@databio/gtars 0.5.2 → 0.6.0

package/gtars_js.js

@@ -1,214 +1,77 @@
-let wasm;
+/* @ts-self-types="./gtars_js.d.ts" */
 
-let cachedUint8ArrayMemory0 = null;
-
-function getUint8ArrayMemory0() {
-    if (cachedUint8ArrayMemory0 === null || cachedUint8ArrayMemory0.byteLength === 0) {
-        cachedUint8ArrayMemory0 = new Uint8Array(wasm.memory.buffer);
-    }
-    return cachedUint8ArrayMemory0;
-}
-
-let cachedTextDecoder = new TextDecoder('utf-8', { ignoreBOM: true, fatal: true });
-
-cachedTextDecoder.decode();
-
-const MAX_SAFARI_DECODE_BYTES = 2146435072;
-let numBytesDecoded = 0;
-function decodeText(ptr, len) {
-    numBytesDecoded += len;
-    if (numBytesDecoded >= MAX_SAFARI_DECODE_BYTES) {
-        cachedTextDecoder = new TextDecoder('utf-8', { ignoreBOM: true, fatal: true });
-        cachedTextDecoder.decode();
-        numBytesDecoded = len;
-    }
-    return cachedTextDecoder.decode(getUint8ArrayMemory0().subarray(ptr, ptr + len));
-}
-
-function getStringFromWasm0(ptr, len) {
-    ptr = ptr >>> 0;
-    return decodeText(ptr, len);
-}
-
-let WASM_VECTOR_LEN = 0;
-
-const cachedTextEncoder = new TextEncoder();
-
-if (!('encodeInto' in cachedTextEncoder)) {
-    cachedTextEncoder.encodeInto = function (arg, view) {
-        const buf = cachedTextEncoder.encode(arg);
-        view.set(buf);
-        return {
-            read: arg.length,
-            written: buf.length
-        };
+export class BedClassificationOutput {
+    static __wrap(ptr) {
+        ptr = ptr >>> 0;
+        const obj = Object.create(BedClassificationOutput.prototype);
+        obj.__wbg_ptr = ptr;
+        BedClassificationOutputFinalization.register(obj, obj.__wbg_ptr, obj);
+        return obj;
     }
-}
-
-function passStringToWasm0(arg, malloc, realloc) {
-
-    if (realloc === undefined) {
-        const buf = cachedTextEncoder.encode(arg);
-        const ptr = malloc(buf.length, 1) >>> 0;
-        getUint8ArrayMemory0().subarray(ptr, ptr + buf.length).set(buf);
-        WASM_VECTOR_LEN = buf.length;
+    __destroy_into_raw() {
+        const ptr = this.__wbg_ptr;
+        this.__wbg_ptr = 0;
+        BedClassificationOutputFinalization.unregister(this);
         return ptr;
     }
-
-    let len = arg.length;
-    let ptr = malloc(len, 1) >>> 0;
-
-    const mem = getUint8ArrayMemory0();
-
-    let offset = 0;
-
-    for (; offset < len; offset++) {
-        const code = arg.charCodeAt(offset);
-        if (code > 0x7F) break;
-        mem[ptr + offset] = code;
-    }
-
-    if (offset !== len) {
-        if (offset !== 0) {
-            arg = arg.slice(offset);
-        }
-        ptr = realloc(ptr, len, len = offset + arg.length * 3, 1) >>> 0;
-        const view = getUint8ArrayMemory0().subarray(ptr + offset, ptr + len);
-        const ret = cachedTextEncoder.encodeInto(arg, view);
-
-        offset += ret.written;
-        ptr = realloc(ptr, len, offset, 1) >>> 0;
-    }
-
-    WASM_VECTOR_LEN = offset;
-    return ptr;
-}
-
-let cachedDataViewMemory0 = null;
-
-function getDataViewMemory0() {
-    if (cachedDataViewMemory0 === null || cachedDataViewMemory0.buffer.detached === true || (cachedDataViewMemory0.buffer.detached === undefined && cachedDataViewMemory0.buffer !== wasm.memory.buffer)) {
-        cachedDataViewMemory0 = new DataView(wasm.memory.buffer);
-    }
-    return cachedDataViewMemory0;
-}
-
-function isLikeNone(x) {
-    return x === undefined || x === null;
-}
-
-function debugString(val) {
-    // primitive types
-    const type = typeof val;
-    if (type == 'number' || type == 'boolean' || val == null) {
-        return  `${val}`;
-    }
-    if (type == 'string') {
-        return `"${val}"`;
-    }
-    if (type == 'symbol') {
-        const description = val.description;
-        if (description == null) {
-            return 'Symbol';
-        } else {
-            return `Symbol(${description})`;
-        }
-    }
-    if (type == 'function') {
-        const name = val.name;
-        if (typeof name == 'string' && name.length > 0) {
-            return `Function(${name})`;
-        } else {
-            return 'Function';
-        }
+    free() {
+        const ptr = this.__destroy_into_raw();
+        wasm.__wbg_bedclassificationoutput_free(ptr, 0);
     }
-    // objects
-    if (Array.isArray(val)) {
-        const length = val.length;
-        let debug = '[';
-        if (length > 0) {
-            debug += debugString(val[0]);
-        }
-        for(let i = 1; i < length; i++) {
-            debug += ', ' + debugString(val[i]);
+    /**
+     * @returns {string}
+     */
+    get bed_compliance() {
+        let deferred1_0;
+        let deferred1_1;
+        try {
+            const ret = wasm.bedclassificationoutput_bed_compliance(this.__wbg_ptr);
+            deferred1_0 = ret[0];
+            deferred1_1 = ret[1];
+            return getStringFromWasm0(ret[0], ret[1]);
+        } finally {
+            wasm.__wbindgen_free(deferred1_0, deferred1_1, 1);
         }
-        debug += ']';
-        return debug;
     }
-    // Test for built-in
-    const builtInMatches = /\[object ([^\]]+)\]/.exec(toString.call(val));
-    let className;
-    if (builtInMatches && builtInMatches.length > 1) {
-        className = builtInMatches[1];
-    } else {
-        // Failed to match the standard '[object ClassName]'
-        return toString.call(val);
+    /**
+     * @returns {number}
+     */
+    get compliant_columns() {
+        const ret = wasm.bedclassificationoutput_compliant_columns(this.__wbg_ptr);
+        return ret >>> 0;
     }
-    if (className == 'Object') {
-        // we're a user defined class or Object
-        // JSON.stringify avoids problems with cycles, and is generally much
-        // easier than looping through ownProperties of `val`.
+    /**
+     * @returns {string}
+     */
+    get data_format() {
+        let deferred1_0;
+        let deferred1_1;
         try {
-            return 'Object(' + JSON.stringify(val) + ')';
-        } catch (_) {
-            return 'Object';
+            const ret = wasm.bedclassificationoutput_data_format(this.__wbg_ptr);
+            deferred1_0 = ret[0];
+            deferred1_1 = ret[1];
+            return getStringFromWasm0(ret[0], ret[1]);
+        } finally {
+            wasm.__wbindgen_free(deferred1_0, deferred1_1, 1);
         }
     }
-    // errors
-    if (val instanceof Error) {
-        return `${val.name}: ${val.message}\n${val.stack}`;
-    }
-    // TODO we could test for more things here, like `Set`s and `Map`s.
-    return className;
-}
-
-function addToExternrefTable0(obj) {
-    const idx = wasm.__externref_table_alloc();
-    wasm.__wbindgen_externrefs.set(idx, obj);
-    return idx;
-}
-
-function handleError(f, args) {
-    try {
-        return f.apply(this, args);
-    } catch (e) {
-        const idx = addToExternrefTable0(e);
-        wasm.__wbindgen_exn_store(idx);
+    /**
+     * @returns {number}
+     */
+    get non_compliant_columns() {
+        const ret = wasm.bedclassificationoutput_non_compliant_columns(this.__wbg_ptr);
+        return ret >>> 0;
     }
 }
-
-function getArrayU8FromWasm0(ptr, len) {
-    ptr = ptr >>> 0;
-    return getUint8ArrayMemory0().subarray(ptr / 1, ptr / 1 + len);
-}
-
-function takeFromExternrefTable0(idx) {
-    const value = wasm.__wbindgen_externrefs.get(idx);
-    wasm.__externref_table_dealloc(idx);
-    return value;
-}
-/**
- * @param {string} name
- */
-export function greet(name) {
-    const ptr0 = passStringToWasm0(name, wasm.__wbindgen_malloc, wasm.__wbindgen_realloc);
-    const len0 = WASM_VECTOR_LEN;
-    wasm.greet(ptr0, len0);
-}
-
-const ChromosomeStatisticsFinalization = (typeof FinalizationRegistry === 'undefined')
-    ? { register: () => {}, unregister: () => {} }
-    : new FinalizationRegistry(ptr => wasm.__wbg_chromosomestatistics_free(ptr >>> 0, 1));
+if (Symbol.dispose) BedClassificationOutput.prototype[Symbol.dispose] = BedClassificationOutput.prototype.free;
 
