAC,qBAAqB,CAAC,KAAK,CAAC,IAAI,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;QAC1D,MAAM,MAAM,GAAG,IAAI,CAAC,GAAG,CAAC,GAAG,qBAAqB,CAAC,CAAC;QAClD,MAAM,QAAQ,GAAG,MAAM,GAAG,IAAI,CAAC,CAAC,CAAC,kBAAkB,CAAC,qBAAqB,CAAC,OAAO,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC;QACrG,MAAM,KAAK,GAAW,SAAS,OAAO,IAAI,QAAQ,EAAE,CAAC;QACrD,GAAG,CAAC,MAAM,CAAC,EAAE,CAAC,IAAI,CAAC,KAAK,EAAE,KAAK,CAAC,CAAC;IACnC,CAAC;IAED,IAAc,KAAK,KAAa,OAAO,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC;IAErD,IAAc,MAAM,KAAgB,OAAO,IAAI,CAAC,OAAO,CAAC,CAAC,CAAC;IAE1D,IAAW,QAAQ,KAAe,OAAO,IAAI,CAAC,SAAS,CAAC,CAAC,CAAC;IAE1D,IAAW,gBAAgB,KAAa,OAAO,IAAI,CAAC,iBAAiB,CAAC,CAAC,CAAC;IAExE,IAAW,SAAS;QAClB,MAAM,SAAS,GAAG,IAAI,CAAC,MAAM,CAAC,MAAM,CAAC,WAAW,CAAC,CAAC;QAClD,IAAI,SAAS,KAAK,IAAI;YACpB,OAAO,SAAS,CAAC;;YAEjB,MAAM,IAAI,KAAK,CAAC,mBAAmB,CAAC,CAAC;IACzC,CAAC;IAEM,OAAO,KAAc,OAAO,IAAI,CAAC,QAAQ,iCAAmB,CAAC,CAAC,CAAC;IAE/D,WAAW,KAAc,OAAO,IAAI,CAAC,QAAQ,yCAAuB,CAAC,CAAC,CAAC;IAEvE,MAAM,KAAc,OAAO,IAAI,CAAC,QAAQ,+BAAkB,CAAC,CAAC,CAAC;IAE7D,KAAK,KAAc,OAAO,IAAI,CAAC,KAAK,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;IAErE,KAAK,KAAc,OAAO,IAAI,CAAC,KAAK,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;IAErE,SAAS,KAAc,OAAO,IAAI,CAAC,KAAK,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IAE/E,4DAA4D;IAC5D;;OAEG;IACO,WAAW;QACnB,IAAI,IAAI,CAAC,KAAK,CAAC,WAAW,EAAE,CAAC,UAAU,CAAC,OAAO,CAAC;YAC9C,oCAAsB;aACnB,IAAI,IAAI,CAAC,KAAK,CAAC,WAAW,EAAE,CAAC,UAAU,CAAC,WAAW,CAAC;YACvD,4CAA0B;aACvB,IAAI,IAAI,CAAC,KAAK,CAAC,WAAW,EAAE,CAAC,UAAU,CAAC,MAAM,CAAC;YAClD,kCAAqB;;YAErB,MAAM,IAAI,KAAK,CAAC,6DAA6D,CAAC,CAAC;IACnF,CAAC;IAED;;;;;;OAMG;IACO,YAAY,CAAC,cAAwB;QAC7C,MAAM,GAAG,GAAG,IAAI,CAAC,MAAM,CAAC;QACxB,MAAM,GAAG,GAAG,GAAG,CAAC,MAAM,CAAC;QACvB,MAAM,IAAI,GAAG,cAAc,CAAC,WAAW,EAAE,GAAG,GAAG,GAAG,GAAG,CAAC,IAAI,GAAG,GAAG,CAAC;QACjE,MAAM,UAAU,GAAG,GAAG,CAAC,SAAS,CAAC,OAAO,CAAC,aAAa,CAAC,IAAI,CAAC,CAAC;QAC7D,MAAM,SAAS,GAAG,EAAE,CAAC,MAAM,CAAC,QAAQ,CAAC,QAAQ,EAAE,UAAU,EAAE,IAAI,KAAK,CAAC,GAAG,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC,CAAC;QACpF,SAAS,CAAC,OAAO,GAAG,EAAE,CAAC,OAAO,CAAC,aAAa,CAAC;QAC7C,SAAS,CAAC,MAAM,CACd,EAAE,CAAC,IAAI,CAAC,KAAK,EACb,IAAI,CAAC,KAAK,CAAC,OAAO,CAChB,IAAI,CAAC,QAAQ,CAAC,WAAW,EAAE,CAAC,QAAQ,EAAE,EACtC,cAAc,CAAC,WAAW,EAAE,CAAC,QAAQ,EAAE,CACxC,CACF,CAAC;QACF,SAAS,CAAC,MAAM,CAAC,EAAE,CAAC,IAAI,CAAC,aAAa,EAAE,eAAe,CAAC,CAAC;QAEzD,OAAO,SAAS,CAAC;IACnB,CAAC;IAED;;;;;;OAMG;IACI,MAAM,CAAC,YAAY,CAAC,WAAsB;QAC/C,MAAM,GAAG,GAAiB,IAAI,YAAY,CAAC,WAAW,CAAC,CAAC;QACxD,MAAM,cAAc,GAAG,GAAG,CAAC,QAAQ,CAAC;QACpC,OAAO,GAAG,CAAC,YAAY,CAAC,cAAc,CAAC,CAAC;IAC1C,CAAC;IAED;;;;;OAKG;IACI,MAAM,CAAC,kBAAkB,CAAC,KAAa;QAC5C,KAAK,GAAG,KAAK,CAAC,WAAW,EAAE,CAAC;QAC5B,MAAM,QAAQ,GAAG,gGAAmD,CAAC;QACrE,MAAM,SAAS,GAAG,CAAC,KAAK,EAAE,KAAK,EAAE,IAAI,CAAC,CAAC;QAEvC,MAAM,eAAe,GAAG,QAAQ,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,KAAK,CAAC,UAAU,CAAC,CAAC,CAAC,WAAW,EAAE,CAAC,CAAC,CAAC;QAChF,MAAM,gBAAgB,GAAG,SAAS,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,qBAAqB;QACxF,OAAO,eAAe,IAAI,gBAAgB,CAAC;IAC7C,CAAC;IAED;;;;;;;;OAQG;IACI,MAAM,CAAC,sBAAsB,CAClC,GAAW,EACX,IAAY,EACZ,KAAa;QAEb,4EAA4E;QAC5E,2BAA2B;QAC3B,+CAA+C;QAC/C,IAAI,CAAC,YAAY,CAAC,kBAAkB,CAAC,KAAK,CAAC;YACzC,MAAM,IAAI,KAAK,CAAC,uCAAuC,CAAC,CAAC;QAC3D,MAAM,SAAS,GAAG,EAAE,CAAC,MAAM,CAAC,QAAQ,CAAC,QAAQ,EAAE,IAAI,EAAE,IAAI,KAAK,CAAC,GAAG,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC,CAAC;QAC9E,SAAS,CAAC,OAAO,GAAG,EAAE,CAAC,OAAO,CAAC,aAAa,CAAC;QAC7C,SAAS,CAAC,MAAM,CAAC,EAAE,CAAC,IAAI,CAAC,KAAK,EAAE,KAAK,CAAC,CAAC;QACvC,OAAO,SAAS,CAAC;IACnB,CAAC;;AAtJsB,iCAAoB,GAAG,IAAI,GAAG,CAAC;IACpD,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG;IAChD,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG;CACjD,CAAC,CAAC;AACoB,6BAAgB,GAAG,IAAI,GAAG,CAAC,CAAC,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,CAAC,CAAC,CAAC;AACjD,6BAAgB,GAAG,IAAI,GAAG,CAAC,CAAC,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,CAAC,CAAC,CAAC","sourcesContent":["import * as DG from 'datagrok-api/dg';\nimport * as ui from 'datagrok-api/ui';\nimport * as grok from 'datagrok-api/grok';\n\nimport {WebLogo, SeqColStats} from '../viewers/web-logo';\n\n/** enum type to simplify setting \"user-friendly\" notation if necessary */\nexport const enum NOTATION {\n  FASTA = 'FASTA',\n  SEPARATOR = 'SEPARATOR',\n  HELM = 'HELM'\n}\n\n/** Class for handling notation units in Macromolecule columns */\nexport class UnitsHandler {\n  protected readonly _column: DG.Column; // the column to be converted\n  protected _units: string; // units, of the form fasta:SEQ:NT, etc.\n  protected _notation: NOTATION; // current notation (without :SEQ:NT, etc.)\n  protected _defaultGapSymbol: string;\n  protected _defaultGapSymbolsDict = {\n    HELM: '*',\n    SEPARATOR: '',\n    FASTA: '-',\n  };\n\n  public static readonly PeptideFastaAlphabet = new Set([\n    'G', 'L', 'Y', 'S', 'E', 'Q', 'D', 'N', 'F', 'A',\n    'K', 'R', 'H', 'C', 'V', 'P', 'W', 'I', 'M', 'T',\n  ]);\n  public static readonly DnaFastaAlphabet = new Set(['A', 'C', 'G', 'T']);\n  public static readonly RnaFastaAlphabet = new Set(['A', 'C', 'G', 'U']);\n\n  public static setUnitsToFastaColumn(col: DG.Column) {\n    if (col.semType !== DG.SEMTYPE.MACROMOLECULE)\n      throw new Error('Fasta column must be MACROMOLECULE');\n\n    const stats: SeqColStats = WebLogo.getStats(col, 5, WebLogo.splitterAsFasta);\n    const seqType = stats.sameLength ? 