@databiosphere/findable-ui 36.0.0 → 37.1.0

package/.release-please-manifest.json

@@ -1,3 +1,3 @@
 {
-  ".": "36.0.0"
+  ".": "37.1.0"
 }

package/CHANGELOG.md

@@ -1,5 +1,24 @@
 # Changelog
 
+## [37.1.0](https://github.com/DataBiosphere/findable-ui/compare/v37.0.0...v37.1.0) (2025-06-19)
+
+
+### Features
+
+* hide global filtering search bar when global filters are disabled ([#547](https://github.com/DataBiosphere/findable-ui/issues/547)) ([#548](https://github.com/DataBiosphere/findable-ui/issues/548)) ([1a392ba](https://github.com/DataBiosphere/findable-ui/commit/1a392bac3707451404365989dc3187f59c181998))
+
+## [37.0.0](https://github.com/DataBiosphere/findable-ui/compare/v36.0.0...v37.0.0) (2025-06-19)
+
+
+### ⚠ BREAKING CHANGES
+
+* file format filter dropped from curl manifest request ([#543](https://github.com/DataBiosphere/findable-ui/issues/543)) (#544)
+
+### Bug Fixes
+
+* file format filter dropped from curl manifest request ([#543](https://github.com/DataBiosphere/findable-ui/issues/543)) ([#544](https://github.com/DataBiosphere/findable-ui/issues/544)) ([3169f5c](https://github.com/DataBiosphere/findable-ui/commit/3169f5ca961d1ca518b9820dc8878ad3d224a2f4))
+* refactor CodeCell to use node prop instead of value string ([#540](https://github.com/DataBiosphere/findable-ui/issues/540)) ([#542](https://github.com/DataBiosphere/findable-ui/issues/542)) ([28b7fb8](https://github.com/DataBiosphere/findable-ui/commit/28b7fb8e8646ede29098f6a612b66d3ccef34bf3))
+
 ## [36.0.0](https://github.com/DataBiosphere/findable-ui/compare/v35.2.0...v36.0.0) (2025-06-18)
 
 

package/lib/components/DataDictionary/components/Filters/components/ColumnFilters/columnFilters.d.ts

@@ -1,4 +1,4 @@
 import { RowData } from "@tanstack/react-table";
 import { Attribute } from "../../../../../../common/entities";
 import { ColumnFiltersProps } from "./types";
-export declare const ColumnFilters: <T extends RowData = Attribute>({ table, }: ColumnFiltersProps<T>) => JSX.Element;
+export declare const ColumnFilters: <T extends RowData = Attribute>({ table, }: ColumnFiltersProps<T>) => JSX.Element | null;

package/lib/components/DataDictionary/components/Filters/components/ColumnFilters/columnFilters.js

@@ -5,5 +5,8 @@ import { ColumnFilter } from "../../../../../Table/components/TableFeatures/Colu
 export const ColumnFilters = ({ table, }) => {
     const columns = table.getAllColumns();
     const columnFilters = columns.filter((column) => column.getCanFilter());
+    const enableColumnFilters = table.options.enableColumnFilters;
+    if (!enableColumnFilters)
+        return null;
     return (React.createElement(ButtonGroup, { ...BUTTON_GROUP_PROPS.SECONDARY_OUTLINED }, columnFilters.map((column) => (React.createElement(ColumnFilter, { key: column.id, column: column })))));
 };

package/lib/components/DataDictionary/components/Filters/stories/filters.stories.js

@@ -30,6 +30,7 @@ const DefaultStory = () => {
     const table = {
         getAllColumns: () => [DESCRIPTION, REQUIRED, BIONETWORK, EXAMPLE].map(makeColumn),
         getState: () => ({ globalFilter }),
+        options: { enableColumnFilters: true, enableGlobalFilter: true },
         setGlobalFilter,
     };
     return React.createElement(Filters, { table: table });

package/lib/components/Export/components/DownloadCurlCommand/downloadCurlCommand.d.ts

@@ -13,6 +13,7 @@ interface DownloadCurlCommandProps {
     filters: Filters;
     formFacet: FormFacet;
     manifestDownloadFormat?: ManifestDownloadFormat;
+    speciesFacetName: string;
 }
-export declare const DownloadCurlCommand: ({ DownloadCurlForm, DownloadCurlStart, DownloadCurlSuccess, fileManifestState, fileSummaryFacetName, filters, formFacet, manifestDownloadFormat, }: DownloadCurlCommandProps) => JSX.Element;
+export declare const DownloadCurlCommand: ({ DownloadCurlForm, DownloadCurlStart, DownloadCurlSuccess, fileManifestState, fileSummaryFacetName, filters, formFacet, manifestDownloadFormat, speciesFacetName, }: DownloadCurlCommandProps) => JSX.Element;
 export {};

package/lib/components/Export/components/DownloadCurlCommand/downloadCurlCommand.js