 export class ChromosomeStatistics {
-
     __destroy_into_raw() {
         const ptr = this.__wbg_ptr;
         this.__wbg_ptr = 0;
         ChromosomeStatisticsFinalization.unregister(this);
         return ptr;
     }
-
     free() {
         const ptr = this.__destroy_into_raw();
         wasm.__wbg_chromosomestatistics_free(ptr, 0);
@@ -231,86 +94,76 @@ export class ChromosomeStatistics {
     /**
      * @returns {number}
      */
-    get start_nucleotide_position() {
-        const ret = wasm.chromosomestatistics_start_nucleotide_position(this.__wbg_ptr);
+    get end_nucleotide_position() {
+        const ret = wasm.chromosomestatistics_end_nucleotide_position(this.__wbg_ptr);
         return ret >>> 0;
     }
     /**
      * @returns {number}
      */
-    get end_nucleotide_position() {
-        const ret = wasm.chromosomestatistics_end_nucleotide_position(this.__wbg_ptr);
+    get maximum_region_length() {
+        const ret = wasm.chromosomestatistics_maximum_region_length(this.__wbg_ptr);
         return ret >>> 0;
     }
     /**
      * @returns {number}
      */
-    get number_of_regions() {
-        const ret = wasm.chromosomestatistics_number_of_regions(this.__wbg_ptr);
-        return ret >>> 0;
+    get mean_region_length() {
+        const ret = wasm.chromosomestatistics_mean_region_length(this.__wbg_ptr);
+        return ret;
     }
     /**
      * @returns {number}
      */
-    get minimum_region_length() {
-        const ret = wasm.chromosomestatistics_minimum_region_length(this.__wbg_ptr);
-        return ret >>> 0;
+    get median_region_length() {
+        const ret = wasm.chromosomestatistics_median_region_length(this.__wbg_ptr);
+        return ret;
     }
     /**
      * @returns {number}
      */
-    get maximum_region_length() {
-        const ret = wasm.chromosomestatistics_maximum_region_length(this.__wbg_ptr);
+    get minimum_region_length() {
+        const ret = wasm.bedclassificationoutput_compliant_columns(this.__wbg_ptr);
         return ret >>> 0;
     }
     /**
      * @returns {number}
      */
-    get mean_region_length() {
-        const ret = wasm.chromosomestatistics_mean_region_length(this.__wbg_ptr);
-        return ret;
+    get number_of_regions() {
+        const ret = wasm.chromosomestatistics_number_of_regions(this.__wbg_ptr);
+        return ret >>> 0;
     }
     /**
      * @returns {number}
      */
-    get median_region_length() {
-        const ret = wasm.chromosomestatistics_median_region_length(this.__wbg_ptr);
-        return ret;
-    }
-}
+    get start_nucleotide_position() {
+        const ret = wasm.chromosomestatistics_start_nucleotide_position(this.__wbg_ptr);
+        return ret >>> 0;
+    }
+}
 if (Symbol.dispose) ChromosomeStatistics.prototype[Symbol.dispose] = ChromosomeStatistics.prototype.free;
 
-const OverlapperFinalization = (typeof FinalizationRegistry === 'undefined')
-    ? { register: () => {}, unregister: () => {} }
-    : new FinalizationRegistry(ptr => wasm.__wbg_overlapper_free(ptr >>> 0, 1));
-
 export class Overlapper {
-
     __destroy_into_raw() {
         const ptr = this.__wbg_ptr;
         this.__wbg_ptr = 0;
         OverlapperFinalization.unregister(this);
         return ptr;
     }
-
     free() {
         const ptr = this.__destroy_into_raw();
         wasm.__wbg_overlapper_free(ptr, 0);
     }
     /**
-     * @param {any} universe
-     * @param {string} backend
+     * @param {any} regions
+     * @returns {any}
      */
-    constructor(universe, backend) {
-        const ptr0 = passStringToWasm0(backend, wasm.__wbindgen_malloc, wasm.__wbindgen_realloc);
-        const len0 = WASM_VECTOR_LEN;
-        const ret = wasm.overlapper_new(universe, ptr0, len0);
+    find(regions) {
+        const ret = wasm.overlapper_find(this.__wbg_ptr, regions);
         if (ret[2]) {
             throw takeFromExternrefTable0(ret[1]);
         }
-        this.__wbg_ptr = ret[0] >>> 0;
-        OverlapperFinalization.register(this, this.__wbg_ptr, this);
-        return this;
+        return takeFromExternrefTable0(ret[0]);
     }
     /**
      * @returns {string}
@@ -328,32 +181,30 @@ export class Overlapper {
         }
     }
     /**
-     * @param {any} regions
-     * @returns {any}
+     * @param {any} universe
+     * @param {string} backend
      */
-    find(regions) {
-        const ret = wasm.overlapper_find(this.__wbg_ptr, regions);
+    constructor(universe, backend) {
+        const ptr0 = passStringToWasm0(backend, wasm.__wbindgen_malloc, wasm.__wbindgen_realloc);
+        const len0 = WASM_VECTOR_LEN;
+        const ret = wasm.overlapper_new(universe, ptr0, len0);
         if (ret[2]) {
             throw takeFromExternrefTable0(ret[1]);
         }
-        return takeFromExternrefTable0(ret[0]);
+        this.__wbg_ptr = ret[0] >>> 0;
+        OverlapperFinalization.register(this, this.__wbg_ptr, this);
+        return this;
     }
 }
 if (Symbol.dispose) Overlapper.prototype[Symbol.dispose] = Overlapper.prototype.free;
 
-const RegionDistributionFinalization = (typeof FinalizationRegistry === 'undefined')
-    ? { register: () => {}, unregister: () => {} }
-    : new FinalizationRegistry(ptr => wasm.__wbg_regiondistribution_free(ptr >>> 0, 1));
-
 export class RegionDistribution {
-
     __destroy_into_raw() {
         const ptr = this.__wbg_ptr;
         this.__wbg_ptr = 0;
         RegionDistributionFinalization.unregister(this);
         return ptr;
     }
-
     free() {
         const ptr = this.__destroy_into_raw();
         wasm.__wbg_regiondistribution_free(ptr, 0);
@@ -361,55 +212,48 @@ export class RegionDistribution {
 }
 if (Symbol.dispose) RegionDistribution.prototype[Symbol.dispose] = RegionDistribution.prototype.free;
 