'SEQ.MSA' : 'SEQ';\n\n    const alphabetCandidates: [string, Set<string>][] = [\n      ['PT', UnitsHandler.PeptideFastaAlphabet],\n      ['DNA', UnitsHandler.DnaFastaAlphabet],\n      ['RNA', UnitsHandler.RnaFastaAlphabet],\n    ];\n\n    // Calculate likelihoods for alphabet_candidates\n    const alphabetCandidatesSim: number[] = alphabetCandidates.map(\n      (c) => WebLogo.getAlphabetSimilarity(stats.freq, c[1]));\n    const maxCos = Math.max(...alphabetCandidatesSim);\n    const alphabet = maxCos > 0.65 ? alphabetCandidates[alphabetCandidatesSim.indexOf(maxCos)][0] : 'UN';\n    const units: string = `fasta:${seqType}:${alphabet}`;\n    col.setTag(DG.TAGS.UNITS, units);\n  }\n\n  protected get units(): string { return this._units; }\n\n  protected get column(): DG.Column { return this._column; }\n\n  public get notation(): NOTATION { return this._notation; }\n\n  public get defaultGapSymbol(): string { return this._defaultGapSymbol; }\n\n  public get separator(): string {\n    const separator = this.column.getTag('separator');\n    if (separator !== null)\n      return separator;\n    else\n      throw new Error('Separator not set');\n  }\n\n  public isFasta(): boolean { return this.notation === NOTATION.FASTA; }\n\n  public isSeparator(): boolean { return this.notation === NOTATION.SEPARATOR; }\n\n  public isHelm(): boolean { return this.notation === NOTATION.HELM; }\n\n  public isRna(): boolean { return this.units.toLowerCase().endsWith('rna'); }\n\n  public isDna(): boolean { return this.units.toLowerCase().endsWith('dna'); }\n\n  public isPeptide(): boolean { return this.units.toLowerCase().endsWith('pt'); }\n\n  /** Associate notation types with the corresponding units */\n  /**\n   * @return {NOTATION}     Notation associated with the units type\n   */\n  protected getNotation(): NOTATION {\n    if (this.units.toLowerCase().startsWith('fasta'))\n      return NOTATION.FASTA;\n    else if (this.units.toLowerCase().startsWith('separator'))\n      return NOTATION.SEPARATOR;\n    else if (this.units.toLowerCase().startsWith('helm'))\n      return NOTATION.HELM;\n    else\n      throw new Error('The column has units that do not correspond to any notation');\n  }\n\n  /**\n   * Create a new empty column of the specified notation type and the same\n   * length as column\n   *\n   * @param {NOTATION} targetNotation\n   * @return {DG.Column}\n   */\n  protected getNewColumn(targetNotation: NOTATION): DG.Column {\n    const col = this.column;\n    const len = col.length;\n    const name = targetNotation.toLowerCase() + '(' + col.name + ')';\n    const newColName = col.dataFrame.columns.getUnusedName(name);\n    const newColumn = DG.Column.fromList('string', newColName, new Array(len).fill(''));\n    newColumn.semType = DG.SEMTYPE.MACROMOLECULE;\n    newColumn.setTag(\n      DG.TAGS.UNITS,\n      