@@ -2,14 +2,16 @@ import React, { useState } from "react";
 import { MANIFEST_DOWNLOAD_FORMAT } from "../../../../apis/azul/common/entities";
 import { useExploreState } from "../../../../hooks/useExploreState";
 import { useFileManifest } from "../../../../hooks/useFileManifest/useFileManifest";
+import { useFileManifestFileCount } from "../../../../hooks/useFileManifest/useFileManifestFileCount";
 import { useRequestFileLocation, } from "../../../../hooks/useRequestFileLocation";
 import { useRequestManifest } from "../../../../hooks/useRequestManifest/useRequestManifest";
 import { BULK_DOWNLOAD_EXECUTION_ENVIRONMENT, } from "../../common/entities";
 import { trackBulkDownloadRequested } from "../../common/tracking";
 import { DownloadCurlCommandNotStarted } from "./components/DownloadCurlCommandNotStarted/downloadCurlCommandNotStarted";
 import { DownloadCurlCommandReady } from "./components/DownloadCurlCommandReady/downloadCurlCommandReady";
-export const DownloadCurlCommand = ({ DownloadCurlForm, DownloadCurlStart, DownloadCurlSuccess, fileManifestState, fileSummaryFacetName, filters, formFacet, manifestDownloadFormat = MANIFEST_DOWNLOAD_FORMAT.CURL, }) => {
+export const DownloadCurlCommand = ({ DownloadCurlForm, DownloadCurlStart, DownloadCurlSuccess, fileManifestState, fileSummaryFacetName, filters, formFacet, manifestDownloadFormat = MANIFEST_DOWNLOAD_FORMAT.CURL, speciesFacetName, }) => {
     useFileManifest(filters, fileSummaryFacetName);
+    useFileManifestFileCount(filters, speciesFacetName, fileSummaryFacetName);
     const [executionEnvironment, setExecutionEnvironment] = useState(BULK_DOWNLOAD_EXECUTION_ENVIRONMENT.BASH);
     const { exploreState: { tabValue: entityList }, } = useExploreState();
     const { requestMethod, requestUrl } = useRequestManifest(manifestDownloadFormat, formFacet);

package/lib/components/Export/components/ExportToTerra/exportToTerra.d.ts

@@ -14,5 +14,6 @@ export interface ExportToTerraProps {
     formFacet: FormFacet;
     manifestDownloadFormat?: ManifestDownloadFormat;
     manifestDownloadFormats: ManifestDownloadFormat[];
+    speciesFacetName: string;
 }
-export declare const ExportToTerra: ({ ExportForm, ExportToTerraStart, ExportToTerraSuccess, fileManifestState, fileSummaryFacetName, filters, formFacet, manifestDownloadFormat, manifestDownloadFormats, }: ExportToTerraProps) => JSX.Element;
+export declare const ExportToTerra: ({ ExportForm, ExportToTerraStart, ExportToTerraSuccess, fileManifestState, fileSummaryFacetName, filters, formFacet, manifestDownloadFormat, manifestDownloadFormats, speciesFacetName, }: ExportToTerraProps) => JSX.Element;

package/lib/components/Export/components/ExportToTerra/exportToTerra.js

@@ -2,15 +2,17 @@ import React from "react";
 import { useExploreState } from "../../../../hooks/useExploreState";
 import { useExportToTerraResponseURL } from "../../../../hooks/useExportToTerraResponseURL";
 import { useFileManifest } from "../../../../hooks/useFileManifest/useFileManifest";
+import { useFileManifestFileCount } from "../../../../hooks/useFileManifest/useFileManifestFileCount";
 import { useFileManifestFormat } from "../../../../hooks/useFileManifest/useFileManifestFormat";
 import { useRequestFileLocation } from "../../../../hooks/useRequestFileLocation";
 import { useRequestManifest } from "../../../../hooks/useRequestManifest/useRequestManifest";
 import { trackExportToTerraRequested } from "../../common/tracking";
 import { ExportToTerraNotStarted } from "./components/ExportToTerraNotStarted/exportToTerraNotStarted";
 import { ExportToTerraReady } from "./components/ExportToTerraReady/exportToTerraReady";
-export const ExportToTerra = ({ ExportForm, ExportToTerraStart, ExportToTerraSuccess, fileManifestState, fileSummaryFacetName, filters, formFacet, manifestDownloadFormat, manifestDownloadFormats, }) => {
+export const ExportToTerra = ({ ExportForm, ExportToTerraStart, ExportToTerraSuccess, fileManifestState, fileSummaryFacetName, filters, formFacet, manifestDownloadFormat, manifestDownloadFormats, speciesFacetName, }) => {
     const { exploreState: { tabValue: entityList }, } = useExploreState();
     useFileManifest(filters, fileSummaryFacetName);
+    useFileManifestFileCount(filters, speciesFacetName, fileSummaryFacetName);
     const fileManifestFormatState = useFileManifestFormat(manifestDownloadFormat);
     const { requestMethod, requestParams, requestUrl } = useRequestManifest(fileManifestFormatState.fileManifestFormat, formFacet);
     const { data, isLoading, run } = useRequestFileLocation(requestUrl, requestMethod);

package/lib/components/Export/components/ManifestDownload/manifestDownload.d.ts

@@ -13,5 +13,6 @@ export interface ManifestDownloadProps {
     manifestDownloadFormat?: ManifestDownloadFormat;
     ManifestDownloadStart: ElementType;
     ManifestDownloadSuccess: ElementType;
+    speciesFacetName: string;
 }
-export declare const ManifestDownload: ({ fileManifestState, fileSummaryFacetName, filters, formFacet, ManifestDownloadForm, manifestDownloadFormat, ManifestDownloadStart, ManifestDownloadSuccess, }: ManifestDownloadProps) => JSX.Element;
+export declare const ManifestDownload: ({ fileManifestState, fileSummaryFacetName, filters, formFacet, ManifestDownloadForm, manifestDownloadFormat, ManifestDownloadStart, ManifestDownloadSuccess, speciesFacetName, }: ManifestDownloadProps) => JSX.Element;