-const RegionSetFinalization = (typeof FinalizationRegistry === 'undefined')
-    ? { register: () => {}, unregister: () => {} }
-    : new FinalizationRegistry(ptr => wasm.__wbg_regionset_free(ptr >>> 0, 1));
-
 export class RegionSet {
-
     __destroy_into_raw() {
         const ptr = this.__wbg_ptr;
         this.__wbg_ptr = 0;
         RegionSetFinalization.unregister(this);
         return ptr;
     }
-
     free() {
         const ptr = this.__destroy_into_raw();
         wasm.__wbg_regionset_free(ptr, 0);
     }
     /**
-     * @param {any} regions
+     * @returns {any}
      */
-    constructor(regions) {
-        const ret = wasm.regionset_new(regions);
+    chromosomeStatistics() {
+        const ret = wasm.regionset_chromosomeStatistics(this.__wbg_ptr);
         if (ret[2]) {
             throw takeFromExternrefTable0(ret[1]);
         }
-        this.__wbg_ptr = ret[0] >>> 0;
-        RegionSetFinalization.register(this, this.__wbg_ptr, this);
-        return this;
-    }
-    /**
-     * @returns {number}
-     */
-    get numberOfRegions() {
-        const ret = wasm.regionset_numberOfRegions(this.__wbg_ptr);
-        return ret;
+        return takeFromExternrefTable0(ret[0]);
     }
     /**
-     * @returns {number}
+     * @returns {BedClassificationOutput}
      */
-    get meanRegionWidth() {
-        const ret = wasm.regionset_meanRegionWidth(this.__wbg_ptr);
-        return ret;
+    get classify() {
+        const ret = wasm.regionset_classify(this.__wbg_ptr);
+        return BedClassificationOutput.__wrap(ret);
     }
     /**
-     * @returns {number}
+     * @returns {string}
      */
-    get nucleotidesLength() {
-        const ret = wasm.regionset_nucleotidesLength(this.__wbg_ptr);
-        return ret;
+    get firstRegion() {
+        let deferred1_0;
+        let deferred1_1;
+        try {
+            const ret = wasm.regionset_firstRegion(this.__wbg_ptr);
+            deferred1_0 = ret[0];
+            deferred1_1 = ret[1];
+            return getStringFromWasm0(ret[0], ret[1]);
+        } finally {
+            wasm.__wbindgen_free(deferred1_0, deferred1_1, 1);
+        }
     }
     /**
      * @returns {string}
@@ -427,14 +271,37 @@ export class RegionSet {
         }
     }
     /**
-     * @returns {any}
+     * @returns {number}
      */
-    chromosomeStatistics() {
-        const ret = wasm.regionset_chromosomeStatistics(this.__wbg_ptr);
+    get meanRegionWidth() {
+        const ret = wasm.regionset_meanRegionWidth(this.__wbg_ptr);
+        return ret;
+    }
+    /**
+     * @param {any} regions
+     */
+    constructor(regions) {
+        const ret = wasm.regionset_new(regions);
         if (ret[2]) {
             throw takeFromExternrefTable0(ret[1]);
         }
-        return takeFromExternrefTable0(ret[0]);
+        this.__wbg_ptr = ret[0] >>> 0;
+        RegionSetFinalization.register(this, this.__wbg_ptr, this);
+        return this;
+    }
+    /**
+     * @returns {number}
+     */
+    get nucleotidesLength() {
+        const ret = wasm.regionset_nucleotidesLength(this.__wbg_ptr);
+        return ret;
+    }
+    /**
+     * @returns {number}
+     */
+    get numberOfRegions() {
+        const ret = wasm.regionset_numberOfRegions(this.__wbg_ptr);
+        return ret;
     }
     /**
      * @param {number} n_bins
@@ -450,44 +317,67 @@ export class RegionSet {
 }
 if (Symbol.dispose) RegionSet.prototype[Symbol.dispose] = RegionSet.prototype.free;
 
