@datagrok-libraries/bio 2.8.4 → 2.8.7
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/package.json +7 -7
- package/src/utils/fasta-handler.d.ts +29 -0
- package/src/utils/fasta-handler.d.ts.map +1 -0
- package/src/utils/fasta-handler.js +70 -0
- package/src/utils/notation-converter.d.ts +3 -37
- package/src/utils/notation-converter.d.ts.map +1 -1
- package/src/utils/notation-converter.js +21 -79
- package/src/utils/units-handler.d.ts +74 -0
- package/src/utils/units-handler.d.ts.map +1 -0
- package/src/utils/units-handler.js +141 -0
- package/src/viewers/web-logo.d.ts +6 -3
- package/src/viewers/web-logo.d.ts.map +1 -1
- package/src/viewers/web-logo.js +31 -21
|
@@ -0,0 +1,141 @@
|
|
|
1
|
+
import * as DG from 'datagrok-api/dg';
|
|
2
|
+
import { WebLogo } from '../viewers/web-logo';
|
|
3
|
+
/** Class for handling notation units in Macromolecule columns */
|
|
4
|
+
export class UnitsHandler {
|
|
5
|
+
constructor(col) {
|
|
6
|
+
this._defaultGapSymbolsDict = {
|
|
7
|
+
HELM: '*',
|
|
8
|
+
SEPARATOR: '',
|
|
9
|
+
FASTA: '-',
|
|
10
|
+
};
|
|
11
|
+
this._column = col;
|
|
12
|
+
const units = this._column.tags[DG.TAGS.UNITS];
|
|
13
|
+
if (units !== null)
|
|
14
|
+
this._units = units;
|
|
15
|
+
else
|
|
16
|
+
throw new Error('Units are not specified in column');
|
|
17
|
+
this._notation = this.getNotation();
|
|
18
|
+
this._defaultGapSymbol = (this.isFasta()) ? this._defaultGapSymbolsDict.FASTA :
|
|
19
|
+
(this.isHelm()) ? this._defaultGapSymbolsDict.HELM :
|
|
20
|
+
this._defaultGapSymbolsDict.SEPARATOR;
|
|
21
|
+
}
|
|
22
|
+
static setUnitsToFastaColumn(col) {
|
|
23
|
+
if (col.semType !== DG.SEMTYPE.MACROMOLECULE)
|
|
24
|
+
throw new Error('Fasta column must be MACROMOLECULE');
|
|
25
|
+
const stats = WebLogo.getStats(col, 5, WebLogo.splitterAsFasta);
|
|
26
|
+
const seqType = stats.sameLength ? 'SEQ.MSA' : 'SEQ';
|
|
27
|
+
const alphabetCandidates = [
|
|
28
|
+
['PT', UnitsHandler.PeptideFastaAlphabet],
|
|
29
|
+
['DNA', UnitsHandler.DnaFastaAlphabet],
|
|
30
|
+
['RNA', UnitsHandler.RnaFastaAlphabet],
|
|
31
|
+
];
|
|
32
|
+
// Calculate likelihoods for alphabet_candidates
|
|
33
|
+
const alphabetCandidatesSim = alphabetCandidates.map((c) => WebLogo.getAlphabetSimilarity(stats.freq, c[1]));
|
|
34
|
+
const maxCos = Math.max(...alphabetCandidatesSim);
|
|
35
|
+
const alphabet = maxCos > 0.65 ? alphabetCandidates[alphabetCandidatesSim.indexOf(maxCos)][0] : 'UN';
|
|
36
|
+
const units = `fasta:${seqType}:${alphabet}`;
|
|
37
|
+
col.setTag(DG.TAGS.UNITS, units);
|
|
38
|
+
}
|
|
39
|
+
get units() { return this._units; }
|
|
40
|
+
get column() { return this._column; }
|
|
41
|
+
get notation() { return this._notation; }
|
|
42
|
+
get defaultGapSymbol() { return this._defaultGapSymbol; }
|
|
43
|
+
get separator() {
|
|
44
|
+
const separator = this.column.getTag('separator');
|
|
45
|
+
if (separator !== null)
|
|
46
|
+
return separator;
|
|
47
|
+
else
|
|
48
|
+
throw new Error('Separator not set');
|
|
49
|
+
}
|
|
50
|
+
isFasta() { return this.notation === "FASTA" /* NOTATION.FASTA */; }
|
|
51
|
+
isSeparator() { return this.notation === "SEPARATOR" /* NOTATION.SEPARATOR */; }
|
|
52
|
+
isHelm() { return this.notation === "HELM" /* NOTATION.HELM */; }
|
|
53
|
+
isRna() { return this.units.toLowerCase().endsWith('rna'); }
|
|
54
|
+
isDna() { return this.units.toLowerCase().endsWith('dna'); }
|
|
55
|
+
isPeptide() { return this.units.toLowerCase().endsWith('pt'); }
|
|
56
|
+
/** Associate notation types with the corresponding units */
|
