@datagrok-libraries/bio 0.0.4 → 0.0.8

package/src/seq-palettes.js

@@ -0,0 +1,38 @@
+export class SeqPaletteBase {
+    static makePalette(dt, simplified = false) {
+        const palette = {};
+        dt.forEach((cp) => {
+            const objList = cp[0];
+            const colour = cp[1];
+            objList.forEach((obj, ind) => {
+                palette[obj] = this.colourPalette[colour][simplified ? 0 : ind];
+            });
+        });
+        return palette;
+    }
+}
+/** Palette with shades of primary colors
+ */
+SeqPaletteBase.colourPalette = {
+    'orange': ['rgb(255,187,120)', 'rgb(245,167,100)', 'rgb(235,137,70)', 'rgb(205, 111, 71)'],
+    'all_green': ['rgb(44,160,44)', 'rgb(74,160,74)', 'rgb(23,103,57)', 'rgb(30,110,96)', 'rgb(60,131,95)',
+        'rgb(24,110,79)', 'rgb(152,223,138)', 'rgb(182, 223, 138)', 'rgb(152, 193, 138)'],
+    'all_blue': ['rgb(31,119,180)', 'rgb(23,190,207)', 'rgb(122, 102, 189)', 'rgb(158,218,229)', 'rgb(141, 124, 217)',
+        'rgb(31, 120, 150)'],
+    'magenta': ['rgb(162,106,192)', 'rgb(197,165,224)', 'rgb(208,113,218)'],
+    'red': ['rgb(214,39,40)', 'rgb(255,152,150)'],
+    'st_blue': ['rgb(23,190,207)', 'rgb(158,218,229)', 'rgb(31,119,180)'],
+    'dark_blue': ['rgb(31,119,180)', 'rgb(31, 120, 150)'],
+    'light_blue': ['rgb(23,190,207)', 'rgb(158,218,229)', 'rgb(108, 218, 229)', 'rgb(23,190,227)'],
+    'lilac_blue': ['rgb(124,102,211)', 'rgb(149,134,217)', 'rgb(97, 81, 150)'],
+    'dark_green': ['rgb(23,103,57)', 'rgb(30,110,96)', 'rgb(60,131,95)', 'rgb(24,110,79)'],
+    'green': ['rgb(44,160,44)', 'rgb(74,160,74)'],
+    'light_green': ['rgb(152,223,138)', 'rgb(182, 223, 138)', 'rgb(152, 193, 138)'],
+    'st_green': ['rgb(44,160,44)', 'rgb(152,223,138)', 'rgb(39, 174, 96)', 'rgb(74,160,74)'],
+    'pink': ['rgb(247,182,210)'],
+    'brown': ['rgb(140,86,75)', 'rgb(102, 62, 54)'],
+    'gray': ['rgb(127,127,127)', 'rgb(199,199,199)', 'rgb(196,156,148)', 'rgb(222, 222, 180)'],
+    'yellow': ['rgb(188,189,34)'],
+    'white': ['rgb(230,230,230)'],
+};
+//# sourceMappingURL=data:application/json;base64,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

package/src/sequence-encoder.d.ts

@@ -1,62 +1,62 @@
-declare type SideChainScale = {
-    [name: string]: number;
-};
-/**
- * Class to categorial encode/decode aligned amino acid residues sequence.
- *
- * @export
- * @class AlignedSequenceEncoder
- */
-export declare class AlignedSequenceEncoder {
-    protected aa2num: SideChainScale;
-    protected num2aa: {
-        [code: number]: string;
-    };
-    constructor(scale?: string);
-    /**
-       * Truncate NH2 and -COOH terminals of the given sequence.
-       *
-       * @static
-       * @param {string} seq The sequence provided.
-       * @return {string} Truncated sequence.
-       * @memberof AlignedSequenceEncoder
-       */
-    static _truncateSequence(seq: string): string;
-    /**
-       * Cuts auxiliary defises before a residue.
-       *
-       * @static
-       * @param {string} seq The sequence to process.
-       * @return {string} Processed sequence.
-       * @memberof AlignedSequenceEncoder
-       */
-    static _dropDefises(seq: string): string;
-    /**
-       * Performs truncation and cutting auxiliary defises.
-       *
-       * @static
-       * @param {string} sequence The sequence work under process.
-       * @return {string} Result of cleaning.
-       * @memberof AlignedSequenceEncoder
-       */
-    static clean(sequence: string): string;
-    /**
-       * Categorial encode of the sequence provided.
-       *
-       * @param {string} sequence The sequence.
-       * @return {number[]} Encoded vector.
-       * @memberof AlignedSequenceEncoder
-       */
-    encode(sequence: string): number[];
-    encodeLettter(letter: string): number;
-    /**
-       * Decode the encoded vector into the sequence back.
-       *
-       * @param {number[]} value The vector encoded.
-       * @return {string} Decoded sequence.
-       * @memberof AlignedSequenceEncoder
-       */
-    decode(value: number[]): string;
-}
-export {};
+declare type SideChainScale = {
+    [name: string]: number;
+};
+/**
+ * Class to categorial encode/decode aligned amino acid residues sequence.
+ *
+ * @export
+ * @class AlignedSequenceEncoder
+ */
+export declare class AlignedSequenceEncoder {
+    protected aa2num: SideChainScale;
+    protected num2aa: {
+        [code: number]: string;
+    };
+    constructor(scale?: string);
+    /**
+       * Truncate NH2 and -COOH terminals of the given sequence.
+       *
+       * @static
+       * @param {string} seq The sequence provided.
+       * @return {string} Truncated sequence.
+       * @memberof AlignedSequenceEncoder
+       */
+    static _truncateSequence(seq: string): string;
+    /**
+       * Cuts auxiliary defises before a residue.
+       *
+       * @static
+       * @param {string} seq The sequence to process.
+       * @return {string} Processed sequence.
+       * @memberof AlignedSequenceEncoder
+       */
+    static _dropDefises(seq: string): string;
+    /**
+       * Performs truncation and cutting auxiliary defises.
+       *
+       * @static
+       * @param {string} sequence The sequence work under process.
+       * @return {string} Result of cleaning.