-const TokenizerFinalization = (typeof FinalizationRegistry === 'undefined')
-    ? { register: () => {}, unregister: () => {} }
-    : new FinalizationRegistry(ptr => wasm.__wbg_tokenizer_free(ptr >>> 0, 1));
-
 export class Tokenizer {
-
     __destroy_into_raw() {
         const ptr = this.__wbg_ptr;
         this.__wbg_ptr = 0;
         TokenizerFinalization.unregister(this);
         return ptr;
     }
-
     free() {
         const ptr = this.__destroy_into_raw();
         wasm.__wbg_tokenizer_free(ptr, 0);
     }
     /**
-     * @param {any} universe
-     * @param {string} backend
+     * @returns {string}
      */
-    constructor(universe, backend) {
-        const ptr0 = passStringToWasm0(backend, wasm.__wbindgen_malloc, wasm.__wbindgen_realloc);
-        const len0 = WASM_VECTOR_LEN;
-        const ret = wasm.tokenizer_new(universe, ptr0, len0);
-        if (ret[2]) {
-            throw takeFromExternrefTable0(ret[1]);
+    get bosToken() {
+        let deferred1_0;
+        let deferred1_1;
+        try {
+            const ret = wasm.tokenizer_bosToken(this.__wbg_ptr);
+            deferred1_0 = ret[0];
+            deferred1_1 = ret[1];
+            return getStringFromWasm0(ret[0], ret[1]);
+        } finally {
+            wasm.__wbindgen_free(deferred1_0, deferred1_1, 1);
         }
-        this.__wbg_ptr = ret[0] >>> 0;
-        TokenizerFinalization.register(this, this.__wbg_ptr, this);
-        return this;
     }
     /**
-     * @param {any} regions
+     * @returns {number}
+     */
+    get bosTokenId() {
+        const ret = wasm.tokenizer_bosTokenId(this.__wbg_ptr);
+        return ret >>> 0;
+    }
+    /**
+     * @returns {string}
+     */
+    get clsToken() {
+        let deferred1_0;
+        let deferred1_1;
+        try {
+            const ret = wasm.tokenizer_clsToken(this.__wbg_ptr);
+            deferred1_0 = ret[0];
+            deferred1_1 = ret[1];
+            return getStringFromWasm0(ret[0], ret[1]);
+        } finally {
+            wasm.__wbindgen_free(deferred1_0, deferred1_1, 1);
+        }
+    }
+    /**
+     * @returns {number}
+     */
+    get clsTokenId() {
+        const ret = wasm.tokenizer_clsTokenId(this.__wbg_ptr);
+        return ret >>> 0;
+    }
+    /**
+     * @param {any} ids
      * @returns {any}
      */
-    tokenize(regions) {
-        const ret = wasm.tokenizer_tokenize(this.__wbg_ptr, regions);
+    decode(ids) {
+        const ret = wasm.tokenizer_decode(this.__wbg_ptr, ids);
         if (ret[2]) {
             throw takeFromExternrefTable0(ret[1]);
         }
@@ -505,24 +395,52 @@ export class Tokenizer {
         return takeFromExternrefTable0(ret[0]);
     }
     /**
-     * @param {any} ids
+     * @returns {string}
+     */
+    get eosToken() {
+        let deferred1_0;
+        let deferred1_1;
+        try {
+            const ret = wasm.tokenizer_eosToken(this.__wbg_ptr);
+            deferred1_0 = ret[0];
+            deferred1_1 = ret[1];
+            return getStringFromWasm0(ret[0], ret[1]);
+        } finally {
+            wasm.__wbindgen_free(deferred1_0, deferred1_1, 1);
+        }
+    }
+    /**
+     * @returns {number}
+     */
+    get eosTokenId() {
+        const ret = wasm.tokenizer_eosTokenId(this.__wbg_ptr);
+        return ret >>> 0;
+    }
+    /**
      * @returns {any}
      */
-    decode(ids) {
-        const ret = wasm.tokenizer_decode(this.__wbg_ptr, ids);
+    getVocab() {
+        const ret = wasm.tokenizer_getVocab(this.__wbg_ptr);
         if (ret[2]) {
             throw takeFromExternrefTable0(ret[1]);
         }
         return takeFromExternrefTable0(ret[0]);
     }
+    /**
+     * @returns {number}
+     */
+    get length() {
+        const ret = wasm.tokenizer_length(this.__wbg_ptr);
+        return ret >>> 0;
+    }
     /**
      * @returns {string}
      */
-    get unkToken() {
+    get maskToken() {
         let deferred1_0;
         let deferred1_1;
         try {
-            const ret = wasm.tokenizer_unkToken(this.__wbg_ptr);
+            const ret = wasm.tokenizer_maskToken(this.__wbg_ptr);
             deferred1_0 = ret[0];
             deferred1_1 = ret[1];
             return getStringFromWasm0(ret[0], ret[1]);
@@ -530,6 +448,28 @@ export class Tokenizer {
             wasm.__wbindgen_free(deferred1_0, deferred1_1, 1);
         }
     }
+    /**
+     * @returns {number}
+     */
+    get maskTokenId() {
+        const ret = wasm.tokenizer_maskTokenId(this.__wbg_ptr);
+        return ret >>> 0;
+    }
+    /**
+     * @param {any} universe
+     * @param {string} backend
+     */
+    constructor(universe, backend) {
+        const ptr0 = passStringToWasm0(backend, wasm.__wbindgen_malloc, wasm.__wbindgen_realloc);
+        const len0 = WASM_VECTOR_LEN;
+        const ret = wasm.tokenizer_new(universe, ptr0, len0);
+        if (ret[2]) {
+            throw takeFromExternrefTable0(ret[1]);
+        }
+        this.__wbg_ptr = ret[0] >>> 0;
+        TokenizerFinalization.register(this, this.__wbg_ptr, this);
+        return this;
+    }
     /**
      * @returns {string}
      */
@@ -545,14 +485,21 @@ export class Tokenizer {
             wasm.__wbindgen_free(deferred1_0, deferred1_1, 1);
         }
     }
+    /**
+     * @returns {number}
+     */
+    get padTokenId() {
+        const ret = wasm.tokenizer_padTokenId(this.__wbg_ptr);
+        return ret >>> 0;
+    }
     /**
      * @returns {string}
      */
-    get maskToken() {
+    get sepToken() {
         let deferred1_0;
         let deferred1_1;
         try {
-            const ret = wasm.tokenizer_maskToken(this.__wbg_ptr);
+            const ret = wasm.tokenizer_sepToken(this.__wbg_ptr);
             deferred1_0 = ret[0];
             deferred1_1 = ret[1];
             return getStringFromWasm0(ret[0], ret[1]);
@@ -561,58 +508,41 @@ export class Tokenizer {
         }
     }
     /**
-     * @returns {string}
+     * @returns {number}
      */
-    get clsToken() {
-        let deferred1_0;
-        let deferred1_1;
-        try {
-            const ret = wasm.tokenizer_clsToken(this.__wbg_ptr);
-            deferred1_0 = ret[0];
-            deferred1_1 = ret[1];
-            return getStringFromWasm0(ret[0], ret[1]);
-        } finally {
-            wasm.__wbindgen_free(deferred1_0, deferred1_1, 1);
-        }
+    get sepTokenId() {
+        const ret = wasm.tokenizer_sepTokenId(this.__wbg_ptr);
+        return ret >>> 0;
     }
     /**
-     * @returns {string}
+     * @returns {any}
      */
-    get bosToken() {
-        let deferred1_0;
-        let deferred1_1;
-        try {
-            const ret = wasm.tokenizer_bosToken(this.__wbg_ptr);
-            deferred1_0 = ret[0];
-            deferred1_1 = ret[1];
-            return getStringFromWasm0(ret[0], ret[1]);
-        } finally {
-            wasm.__wbindgen_free(deferred1_0, deferred1_1, 1);
+    specialTokensMap() {
+        const ret = wasm.tokenizer_specialTokensMap(this.__wbg_ptr);
+        if (ret[2]) {
+            throw takeFromExternrefTable0(ret[1]);
         }
+        return takeFromExternrefTable0(ret[0]);
     }
     /**
-     * @returns {string}
+     * @param {any} regions
+     * @returns {any}
      */
-    get eosToken() {
-        let deferred1_0;
-        let deferred1_1;
-        try {
-            const ret = wasm.tokenizer_eosToken(this.__wbg_ptr);
-            deferred1_0 = ret[0];
-            deferred1_1 = ret[1];
-            return getStringFromWasm0(ret[0], ret[1]);
-        } finally {
-            wasm.__wbindgen_free(deferred1_0, deferred1_1, 1);
+    tokenize(regions) {
+        const ret = wasm.tokenizer_tokenize(this.__wbg_ptr, regions);
+        if (ret[2]) {
+            throw takeFromExternrefTable0(ret[1]);
         }
+        return takeFromExternrefTable0(ret[0]);
     }
     /**
      * @returns {string}
      */
-    get sepToken() {
+    get unkToken() {
         let deferred1_0;
         let deferred1_1;
         try {
-            const ret = wasm.tokenizer_sepToken(this.__wbg_ptr);
+            const ret = wasm.tokenizer_unkToken(this.__wbg_ptr);
             deferred1_0 = ret[0];
             deferred1_1 = ret[1];
             return getStringFromWasm0(ret[0], ret[1]);
@@ -623,324 +553,797 @@ export class Tokenizer {
     /**
      * @returns {number}
      */
-    get padTokenId() {
-        const ret = wasm.tokenizer_padTokenId(this.__wbg_ptr);
+    get unkTokenId() {
+        const ret = wasm.tokenizer_unkTokenId(this.__wbg_ptr);
         return ret >>> 0;
     }
     /**
      * @returns {number}
      */
-    get maskTokenId() {
-        const ret = wasm.tokenizer_maskTokenId(this.__wbg_ptr);
+    get vocabSize() {
+        const ret = wasm.tokenizer_length(this.__wbg_ptr);
         return ret >>> 0;
     }
-    /**
-     * @returns {number}
-     */
-    get clsTokenId() {
-        const ret = wasm.tokenizer_clsTokenId(this.__wbg_ptr);
-        return ret >>> 0;
+}
+if (Symbol.dispose) Tokenizer.prototype[Symbol.dispose] = Tokenizer.prototype.free;
+
+/**
+ * Canonicalize a JSON string according to RFC-8785.
+ *
+ * This is useful for computing digests of JSON objects in a deterministic way.
+ *
+ * # Arguments
+ * * `json_str` - A JSON string
+ *
+ * # Returns
+ * The canonicalized JSON string
+ * @param {string} json_str
+ * @returns {string}
+ */
+export function canonicalizeJsonString(json_str) {
+    let deferred3_0;
+    let deferred3_1;
+    try {
+        const ptr0 = passStringToWasm0(json_str, wasm.__wbindgen_malloc, wasm.__wbindgen_realloc);
+        const len0 = WASM_VECTOR_LEN;
+        const ret = wasm.canonicalizeJsonString(ptr0, len0);
+        var ptr2 = ret[0];
+        var len2 = ret[1];
+        if (ret[3]) {
+            ptr2 = 0; len2 = 0;
+            throw takeFromExternrefTable0(ret[2]);
+        }
+        deferred3_0 = ptr2;
+        deferred3_1 = len2;
+        return getStringFromWasm0(ptr2, len2);
+    } finally {
+        wasm.__wbindgen_free(deferred3_0, deferred3_1, 1);
     }
-    /**
-     * @returns {number}
-     */
-    get bosTokenId() {
-        const ret = wasm.tokenizer_bosTokenId(this.__wbg_ptr);
-        return ret >>> 0;
+}
+
+/**
+ * Compute the MD5 digest of a string.
+ *
+ * Low-level function that does NOT uppercase the input.
+ *
+ * # Arguments
+ * * `input` - The input string
+ *
+ * # Returns
+ * The MD5 digest as a hex string
+ * @param {string} input
+ * @returns {string}
+ */
+export function computeMd5(input) {
+    let deferred2_0;
+    let deferred2_1;
+    try {
+        const ptr0 = passStringToWasm0(input, wasm.__wbindgen_malloc, wasm.__wbindgen_realloc);
+        const len0 = WASM_VECTOR_LEN;
+        const ret = wasm.computeMd5(ptr0, len0);
+        deferred2_0 = ret[0];
+        deferred2_1 = ret[1];
+        return getStringFromWasm0(ret[0], ret[1]);
+    } finally {
+        wasm.__wbindgen_free(deferred2_0, deferred2_1, 1);
     }
-    /**
-     * @returns {number}
-     */
-    get eosTokenId() {
-        const ret = wasm.tokenizer_eosTokenId(this.__wbg_ptr);
-        return ret >>> 0;
+}
+
+/**
+ * Compute the sha512t24u digest of a string.
+ *
+ * This is a low-level function that computes the GA4GH standard digest
+ * of arbitrary input. Unlike `sequence_digest`, this does NOT uppercase
+ * the input.
+ *
+ * # Arguments