package/lib/components/Export/components/ManifestDownload/manifestDownload.js

@@ -2,13 +2,15 @@ import React from "react";
 import { MANIFEST_DOWNLOAD_FORMAT } from "../../../../apis/azul/common/entities";
 import { useExploreState } from "../../../../hooks/useExploreState";
 import { useFileManifest } from "../../../../hooks/useFileManifest/useFileManifest";
+import { useFileManifestFileCount } from "../../../../hooks/useFileManifest/useFileManifestFileCount";
 import { useRequestFileLocation, } from "../../../../hooks/useRequestFileLocation";
 import { useRequestManifest } from "../../../../hooks/useRequestManifest/useRequestManifest";
 import { trackFileManifestRequested } from "../../common/tracking";
 import { ManifestDownloadNotStarted } from "./components/ManifestDownloadNotStarted/manifestDownloadNotStarted";
 import { ManifestDownloadReady } from "./components/ManifestDownloadReady/manifestDownloadReady";
-export const ManifestDownload = ({ fileManifestState, fileSummaryFacetName, filters, formFacet, ManifestDownloadForm, manifestDownloadFormat = MANIFEST_DOWNLOAD_FORMAT.COMPACT, ManifestDownloadStart, ManifestDownloadSuccess, }) => {
+export const ManifestDownload = ({ fileManifestState, fileSummaryFacetName, filters, formFacet, ManifestDownloadForm, manifestDownloadFormat = MANIFEST_DOWNLOAD_FORMAT.COMPACT, ManifestDownloadStart, ManifestDownloadSuccess, speciesFacetName, }) => {
     useFileManifest(filters, fileSummaryFacetName);
+    useFileManifestFileCount(filters, speciesFacetName, fileSummaryFacetName);
     const { exploreState: { tabValue: entityList }, } = useExploreState();
     const { requestMethod, requestUrl } = useRequestManifest(manifestDownloadFormat, formFacet);
     const { data, isLoading, run } = useRequestFileLocation(requestUrl, requestMethod);

package/lib/components/Table/components/TableCell/components/CodeCell/codeCell.d.ts

@@ -1,3 +1,4 @@
 import { CellContext, RowData } from "@tanstack/react-table";
+import { ReactNode } from "react";
 import { BaseComponentProps } from "../../../../../types";
-export declare const CodeCell: <T extends RowData, TValue extends string = string>({ className, getValue, }: BaseComponentProps & CellContext<T, TValue>) => JSX.Element | null;
+export declare const CodeCell: <T extends RowData, TValue extends ReactNode = ReactNode>({ className, getValue, }: BaseComponentProps & CellContext<T, TValue>) => JSX.Element | null;

package/lib/components/Table/components/TableFeatures/GlobalFilter/globalFilter.d.ts

@@ -1,3 +1,3 @@
 import { RowData } from "@tanstack/react-table";
 import { GlobalFilterProps } from "./types";
-export declare const GlobalFilter: <T extends RowData>({ className, table, ...props }: GlobalFilterProps<T>) => JSX.Element;
+export declare const GlobalFilter: <T extends RowData>({ className, table, ...props }: GlobalFilterProps<T>) => JSX.Element | null;

package/lib/components/Table/components/TableFeatures/GlobalFilter/globalFilter.js

@@ -4,7 +4,10 @@ import { SearchInputAdornment } from "../../../../common/OutlinedInput/component
 import { StyledOutlinedInput } from "../../../../common/OutlinedInput/outlinedInput.styles";
 import { OUTLINED_INPUT_PROPS } from "./constants";
 export const GlobalFilter = ({ className, table, ...props /* MuiOutlinedInputProps */ }) => {
-    const { getState, setGlobalFilter } = table;
+    const { getState, options, setGlobalFilter } = table;
     const { globalFilter } = getState();
+    const { enableGlobalFilter } = options;
+    if (!enableGlobalFilter)
+        return null;
     return (React.createElement(StyledOutlinedInput, { ...OUTLINED_INPUT_PROPS, className: className, endAdornment: React.createElement(ClearInputAdornment, { in: !!globalFilter, onClick: () => setGlobalFilter(undefined) }), hasValue: !!globalFilter, onChange: (e) => setGlobalFilter(e.target.value), startAdornment: React.createElement(SearchInputAdornment, null), value: globalFilter ?? "", ...props }));
 };

package/lib/hooks/useFileManifest/useFileManifestFileCount.d.ts

@@ -0,0 +1,10 @@
+import { Filters } from "../../common/entities";
+/**
+ * Fetches the latest file count from the summary endpoint, excluding filters
+ * that match the provided species and file facet names, and updates the file manifest state.
+ *
+ * @param initialFilters - The initial set of filters to apply.
+ * @param speciesFacetName - The facet name representing species to exclude from the summary request.
+ * @param fileFacetName - The facet name representing file type to exclude from the summary request.
+ */
+export declare const useFileManifestFileCount: (initialFilters: Filters | undefined, speciesFacetName: string, fileFacetName: string) => void;

package/lib/hooks/useFileManifest/useFileManifestFileCount.js

@@ -0,0 +1,44 @@
+import { useEffect, useState } from "react";
+import { FileManifestActionKind } from "../../providers/fileManifestState";
+import { useCatalog } from "../useCatalog";
+import { useFileManifestState } from "../useFileManifestState";
+import { useFetchSummary } from "./useFetchSummary";
+/**
+ * Fetches the latest file count from the summary endpoint, excluding filters
+ * that match the provided species and file facet names, and updates the file manifest state.
+ *
+ * @param initialFilters - The initial set of filters to apply.
+ * @param speciesFacetName - The facet name representing species to exclude from the summary request.
+ * @param fileFacetName - The facet name representing file type to exclude from the summary request.
+ */
+export const useFileManifestFileCount = (initialFilters, speciesFacetName, fileFacetName) => {
+    // Initial file manifest filter.
+    const [initFilters] = useState(() => initialFilters);
+    // File manifest dispatch.
+    const { fileManifestDispatch } = useFileManifestState();
+    // Determine catalog.
+    const catalog = useCatalog(); // catalog should be defined.
+    // Get filters required for fetching the summary.
+    const filters = excludeFacetsFromFilters(initFilters, [
+        speciesFacetName,
+        fileFacetName,
+    ]);
+    // Fetch file count from summary.
+    const { summary: { fileCount } = {} } = useFetchSummary(filters, catalog, true);
+    useEffect(() => {
+        fileManifestDispatch({
+            payload: { fileCount },
+            type: FileManifestActionKind.UpdateFileCount,
+        });
+    }, [fileCount, fileManifestDispatch]);
+};
+/**
+ * Returns a new filters array with the specified facet names excluded.
+ *
+ * @param filters - The list of filters to process.
+ * @param facetNames - The facet names to exclude from the filters.
+ * @returns The filters array excluding any filters matching the provided facet names.
+ */
+function excludeFacetsFromFilters(filters, facetNames) {
+    return (filters || []).filter(({ categoryKey }) => !facetNames.includes(categoryKey));
+}