|
57
|
+
/**
|
|
58
|
+
* @return {NOTATION} Notation associated with the units type
|
|
59
|
+
*/
|
|
60
|
+
getNotation() {
|
|
61
|
+
if (this.units.toLowerCase().startsWith('fasta'))
|
|
62
|
+
return "FASTA" /* NOTATION.FASTA */;
|
|
63
|
+
else if (this.units.toLowerCase().startsWith('separator'))
|
|
64
|
+
return "SEPARATOR" /* NOTATION.SEPARATOR */;
|
|
65
|
+
else if (this.units.toLowerCase().startsWith('helm'))
|
|
66
|
+
return "HELM" /* NOTATION.HELM */;
|
|
67
|
+
else
|
|
68
|
+
throw new Error('The column has units that do not correspond to any notation');
|
|
69
|
+
}
|
|
70
|
+
/**
|
|
71
|
+
* Create a new empty column of the specified notation type and the same
|
|
72
|
+
* length as column
|
|
73
|
+
*
|
|
74
|
+
* @param {NOTATION} targetNotation
|
|
75
|
+
* @return {DG.Column}
|
|
76
|
+
*/
|
|
77
|
+
getNewColumn(targetNotation) {
|
|
78
|
+
const col = this.column;
|
|
79
|
+
const len = col.length;
|
|
80
|
+
const name = targetNotation.toLowerCase() + '(' + col.name + ')';
|
|
81
|
+
const newColName = col.dataFrame.columns.getUnusedName(name);
|
|
82
|
+
const newColumn = DG.Column.fromList('string', newColName, new Array(len).fill(''));
|
|
83
|
+
newColumn.semType = DG.SEMTYPE.MACROMOLECULE;
|
|
84
|
+
newColumn.setTag(DG.TAGS.UNITS, this.units.replace(this.notation.toLowerCase().toString(), targetNotation.toLowerCase().toString()));
|
|
85
|
+
newColumn.setTag(DG.TAGS.CELL_RENDERER, 'Macromolecule');
|
|
86
|
+
return newColumn;
|
|
87
|
+
}
|
|
88
|
+
/**
|
|
89
|
+
* Create a new empty column using templateCol as a template
|
|
90
|
+
*
|
|
91
|
+
* @param {DG.Column} templateCol the properties and units of this column are used as a
|
|
92
|
+
* template to build the new one
|
|
93
|
+
* @return {DG.Column}
|
|
94
|
+
*/
|
|
95
|
+
static getNewColumn(templateCol) {
|
|
96
|
+
const col = new UnitsHandler(templateCol);
|
|
97
|
+
const targetNotation = col.notation;
|
|
98
|
+
return col.getNewColumn(targetNotation);
|
|
99
|
+
}
|
|
100
|
+
/**
|
|
101
|
+
* A helper function checking the validity of the 'units' string
|
|
102
|
+
*
|
|
103
|
+
* @param {string} units the string to be validated
|
|
104
|
+
* @return {boolean}
|
|
105
|
+
*/
|
|
106
|
+
static unitsStringIsValid(units) {
|
|
107
|
+
units = units.toLowerCase();
|
|
108
|
+
const prefixes = ["FASTA" /* NOTATION.FASTA */, "SEPARATOR" /* NOTATION.SEPARATOR */, "HELM" /* NOTATION.HELM */];
|
|
109
|
+
const postfixes = ['rna', 'dna', 'pt'];
|
|
110
|
+
const prefixCriterion = prefixes.some((p) => units.startsWith(p.toLowerCase()));
|
|
111
|
+
const postfixCriterion = postfixes.some((p) => units.endsWith(p)); // already lowercase;
|
|
112
|
+
return prefixCriterion && postfixCriterion;
|
|
113
|
+
}
|
|
114
|
+
/**
|
|
115
|
+
* Construct a new column of semantic type MACROMOLECULE from the list of
|
|
116
|
+
* specified parameters
|
|
117
|
+
*
|
|
118
|
+
* @param {number} len the length of the new column
|
|
119
|
+
* @param {string} name the name of the new column
|
|
120
|
+
* @param {string} units the units of the new column
|
|
121
|
+
* @return {DG.Column}
|
|
122
|
+
*/
|
|
123
|
+
static getNewColumnFromParams(len, name, units) {
|
|
124
|
+
// WARNING: in this implementation is is impossible to verify the uniqueness
|
|
125
|
+
// of the new column's name
|
|
126
|
+
// TODO: verify the validity of units parameter
|
|
127
|
+
if (!UnitsHandler.unitsStringIsValid(units))
|
|
128
|
+
throw new Error('Invalid format of \'units\' parameter');
|
|
129
|
+