+ * * `input` - The input string
+ *
+ * # Returns
+ * The sha512t24u digest string (base64url encoded)
+ * @param {string} input
+ * @returns {string}
+ */
+export function computeSha512t24u(input) {
+    let deferred2_0;
+    let deferred2_1;
+    try {
+        const ptr0 = passStringToWasm0(input, wasm.__wbindgen_malloc, wasm.__wbindgen_realloc);
+        const len0 = WASM_VECTOR_LEN;
+        const ret = wasm.computeSha512t24u(ptr0, len0);
+        deferred2_0 = ret[0];
+        deferred2_1 = ret[1];
+        return getStringFromWasm0(ret[0], ret[1]);
+    } finally {
+        wasm.__wbindgen_free(deferred2_0, deferred2_1, 1);
     }
-    /**
-     * @returns {number}
-     */
-    get sepTokenId() {
-        const ret = wasm.tokenizer_sepTokenId(this.__wbg_ptr);
-        return ret >>> 0;
+}
+
+/**
+ * Compute a seqcol (sequence collection) digest from FASTA content.
+ *
+ * This function takes FASTA file content as bytes and returns a JSON object
+ * containing the sequence collection digest and metadata. Automatically handles
+ * gzip-compressed FASTA files.
+ *
+ * # Arguments
+ * * `fasta_content` - The FASTA file content as a Uint8Array (supports gzip)
+ *
+ * # Returns
+ * A JavaScript object containing:
+ * - `digest`: The top-level seqcol digest
+ * - `names_digest`: Level 1 digest of sequence names
+ * - `sequences_digest`: Level 1 digest of sequence digests
+ * - `lengths_digest`: Level 1 digest of sequence lengths
+ * - `n_sequences`: Number of sequences
+ * - `sequences`: Array of sequence metadata objects
+ *
+ * # Example (JavaScript)
+ * ```javascript
+ * const fastaContent = new TextEncoder().encode(">chr1\nACGT\n");
+ * const result = digestSeqcol(fastaContent);
+ * console.log(result.digest);  // Top-level seqcol digest
+ * ```
+ * @param {Uint8Array} fasta_content
+ * @returns {any}
+ */
+export function digestSeqcol(fasta_content) {
+    const ptr0 = passArray8ToWasm0(fasta_content, wasm.__wbindgen_malloc);
+    const len0 = WASM_VECTOR_LEN;
+    const ret = wasm.digestSeqcol(ptr0, len0);
+    if (ret[2]) {
+        throw takeFromExternrefTable0(ret[1]);
     }
-    /**
-     * @returns {number}
-     */
-    get unkTokenId() {
-        const ret = wasm.tokenizer_unkTokenId(this.__wbg_ptr);
-        return ret >>> 0;
+    return takeFromExternrefTable0(ret[0]);
+}
+
+/**
+ * Finalize the hasher and return the results.
+ *
+ * This consumes the hasher and frees its resources.
+ * After calling this, the handle is no longer valid.
+ *
+ * # Arguments
+ * * `handle` - The hasher handle from `fastaHasherNew()`
+ *
+ * # Returns
+ * A JavaScript object with the sequence collection result,
+ * or an error if the handle is invalid.
+ *
+ * # Example (JavaScript)
+ * ```javascript
+ * const handle = fastaHasherNew();
+ * fastaHasherUpdate(handle, fastaData);
+ * const result = fastaHasherFinish(handle);
+ * console.log(result.digest);
+ * ```
+ * @param {number} handle
+ * @returns {any}
+ */
+export function fastaHasherFinish(handle) {
+    const ret = wasm.fastaHasherFinish(handle);
+    if (ret[2]) {
+        throw takeFromExternrefTable0(ret[1]);
     }
-    /**
-     * @returns {number}
-     */
-    get vocabSize() {
-        const ret = wasm.tokenizer_length(this.__wbg_ptr);
-        return ret >>> 0;
+    return takeFromExternrefTable0(ret[0]);
+}
+
+/**
+ * Free a hasher without getting results.
+ *
+ * Use this if you need to cancel processing early.
+ * After calling this, the handle is no longer valid.
+ *
+ * # Arguments
+ * * `handle` - The hasher handle from `fastaHasherNew()`
+ *
+ * # Returns
+ * `true` if the handle was valid and freed, `false` otherwise.
+ * @param {number} handle
+ * @returns {boolean}
+ */
+export function fastaHasherFree(handle) {
+    const ret = wasm.fastaHasherFree(handle);
+    return ret !== 0;
+}
+
+/**
+ * Create a new streaming FASTA hasher.
+ *
+ * Returns a handle (u32) that must be used in subsequent calls.
+ * The handle must be freed with `fastaHasherFinish()` or `fastaHasherFree()`.
+ *
+ * # Returns
+ * A handle ID (always > 0).
+ *
+ * # Example (JavaScript)
+ * ```javascript
+ * const handle = fastaHasherNew();
+ * // ... use handle with fastaHasherUpdate ...
+ * const result = fastaHasherFinish(handle);
+ * ```
+ * @returns {number}
+ */
+export function fastaHasherNew() {
+    const ret = wasm.fastaHasherNew();
+    return ret >>> 0;
+}
+
+/**
+ * Get the current progress of a streaming hasher.
+ *
+ * # Arguments
+ * * `handle` - The hasher handle from `fastaHasherNew()`
+ *
+ * # Returns
+ * A JavaScript object with progress information, or null if handle is invalid.
+ * The object contains:
+ * - `completed_sequences`: Number of fully processed sequences
+ * - `current_sequence_name`: Name of sequence being processed (if any)
+ * - `current_sequence_length`: Length of sequence being processed
+ * @param {number} handle
+ * @returns {any}
+ */
+export function fastaHasherProgress(handle) {
+    const ret = wasm.fastaHasherProgress(handle);
+    if (ret[2]) {
+        throw takeFromExternrefTable0(ret[1]);
     }
-    /**
-     * @returns {any}
-     */
-    specialTokensMap() {
-        const ret = wasm.tokenizer_specialTokensMap(this.__wbg_ptr);
-        if (ret[2]) {
-            throw takeFromExternrefTable0(ret[1]);
+    return takeFromExternrefTable0(ret[0]);
+}
+
+/**
+ * Process a chunk of FASTA data.
+ *
+ * This can be called multiple times with successive chunks.
+ * Handles both plain text and gzip-compressed FASTA.
+ *
+ * # Arguments
+ * * `handle` - The hasher handle from `fastaHasherNew()`
+ * * `chunk` - A chunk of FASTA data as Uint8Array
+ *
+ * # Returns
+ * Ok on success, or an error with details about what went wrong.
+ *
+ * # Example (JavaScript)
+ * ```javascript
+ * const handle = fastaHasherNew();
+ * fastaHasherUpdate(handle, new TextEncoder().encode(">chr1\nACGT"));
+ * fastaHasherUpdate(handle, new TextEncoder().encode("\n>chr2\nTGCA\n"));
+ * ```
+ * @param {number} handle
+ * @param {Uint8Array} chunk
+ */
+export function fastaHasherUpdate(handle, chunk) {
+    const ptr0 = passArray8ToWasm0(chunk, wasm.__wbindgen_malloc);
+    const len0 = WASM_VECTOR_LEN;
+    const ret = wasm.fastaHasherUpdate(handle, ptr0, len0);
+    if (ret[1]) {
+        throw takeFromExternrefTable0(ret[0]);
+    }
+}
+
+/**
+ * @param {string} name
+ */
+export function greet(name) {
+    const ptr0 = passStringToWasm0(name, wasm.__wbindgen_malloc, wasm.__wbindgen_realloc);
+    const len0 = WASM_VECTOR_LEN;
+    wasm.greet(ptr0, len0);
+}
+
+/**
+ * Compute a sequence digest (sha512t24u) from raw sequence data.
+ *
+ * This is the GA4GH standard digest for sequences. The sequence is uppercased
+ * before computing the digest.
+ *
+ * # Arguments
+ * * `sequence` - The sequence string (A, C, G, T, etc.)
+ *
+ * # Returns
+ * The sha512t24u digest string (base64url encoded)
+ *
+ * # Example (JavaScript)
+ * ```javascript
+ * const digest = sequenceDigest("ACGT");
+ * console.log(digest);  // "aKF498dAxcJAqme6QYQ7EZ07-fiw8Kw2"
+ * ```
+ * @param {string} sequence
+ * @returns {string}
+ */
+export function sequenceDigest(sequence) {
+    let deferred2_0;
+    let deferred2_1;
+    try {
+        const ptr0 = passStringToWasm0(sequence, wasm.__wbindgen_malloc, wasm.__wbindgen_realloc);
+        const len0 = WASM_VECTOR_LEN;
+        const ret = wasm.sequenceDigest(ptr0, len0);
+        deferred2_0 = ret[0];
+        deferred2_1 = ret[1];
+        return getStringFromWasm0(ret[0], ret[1]);
+    } finally {
+        wasm.__wbindgen_free(deferred2_0, deferred2_1, 1);
+    }
+}
+
+/**
+ * Compute an MD5 digest from raw sequence data.
+ *
+ * The sequence is uppercased before computing the digest.
+ *
+ * # Arguments
+ * * `sequence` - The sequence string
+ *
+ * # Returns
+ * The MD5 digest as a hex string
+ * @param {string} sequence
+ * @returns {string}
+ */
+export function sequenceMd5(sequence) {
+    let deferred2_0;
+    let deferred2_1;
+    try {
+        const ptr0 = passStringToWasm0(sequence, wasm.__wbindgen_malloc, wasm.__wbindgen_realloc);
+        const len0 = WASM_VECTOR_LEN;
+        const ret = wasm.sequenceMd5(ptr0, len0);
+        deferred2_0 = ret[0];
+        deferred2_1 = ret[1];
+        return getStringFromWasm0(ret[0], ret[1]);
+    } finally {
+        wasm.__wbindgen_free(deferred2_0, deferred2_1, 1);
+    }
+}
+
+function __wbg_get_imports() {
+    const import0 = {
+        __proto__: null,
+        __wbg_Error_8c4e43fe74559d73: function(arg0, arg1) {
+            const ret = Error(getStringFromWasm0(arg0, arg1));
+            return ret;
+        },
+        __wbg_String_fed4d24b68977888: function(arg0, arg1) {
+            const ret = String(arg1);
+            const ptr1 = passStringToWasm0(ret, wasm.__wbindgen_malloc, wasm.__wbindgen_realloc);
+            const len1 = WASM_VECTOR_LEN;
+            getDataViewMemory0().setInt32(arg0 + 4 * 1, len1, true);
+            getDataViewMemory0().setInt32(arg0 + 4 * 0, ptr1, true);
+        },
+        __wbg___wbindgen_boolean_get_bbbb1c18aa2f5e25: function(arg0) {
+            const v = arg0;
+            const ret = typeof(v) === 'boolean' ? v : undefined;
+            return isLikeNone(ret) ? 0xFFFFFF : ret ? 1 : 0;
+        },
+        __wbg___wbindgen_debug_string_0bc8482c6e3508ae: function(arg0, arg1) {
+            const ret = debugString(arg1);
+            const ptr1 = passStringToWasm0(ret, wasm.__wbindgen_malloc, wasm.__wbindgen_realloc);
+            const len1 = WASM_VECTOR_LEN;
+            getDataViewMemory0().setInt32(arg0 + 4 * 1, len1, true);
+            getDataViewMemory0().setInt32(arg0 + 4 * 0, ptr1, true);
+        },
+        __wbg___wbindgen_is_function_0095a73b8b156f76: function(arg0) {
+            const ret = typeof(arg0) === 'function';
+            return ret;
+        },
+        __wbg___wbindgen_is_object_5ae8e5880f2c1fbd: function(arg0) {
+            const val = arg0;
+            const ret = typeof(val) === 'object' && val !== null;
+            return ret;
+        },
+        __wbg___wbindgen_is_string_cd444516edc5b180: function(arg0) {
+            const ret = typeof(arg0) === 'string';
+            return ret;
+        },
+        __wbg___wbindgen_jsval_loose_eq_9dd77d8cd6671811: function(arg0, arg1) {
+            const ret = arg0 == arg1;
+            return ret;
+        },
+        __wbg___wbindgen_number_get_8ff4255516ccad3e: function(arg0, arg1) {
+            const obj = arg1;
+            const ret = typeof(obj) === 'number' ? obj : undefined;
+            getDataViewMemory0().setFloat64(arg0 + 8 * 1, isLikeNone(ret) ? 0 : ret, true);
+            getDataViewMemory0().setInt32(arg0 + 4 * 0, !isLikeNone(ret), true);
+        },
+        __wbg___wbindgen_string_get_72fb696202c56729: function(arg0, arg1) {
+            const obj = arg1;
+            const ret = typeof(obj) === 'string' ? obj : undefined;
+            var ptr1 = isLikeNone(ret) ? 0 : passStringToWasm0(ret, wasm.__wbindgen_malloc, wasm.__wbindgen_realloc);
+            var len1 = WASM_VECTOR_LEN;
+            getDataViewMemory0().setInt32(arg0 + 4 * 1, len1, true);
+            getDataViewMemory0().setInt32(arg0 + 4 * 0, ptr1, true);
+        },
+        __wbg___wbindgen_throw_be289d5034ed271b: function(arg0, arg1) {
+            throw new Error(getStringFromWasm0(arg0, arg1));