package/lib/hooks/useRequestManifest/utils.d.ts

@@ -4,18 +4,21 @@ import { FormFacet } from "../../components/Export/common/entities";
 import { FileManifestState } from "../../providers/fileManifestState";
 import { UseRequestManifest } from "./types";
 /**
- * Returns true if all form facets have all their terms selected.
- * @param formFacet - Form related file facets.
- * @returns true if all form facets have all their terms selected.
+ * Determines whether all files are selected by comparing the file count to the summary file count.
+ *
+ * @param state - The file manifest state object.
+ * @returns True if all files are selected; otherwise, false.
  */
-export declare function areAllFormFilterTermsSelected(formFacet: FormFacet): boolean;
+export declare function areAllFilesSelected(state: FileManifestState): boolean;
 /**
- * Generates the filters for a request URL based on the file manifest state.
- * - **all form facets have all their terms selected** - returns filters from state without form filters.
- * - **at least one form facet has an unselected term** - returns filters from state.
- * @param state - File manifest state.
- * @param formFacet - Form related file facets.
- * @returns filters for the request URL.
+ * Builds the filters object for a request URL based on the file manifest state and form facets.
+ *
+ * - If all files are selected, returns filters from state excluding fully selected form filters.
+ * - If only some files are selected, returns the current filters from state.
+ *
+ * @param state - The file manifest state object.
+ * @param formFacet - The form-related file facets.
+ * @returns The filters to use for the request URL.
  */
 export declare function buildRequestFilters(state: FileManifestState, formFacet: FormFacet): Filters;
 /**
@@ -42,11 +45,15 @@ export declare function excludeFullySelectedFormFilters(state: FileManifestState
  */
 export declare function isCatalogReady(catalog: string | undefined): boolean;
 /**
- * Returns true if the file manifest state is ready for a request.
- * A file manifest state is considered ready if it is both enabled (`isEnabled` is `true`)
- * and not currently loading (`isLoading` is `false`).
+ * Determines if the file manifest state is ready to be used in a request.
+ *
+ * The state is considered ready when:
+ * - isEnabled is true
+ * - fileCount is defined
+ * - isLoading is false
+ *
  * @param fileManifestState - File manifest state.
- * @returns true if the file manifest state is ready for a request.
+ * @returns true if the file manifest state is ready.
  */
 export declare function isFileManifestStateReady(fileManifestState: FileManifestState): boolean;
 /**

package/lib/hooks/useRequestManifest/utils.js

@@ -2,29 +2,35 @@ import { AZUL_PARAM, MANIFEST_DOWNLOAD_FORMAT, } from "../../apis/azul/common/en
 import { transformFilters } from "../../apis/azul/common/filterTransformer";
 import { REQUEST_MANIFEST } from "./constants";
 /**
- * Returns true if all form facets have all their terms selected.
- * @param formFacet - Form related file facets.
- * @returns true if all form facets have all their terms selected.
+ * Determines whether all files are selected by comparing the file count to the summary file count.
+ *
+ * @param state - The file manifest state object.
+ * @returns True if all files are selected; otherwise, false.
  */
-export function areAllFormFilterTermsSelected(formFacet) {
-    return Object.values(formFacet)
-        .filter(Boolean)
-        .every(({ selectedTermCount, termCount }) => selectedTermCount === termCount);
+export function areAllFilesSelected(state) {
+    const { fileCount, summary } = state;
+    // Return false if file count or summary file count is undefined.
+    if (fileCount === undefined || summary?.fileCount === undefined)
+        return false;
+    // Return true if file count equals summary file count.
+    return fileCount === summary.fileCount;
 }
 /**
- * Generates the filters for a request URL based on the file manifest state.
- * - **all form facets have all their terms selected** - returns filters from state without form filters.
- * - **at least one form facet has an unselected term** - returns filters from state.
- * @param state - File manifest state.
- * @param formFacet - Form related file facets.
- * @returns filters for the request URL.
+ * Builds the filters object for a request URL based on the file manifest state and form facets.
+ *
+ * - If all files are selected, returns filters from state excluding fully selected form filters.
+ * - If only some files are selected, returns the current filters from state.
+ *
+ * @param state - The file manifest state object.
+ * @param formFacet - The form-related file facets.
+ * @returns The filters to use for the request URL.
  */
 export function buildRequestFilters(state, formFacet) {
-    // Form terms are fully selected; return filters excluding form filters.
-    if (areAllFormFilterTermsSelected(formFacet)) {
+    // Return filters from state excluding form filters if all files are selected.
+    if (areAllFilesSelected(state)) {
         return excludeFullySelectedFormFilters(state, formFacet);
     }
-    // Form terms are partially selected; return filters.
+    // Return current filters from state.
     return state.filters;
 }
 /**
@@ -84,14 +90,20 @@ export function isCatalogReady(catalog) {
     return typeof catalog === "string";
 }
 /**
- * Returns true if the file manifest state is ready for a request.
- * A file manifest state is considered ready if it is both enabled (`isEnabled` is `true`)
- * and not currently loading (`isLoading` is `false`).
+ * Determines if the file manifest state is ready to be used in a request.
+ *
+ * The state is considered ready when:
+ * - isEnabled is true
+ * - fileCount is defined
+ * - isLoading is false
+ *
  * @param fileManifestState - File manifest state.
- * @returns true if the file manifest state is ready for a request.
+ * @returns true if the file manifest state is ready.
  */
 export function isFileManifestStateReady(fileManifestState) {
-    return fileManifestState.isEnabled && !fileManifestState.isLoading;
+    return (fileManifestState.isEnabled &&
+        fileManifestState.fileCount !== undefined &&
+        !fileManifestState.isLoading);
 }
 /**
  * Checks if the file manifest format is ready for use.