const newColumn = DG.Column.fromList('string', name, new Array(len).fill(''));
|
|
130
|
+
newColumn.semType = DG.SEMTYPE.MACROMOLECULE;
|
|
131
|
+
newColumn.setTag(DG.TAGS.UNITS, units);
|
|
132
|
+
return newColumn;
|
|
133
|
+
}
|
|
134
|
+
}
|
|
135
|
+
UnitsHandler.PeptideFastaAlphabet = new Set([
|
|
136
|
+
'G', 'L', 'Y', 'S', 'E', 'Q', 'D', 'N', 'F', 'A',
|
|
137
|
+
'K', 'R', 'H', 'C', 'V', 'P', 'W', 'I', 'M', 'T',
|
|
138
|
+
]);
|
|
139
|
+
UnitsHandler.DnaFastaAlphabet = new Set(['A', 'C', 'G', 'T']);
|
|
140
|
+
UnitsHandler.RnaFastaAlphabet = new Set(['A', 'C', 'G', 'U']);
|
|
141
|
+
//# sourceMappingURL=data:application/json;base64,{"version":3,"file":"units-handler.js","sourceRoot":"","sources":["units-handler.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAItC,OAAO,EAAC,OAAO,EAAc,MAAM,qBAAqB,CAAC;AASzD,iEAAiE;AACjE,MAAM,OAAO,YAAY;IAmKvB,YAAmB,GAAc;QA9JvB,2BAAsB,GAAG;YACjC,IAAI,EAAE,GAAG;YACT,SAAS,EAAE,EAAE;YACb,KAAK,EAAE,GAAG;SACX,CAAC;QA2JA,IAAI,CAAC,OAAO,GAAG,GAAG,CAAC;QACnB,MAAM,KAAK,GAAG,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;QAC/C,IAAI,KAAK,KAAK,IAAI;YAChB,IAAI,CAAC,MAAM,GAAG,KAAK,CAAC;;YAEpB,MAAM,IAAI,KAAK,CAAC,mCAAmC,CAAC,CAAC;QACvD,IAAI,CAAC,SAAS,GAAG,IAAI,CAAC,WAAW,EAAE,CAAC;QACpC,IAAI,CAAC,iBAAiB,GAAG,CAAC,IAAI,CAAC,OAAO,EAAE,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,sBAAsB,CAAC,KAAK,CAAC,CAAC;YAC7E,CAAC,IAAI,CAAC,MAAM,EAAE,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,sBAAsB,CAAC,IAAI,CAAC,CAAC;gBAClD,IAAI,CAAC,sBAAsB,CAAC,SAAS,CAAC;IAC5C,CAAC;IA5JM,MAAM,CAAC,qBAAqB,CAAC,GAAc;QAChD,IAAI,GAAG,CAAC,OAAO,KAAK,EAAE,CAAC,OAAO,CAAC,aAAa;YAC1C,MAAM,IAAI,KAAK,CAAC,oCAAoC,CAAC,CAAC;QAExD,MAAM,KAAK,GAAgB,OAAO,CAAC,QAAQ,CAAC,GAAG,EAAE,CAAC,EAAE,OAAO,CAAC,eAAe,CAAC,CAAC;QAC7E,MAAM,OAAO,GAAG,KAAK,CAAC,UAAU,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,KAAK,CAAC;QAErD,MAAM,kBAAkB,GAA4B;YAClD,CAAC,IAAI,EAAE,YAAY,CAAC,oBAAoB,CAAC;YACzC,CAAC,KAAK,EAAE,YAAY,CAAC,gBAAgB,CAAC;YACtC,CAAC,KAAK,EAAE,YAAY,CAAC,gBAAgB,CAAC;SACvC,CAAC;QAEF,gDAAgD;QAChD,MAAM,qBAAqB,GAAa,kBAAkB,CAAC,GAAG,CAC5D,CAAC,CAAC,EAAE,EAAE,CAAC,OAAO,CAAC,qBAAqB,CAAC,KAAK,CAAC,IAAI,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;QAC1D,MAAM,MAAM,GAAG,IAAI,CAAC,GAAG,CAAC,GAAG,qBAAqB,CAAC,CAAC;QAClD,MAAM,QAAQ,GAAG,MAAM,GAAG,IAAI,CAAC,CAAC,CAAC,kBAAkB,CAAC,qBAAqB,CAAC,OAAO,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC;QACrG,MAAM,KAAK,GAAW,SAAS,OAAO,IAAI,QAAQ,EAAE,CAAC;QACrD,GAAG,CAAC,MAAM,CAAC,EAAE,CAAC,IAAI,CAAC,KAAK,EAAE,KAAK,CAAC,CAAC;IACnC,CAAC;IAED,IAAc,KAAK,KAAa,OAAO,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC;IAErD,IAAc,MAAM,KAAgB,OAAO,IAAI,CAAC,OAAO,CAAC,CAAC,CAAC;IAE1D,IAAW,QAAQ,KAAe,OAAO,IAAI,CAAC,SAAS,CAAC,CAAC,CAAC;IAE1D,IAAW,gBAAgB,KAAa,OAAO,IAAI,CAAC,iBAAiB,CAAC,CAAC,CAAC;IAExE,IAAW,SAAS;QAClB,MAAM,SAAS,GAAG,IAAI,CAAC,MAAM,CAAC,MAAM,CAAC,WAAW,CAAC,CAAC;QAClD,IAAI,SAAS,KAAK,IAAI;YACpB,OAAO,SAAS,CAAC;;YAEjB,MAAM,IAAI,KAAK,CAAC,mBAAmB,CAAC,CAAC;IACzC,CAAC;IAEM,OAAO,KAAc,OAAO,IAAI,CAAC,QAAQ,iCAAmB,CAAC,CAAC,CAAC;IAE/D,WAAW,KAAc,OAAO,IAAI,CAAC,QAAQ,yCAAuB,CAAC,CAAC,CAAC;IAEvE,MAAM,KAAc,OAAO,IAAI,CAAC,QAAQ,+BAAkB,CAAC,CAAC,CAAC;IAE7D,KAAK,KAAc,OAAO,IAAI,CAAC,KAAK,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;IAErE,KAAK,KAAc,OAAO,IAAI,CAAC,KAAK,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;IAErE,SAAS,KAAc,OAAO,IAAI,CAAC,KAAK,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IAE/E,4DAA4D;IAC5D;;OAEG;IACO,WAAW;QACnB,IAAI,IAAI,CAAC,KAAK,CAAC,WAAW,EAAE,CAAC,UAAU,CAAC,OAAO,CAAC;YAC9C,oCAAsB;aACnB,IAAI,IAAI,CAAC,KAAK,CAAC,WAAW,EAAE,CAAC,UAAU,CAAC,WAAW,CAAC;