+        },
+        __wbg_alert_b04a0b1c35e31e39: function(arg0, arg1) {
+            alert(getStringFromWasm0(arg0, arg1));
+        },
+        __wbg_call_389efe28435a9388: function() { return handleError(function (arg0, arg1) {
+            const ret = arg0.call(arg1);
+            return ret;
+        }, arguments); },
+        __wbg_done_57b39ecd9addfe81: function(arg0) {
+            const ret = arg0.done;
+            return ret;
+        },
+        __wbg_get_9b94d73e6221f75c: function(arg0, arg1) {
+            const ret = arg0[arg1 >>> 0];
+            return ret;
+        },
+        __wbg_get_b3ed3ad4be2bc8ac: function() { return handleError(function (arg0, arg1) {
+            const ret = Reflect.get(arg0, arg1);
+            return ret;
+        }, arguments); },
+        __wbg_instanceof_ArrayBuffer_c367199e2fa2aa04: function(arg0) {
+            let result;
+            try {
+                result = arg0 instanceof ArrayBuffer;
+            } catch (_) {
+                result = false;
+            }
+            const ret = result;
+            return ret;
+        },
+        __wbg_instanceof_Uint8Array_9b9075935c74707c: function(arg0) {
+            let result;
+            try {
+                result = arg0 instanceof Uint8Array;
+            } catch (_) {
+                result = false;
+            }
+            const ret = result;
+            return ret;
+        },
+        __wbg_isArray_d314bb98fcf08331: function(arg0) {
+            const ret = Array.isArray(arg0);
+            return ret;
+        },
+        __wbg_isSafeInteger_bfbc7332a9768d2a: function(arg0) {
+            const ret = Number.isSafeInteger(arg0);
+            return ret;
+        },
+        __wbg_iterator_6ff6560ca1568e55: function() {
+            const ret = Symbol.iterator;
+            return ret;
+        },
+        __wbg_length_32ed9a279acd054c: function(arg0) {
+            const ret = arg0.length;
+            return ret;
+        },
+        __wbg_length_35a7bace40f36eac: function(arg0) {
+            const ret = arg0.length;
+            return ret;
+        },
+        __wbg_new_361308b2356cecd0: function() {
+            const ret = new Object();
+            return ret;
+        },
+        __wbg_new_3eb36ae241fe6f44: function() {
+            const ret = new Array();
+            return ret;
+        },
+        __wbg_new_dca287b076112a51: function() {
+            const ret = new Map();
+            return ret;
+        },
+        __wbg_new_dd2b680c8bf6ae29: function(arg0) {
+            const ret = new Uint8Array(arg0);
+            return ret;
+        },
+        __wbg_next_3482f54c49e8af19: function() { return handleError(function (arg0) {
+            const ret = arg0.next();
+            return ret;
+        }, arguments); },
+        __wbg_next_418f80d8f5303233: function(arg0) {
+            const ret = arg0.next;
+            return ret;
+        },
+        __wbg_prototypesetcall_bdcdcc5842e4d77d: function(arg0, arg1, arg2) {
+            Uint8Array.prototype.set.call(getArrayU8FromWasm0(arg0, arg1), arg2);
+        },
+        __wbg_set_1eb0999cf5d27fc8: function(arg0, arg1, arg2) {
+            const ret = arg0.set(arg1, arg2);
+            return ret;
+        },
+        __wbg_set_3fda3bac07393de4: function(arg0, arg1, arg2) {
+            arg0[arg1] = arg2;
+        },
+        __wbg_set_f43e577aea94465b: function(arg0, arg1, arg2) {
+            arg0[arg1 >>> 0] = arg2;
+        },
+        __wbg_value_0546255b415e96c1: function(arg0) {
+            const ret = arg0.value;
+            return ret;
+        },
+        __wbindgen_cast_0000000000000001: function(arg0) {
+            // Cast intrinsic for `F64 -> Externref`.
+            const ret = arg0;
+            return ret;
+        },
+        __wbindgen_cast_0000000000000002: function(arg0, arg1) {
+            // Cast intrinsic for `Ref(String) -> Externref`.
+            const ret = getStringFromWasm0(arg0, arg1);
+            return ret;
+        },
+        __wbindgen_cast_0000000000000003: function(arg0) {
+            // Cast intrinsic for `U64 -> Externref`.
+            const ret = BigInt.asUintN(64, arg0);
+            return ret;
+        },
+        __wbindgen_init_externref_table: function() {
+            const table = wasm.__wbindgen_externrefs;
+            const offset = table.grow(4);
+            table.set(0, undefined);
+            table.set(offset + 0, undefined);
+            table.set(offset + 1, null);
+            table.set(offset + 2, true);
+            table.set(offset + 3, false);
+        },
+    };
+    return {
+        __proto__: null,
+        "./gtars_js_bg.js": import0,
+    };
+}
+
+const BedClassificationOutputFinalization = (typeof FinalizationRegistry === 'undefined')
+    ? { register: () => {}, unregister: () => {} }
+    : new FinalizationRegistry(ptr => wasm.__wbg_bedclassificationoutput_free(ptr >>> 0, 1));
+const ChromosomeStatisticsFinalization = (typeof FinalizationRegistry === 'undefined')
+    ? { register: () => {}, unregister: () => {} }
+    : new FinalizationRegistry(ptr => wasm.__wbg_chromosomestatistics_free(ptr >>> 0, 1));
+const OverlapperFinalization = (typeof FinalizationRegistry === 'undefined')
+    ? { register: () => {}, unregister: () => {} }
+    : new FinalizationRegistry(ptr => wasm.__wbg_overlapper_free(ptr >>> 0, 1));
+const RegionDistributionFinalization = (typeof FinalizationRegistry === 'undefined')
+    ? { register: () => {}, unregister: () => {} }
+    : new FinalizationRegistry(ptr => wasm.__wbg_regiondistribution_free(ptr >>> 0, 1));
+const RegionSetFinalization = (typeof FinalizationRegistry === 'undefined')
+    ? { register: () => {}, unregister: () => {} }
+    : new FinalizationRegistry(ptr => wasm.__wbg_regionset_free(ptr >>> 0, 1));
+const TokenizerFinalization = (typeof FinalizationRegistry === 'undefined')
+    ? { register: () => {}, unregister: () => {} }
+    : new FinalizationRegistry(ptr => wasm.__wbg_tokenizer_free(ptr >>> 0, 1));
+
+function addToExternrefTable0(obj) {
+    const idx = wasm.__externref_table_alloc();
+    wasm.__wbindgen_externrefs.set(idx, obj);
+    return idx;
+}
+
+function debugString(val) {
+    // primitive types
+    const type = typeof val;
+    if (type == 'number' || type == 'boolean' || val == null) {
+        return  `${val}`;
+    }
+    if (type == 'string') {
+        return `"${val}"`;
+    }
+    if (type == 'symbol') {
+        const description = val.description;
+        if (description == null) {
+            return 'Symbol';
+        } else {
+            return `Symbol(${description})`;
         }
-        return takeFromExternrefTable0(ret[0]);
     }
-    /**
-     * @returns {any}
-     */
-    getVocab() {
-        const ret = wasm.tokenizer_getVocab(this.__wbg_ptr);
-        if (ret[2]) {
-            throw takeFromExternrefTable0(ret[1]);
+    if (type == 'function') {
+        const name = val.name;
+        if (typeof name == 'string' && name.length > 0) {
+            return `Function(${name})`;
+        } else {
+            return 'Function';
         }
-        return takeFromExternrefTable0(ret[0]);
     }
-    /**
-     * @returns {number}
-     */
-    get length() {
-        const ret = wasm.tokenizer_length(this.__wbg_ptr);
-        return ret >>> 0;
+    // objects
+    if (Array.isArray(val)) {
+        const length = val.length;
+        let debug = '[';
+        if (length > 0) {
+            debug += debugString(val[0]);
+        }
+        for(let i = 1; i < length; i++) {
+            debug += ', ' + debugString(val[i]);
+        }
+        debug += ']';
+        return debug;
     }
+    // Test for built-in
+    const builtInMatches = /\[object ([^\]]+)\]/.exec(toString.call(val));
+    let className;
+    if (builtInMatches && builtInMatches.length > 1) {
+        className = builtInMatches[1];
+    } else {
+        // Failed to match the standard '[object ClassName]'
+        return toString.call(val);
+    }
+    if (className == 'Object') {
+        // we're a user defined class or Object
+        // JSON.stringify avoids problems with cycles, and is generally much
+        // easier than looping through ownProperties of `val`.
+        try {
+            return 'Object(' + JSON.stringify(val) + ')';
+        } catch (_) {
+            return 'Object';
+        }
+    }
+    // errors
+    if (val instanceof Error) {
+        return `${val.name}: ${val.message}\n${val.stack}`;
+    }
+    // TODO we could test for more things here, like `Set`s and `Map`s.
+    return className;
+}
+
+function getArrayU8FromWasm0(ptr, len) {
+    ptr = ptr >>> 0;
+    return getUint8ArrayMemory0().subarray(ptr / 1, ptr / 1 + len);
+}
+
+let cachedDataViewMemory0 = null;
+function getDataViewMemory0() {
+    if (cachedDataViewMemory0 === null || cachedDataViewMemory0.buffer.detached === true || (cachedDataViewMemory0.buffer.detached === undefined && cachedDataViewMemory0.buffer !== wasm.memory.buffer)) {
+        cachedDataViewMemory0 = new DataView(wasm.memory.buffer);
+    }
+    return cachedDataViewMemory0;
+}
+
+function getStringFromWasm0(ptr, len) {
+    ptr = ptr >>> 0;
+    return decodeText(ptr, len);
+}
+
+let cachedUint8ArrayMemory0 = null;
+function getUint8ArrayMemory0() {
+    if (cachedUint8ArrayMemory0 === null || cachedUint8ArrayMemory0.byteLength === 0) {
+        cachedUint8ArrayMemory0 = new Uint8Array(wasm.memory.buffer);
+    }
+    return cachedUint8ArrayMemory0;
+}
+
+function handleError(f, args) {
+    try {
+        return f.apply(this, args);
+    } catch (e) {
+        const idx = addToExternrefTable0(e);
+        wasm.__wbindgen_exn_store(idx);
+    }
+}
+
+function isLikeNone(x) {
+    return x === undefined || x === null;
+}
+
+function passArray8ToWasm0(arg, malloc) {
+    const ptr = malloc(arg.length * 1, 1) >>> 0;
+    getUint8ArrayMemory0().set(arg, ptr / 1);
+    WASM_VECTOR_LEN = arg.length;
+    return ptr;
+}
+
+function passStringToWasm0(arg, malloc, realloc) {
+    if (realloc === undefined) {
+        const buf = cachedTextEncoder.encode(arg);
+        const ptr = malloc(buf.length, 1) >>> 0;
+        getUint8ArrayMemory0().subarray(ptr, ptr + buf.length).set(buf);
+        WASM_VECTOR_LEN = buf.length;
+        return ptr;
+    }
+
+    let len = arg.length;
+    let ptr = malloc(len, 1) >>> 0;
+
+    const mem = getUint8ArrayMemory0();
+
+    let offset = 0;
+
+    for (; offset < len; offset++) {
+        const code = arg.charCodeAt(offset);
+        if (code > 0x7F) break;
+        mem[ptr + offset] = code;
+    }
+    if (offset !== len) {
+        if (offset !== 0) {
+            arg = arg.slice(offset);
+        }
+        ptr = realloc(ptr, len, len = offset + arg.length * 3, 1) >>> 0;
+        const view = getUint8ArrayMemory0().subarray(ptr + offset, ptr + len);
+        const ret = cachedTextEncoder.encodeInto(arg, view);
+
+        offset += ret.written;
+        ptr = realloc(ptr, len, offset, 1) >>> 0;
+    }
+
+    WASM_VECTOR_LEN = offset;
+    return ptr;
+}
+
+function takeFromExternrefTable0(idx) {
+    const value = wasm.__wbindgen_externrefs.get(idx);
+    wasm.__externref_table_dealloc(idx);
+    return value;
 }
-if (Symbol.dispose) Tokenizer.prototype[Symbol.dispose] = Tokenizer.prototype.free;
 