package/lib/mocks/useRequestFileManifest.mocks.js

@@ -59,9 +59,11 @@ export const FILTERS = {
     FORM_SUBSET: [FILTER_FILES_SUBSET, FILTER_OTHER, FILTER_SPECIES],
 };
 export const FILE_MANIFEST_STATE = {
+    fileCount: 10,
     filters: FILTERS.FORM_INITIAL_SET,
     isEnabled: true,
     isLoading: false,
+    summary: { fileCount: 10 },
 };
 export const FORM_FACET = {
     COMPLETE_SET: {

package/lib/providers/fileManifestState/constants.js

@@ -1,4 +1,5 @@
 export const FILE_MANIFEST_STATE = {
+    fileCount: undefined,
     fileSummary: undefined,
     fileSummaryFacetName: undefined,
     fileSummaryFilters: [],

package/lib/providers/fileManifestState.d.ts

@@ -6,6 +6,7 @@ import { FileFacet } from "../hooks/useFileManifest/common/entities";
  * File manifest state.
  */
 export type FileManifestState = {
+    fileCount: number | undefined;
     filesFacets: FileFacet[];
     fileSummary?: AzulSummaryResponse;
     fileSummaryFacetName?: string;
@@ -37,6 +38,7 @@ export declare function FileManifestStateProvider({ children, }: FileManifestSta
 export declare enum FileManifestActionKind {
     ClearFileManifest = "CLEAR_FILE_MANIFEST",
     FetchFileManifest = "FETCH_FILE_MANIFEST",
+    UpdateFileCount = "UPDATE_FILE_COUNT",
     UpdateFileManifest = "UPDATE_FILE_MANIFEST",
     UpdateFilter = "UPDATE_FILTER",
     UpdateFiltersCategory = "UPDATE_FILTERS_CATEGORY"
@@ -44,7 +46,7 @@ export declare enum FileManifestActionKind {
 /**
  * File manifest action.
  */
-export type FileManifestAction = ClearFileManifestAction | FetchFileManifestAction | UpdateFileManifestAction | UpdateFilterAction | UpdateFiltersCategoryAction;
+export type FileManifestAction = ClearFileManifestAction | FetchFileManifestAction | UpdateFileCountAction | UpdateFileManifestAction | UpdateFilterAction | UpdateFiltersCategoryAction;
 /**
  * Resets file manifest state.
  */
@@ -66,6 +68,13 @@ type UpdateFileManifestAction = {
     payload: UpdateFileManifestPayload;
     type: FileManifestActionKind.UpdateFileManifest;
 };
+/**
+ * Update file count action.
+ */
+type UpdateFileCountAction = {
+    payload: UpdateFileCountPayload;
+    type: FileManifestActionKind.UpdateFileCount;
+};
 /**
  * Update filter action.
  */
@@ -87,6 +96,12 @@ type FetchFileManifestPayload = {
     fileSummaryFacetName?: string;
     filters: Filters;
 };
+/**
+ * Update file count payload.
+ */
+export type UpdateFileCountPayload = {
+    fileCount: number | undefined;
+};
 /**
  * Update file manifest payload.
  */

package/lib/providers/fileManifestState.js

@@ -58,6 +58,7 @@ export var FileManifestActionKind;
 (function (FileManifestActionKind) {
     FileManifestActionKind["ClearFileManifest"] = "CLEAR_FILE_MANIFEST";
     FileManifestActionKind["FetchFileManifest"] = "FETCH_FILE_MANIFEST";
+    FileManifestActionKind["UpdateFileCount"] = "UPDATE_FILE_COUNT";
     FileManifestActionKind["UpdateFileManifest"] = "UPDATE_FILE_MANIFEST";
     FileManifestActionKind["UpdateFilter"] = "UPDATE_FILTER";
     FileManifestActionKind["UpdateFiltersCategory"] = "UPDATE_FILTERS_CATEGORY";
@@ -75,6 +76,7 @@ function fileManifestReducer(state, action) {
         case FileManifestActionKind.ClearFileManifest: {
             return {
                 ...state,
+                fileCount: undefined,
                 isEnabled: false,
             };
         }
@@ -89,6 +91,10 @@ function fileManifestReducer(state, action) {
                 isEnabled: true,
             };
         }
+        // Updates file count.
+        case FileManifestActionKind.UpdateFileCount: {
+            return { ...state, ...payload };
+        }
         // Updates file manifest.
         case FileManifestActionKind.UpdateFileManifest: {
             return { ...state, ...payload };

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@databiosphere/findable-ui",
-  "version": "36.0.0",
+  "version": "37.1.0",
   "description": "",
   "scripts": {
     "test": "node --experimental-vm-modules node_modules/jest/bin/jest.js",

package/src/components/DataDictionary/components/Filters/components/ColumnFilters/columnFilters.tsx

@@ -8,9 +8,13 @@ import { ColumnFiltersProps } from "./types";
 
 export const ColumnFilters = <T extends RowData = Attribute>({
   table,
-}: ColumnFiltersProps<T>): JSX.Element => {
+}: ColumnFiltersProps<T>): JSX.Element | null => {
   const columns = table.getAllColumns();
   const columnFilters = columns.filter((column) => column.getCanFilter());
+  const enableColumnFilters = table.options.enableColumnFilters;
+
+  if (!enableColumnFilters) return null;
+
   return (
     <ButtonGroup {...BUTTON_GROUP_PROPS.SECONDARY_OUTLINED}>
       {columnFilters.map((column) => (

package/src/components/DataDictionary/components/Filters/stories/filters.stories.tsx