+       * @memberof AlignedSequenceEncoder
+       */
+    static clean(sequence: string): string;
+    /**
+       * Categorial encode of the sequence provided.
+       *
+       * @param {string} sequence The sequence.
+       * @return {number[]} Encoded vector.
+       * @memberof AlignedSequenceEncoder
+       */
+    encode(sequence: string): number[];
+    encodeLettter(letter: string): number;
+    /**
+       * Decode the encoded vector into the sequence back.
+       *
+       * @param {number[]} value The vector encoded.
+       * @return {string} Decoded sequence.
+       * @memberof AlignedSequenceEncoder
+       */
+    decode(value: number[]): string;
+}
+export {};
 //# sourceMappingURL=sequence-encoder.d.ts.map

package/src/sequence-encoder.js

@@ -1,155 +1,155 @@
-import { assert } from '@datagrok-libraries/utils/src/operations';
-class SideChainScales {
-    static getAvailableScales() {
-        return Object.entries(this.scales).map(([k, _]) => k);
-    }
-    static getScale(name) {
-        assert(!(this.scales[name] === undefined), `Scale '${name}' was not found.`);
-        return this.scales[name];
-    }
-}
-SideChainScales.scales = {
-    // Wimley-White interfacial hydrophobicity scale
-    'WimleyWhite': {
-        '-': 0,
-        'A': 0.17,
-        'C': -0.24,
-        'D': -0.07,
-        'E': -0.01,
-        'F': -1.13,
-        'G': 0.01,
-        'H': 0.17,
-        'I': -0.31,
-        'K': 0.99,
-        'L': -0.56,
-        'M': -0.23,
-        'N': 0.42,
-        'P': 0.45,
-        'Q': 0.58,
-        'R': 0.81,
-        'S': 0.13,
-        'T': 0.14,
-        'V': 0.07,
-        'W': -1.85,
-        'Y': -0.94,
-    },
-    'categorial': {
-        '-': 0,
-        'A': 1,
-        'C': 2,
-        'D': 3,
-        'E': 4,
-        'F': 5,
-        'G': 6,
-        'H': 7,
-        'I': 8,
-        'K': 9,
-        'L': 10,
-        'M': 11,
-        'N': 12,
-        'P': 13,
-        'Q': 14,
-        'R': 15,
-        'S': 16,
-        'T': 17,
-        'V': 18,
-        'W': 19,
-        'Y': 20,
-    },
-};
-/**
- * Class to categorial encode/decode aligned amino acid residues sequence.
- *
- * @export
- * @class AlignedSequenceEncoder
- */
-export class AlignedSequenceEncoder {
-    constructor(scale = 'categorial') {
-        this.aa2num = SideChainScales.getScale(scale);
-        this.num2aa = {};
-        Object.entries(this.aa2num).forEach(([k, v]) => (this.num2aa[v] = k));
-    }
-    /**
-       * Truncate NH2 and -COOH terminals of the given sequence.
-       *
-       * @static
-       * @param {string} seq The sequence provided.
-       * @return {string} Truncated sequence.
-       * @memberof AlignedSequenceEncoder
-       */
-    static _truncateSequence(seq) {
-        let start = 0;
-        let end = seq.length;
-        const termina = ['NH2', 'COOH'];
-        if (seq.startsWith(termina[0])) {
-            const l = termina[0].length; // Cut only 'NH2' without following '-'.
-            assert(seq[l] == '-', `Wrong sequence format: ${termina[0]} without following '-' in '${seq}'.`);
-            start = l;
-        }
-        if (seq.endsWith(termina[1])) {
-            const l = termina[1].length + 1; // Cut both 'COOH' and precending '-'.
-            assert(seq[end - l] == '-', `Wrong sequence format: ${termina[1]} without '-' precending in '${seq}'.`);
-            end -= l;
-        }
-        return seq.substring(start, end);
-    }
-    /**
-       * Cuts auxiliary defises before a residue.
-       *
-       * @static
-       * @param {string} seq The sequence to process.
-       * @return {string} Processed sequence.
-       * @memberof AlignedSequenceEncoder
-       */
-    static _dropDefises(seq) {
-        return seq.replace(/(-)([^-]+)/g, '$2');
-    }
-    /**
-       * Performs truncation and cutting auxiliary defises.
-       *
-       * @static
-       * @param {string} sequence The sequence work under process.
-       * @return {string} Result of cleaning.
-       * @memberof AlignedSequenceEncoder
-       */
-    static clean(sequence) {
-        return AlignedSequenceEncoder._dropDefises(AlignedSequenceEncoder._truncateSequence(sequence));
-    }
-    /**
-       * Categorial encode of the sequence provided.
-       *
-       * @param {string} sequence The sequence.
-       * @return {number[]} Encoded vector.
-       * @memberof AlignedSequenceEncoder
-       */
-    encode(sequence) {
-        const nItems = sequence.length;
-        const values = new Array(nItems).fill(0);
-        for (let i = 0; i < nItems; ++i) {
-            const char = sequence[i];
-            assert(char in this.aa2num, `Unknown char '${char}' found in sequence '${sequence}'`);
-            values[i] = this.encodeLettter(char);
-        }
-        return values;
-    }
-    encodeLettter(letter) {
-        return this.aa2num[letter];
-    }
-    /**
-       * Decode the encoded vector into the sequence back.
-       *
-       * @param {number[]} value The vector encoded.
-       * @return {string} Decoded sequence.