this.units.replace(\n        this.notation.toLowerCase().toString(),\n        targetNotation.toLowerCase().toString()\n      )\n    );\n    newColumn.setTag(DG.TAGS.CELL_RENDERER, 'Macromolecule');\n\n    return newColumn;\n  }\n\n  /**\n   * Create a new empty column using templateCol as a template\n   *\n   * @param {DG.Column} templateCol  the properties and units of this column are used as a\n   * template to build the new one\n   * @return {DG.Column}\n   */\n  public static getNewColumn(templateCol: DG.Column): DG.Column {\n    const col: UnitsHandler = new UnitsHandler(templateCol);\n    const targetNotation = col.notation;\n    return col.getNewColumn(targetNotation);\n  }\n\n  /**\n   * A helper function checking the validity of the 'units' string\n   *\n   * @param {string} units  the string to be validated\n   * @return {boolean}\n   */\n  public static unitsStringIsValid(units: string): boolean {\n    units = units.toLowerCase();\n    const prefixes = [NOTATION.FASTA, NOTATION.SEPARATOR, NOTATION.HELM];\n    const postfixes = ['rna', 'dna', 'pt'];\n\n    const prefixCriterion = prefixes.some((p) => units.startsWith(p.toLowerCase()));\n    const postfixCriterion = postfixes.some((p) => units.endsWith(p)); // already lowercase;\n    return prefixCriterion && postfixCriterion;\n  }\n\n  /**\n   * Construct a new column of semantic type MACROMOLECULE from the list of\n   * specified parameters\n   *\n   * @param {number}    len  the length of the new column\n   * @param {string}    name  the name of the new column\n   * @param {string}    units  the units of the new column\n   * @return {DG.Column}\n   */\n  public static getNewColumnFromParams(\n    len: number,\n    name: string,\n    units: string\n  ): DG.Column {\n    // WARNING: in this implementation is is impossible to verify the uniqueness\n    // of the new column's name\n    // TODO: verify the validity of units parameter\n    if (!UnitsHandler.unitsStringIsValid(units))\n      throw new Error('Invalid format of \\'units\\' parameter');\n    const newColumn = DG.Column.fromList('string', name, new Array(len).fill(''));\n    newColumn.semType = DG.SEMTYPE.MACROMOLECULE;\n    newColumn.setTag(DG.TAGS.UNITS, units);\n    return newColumn;\n  }\n\n  public constructor(col: DG.Column) {\n    this._column = col;\n    const units = this._column.tags[DG.TAGS.UNITS];\n    if (units !== null)\n      this._units = units;\n    else\n      throw new Error('Units are not specified in column');\n    this._notation = this.getNotation();\n    this._defaultGapSymbol = (this.isFasta()) ? this._defaultGapSymbolsDict.FASTA :\n      (this.isHelm()) ? this._defaultGapSymbolsDict.HELM :\n        this._defaultGapSymbolsDict.SEPARATOR;\n  }\n}\n"]}