@@ -43,6 +43,7 @@ const DefaultStory = (): JSX.Element => {
     getAllColumns: () =>
       [DESCRIPTION, REQUIRED, BIONETWORK, EXAMPLE].map(makeColumn),
     getState: () => ({ globalFilter }),
+    options: { enableColumnFilters: true, enableGlobalFilter: true },
     setGlobalFilter,
   } as Table<unknown>;
 

package/src/components/Export/components/DownloadCurlCommand/downloadCurlCommand.tsx

@@ -4,6 +4,7 @@ import { Filters } from "../../../../common/entities";
 import { useExploreState } from "../../../../hooks/useExploreState";
 import { FileManifestType } from "../../../../hooks/useFileManifest/common/entities";
 import { useFileManifest } from "../../../../hooks/useFileManifest/useFileManifest";
+import { useFileManifestFileCount } from "../../../../hooks/useFileManifest/useFileManifestFileCount";
 import {
   FileLocation,
   useRequestFileLocation,
@@ -30,6 +31,7 @@ interface DownloadCurlCommandProps {
   filters: Filters; // Initializes bulk download filters.
   formFacet: FormFacet;
   manifestDownloadFormat?: ManifestDownloadFormat;
+  speciesFacetName: string;
 }
 
 export const DownloadCurlCommand = ({
@@ -41,8 +43,10 @@ export const DownloadCurlCommand = ({
   filters,
   formFacet,
   manifestDownloadFormat = MANIFEST_DOWNLOAD_FORMAT.CURL,
+  speciesFacetName,
 }: DownloadCurlCommandProps): JSX.Element => {
   useFileManifest(filters, fileSummaryFacetName);
+  useFileManifestFileCount(filters, speciesFacetName, fileSummaryFacetName);
   const [executionEnvironment, setExecutionEnvironment] =
     useState<ExecutionEnvironment>(BULK_DOWNLOAD_EXECUTION_ENVIRONMENT.BASH);
   const {

package/src/components/Export/components/ExportToTerra/exportToTerra.tsx

@@ -4,6 +4,7 @@ import { useExploreState } from "../../../../hooks/useExploreState";
 import { useExportToTerraResponseURL } from "../../../../hooks/useExportToTerraResponseURL";
 import { FileManifestType } from "../../../../hooks/useFileManifest/common/entities";
 import { useFileManifest } from "../../../../hooks/useFileManifest/useFileManifest";
+import { useFileManifestFileCount } from "../../../../hooks/useFileManifest/useFileManifestFileCount";
 import { useFileManifestFormat } from "../../../../hooks/useFileManifest/useFileManifestFormat";
 import { useRequestFileLocation } from "../../../../hooks/useRequestFileLocation";
 import { useRequestManifest } from "../../../../hooks/useRequestManifest/useRequestManifest";
@@ -24,6 +25,7 @@ export interface ExportToTerraProps {
   formFacet: FormFacet;
   manifestDownloadFormat?: ManifestDownloadFormat;
   manifestDownloadFormats: ManifestDownloadFormat[];
+  speciesFacetName: string;
 }
 
 export const ExportToTerra = ({
@@ -36,11 +38,13 @@ export const ExportToTerra = ({
   formFacet,
   manifestDownloadFormat,
   manifestDownloadFormats,
+  speciesFacetName,
 }: ExportToTerraProps): JSX.Element => {
   const {
     exploreState: { tabValue: entityList },
   } = useExploreState();
   useFileManifest(filters, fileSummaryFacetName);
+  useFileManifestFileCount(filters, speciesFacetName, fileSummaryFacetName);
   const fileManifestFormatState = useFileManifestFormat(manifestDownloadFormat);
   const { requestMethod, requestParams, requestUrl } = useRequestManifest(
     fileManifestFormatState.fileManifestFormat,

package/src/components/Export/components/ManifestDownload/manifestDownload.tsx

@@ -4,6 +4,7 @@ import { Filters } from "../../../../common/entities";
 import { useExploreState } from "../../../../hooks/useExploreState";
 import { FileManifestType } from "../../../../hooks/useFileManifest/common/entities";
 import { useFileManifest } from "../../../../hooks/useFileManifest/useFileManifest";
+import { useFileManifestFileCount } from "../../../../hooks/useFileManifest/useFileManifestFileCount";
 import {
   FileLocation,
   useRequestFileLocation,
@@ -25,6 +26,7 @@ export interface ManifestDownloadProps {
   manifestDownloadFormat?: ManifestDownloadFormat;
   ManifestDownloadStart: ElementType;
   ManifestDownloadSuccess: ElementType;
+  speciesFacetName: string;
 }
 
 export const ManifestDownload = ({
@@ -36,8 +38,10 @@ export const ManifestDownload = ({
   manifestDownloadFormat = MANIFEST_DOWNLOAD_FORMAT.COMPACT,
   ManifestDownloadStart,
   ManifestDownloadSuccess,
+  speciesFacetName,
 }: ManifestDownloadProps): JSX.Element => {
   useFileManifest(filters, fileSummaryFacetName);
+  useFileManifestFileCount(filters, speciesFacetName, fileSummaryFacetName);
   const {
     exploreState: { tabValue: entityList },
   } = useExploreState();

package/src/components/Table/components/TableCell/components/CodeCell/codeCell.tsx

@@ -1,10 +1,13 @@
 import { CellContext, RowData } from "@tanstack/react-table";
-import React from "react";
+import React, { ReactNode } from "react";
 import { CHIP_PROPS } from "../../../../../../styles/common/mui/chip";
 import { BaseComponentProps } from "../../../../../types";
 import { StyledChip } from "./codeCell.styles";
 
-export const CodeCell = <T extends RowData, TValue extends string = string>({
+export const CodeCell = <
+  T extends RowData,
+  TValue extends ReactNode = ReactNode
+>({
   className,
   getValue,
 }: BaseComponentProps & CellContext<T, TValue>): JSX.Element | null => {

package/src/components/Table/components/TableFeatures/GlobalFilter/globalFilter.tsx