-       * @memberof AlignedSequenceEncoder
-       */
-    decode(value) {
-        let s = '';
-        for (let i = 0; i < value.length; ++i) {
-            const code = value[i];
-            assert(code in this.num2aa, `Unknown code '${code}' found in vector '${value}'`);
-            s += this.num2aa[code];
-        }
-        return s;
-    }
-}
-//# sourceMappingURL=data:application/json;base64,{"version":3,"file":"sequence-encoder.js","sourceRoot":"","sources":["sequence-encoder.ts"],"names":[],"mappings":"AAAA,OAAO,EAAC,MAAM,EAAC,MAAM,0CAA0C,CAAC;AAKhE,MAAM,eAAe;IAmDnB,MAAM,CAAC,kBAAkB;QACvB,OAAO,MAAM,CAAC,OAAO,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC;IACxD,CAAC;IAED,MAAM,CAAC,QAAQ,CAAC,IAAY;QAC1B,MAAM,CAAC,CAAC,CAAC,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,KAAK,SAAS,CAAC,EAAE,UAAU,IAAI,kBAAkB,CAAC,CAAC;QAC7E,OAAO,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC;IAC3B,CAAC;;AAzDM,sBAAM,GAA6B;IACxC,gDAAgD;IAChD,aAAa,EAAE;QACb,GAAG,EAAE,CAAC;QACN,GAAG,EAAE,IAAI;QACT,GAAG,EAAE,CAAC,IAAI;QACV,GAAG,EAAE,CAAC,IAAI;QACV,GAAG,EAAE,CAAC,IAAI;QACV,GAAG,EAAE,CAAC,IAAI;QACV,GAAG,EAAE,IAAI;QACT,GAAG,EAAE,IAAI;QACT,GAAG,EAAE,CAAC,IAAI;QACV,GAAG,EAAE,IAAI;QACT,GAAG,EAAE,CAAC,IAAI;QACV,GAAG,EAAE,CAAC,IAAI;QACV,GAAG,EAAE,IAAI;QACT,GAAG,EAAE,IAAI;QACT,GAAG,EAAE,IAAI;QACT,GAAG,EAAE,IAAI;QACT,GAAG,EAAE,IAAI;QACT,GAAG,EAAE,IAAI;QACT,GAAG,EAAE,IAAI;QACT,GAAG,EAAE,CAAC,IAAI;QACV,GAAG,EAAE,CAAC,IAAI;KACX;IACD,YAAY,EAAE;QACZ,GAAG,EAAE,CAAC;QACN,GAAG,EAAE,CAAC;QACN,GAAG,EAAE,CAAC;QACN,GAAG,EAAE,CAAC;QACN,GAAG,EAAE,CAAC;QACN,GAAG,EAAE,CAAC;QACN,GAAG,EAAE,CAAC;QACN,GAAG,EAAE,CAAC;QACN,GAAG,EAAE,CAAC;QACN,GAAG,EAAE,CAAC;QACN,GAAG,EAAE,EAAE;QACP,GAAG,EAAE,EAAE;QACP,GAAG,EAAE,EAAE;QACP,GAAG,EAAE,EAAE;QACP,GAAG,EAAE,EAAE;QACP,GAAG,EAAE,EAAE;QACP,GAAG,EAAE,EAAE;QACP,GAAG,EAAE,EAAE;QACP,GAAG,EAAE,EAAE;QACP,GAAG,EAAE,EAAE;QACP,GAAG,EAAE,EAAE;KACR;CACF,CAAC;AAYJ;;;;;GAKG;AACH,MAAM,OAAO,sBAAsB;IAIjC,YAAY,QAAgB,YAAY;QACtC,IAAI,CAAC,MAAM,GAAG,eAAe,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC;QAC9C,IAAI,CAAC,MAAM,GAAG,EAAE,CAAC;QACjB,MAAM,CAAC,OAAO,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC;IACxE,CAAC;IAED;;;;;;;SAOK;IACL,MAAM,CAAC,iBAAiB,CAAC,GAAW;QAClC,IAAI,KAAK,GAAG,CAAC,CAAC;QACd,IAAI,GAAG,GAAG,GAAG,CAAC,MAAM,CAAC;QACrB,MAAM,OAAO,GAAG,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC;QAEhC,IAAI,GAAG,CAAC,UAAU,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,EAAE;YAC9B,MAAM,CAAC,GAAG,OAAO,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,wCAAwC;YACrE,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,GAAG,EAAE,0BAA0B,OAAO,CAAC,CAAC,CAAC,8BAA8B,GAAG,IAAI,CAAC,CAAC;YACjG,KAAK,GAAG,CAAC,CAAC;SACX;QACD,IAAI,GAAG,CAAC,QAAQ,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,EAAE;YAC5B,MAAM,CAAC,GAAG,OAAO,CAAC,CAAC,CAAC,CAAC,MAAM,GAAC,CAAC,CAAC,CAAC,sCAAsC;YACrE,MAAM,CAAC,GAAG,CAAC,GAAG,GAAC,CAAC,CAAC,IAAI,GAAG,EAAE,0BAA0B,OAAO,CAAC,CAAC,CAAC,+BAA+B,GAAG,IAAI,CAAC,CAAC;YACtG,GAAG,IAAI,CAAC,CAAC;SACV;QACD,OAAO,GAAG,CAAC,SAAS,CAAC,KAAK,EAAE,GAAG,CAAC,CAAC;IACnC,CAAC;IAED;;;;;;;SAOK;IACL,MAAM,CAAC,YAAY,CAAC,GAAW;QAC7B,OAAO,GAAG,CAAC,OAAO,CAAC,aAAa,EAAE,IAAI,CAAC,CAAC;IAC1C,CAAC;IAED;;;;;;;SAOK;IACL,MAAM,CAAC,KAAK,CAAC,QAAgB;QAC3B,OAAO,sBAAsB,CAAC,YAAY,CAAC,sBAAsB,CAAC,iBAAiB,CAAC,QAAQ,CAAC,CAAC,CAAC;IACjG,CAAC;IAED;;;;;;SAMK;IACE,MAAM,CAAC,QAAgB;QAC5B,MAAM,MAAM,GAAG,QAAQ,CAAC,MAAM,CAAC;QAC/B,MAAM,MAAM,GAAG,IAAI,KAAK,CAAC,MAAM,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;QAEzC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,MAAM,EAAE,EAAE,CAAC,EAAE;YAC/B,MAAM,IAAI,GAAG,QAAQ,CAAC,CAAC,CAAC,CAAC;YAEzB,MAAM,CAAC,IAAI,IAAI,IAAI,CAAC,MAAM,EAAE,iBAAiB,IAAI,wBAAwB,QAAQ,GAAG,CAAC,CAAC;YAEtF,MAAM,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,aAAa,CAAC,IAAI,CAAC,CAAC;SACtC;QACD,OAAO,MAAM,CAAC;IAChB,CAAC;IAEM,aAAa,CAAC,MAAc;QACjC,OAAO,IAAI,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC;IAC7B,CAAC;IAED;;;;;;SAMK;IACE,MAAM,CAAC,KAAe;QAC3B,IAAI,CAAC,GAAW,EAAE,CAAC;QAEnB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,CAAC,MAAM,EAAE,EAAE,CAAC,EAAE;YACrC,MAAM,IAAI,GAAG,KAAK,CAAC,CAAC,CAAC,CAAC;YAEtB,MAAM,CAAC,IAAI,IAAI,IAAI,CAAC,MAAM,EAAE,iBAAiB,IAAI,sBAAsB,KAAK,GAAG,CAAC,CAAC;YAEjF,CAAC,IAAI,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC;SACxB;QACD,OAAO,CAAC,CAAC;IACX,CAAC;CACF","sourcesContent":["import {assert} from '@datagrok-libraries/utils/src/operations';\r\n\r\ntype SideChainScale = {[name: string]: number};\r\ntype SideChainScaleCollection = {[name: string]: SideChainScale};\r\n\r\nclass SideChainScales {\r\n  static scales: SideChainScaleCollection = {\r\n    // Wimley-White interfacial hydrophobicity scale\r\n    'WimleyWhite': {\r\n      '-': 0,\r\n      'A': 0.17,\r\n      'C': -0.24,\r\n      'D': -0.07, // Asp-: 1.23\r\n      'E': -0.01, // Glu-: 2.02\r\n      'F': -1.13, //\r\n      'G': 0.01,\r\n      'H': 0.17, // His+: 0.96\r\n      'I': -0.31,\r\n      'K': 0.99, // Lys+\r\n      'L': -0.56,\r\n      'M': -0.23,\r\n      'N': 0.42,\r\n      'P': 0.45,\r\n      'Q': 0.58,\r\n      'R': 0.81, // Arg+\r\n      'S': 0.13,\r\n      'T': 0.14,\r\n      'V': 0.07,\r\n      'W': -1.85,\r\n      'Y': -0.94,\r\n    },\r\n    'categorial': {\r\n      '-': 0,\r\n      'A': 1,\r\n      'C': 2,\r\n      'D': 3,\r\n      'E': 4,\r\n      'F': 5,\r\n      'G': 6,\r\n      'H': 7,\r\n      'I': 8,\r\n      'K': 9,\r\n      'L': 10,\r\n      'M': 11,\r\n      'N': 12,\r\n      'P': 13,\r\n      'Q': 14,\r\n      'R': 15,\r\n      'S': 16,\r\n      'T': 17,\r\n      'V': 18,\r\n      'W': 19,\r\n      'Y': 20,\r\n    },\r\n  };\r\n\r\n  static getAvailableScales(): string[] {\r\n    return Object.entries(this.scales).map(([k, _]) => k);\r\n  }\r\n\r\n  static getScale(name: string): SideChainScale {\r\n    assert(!(this.scales[name] === undefined), `Scale '${name}' was not found.`);\r\n    return this.scales[name];\r\n  }\r\n}\r\n\r\n/**\r\n * Class to categorial encode/decode aligned amino acid residues sequence.\r\n *\r\n * @export\r\n * @class AlignedSequenceEncoder\r\n */\r\nexport class AlignedSequenceEncoder {\r\n  protected aa2num: SideChainScale;\r\n  protected num2aa: {[code: number]: string};\r\n\r\n  constructor(scale: string = 'categorial') {\r\n    this.aa2num = SideChainScales.getScale(scale);\r\n    this.num2aa = {};\r\n    Object.entries(this.aa2num).forEach(([k, v]) => (this.num2aa[v] = k));\r\n  }\r\n\r\n  /**\r\n     * Truncate NH2 and -COOH terminals of the given sequence.\r\n     *\r\n     * @static\r\n     * @param {string} seq The sequence provided.\r\n     * @return {string} Truncated sequence.\r\n     * @memberof AlignedSequenceEncoder\r\n     */\r\n  static _truncateSequence(seq: string): string {\r\n    let start = 0;\r\n    let end = seq.length;\r\n    const termina = ['NH2', 'COOH'];\r\n\r\n    if (seq.startsWith(termina[0])) {\r\n      const l = termina[0].length; // Cut only 'NH2' without following '-'.\r\n      assert(seq[l] == '-', `Wrong sequence format: ${termina[0]} without following '-' in '${seq}'.`);\r\n      start = l;\r\n    }\r\n    if (seq.endsWith(termina[1])) {\r\n      const l = termina[1].length+1; // Cut both 'COOH' and precending '-'.\r\n      assert(seq[end-l] == '-', `Wrong sequence format: ${termina[1]} without '-' precending in '${seq}'.`);\r\n      end -= l;\r\n    }\r\n    return seq.substring(start, end);\r\n  }\r\n\r\n  /**\r\n     * Cuts auxiliary defises before a residue.\r\n     *\r\n     * @static\r\n     * @param {string} seq The sequence to process.\r\n     * @return {string} Processed sequence.\r\n     * @memberof AlignedSequenceEncoder\r\n     */\r\n  static _dropDefises(seq: string): string {\r\n    return seq.replace(/(-)([^-]+)/g, '$2');\r\n  }\r\n\r\n  /**\r\n     * Performs truncation and cutting auxiliary defises.\r\n     *\r\n     * @static\r\n     * @param {string} sequence The sequence work under process.\r\n     * @return {string} Result of cleaning.\r\n     * @memberof AlignedSequenceEncoder\r\n     */\r\n  static clean(sequence: string): string {\r\n    return AlignedSequenceEncoder._dropDefises(AlignedSequenceEncoder._truncateSequence(sequence));\r\n  }\r\n\r\n  /**\r\n     * Categorial encode of the sequence provided.\r\n     *\r\n     * @param {string} sequence The sequence.\r\n     * @return {number[]} Encoded vector.\r\n     * @memberof AlignedSequenceEncoder\r\n     */\r\n  public encode(sequence: string): number[] {\r\n    const nItems = sequence.length;\r\n    const values = new Array(nItems).fill(0);\r\n\r\n    for (let i = 0; i < nItems; ++i) {\r\n      const char = sequence[i];\r\n\r\n      assert(char in this.aa2num, `Unknown char '${char}' found in sequence '${sequence}'`);\r\n\r\n      values[i] = this.encodeLettter(char);\r\n    }\r\n    return values;\r\n  }\r\n\r\n  public encodeLettter(letter: string): number {\r\n    return this.aa2num[letter];\r\n  }\r\n\r\n  /**\r\n     * Decode the encoded vector into the sequence back.\r\n     *\r\n     * @param {number[]} value The vector encoded.\r\n     * @return {string} Decoded sequence.\r\n     * @memberof AlignedSequenceEncoder\r\n     */\r\n  public decode(value: number[]): string {\r\n    let s: string = '';\r\n\r\n    for (let i = 0; i < value.length; ++i) {\r\n      const code = value[i];\r\n\r\n      assert(code in this.num2aa, `Unknown code '${code}' found in vector '${value}'`);\r\n\r\n      s += this.num2aa[code];\r\n    }\r\n    return s;\r\n  }\r\n}\r\n"]}