YACvD,4CAA0B;aACvB,IAAI,IAAI,CAAC,KAAK,CAAC,WAAW,EAAE,CAAC,UAAU,CAAC,MAAM,CAAC;YAClD,kCAAqB;;YAErB,MAAM,IAAI,KAAK,CAAC,6DAA6D,CAAC,CAAC;IACnF,CAAC;IAED;;;;;;OAMG;IACO,YAAY,CAAC,cAAwB;QAC7C,MAAM,GAAG,GAAG,IAAI,CAAC,MAAM,CAAC;QACxB,MAAM,GAAG,GAAG,GAAG,CAAC,MAAM,CAAC;QACvB,MAAM,IAAI,GAAG,cAAc,CAAC,WAAW,EAAE,GAAG,GAAG,GAAG,GAAG,CAAC,IAAI,GAAG,GAAG,CAAC;QACjE,MAAM,UAAU,GAAG,GAAG,CAAC,SAAS,CAAC,OAAO,CAAC,aAAa,CAAC,IAAI,CAAC,CAAC;QAC7D,MAAM,SAAS,GAAG,EAAE,CAAC,MAAM,CAAC,QAAQ,CAAC,QAAQ,EAAE,UAAU,EAAE,IAAI,KAAK,CAAC,GAAG,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC,CAAC;QACpF,SAAS,CAAC,OAAO,GAAG,EAAE,CAAC,OAAO,CAAC,aAAa,CAAC;QAC7C,SAAS,CAAC,MAAM,CACd,EAAE,CAAC,IAAI,CAAC,KAAK,EACb,IAAI,CAAC,KAAK,CAAC,OAAO,CAChB,IAAI,CAAC,QAAQ,CAAC,WAAW,EAAE,CAAC,QAAQ,EAAE,EACtC,cAAc,CAAC,WAAW,EAAE,CAAC,QAAQ,EAAE,CACxC,CACF,CAAC;QACF,SAAS,CAAC,MAAM,CAAC,EAAE,CAAC,IAAI,CAAC,aAAa,EAAE,eAAe,CAAC,CAAC;QAEzD,OAAO,SAAS,CAAC;IACnB,CAAC;IAED;;;;;;OAMG;IACI,MAAM,CAAC,YAAY,CAAC,WAAsB;QAC/C,MAAM,GAAG,GAAiB,IAAI,YAAY,CAAC,WAAW,CAAC,CAAC;QACxD,MAAM,cAAc,GAAG,GAAG,CAAC,QAAQ,CAAC;QACpC,OAAO,GAAG,CAAC,YAAY,CAAC,cAAc,CAAC,CAAC;IAC1C,CAAC;IAED;;;;;OAKG;IACI,MAAM,CAAC,kBAAkB,CAAC,KAAa;QAC5C,KAAK,GAAG,KAAK,CAAC,WAAW,EAAE,CAAC;QAC5B,MAAM,QAAQ,GAAG,gGAAmD,CAAC;QACrE,MAAM,SAAS,GAAG,CAAC,KAAK,EAAE,KAAK,EAAE,IAAI,CAAC,CAAC;QAEvC,MAAM,eAAe,GAAG,QAAQ,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,KAAK,CAAC,UAAU,CAAC,CAAC,CAAC,WAAW,EAAE,CAAC,CAAC,CAAC;QAChF,MAAM,gBAAgB,GAAG,SAAS,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,qBAAqB;QACxF,OAAO,eAAe,IAAI,gBAAgB,CAAC;IAC7C,CAAC;IAED;;;;;;;;OAQG;IACI,MAAM,CAAC,sBAAsB,CAClC,GAAW,EACX,IAAY,EACZ,KAAa;QAEb,4EAA4E;QAC5E,2BAA2B;QAC3B,+CAA+C;QAC/C,IAAI,CAAC,YAAY,CAAC,kBAAkB,CAAC,KAAK,CAAC;YACzC,MAAM,IAAI,KAAK,CAAC,uCAAuC,CAAC,CAAC;QAC3D,MAAM,SAAS,GAAG,EAAE,CAAC,MAAM,CAAC,QAAQ,CAAC,QAAQ,EAAE,IAAI,EAAE,IAAI,KAAK,CAAC,GAAG,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC,CAAC;QAC9E,SAAS,CAAC,OAAO,GAAG,EAAE,CAAC,OAAO,CAAC,aAAa,CAAC;QAC7C,SAAS,CAAC,MAAM,CAAC,EAAE,CAAC,IAAI,CAAC,KAAK,EAAE,KAAK,CAAC,CAAC;QACvC,OAAO,SAAS,CAAC;IACnB,CAAC;;AAtJsB,iCAAoB,GAAG,IAAI,GAAG,CAAC;IACpD,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG;IAChD,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG;CACjD,CAAC,CAAC;AACoB,6BAAgB,GAAG,IAAI,GAAG,CAAC,CAAC,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,CAAC,CAAC,CAAC;AACjD,6BAAgB,GAAG,IAAI,GAAG,CAAC,CAAC,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,CAAC,CAAC,CAAC","sourcesContent":["import * as DG from 'datagrok-api/dg';\nimport * as ui from 'datagrok-api/ui';\nimport * as grok from 'datagrok-api/grok';\n\nimport {WebLogo, SeqColStats} from '../viewers/web-logo';\n\n/** enum type to simplify setting \"user-friendly\" notation if necessary */\nexport const enum NOTATION {\n  FASTA = 'FASTA',\n  SEPARATOR = 'SEPARATOR',\n  HELM = 'HELM'\n}\n\n/** Class for handling notation units in Macromolecule columns */\nexport class UnitsHandler {\n  protected readonly _column: DG.Column; // the column to be converted\n  protected _units: string; // units, of the form fasta:SEQ:NT, etc.\n  protected _notation: NOTATION; // current notation (without :SEQ:NT, etc.)\n  protected _defaultGapSymbol: string;\n  protected _defaultGapSymbolsDict = {\n    HELM: '*',\n    SEPARATOR: '',\n    FASTA: '-',\n  };\n\n  public static readonly PeptideFastaAlphabet = new Set([\n    'G', 'L', 'Y', 'S', 'E', 'Q', 'D', 'N', 'F', 'A',\n    'K', 'R', 'H', 'C', 'V', 'P', 'W', 'I', 'M', 'T',\n  ]);\n  public static readonly DnaFastaAlphabet = new Set(['A', 'C', 'G', 'T']);\n  public static readonly RnaFastaAlphabet = new Set(['A', 'C', 'G', 'U']);\n\n  public static setUnitsToFastaColumn(col: DG.Column) {\n    if (col.semType !