@@ -10,9 +10,13 @@ export const GlobalFilter = <T extends RowData>({
   className,
   table,
   ...props /* MuiOutlinedInputProps */
-}: GlobalFilterProps<T>): JSX.Element => {
-  const { getState, setGlobalFilter } = table;
+}: GlobalFilterProps<T>): JSX.Element | null => {
+  const { getState, options, setGlobalFilter } = table;
   const { globalFilter } = getState();
+  const { enableGlobalFilter } = options;
+
+  if (!enableGlobalFilter) return null;
+
   return (
     <StyledOutlinedInput
       {...OUTLINED_INPUT_PROPS}

package/src/hooks/useFileManifest/useFileManifestFileCount.ts

@@ -0,0 +1,65 @@
+import { useEffect, useState } from "react";
+import { Filters } from "../../common/entities";
+import { FileManifestActionKind } from "../../providers/fileManifestState";
+import { useCatalog } from "../useCatalog";
+import { useFileManifestState } from "../useFileManifestState";
+import { useFetchSummary } from "./useFetchSummary";
+
+/**
+ * Fetches the latest file count from the summary endpoint, excluding filters
+ * that match the provided species and file facet names, and updates the file manifest state.
+ *
+ * @param initialFilters - The initial set of filters to apply.
+ * @param speciesFacetName - The facet name representing species to exclude from the summary request.
+ * @param fileFacetName - The facet name representing file type to exclude from the summary request.
+ */
+export const useFileManifestFileCount = (
+  initialFilters: Filters | undefined,
+  speciesFacetName: string,
+  fileFacetName: string
+): void => {
+  // Initial file manifest filter.
+  const [initFilters] = useState(() => initialFilters);
+
+  // File manifest dispatch.
+  const { fileManifestDispatch } = useFileManifestState();
+
+  // Determine catalog.
+  const catalog = useCatalog() as string; // catalog should be defined.
+
+  // Get filters required for fetching the summary.
+  const filters = excludeFacetsFromFilters(initFilters, [
+    speciesFacetName,
+    fileFacetName,
+  ]);
+
+  // Fetch file count from summary.
+  const { summary: { fileCount } = {} } = useFetchSummary(
+    filters,
+    catalog,
+    true
+  );
+
+  useEffect(() => {
+    fileManifestDispatch({
+      payload: { fileCount },
+      type: FileManifestActionKind.UpdateFileCount,
+    });
+  }, [fileCount, fileManifestDispatch]);
+};
+
+/**
+ * Returns a new filters array with the specified facet names excluded.
+ *
+ * @param filters - The list of filters to process.
+ * @param facetNames - The facet names to exclude from the filters.
+ * @returns The filters array excluding any filters matching the provided facet names.
+ */
+function excludeFacetsFromFilters(
+  filters: Filters | undefined,
+  facetNames: string[]
+): Filters {
+  return (filters || []).filter(
+    ({ categoryKey }) => !facetNames.includes(categoryKey)
+  );
+}

package/src/hooks/useRequestManifest/utils.ts

@@ -12,36 +12,41 @@ import { REQUEST_MANIFEST } from "./constants";
 import { UseRequestManifest } from "./types";
 
 /**
- * Returns true if all form facets have all their terms selected.
- * @param formFacet - Form related file facets.
- * @returns true if all form facets have all their terms selected.
+ * Determines whether all files are selected by comparing the file count to the summary file count.
+ *
+ * @param state - The file manifest state object.
+ * @returns True if all files are selected; otherwise, false.
  */
-export function areAllFormFilterTermsSelected(formFacet: FormFacet): boolean {
-  return Object.values(formFacet)
-    .filter(Boolean)
-    .every(
-      ({ selectedTermCount, termCount }: FileFacet) =>
-        selectedTermCount === termCount
-    );
+export function areAllFilesSelected(state: FileManifestState): boolean {
+  const { fileCount, summary } = state;
+
+  // Return false if file count or summary file count is undefined.
+  if (fileCount === undefined || summary?.fileCount === undefined) return false;
+
+  // Return true if file count equals summary file count.
+  return fileCount === summary.fileCount;
 }
 
 /**
- * Generates the filters for a request URL based on the file manifest state.
- * - **all form facets have all their terms selected** - returns filters from state without form filters.
- * - **at least one form facet has an unselected term** - returns filters from state.
- * @param state - File manifest state.
- * @param formFacet - Form related file facets.
- * @returns filters for the request URL.
+ * Builds the filters object for a request URL based on the file manifest state and form facets.
+ *
+ * - If all files are selected, returns filters from state excluding fully selected form filters.
+ * - If only some files are selected, returns the current filters from state.
+ *
+ * @param state - The file manifest state object.
+ * @param formFacet - The form-related file facets.
+ * @returns The filters to use for the request URL.
  */
 export function buildRequestFilters(
   state: FileManifestState,
   formFacet: FormFacet
 ): Filters {
-  // Form terms are fully selected; return filters excluding form filters.
-  if (areAllFormFilterTermsSelected(formFacet)) {
+  // Return filters from state excluding form filters if all files are selected.
+  if (areAllFilesSelected(state)) {
     return excludeFullySelectedFormFilters(state, formFacet);
   }
-  // Form terms are partially selected; return filters.
+
+  // Return current filters from state.
   return state.filters;
 }
 
@@ -115,16 +120,24 @@ export function isCatalogReady(catalog: string | undefined): boolean {
 }
 
 /**
- * Returns true if the file manifest state is ready for a request.
- * A file manifest state is considered ready if it is both enabled (`isEnabled` is `true`)
- * and not currently loading (`isLoading` is `false`).
+ * Determines if the file manifest state is ready to be used in a request.
+ *
+ * The state is considered ready when:
+ * - isEnabled is true
+ * - fileCount is defined
+ * - isLoading is false
+ *
  * @param fileManifestState - File manifest state.
- * @returns true if the file manifest state is ready for a request.
+ * @returns true if the file manifest state is ready.
  */
 export function isFileManifestStateReady(
   fileManifestState: FileManifestState
 ): boolean {
-  return fileManifestState.isEnabled && !fileManifestState.isLoading;
+  return (
+    fileManifestState.isEnabled &&
+    fileManifestState.fileCount !== undefined &&
+    !fileManifestState.isLoading
+  );
 }
 