+import { assert } from '@datagrok-libraries/utils/src/vector-operations';
+class SideChainScales {
+    static getAvailableScales() {
+        return Object.entries(this.scales).map(([k, _]) => k);
+    }
+    static getScale(name) {
+        assert(!(this.scales[name] === undefined), `Scale '${name}' was not found.`);
+        return this.scales[name];
+    }
+}
+SideChainScales.scales = {
+    // Wimley-White interfacial hydrophobicity scale
+    'WimleyWhite': {
+        '-': 0,
+        'A': 0.17,
+        'C': -0.24,
+        'D': -0.07,
+        'E': -0.01,
+        'F': -1.13,
+        'G': 0.01,
+        'H': 0.17,
+        'I': -0.31,
+        'K': 0.99,
+        'L': -0.56,
+        'M': -0.23,
+        'N': 0.42,
+        'P': 0.45,
+        'Q': 0.58,
+        'R': 0.81,
+        'S': 0.13,
+        'T': 0.14,
+        'V': 0.07,
+        'W': -1.85,
+        'Y': -0.94,
+    },
+    'categorial': {
+        '-': 0,
+        'A': 1,
+        'C': 2,
+        'D': 3,
+        'E': 4,
+        'F': 5,
+        'G': 6,
+        'H': 7,
+        'I': 8,
+        'K': 9,
+        'L': 10,
+        'M': 11,
+        'N': 12,
+        'P': 13,
+        'Q': 14,
+        'R': 15,
+        'S': 16,
+        'T': 17,
+        'V': 18,
+        'W': 19,
+        'Y': 20,
+    },
+};
+/**
+ * Class to categorial encode/decode aligned amino acid residues sequence.
+ *
+ * @export
+ * @class AlignedSequenceEncoder
+ */
+export class AlignedSequenceEncoder {
+    constructor(scale = 'categorial') {
+        this.aa2num = SideChainScales.getScale(scale);
+        this.num2aa = {};
+        Object.entries(this.aa2num).forEach(([k, v]) => (this.num2aa[v] = k));
+    }
+    /**
+       * Truncate NH2 and -COOH terminals of the given sequence.
+       *
+       * @static
+       * @param {string} seq The sequence provided.
+       * @return {string} Truncated sequence.
+       * @memberof AlignedSequenceEncoder
+       */
+    static _truncateSequence(seq) {
+        let start = 0;
+        let end = seq.length;
+        const termina = ['NH2', 'COOH'];
+        if (seq.startsWith(termina[0])) {
+            const l = termina[0].length; // Cut only 'NH2' without following '-'.
+            assert(seq[l] == '-', `Wrong sequence format: ${termina[0]} without following '-' in '${seq}'.`);
+            start = l;
+        }
+        if (seq.endsWith(termina[1])) {
+            const l = termina[1].length + 1; // Cut both 'COOH' and precending '-'.
+            assert(seq[end - l] == '-', `Wrong sequence format: ${termina[1]} without '-' precending in '${seq}'.`);
+            end -= l;
+        }
+        return seq.substring(start, end);
+    }
+    /**
+       * Cuts auxiliary defises before a residue.
+       *
+       * @static
+       * @param {string} seq The sequence to process.
+       * @return {string} Processed sequence.
+       * @memberof AlignedSequenceEncoder
+       */
+    static _dropDefises(seq) {
+        return seq.replace(/(-)([^-]+)/g, '$2');
+    }
+    /**
+       * Performs truncation and cutting auxiliary defises.
+       *
+       * @static
+       * @param {string} sequence The sequence work under process.
+       * @return {string} Result of cleaning.
+       * @memberof AlignedSequenceEncoder
+       */
+    static clean(sequence) {
+        return AlignedSequenceEncoder._dropDefises(AlignedSequenceEncoder._truncateSequence(sequence));
+    }
+    /**
+       * Categorial encode of the sequence provided.
+       *
+       * @param {string} sequence The sequence.
+       * @return {number[]} Encoded vector.
+       * @memberof AlignedSequenceEncoder
+       */
+    encode(sequence) {
+        const nItems = sequence.length;
+        const values = new Array(nItems).fill(0);
+        for (let i = 0; i < nItems; ++i) {
+            const char = sequence[i];
+            assert(char in this.aa2num, `Unknown char '${char}' found in sequence '${sequence}'`);
+            values[i] = this.encodeLettter(char);
+        }
+        return values;
+    }
+    encodeLettter(letter) {
+        return this.aa2num[letter];
+    }
+    /**
+       * Decode the encoded vector into the sequence back.
+       *
+       * @param {number[]} value The vector encoded.
+       * @return {string} Decoded sequence.