== DG.SEMTYPE.MACROMOLECULE)\n      throw new Error('Fasta column must be MACROMOLECULE');\n\n    const stats: SeqColStats = WebLogo.getStats(col, 5, WebLogo.splitterAsFasta);\n    const seqType = stats.sameLength ? 'SEQ.MSA' : 'SEQ';\n\n    const alphabetCandidates: [string, Set<string>][] = [\n      ['PT', UnitsHandler.PeptideFastaAlphabet],\n      ['DNA', UnitsHandler.DnaFastaAlphabet],\n      ['RNA', UnitsHandler.RnaFastaAlphabet],\n    ];\n\n    // Calculate likelihoods for alphabet_candidates\n    const alphabetCandidatesSim: number[] = alphabetCandidates.map(\n      (c) => WebLogo.getAlphabetSimilarity(stats.freq, c[1]));\n    const maxCos = Math.max(...alphabetCandidatesSim);\n    const alphabet = maxCos > 0.65 ? alphabetCandidates[alphabetCandidatesSim.indexOf(maxCos)][0] : 'UN';\n    const units: string = `fasta:${seqType}:${alphabet}`;\n    col.setTag(DG.TAGS.UNITS, units);\n  }\n\n  protected get units(): string { return this._units; }\n\n  protected get column(): DG.Column { return this._column; }\n\n  public get notation(): NOTATION { return this._notation; }\n\n  public get defaultGapSymbol(): string { return this._defaultGapSymbol; }\n\n  public get separator(): string {\n    const separator = this.column.getTag('separator');\n    if (separator !== null)\n      return separator;\n    else\n      throw new Error('Separator not set');\n  }\n\n  public isFasta(): boolean { return this.notation === NOTATION.FASTA; }\n\n  public isSeparator(): boolean { return this.notation === NOTATION.SEPARATOR; }\n\n  public isHelm(): boolean { return this.notation === NOTATION.HELM; }\n\n  public isRna(): boolean { return this.units.toLowerCase().endsWith('rna'); }\n\n  public isDna(): boolean { return this.units.toLowerCase().endsWith('dna'); }\n\n  public isPeptide(): boolean { return this.units.toLowerCase().endsWith('pt'); }\n\n  /** Associate notation types with the corresponding units */\n  /**\n   * @return {NOTATION}     Notation associated with the units type\n   */\n  protected getNotation(): NOTATION {\n    if (this.units.toLowerCase().startsWith('fasta'))\n      return NOTATION.FASTA;\n    else if (this.units.toLowerCase().startsWith('separator'))\n      return NOTATION.SEPARATOR;\n    else if (this.units.toLowerCase().startsWith('helm'))\n      return NOTATION.HELM;\n    else\n      throw new Error('The column has units that do not correspond to any notation');\n  }\n\n  /**\n   * Create a new empty column of the specified notation type and the same\n   * length as column\n   *\n   * @param {NOTATION} targetNotation\n   * @return {DG.Column}\n   */\n  protected getNewColumn(targetNotation: NOTATION): DG.Column {\n    const col = this.column;\n    const len = col.length;\n    const name = targetNotation.toLowerCase() + '(' + col.name + ')';\n    const newColName = col.dataFrame.columns.getUnusedName(name);\n    const newColumn = DG.Column.fromList('string', newColName, new Array(len).fill(''));\n    newColumn.semType = DG.SEMTYPE.MACROMOLECULE;\n    newColumn.setTag(\n      DG.TAGS.UNITS,\n      this.units.replace(\n        this.notation.toLowerCase().toString(),\n        targetNotation.toLowerCase().toString()\n      )\n    );\n    newColumn.setTag(DG.TAGS.CELL_RENDERER, 'Macromolecule');\n\n    return newColumn;\n  }\n\n  /**\n   * Create a new empty column using templateCol as a template\n   *\n   * @param {DG.Column} templateCol  the properties and units of this column are used as a\n   * template to build the new one\n   * @return {DG.Column}\n   */\n  public static getNewColumn(templateCol: DG.Column): DG.Column {\n    const col: UnitsHandler = new UnitsHandler(templateCol);\n    const targetNotation = col.notation;\n    return col.getNewColumn(targetNotation);\n  }\n\n  /**\n   * A helper function checking the validity of the 'units' string\n   *\n   * @param {string} units  the string to be validated\n   * @return {boolean}\n   */\n  public static unitsStringIsValid(units: string): boolean {\n    units = units.toLowerCase();\n    const prefixes = [NOTATION.FASTA, NOTATION.SEPARATOR, NOTATION.HELM];\n    const postfixes = ['rna', 'dna', 'pt'];\n\n    const prefixCriterion = prefixes.some((p) => units.startsWith(p.toLowerCase()));\n    const postfixCriterion = postfixes.some((p) => units.endsWith(p)); // already lowercase;\n    return prefixCriterion && postfixCriterion;\n  }\n\n  /**\n   * Construct a new column of semantic type MACROMOLECULE from the list of\n   * specified parameters\n   *\n   * @param {number}    len  the length of the new column\n   * @param {string}    name  the name of the new column\n   * @param {string}    units  the units of the new column\n   * @return {DG.Column}\n   */\n  public static getNewColumnFromParams(\n    len: number,\n    name: string,\n    units: string\n  ): DG.Column {\n    // WARNING: in this implementation is is impossible to verify the uniqueness\n    // of the new column's name\n    // TODO: verify the validity of units parameter\n    if (!UnitsHandler.unitsStringIsValid(units))\n      throw new Error('Invalid format of \\'units\\' parameter');\n    const newColumn = DG.Column.fromList('string', name, new Array(len).fill(''));\n    newColumn.semType = DG.SEMTYPE.MACROMOLECULE;\n    newColumn.setTag(DG.TAGS.UNITS, units);\n    return newColumn;\n  }\n\n  public constructor(col: DG.Column) {\n    this._column = col;\n    const units = this._column.tags[DG.TAGS.UNITS];\n    if (units !== null)\n      this._units = units;\n    else\n      throw new Error('Units are not specified in column');\n    this._notation = this.getNotation();\n    this._defaultGapSymbol = (this.isFasta()) ? this._defaultGapSymbolsDict.FASTA :\n      (this.isHelm()) ? this._defaultGapSymbolsDict.HELM :\n        this._defaultGapSymbolsDict.SEPARATOR;\n  }\n}\n"]}
|
|
@@ -7,7 +7,7 @@ declare module 'datagrok-api/src/grid' {
|
|
|
7
7
|
}
|
|
8
8
|
declare global {
|
|
9
9
|
interface HTMLCanvasElement {
|
|
10
|
-
getCursorPosition(event: MouseEvent): DG.Point;
|
|
10
|
+
getCursorPosition(event: MouseEvent, r: number): DG.Point;
|
|
11
11
|
}
|
|
12
12
|
}
|
|
13
13
|
export declare type MonomerFreqs = {
|
|
@@ -86,7 +86,7 @@ export declare class WebLogo extends DG.JsViewer {
|
|
|
86
86
|
onTableAttached(): Promise<void>;
|
|
87
87
|
detach(): Promise<void>;
|
|
88
88
|
protected _nullSequence(fillerResidue?: string): string;
|
|
89
|
-
protected _calculate(): void;
|
|
89
|
+
protected _calculate(r: number): void;
|
|
90
90
|
render(recalc?: boolean): void;
|
|
91
91
|
private calcSize;
|
|
92
92
|
/**
|
|
@@ -111,8 +111,11 @@ export declare class WebLogo extends DG.JsViewer {
|
|
|
111
111
|
*/
|
|
112
112
|
static splitterAsFasta(seq: any): string[];
|
|
113
113
|
private static helmRe;
|
|
114
|
-
private static helmWrappersRe;
|
|
115
114
|
private static helmPp1Re;
|
|
115
|
+
/** Splits Helm string to monomers, but does not replace monomer names to other notation (e.g. for RNA).