 /**

package/src/mocks/useRequestFileManifest.mocks.ts

@@ -79,9 +79,11 @@ export const FILTERS: Record<string, Filters> = {
 };
 
 export const FILE_MANIFEST_STATE = {
+  fileCount: 10,
   filters: FILTERS.FORM_INITIAL_SET,
   isEnabled: true,
   isLoading: false,
+  summary: { fileCount: 10 },
 } as FileManifestState;
 
 export const FORM_FACET: Record<string, FormFacet> = {

package/src/providers/fileManifestState/constants.ts

@@ -1,6 +1,7 @@
 import { FileManifestState } from "../fileManifestState";
 
 export const FILE_MANIFEST_STATE: FileManifestState = {
+  fileCount: undefined,
   fileSummary: undefined,
   fileSummaryFacetName: undefined,
   fileSummaryFilters: [],

package/src/providers/fileManifestState.tsx

@@ -24,6 +24,7 @@ import { FILE_MANIFEST_STATE } from "./fileManifestState/constants";
  * File manifest state.
  */
 export type FileManifestState = {
+  fileCount: number | undefined;
   filesFacets: FileFacet[];
   fileSummary?: AzulSummaryResponse;
   fileSummaryFacetName?: string;
@@ -133,6 +134,7 @@ export function FileManifestStateProvider({
 export enum FileManifestActionKind {
   ClearFileManifest = "CLEAR_FILE_MANIFEST",
   FetchFileManifest = "FETCH_FILE_MANIFEST",
+  UpdateFileCount = "UPDATE_FILE_COUNT",
   UpdateFileManifest = "UPDATE_FILE_MANIFEST",
   UpdateFilter = "UPDATE_FILTER",
   UpdateFiltersCategory = "UPDATE_FILTERS_CATEGORY",
@@ -144,6 +146,7 @@ export enum FileManifestActionKind {
 export type FileManifestAction =
   | ClearFileManifestAction
   | FetchFileManifestAction
+  | UpdateFileCountAction
   | UpdateFileManifestAction
   | UpdateFilterAction
   | UpdateFiltersCategoryAction;
@@ -172,6 +175,14 @@ type UpdateFileManifestAction = {
   type: FileManifestActionKind.UpdateFileManifest;
 };
 
+/**
+ * Update file count action.
+ */
+type UpdateFileCountAction = {
+  payload: UpdateFileCountPayload;
+  type: FileManifestActionKind.UpdateFileCount;
+};
+
 /**
  * Update filter action.
  */
@@ -196,6 +207,13 @@ type FetchFileManifestPayload = {
   filters: Filters;
 };
 
+/**
+ * Update file count payload.
+ */
+export type UpdateFileCountPayload = {
+  fileCount: number | undefined;
+};
+
 /**
  * Update file manifest payload.
  */
@@ -235,6 +253,7 @@ function fileManifestReducer(
     case FileManifestActionKind.ClearFileManifest: {
       return {
         ...state,
+        fileCount: undefined,
         isEnabled: false,
       };
     }
@@ -252,6 +271,10 @@ function fileManifestReducer(
         isEnabled: true,
       };
     }
+    // Updates file count.
+    case FileManifestActionKind.UpdateFileCount: {
+      return { ...state, ...payload };
+    }
     // Updates file manifest.
     case FileManifestActionKind.UpdateFileManifest: {
       return { ...state, ...payload };

package/tests/buildRequestFilters.test.ts

@@ -24,26 +24,18 @@ describe("buildRequestFilters", () => {
       expect(result).toEqual(fileManifestState.filters);
     });
 
-    test("when at least one form facet has no terms selected", () => {
-      const fileManifestState = getFileManifestState(
-        FILTERS.FORM_INCOMPLETE_SET
-      );
+    test("when summary file count is not equal to initial file count", () => {
+      const fileManifestState = getFileManifestState(FILTERS.FORM_COMPLETE_SET);
       const result = buildRequestFilters(
-        fileManifestState,
-        FORM_FACET.INCOMPLETE_SET
+        { ...fileManifestState, summary: { fileCount: 9 } },
+        FORM_FACET.COMPLETE_SET
       );
       expect(result).toEqual(fileManifestState.filters);
     });
-
-    test("when at least one form facet has an unselected term", () => {
-      const fileManifestState = getFileManifestState(FILTERS.FORM_SUBSET);
-      const result = buildRequestFilters(fileManifestState, FORM_FACET.SUBSET);
-      expect(result).toEqual(fileManifestState.filters);
-    });
   });
 
   describe("should return filters excluding form related filters", () => {
-    test("when all form facets have all their terms selected", () => {
+    test("when summary file count is equal to initial file count", () => {
       const fileManifestState = getFileManifestState(FILTERS.FORM_COMPLETE_SET);
       const result = buildRequestFilters(
         fileManifestState,

package/tests/useRequestManifest.test.ts

@@ -109,6 +109,16 @@ describe("useRequestManifest", () => {
       });
     });
 
+    test("when fileManifestState fileCount is undefined", () => {
+      MOCK_USE_FILE_MANIFEST_STATE.mockReturnValue({
+        fileManifestDispatch: jest.fn(),
+        fileManifestState: { ...FILE_MANIFEST_STATE, fileCount: undefined },
+      });
+      testRequestManifest({
+        fileManifestFormat: MANIFEST_DOWNLOAD_FORMAT.VERBATIM_PFB,
+      });
+    });
+
     describe("form selection is not ready", () => {
       test("when a form facet is undefined", () => {
         testRequestManifest({