+       * @memberof AlignedSequenceEncoder
+       */
+    decode(value) {
+        let s = '';
+        for (let i = 0; i < value.length; ++i) {
+            const code = value[i];
+            assert(code in this.num2aa, `Unknown code '${code}' found in vector '${value}'`);
+            s += this.num2aa[code];
+        }
+        return s;
+    }
+}
+//# sourceMappingURL=data:application/json;base64,{"version":3,"file":"sequence-encoder.js","sourceRoot":"","sources":["sequence-encoder.ts"],"names":[],"mappings":"AAAA,OAAO,EAAC,MAAM,EAAC,MAAM,iDAAiD,CAAC;AAKvE,MAAM,eAAe;IAmDnB,MAAM,CAAC,kBAAkB;QACvB,OAAO,MAAM,CAAC,OAAO,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC;IACxD,CAAC;IAED,MAAM,CAAC,QAAQ,CAAC,IAAY;QAC1B,MAAM,CAAC,CAAC,CAAC,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,KAAK,SAAS,CAAC,EAAE,UAAU,IAAI,kBAAkB,CAAC,CAAC;QAC7E,OAAO,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC;IAC3B,CAAC;;AAzDM,sBAAM,GAA6B;IACxC,gDAAgD;IAChD,aAAa,EAAE;QACb,GAAG,EAAE,CAAC;QACN,GAAG,EAAE,IAAI;QACT,GAAG,EAAE,CAAC,IAAI;QACV,GAAG,EAAE,CAAC,IAAI;QACV,GAAG,EAAE,CAAC,IAAI;QACV,GAAG,EAAE,CAAC,IAAI;QACV,GAAG,EAAE,IAAI;QACT,GAAG,EAAE,IAAI;QACT,GAAG,EAAE,CAAC,IAAI;QACV,GAAG,EAAE,IAAI;QACT,GAAG,EAAE,CAAC,IAAI;QACV,GAAG,EAAE,CAAC,IAAI;QACV,GAAG,EAAE,IAAI;QACT,GAAG,EAAE,IAAI;QACT,GAAG,EAAE,IAAI;QACT,GAAG,EAAE,IAAI;QACT,GAAG,EAAE,IAAI;QACT,GAAG,EAAE,IAAI;QACT,GAAG,EAAE,IAAI;QACT,GAAG,EAAE,CAAC,IAAI;QACV,GAAG,EAAE,CAAC,IAAI;KACX;IACD,YAAY,EAAE;QACZ,GAAG,EAAE,CAAC;QACN,GAAG,EAAE,CAAC;QACN,GAAG,EAAE,CAAC;QACN,GAAG,EAAE,CAAC;QACN,GAAG,EAAE,CAAC;QACN,GAAG,EAAE,CAAC;QACN,GAAG,EAAE,CAAC;QACN,GAAG,EAAE,CAAC;QACN,GAAG,EAAE,CAAC;QACN,GAAG,EAAE,CAAC;QACN,GAAG,EAAE,EAAE;QACP,GAAG,EAAE,EAAE;QACP,GAAG,EAAE,EAAE;QACP,GAAG,EAAE,EAAE;QACP,GAAG,EAAE,EAAE;QACP,GAAG,EAAE,EAAE;QACP,GAAG,EAAE,EAAE;QACP,GAAG,EAAE,EAAE;QACP,GAAG,EAAE,EAAE;QACP,GAAG,EAAE,EAAE;QACP,GAAG,EAAE,EAAE;KACR;CACF,CAAC;AAYJ;;;;;GAKG;AACH,MAAM,OAAO,sBAAsB;IAIjC,YAAY,QAAgB,YAAY;QACtC,IAAI,CAAC,MAAM,GAAG,eAAe,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC;QAC9C,IAAI,CAAC,MAAM,GAAG,EAAE,CAAC;QACjB,MAAM,CAAC,OAAO,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC;IACxE,CAAC;IAED;;;;;;;SAOK;IACL,MAAM,CAAC,iBAAiB,CAAC,GAAW;QAClC,IAAI,KAAK,GAAG,CAAC,CAAC;QACd,IAAI,GAAG,GAAG,GAAG,CAAC,MAAM,CAAC;QACrB,MAAM,OAAO,GAAG,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC;QAEhC,IAAI,GAAG,CAAC,UAAU,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,EAAE;YAC9B,MAAM,CAAC,GAAG,OAAO,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,wCAAwC;YACrE,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,GAAG,EAAE,0BAA0B,OAAO,CAAC,CAAC,CAAC,8BAA8B,GAAG,IAAI,CAAC,CAAC;YACjG,KAAK,GAAG,CAAC,CAAC;SACX;QACD,IAAI,GAAG,CAAC,QAAQ,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,EAAE;YAC5B,MAAM,CAAC,GAAG,OAAO,CAAC,CAAC,CAAC,CAAC,MAAM,GAAC,CAAC,CAAC,CAAC,sCAAsC;YACrE,MAAM,CAAC,GAAG,CAAC,GAAG,GAAC,CAAC,CAAC,IAAI,GAAG,EAAE,0BAA0B,OAAO,CAAC,CAAC,CAAC,+BAA+B,GAAG,IAAI,CAAC,CAAC;YACtG,GAAG,IAAI,CAAC,CAAC;SACV;QACD,OAAO,GAAG,CAAC,SAAS,CAAC,KAAK,EAAE,GAAG,CAAC,CAAC;IACnC,CAAC;IAED;;;;;;;SAOK;IACL,MAAM,CAAC,YAAY,CAAC,GAAW;QAC7B,OAAO,GAAG,CAAC,OAAO,CAAC,aAAa,EAAE,IAAI,CAAC,CAAC;IAC1C,CAAC;IAED;;;;;;;SAOK;IACL,MAAM,CAAC,KAAK,CAAC,QAAgB;QAC3B,OAAO,sBAAsB,CAAC,YAAY,CAAC,sBAAsB,CAAC,iBAAiB,CAAC,QAAQ,CAAC,CAAC,CAAC;IACjG,CAAC;IAED;;;;;;SAMK;IACE,MAAM,CAAC,QAAgB;QAC5B,MAAM,MAAM,GAAG,QAAQ,CAAC,MAAM,CAAC;QAC/B,MAAM,MAAM,GAAG,IAAI,KAAK,CAAC,MAAM,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;QAEzC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,MAAM,EAAE,EAAE,CAAC,EAAE;YAC/B,MAAM,IAAI,GAAG,QAAQ,CAAC,CAAC,CAAC,CAAC;YAEzB,MAAM,CAAC,IAAI,IAAI,IAAI,CAAC,MAAM,EAAE,iBAAiB,IAAI,wBAAwB,QAAQ,GAAG,CAAC,CAAC;YAEtF,MAAM,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,aAAa,CAAC,IAAI,CAAC,CAAC;SACtC;QACD,OAAO,MAAM,CAAC;IAChB,CAAC;IAEM,aAAa,CAAC,MAAc;QACjC,OAAO,IAAI,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC;IAC7B,CAAC;IAED;;;;;;SAMK;IACE,MAAM,CAAC,KAAe;QAC3B,IAAI,CAAC,GAAW,EAAE,CAAC;QAEnB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,CAAC,MAAM,EAAE,EAAE,CAAC,EAAE;YACrC,MAAM,IAAI,GAAG,KAAK,CAAC,CAAC,CAAC,CAAC;YAEtB,MAAM,CAAC,IAAI,IAAI,IAAI,CAAC,MAAM,EAAE,iBAAiB,IAAI,sBAAsB,KAAK,GAAG,CAAC,CAAC;YAEjF,CAAC,IAAI,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC;SACxB;QACD,OAAO,CAAC,CAAC;IACX,CAAC;CACF","sourcesContent":["import {assert} from '@datagrok-libraries/utils/src/vector-operations';\n\ntype SideChainScale = {[name: string]: number};\ntype SideChainScaleCollection = {[name: string]: SideChainScale};\n\nclass SideChainScales {\n  static scales: SideChainScaleCollection = {\n    // Wimley-White interfacial hydrophobicity scale\n    'WimleyWhite': {\n      '-': 0,\n      'A': 0.17,\n      'C': -0.24,\n      'D': -0.07, // Asp-: 1.23\n      'E': -0.01, // Glu-: 2.02\n      'F': -1.13, //\n      'G': 0.01,\n      'H': 0.17, // His+: 0.96\n      'I': -0.31,\n      'K': 0.99, // Lys+\n      'L': -0.56,\n      'M': -0.23,\n      'N': 0.42,\n      'P': 0.45,\n      'Q': 0.58,\n      'R': 0.81, // Arg+\n      'S': 0.13,\n      'T': 0.14,\n      'V': 0.07,\n      'W': -1.85,\n      'Y': -0.94,\n    },\n    'categorial': {\n      '-': 0,\n      'A': 1,\n      'C': 2,\n      'D': 3,\n      'E': 4,\n      'F': 5,\n      'G': 6,\n      'H': 7,\n      'I': 8,\n      'K': 9,\n      'L': 10,\n      'M': 11,\n      'N': 12,\n      'P': 13,\n      'Q': 14,\n      'R': 15,\n      'S': 16,\n      'T': 17,\n      'V': 18,\n      'W': 19,\n      'Y': 20,\n    },\n  };\n\n  static getAvailableScales(): string[] {\n    return Object.entries(this.scales).map(([k, _]) => k);\n  }\n\n  static getScale(name: string): SideChainScale {\n    assert(!(this.scales[name] === undefined), `Scale '${name}' was not found.`);\n    return this.scales[name];\n  }\n}\n\n/**\n * Class to categorial encode/decode aligned amino acid residues sequence.\n *\n * @export\n * @class AlignedSequenceEncoder\n */\nexport class AlignedSequenceEncoder {\n  protected aa2num: SideChainScale;\n  protected num2aa: {[code: number]: string};\n\n  constructor(scale: string = 'categorial') {\n    this.aa2num = SideChainScales.getScale(scale);\n    this.num2aa = {};\n    Object.entries(this.aa2num).forEach(([k, v]) => (this.num2aa[v] = k));\n  }\n\n  /**\n     * Truncate NH2 and -COOH terminals of the given sequence.\n     *\n     * @static\n     * @param {string} seq The sequence provided.\n     * @return {string} Truncated sequence.\n     * @memberof AlignedSequenceEncoder\n     */\n  static _truncateSequence(seq: string): string {\n    let start = 0;\n    let end = seq.length;\n    const termina = ['NH2', 'COOH'];\n\n    if (seq.startsWith(termina[0])) {\n      const l = termina[0].length; // Cut only 'NH2' without following '-'.\n      assert(seq[l] == '-', `Wrong sequence format: ${termina[0]} without following '-' in '${seq}'.`);\n      start = l;\n    }\n    if (seq.endsWith(termina[1])) {\n      const l = termina[1].length+1; // Cut both 'COOH' and precending '-'.\n      assert(seq[end-l] == '-', `Wrong sequence format: ${termina[1]} without '-' precending in '${seq}'.`);\n      end -= l;\n    }\n    return seq.substring(start, end);\n  }\n\n  /**\n     * Cuts auxiliary defises before a residue.\n     *\n     * @static\n     * @param {string} seq The sequence to process.\n     * @return {string} Processed sequence.\n     * @memberof AlignedSequenceEncoder\n     */\n  static _dropDefises(seq: string): string {\n    return seq.replace(/(-)([^-]+)/g, '$2');\n  }\n\n  /**\n     * Performs truncation and cutting auxiliary defises.\n     *\n     * @static\n     * @param {string} sequence The sequence work under process.\n     * @return {string} Result of cleaning.\n     * @memberof AlignedSequenceEncoder\n     */\n  static clean(sequence: string): string {\n    return AlignedSequenceEncoder._dropDefises(AlignedSequenceEncoder._truncateSequence(sequence));\n  }\n\n  /**\n     * Categorial encode of the sequence provided.\n     *\n     * @param {string} sequence The sequence.\n     * @return {number[]} Encoded vector.\n     * @memberof AlignedSequenceEncoder\n     */\n  public encode(sequence: string): number[] {\n    const nItems = sequence.length;\n    const values = new Array(nItems).fill(0);\n\n    for (let i = 0; i < nItems; ++i) {\n      const char = sequence[i];\n\n      assert(char in this.aa2num, `Unknown char '${char}' found in sequence '${sequence}'`);\n\n      values[i] = this.encodeLettter(char);\n    }\n    return values;\n  }\n\n  public encodeLettter(letter: string): number {\n    return this.aa2num[letter];\n  }\n\n  /**\n     * Decode the encoded vector into the sequence back.\n     *\n     * @param {number[]} value The vector encoded.\n     * @return {string} Decoded sequence.\n     * @memberof AlignedSequenceEncoder\n     */\n  public decode(value: number[]): string {\n    let s: string = '';\n\n    for (let i = 0; i < value.length; ++i) {\n      const code = value[i];\n\n      assert(code in this.num2aa, `Unknown code '${code}' found in vector '${value}'`);\n\n      s += this.num2aa[code];\n    }\n    return s;\n  }\n}\n"]}