|
|
116
|
+
* @param {string} seq Source string of HELM notation
|
|
117
|
+
* @return {string[]}
|
|
118
|
+
*/
|
|
116
119
|
static splitterAsHelm(seq: any): string[];
|
|
117
120
|
/** Gets method to split sequence by separator
|
|
118
121
|
* @param {string} separator
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"web-logo.d.ts","sourceRoot":"","sources":["web-logo.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAUtC,OAAO,EAAC,UAAU,EAAC,MAAM,iBAAiB,CAAC;AAG3C,OAAO,QAAQ,uBAAuB,CAAC;IACrC,UAAU,IAAI;QACZ,QAAQ,CAAC,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC;KACzC;CACF;AAED,OAAO,CAAC,MAAM,CAAC;IACb,UAAU,iBAAiB;QACzB,iBAAiB,CAAC,KAAK,EAAE,UAAU,GAAG,EAAE,CAAC,KAAK,CAAC;
|
|
1
|
+
{"version":3,"file":"web-logo.d.ts","sourceRoot":"","sources":["web-logo.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAUtC,OAAO,EAAC,UAAU,EAAC,MAAM,iBAAiB,CAAC;AAG3C,OAAO,QAAQ,uBAAuB,CAAC;IACrC,UAAU,IAAI;QACZ,QAAQ,CAAC,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC;KACzC;CACF;AAED,OAAO,CAAC,MAAM,CAAC;IACb,UAAU,iBAAiB;QACzB,iBAAiB,CAAC,KAAK,EAAE,UAAU,EAAE,CAAC,EAAE,MAAM,GAAG,EAAE,CAAC,KAAK,CAAC;KAC3D;CACF;AAED,oBAAY,YAAY,GAAG;IAAE,CAAC,CAAC,EAAE,MAAM,GAAG,MAAM,CAAA;CAAE,CAAC;AACnD,oBAAY,WAAW,GAAG;IAAE,IAAI,EAAE,YAAY,CAAC;IAAC,UAAU,EAAE,OAAO,CAAA;CAAE,CAAA;AACrE,oBAAY,YAAY,GAAG,CAAC,GAAG,EAAE,MAAM,KAAK,MAAM,EAAE,CAAC;AAerD,qBAAa,mBAAmB;IAC9B;OACG;IACH,KAAK,EAAE,MAAM,CAAC;IAEd;OACG;IACH,MAAM,EAAE,EAAE,CAAC,IAAI,CAAC;;CAMjB;AAED,qBAAa,YAAY;IACvB,SAAgB,IAAI,EAAE,MAAM,CAAC;IAC7B,IAAI,EAAE;QAAE,CAAC,CAAC,EAAE,MAAM,GAAG,mBAAmB,CAAA;KAAE,CAAC;IAC3C,QAAQ,EAAE,MAAM,CAAC;IAEjB;;OAEG;gBACS,IAAI,EAAE,MAAM;CAKzB;AAED,qBAAa,OAAQ,SAAQ,EAAE,CAAC,QAAQ;IACtC,OAAc,WAAW,SAAiB;IAC1C,OAAO,CAAC,MAAM,CAAC,WAAW,CAAc;IAExC,OAAO,CAAC,QAAQ,CAAc;IAC9B,OAAO,CAAC,WAAW,CAAkB;IAGrC,SAAS,CAAC,EAAE,EAAE,UAAU,GAAG,IAAI,CAAQ;IAEvC,OAAO,CAAC,IAAI,CAAC,CAAiB;IAC9B,OAAO,CAAC,OAAO,CAAC,CAAc;IAC9B,OAAO,CAAC,MAAM,CAAC,CAAoB;IACnC,OAAO,CAAC,MAAM,CAAC,CAAiB;IAChC,OAAO,