-const EXPECTED_RESPONSE_TYPES = new Set(['basic', 'cors', 'default']);
+let cachedTextDecoder = new TextDecoder('utf-8', { ignoreBOM: true, fatal: true });
+cachedTextDecoder.decode();
+const MAX_SAFARI_DECODE_BYTES = 2146435072;
+let numBytesDecoded = 0;
+function decodeText(ptr, len) {
+    numBytesDecoded += len;
+    if (numBytesDecoded >= MAX_SAFARI_DECODE_BYTES) {
+        cachedTextDecoder = new TextDecoder('utf-8', { ignoreBOM: true, fatal: true });
+        cachedTextDecoder.decode();
+        numBytesDecoded = len;
+    }
+    return cachedTextDecoder.decode(getUint8ArrayMemory0().subarray(ptr, ptr + len));
+}
+
+const cachedTextEncoder = new TextEncoder();
+
+if (!('encodeInto' in cachedTextEncoder)) {
+    cachedTextEncoder.encodeInto = function (arg, view) {
+        const buf = cachedTextEncoder.encode(arg);
+        view.set(buf);
+        return {
+            read: arg.length,
+            written: buf.length
+        };
+    };
+}
+
+let WASM_VECTOR_LEN = 0;
+
+let wasmModule, wasm;
+function __wbg_finalize_init(instance, module) {
+    wasm = instance.exports;
+    wasmModule = module;
+    cachedDataViewMemory0 = null;
+    cachedUint8ArrayMemory0 = null;
+    wasm.__wbindgen_start();
+    return wasm;
+}
 