package/src/viewers/web-logo.d.ts

@@ -0,0 +1,67 @@
+import * as DG from 'datagrok-api/dg';
+import { StringDictionary } from '@datagrok-libraries/utils/src/type-declarations';
+declare module 'datagrok-api/src/grid' {
+    interface Rect {
+        contains(x: number, y: number): boolean;
+    }
+}
+declare global {
+    interface HTMLCanvasElement {
+        getCursorPosition(event: MouseEvent): DG.Point;
+    }
+}
+export declare class PositionMonomerInfo {
+    /** Sequences count with monomer in position
+     */
+    count: number;
+    /** Remember screen coords rect
+     */
+    bounds: DG.Rect;
+    constructor();
+}
+export declare class PositionInfo {
+    readonly name: string;
+    freq: {
+        [m: string]: PositionMonomerInfo;
+    };
+    rowCount: number;
+    /** freq = {}, rowCount = 0
+     * @param {string} name Name of position ('111A', '111.1', etc)
+     */
+    constructor(name: string);
+}
+export declare class WebLogo extends DG.JsViewer {
+    static residuesSet: string;
+    protected cp: StringDictionary | null;
+    private canvas?;
+    private slider?;
+    private textBaseline;
+    private axisHeight;
+    private positionWidth;
+    private seqCol;
+    private positions;
+    private rowsMasked;
+    private rowsNull;
+    minHeight: number;
+    maxHeight: number;
+    considerNullSequences: boolean;
+    sequenceColumnName: string;
+    startPositionName: string;
+    endPositionName: string;
+    private positionNames;
+    private startPosition;
+    private endPosition;
+    private get Length();
+    constructor();
+    init(): Promise<void>;
+    rootOnSizeChanged(args: any): void;
+    /** Assigns {@link seqCol} and {@link cp} based on {@link sequenceColumnName} and calls {@link render}().
+     */
+    updateSeqCol(): void;
+    onPropertyChanged(property: DG.Property): void;
+    onTableAttached(): void;
+    protected _nullSequence(fillerResidue?: string): string;
+    protected _calculate(): void;
+    render(recalc?: boolean): void;
+}
+//# sourceMappingURL=web-logo.d.ts.map

package/src/viewers/web-logo.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"web-logo.d.ts","sourceRoot":"","sources":["web-logo.ts"],"names":[],"mappings":"AAEA,OAAO,KAAK,EAAE,MAAM,iBAAiB,CAAC;AAItC,OAAO,EAAC,gBAAgB,EAAC,MAAM,iDAAiD,CAAC;AAOjF,OAAO,QAAQ,uBAAuB,CAAC;IACrC,UAAU,IAAI;QACZ,QAAQ,CAAC,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC;KACzC;CACF;AAED,OAAO,CAAC,MAAM,CAAC;IACb,UAAU,iBAAiB;QACzB,iBAAiB,CAAC,KAAK,EAAE,UAAU,GAAG,EAAE,CAAC,KAAK,CAAC;KAChD;CACF;AAWD,qBAAa,mBAAmB;IAC9B;OACG;IACH,KAAK,EAAE,MAAM,CAAC;IAEd;OACG;IACH,MAAM,EAAE,EAAE,CAAC,IAAI,CAAC;;CAMjB;AAED,qBAAa,YAAY;IACvB,SAAgB,IAAI,EAAE,MAAM,CAAC;IAC7B,IAAI,EAAE;QAAE,CAAC,CAAC,EAAE,MAAM,GAAG,mBAAmB,CAAA;KAAE,CAAC;IAC3C,QAAQ,EAAE,MAAM,CAAC;IAEjB;;OAEG;gBACS,IAAI,EAAE,MAAM;CAKzB;AAED,qBAAa,OAAQ,SAAQ,EAAE,CAAC,QAAQ;IACtC,OAAc,WAAW,SAAiB;IAG1C,SAAS,CAAC,EAAE,EAAE,gBAAgB,GAAG,IAAI,CAAQ;IAG7C,OAAO,CAAC,MAAM,CAAC,CAAoB;IACnC,OAAO,CAAC,MAAM,CAAC,CAAiB;IAChC,OAAO,CAAC,YAAY,CAAqB;IAEzC,OAAO,CAAC,UAAU,CAAc;IAChC,OAAO,CAAC,aAAa,CAAc;IAEnC,OAAO,CAAC,MAAM,CAA0B;IAExC,OAAO,CAAC,SAAS,CAAsB;IAEvC,OAAO,CAAC,UAAU,CAAa;IAC/B,OAAO,CAAC,QAAQ,CAAa;IAGtB,SAAS,EAAE,MAAM,CAAC;IAClB,SAAS,EAAE,MAAM,CAAC;IAClB,qBAAqB,EAAE,OAAO,CAAC;IAC/B,kBAAkB,EAAE,MAAM,CAAC;IAC3B,iBAAiB,EAAE,MAAM,CAAC;IAC1B,eAAe,EAAE,MAAM,CAAC;IAE/B,OAAO,CAAC,aAAa,CAAgB;IAErC,OAAO,CAAC,aAAa,CAAc;IAEnC,OAAO,CAAC,WAAW,CAAc;IAEjC,OAAO,KAAK,MAAM,GAAgE;;IAiB5E,IAAI,IAAI,OAAO,CAAC,IAAI,CAAC;IAmF3B,iBAAiB,CAAC,IAAI,EAAE,GAAG;IAmB3B;OACG;IACH,YAAY,IAAI,IAAI;IAuCpB,iBAAiB,CAAC,QAAQ,EAAE,EAAE,CAAC,QAAQ,GAAG,IAAI;IAyB9C,eAAe;IAiBf,SAAS,CAAC,aAAa,CAAC,aAAa,SAAM,GAAG,MAAM;IAOpD,SAAS,CAAC,UAAU;IAoFpB,MAAM,CAAC,MAAM,UAAO;CA8DrB"}