CAAC,YAAY,CAAqB;IAEzC,OAAO,CAAC,UAAU,CAAc;IAEhC,OAAO,CAAC,MAAM,CAAkC;IAChD,OAAO,CAAC,QAAQ,CAA6B;IAE7C,OAAO,CAAC,SAAS,CAAsB;IAEvC,OAAO,CAAC,UAAU,CAAa;IAC/B,OAAO,CAAC,QAAQ,CAAa;IAG7B,OAAO,CAAC,cAAc,CAAS;IACxB,aAAa,EAAE,MAAM,CAAC;IACtB,SAAS,EAAE,MAAM,CAAC;IAClB,SAAS,EAAE,MAAM,CAAC;IAClB,qBAAqB,EAAE,OAAO,CAAC;IAC/B,kBAAkB,EAAE,MAAM,GAAG,IAAI,CAAC;IAClC,iBAAiB,EAAE,MAAM,GAAG,IAAI,CAAC;IACjC,eAAe,EAAE,MAAM,GAAG,IAAI,CAAC;IAC/B,QAAQ,EAAE,OAAO,CAAC;IAClB,iBAAiB,EAAE,MAAM,GAAG,IAAI,CAAC;IACjC,mBAAmB,EAAE,MAAM,GAAG,IAAI,CAAC;IACnC,OAAO,EAAE,OAAO,CAAC;IACjB,eAAe,EAAE,OAAO,CAAC;IACzB,kBAAkB,EAAE,OAAO,CAAC;IAEnC,OAAO,CAAC,aAAa,CAAgB;IAErC,OAAO,CAAC,aAAa,CAAc;IAEnC,OAAO,CAAC,WAAW,CAAc;IAEjC,0DAA0D;IAC1D,OAAO,KAAK,MAAM,GAEjB;IAED,OAAO,CAAC,QAAQ,CAAsB;;YAkCxB,IAAI;IAwFlB,OAAO,CAAC,iBAAiB;IAQzB;OACG;IACH,OAAO,CAAC,YAAY;IAyBpB,OAAO,CAAC,eAAe;IA6BP,iBAAiB,CAAC,QAAQ,EAAE,EAAE,CAAC,QAAQ,GAAG,IAAI;IA8CxC,eAAe;IAmBf,MAAM;IAe5B,SAAS,CAAC,aAAa,CAAC,aAAa,SAAM,GAAG,MAAM;IAOpD,SAAS,CAAC,UAAU,CAAC,CAAC,EAAE,MAAM;IAiF9B,MAAM,CAAC,MAAM,UAAO;IAkFpB,OAAO,CAAC,QAAQ;IA0EhB;;;;OAIG;WACW,aAAa,CAAC,MAAM,EAAE,EAAE,CAAC,MAAM,EAAE,SAAS,GAAE,MAAU,GAAG,UAAU;IA4BjF;;;;;OAKG;IACH,MAAM,CAAC,QAAQ,CAAC,MAAM,EAAE,EAAE,CAAC,MAAM,EAAE,SAAS,EAAE,MAAM,EAAE,QAAQ,EAAE,YAAY,GAAG,WAAW;WAwB5E,qBAAqB,CAAC,IAAI,EAAE,YAAY,EAAE,QAAQ,EAAE,GAAG,CAAC,MAAM,CAAC,EAAE,SAAS,GAAE,MAAY,GAAG,MAAM;WAoCjG,aAAa,CAAC,EAAE,EAAE,EAAE,CAAC,SAAS,GAAG,EAAE,CAAC,MAAM,GAAG,IAAI;IAW/D,OAAO,CAAC,MAAM,CAAC,SAAS,CAAyB;IAEjD;;;OAGG;WACW,eAAe,CAAC,GAAG,EAAE,GAAG,GAAG,MAAM,EAAE;IAqBjD,OAAO,CAAC,MAAM,CAAC,MAAM,CAAqC;IAC1D,OAAO,CAAC,MAAM,CAAC,SAAS,CAAoB;IAE5C;;;OAGG;WACW,cAAc,CAAC,GAAG,EAAE,GAAG,GAAG,MAAM,EAAE;IAmBhD;;;OAGG;WACW,wBAAwB,CAAC,SAAS,EAAE,MAAM,GAAG,YAAY;IAMvE;;;;OAIG;WACW,WAAW,CAAC,KAAK,EAAE,MAAM,EAAE,SAAS,EAAE,MAAM,GAAG,YAAY;WAa3D,oBAAoB,CAAC,GAAG,EAAE,EAAE,CAAC,MAAM,GAAG,YAAY;IAShE,8FAA8F;IAC9F,OAAO,CAAC,MAAM,CAAC,UAAU,CAKvB;IAEF,OAAO,CAAC,MAAM,CAAC,iBAAiB,CAAY;WAI9B,aAAa,CAAC,GAAG,EAAE,GAAG,GAAG,MAAM;CAoB9C"}
|