 async function __wbg_load(module, imports) {
     if (typeof Response === 'function' && module instanceof Response) {
         if (typeof WebAssembly.instantiateStreaming === 'function') {
             try {
                 return await WebAssembly.instantiateStreaming(module, imports);
-
             } catch (e) {
-                const validResponse = module.ok && EXPECTED_RESPONSE_TYPES.has(module.type);
+                const validResponse = module.ok && expectedResponseType(module.type);
 
                 if (validResponse && module.headers.get('Content-Type') !== 'application/wasm') {
                     console.warn("`WebAssembly.instantiateStreaming` failed because your server does not serve Wasm with `application/wasm` MIME type. Falling back to `WebAssembly.instantiate` which is slower. Original error:\n", e);
 
-                } else {
-                    throw e;
-                }
+                } else { throw e; }
             }
         }
 
         const bytes = await module.arrayBuffer();
         return await WebAssembly.instantiate(bytes, imports);
-
     } else {
         const instance = await WebAssembly.instantiate(module, imports);
 
         if (instance instanceof WebAssembly.Instance) {
             return { instance, module };
-
         } else {
             return instance;
         }
     }
-}
 
-function __wbg_get_imports() {
-    const imports = {};
-    imports.wbg = {};
-    imports.wbg.__wbg_Error_e83987f665cf5504 = function(arg0, arg1) {
-        const ret = Error(getStringFromWasm0(arg0, arg1));
-        return ret;
-    };
-    imports.wbg.__wbg_String_fed4d24b68977888 = function(arg0, arg1) {
-        const ret = String(arg1);
-        const ptr1 = passStringToWasm0(ret, wasm.__wbindgen_malloc, wasm.__wbindgen_realloc);
-        const len1 = WASM_VECTOR_LEN;
-        getDataViewMemory0().setInt32(arg0 + 4 * 1, len1, true);
-        getDataViewMemory0().setInt32(arg0 + 4 * 0, ptr1, true);
-    };
-    imports.wbg.__wbg___wbindgen_boolean_get_6d5a1ee65bab5f68 = function(arg0) {
-        const v = arg0;
-        const ret = typeof(v) === 'boolean' ? v : undefined;
-        return isLikeNone(ret) ? 0xFFFFFF : ret ? 1 : 0;
-    };
-    imports.wbg.__wbg___wbindgen_debug_string_df47ffb5e35e6763 = function(arg0, arg1) {
-        const ret = debugString(arg1);
-        const ptr1 = passStringToWasm0(ret, wasm.__wbindgen_malloc, wasm.__wbindgen_realloc);
-        const len1 = WASM_VECTOR_LEN;
-        getDataViewMemory0().setInt32(arg0 + 4 * 1, len1, true);
-        getDataViewMemory0().setInt32(arg0 + 4 * 0, ptr1, true);
-    };
-    imports.wbg.__wbg___wbindgen_is_function_ee8a6c5833c90377 = function(arg0) {
-        const ret = typeof(arg0) === 'function';
-        return ret;
-    };
-    imports.wbg.__wbg___wbindgen_is_object_c818261d21f283a4 = function(arg0) {
-        const val = arg0;
-        const ret = typeof(val) === 'object' && val !== null;
-        return ret;
-    };
-    imports.wbg.__wbg___wbindgen_is_string_fbb76cb2940daafd = function(arg0) {
-        const ret = typeof(arg0) === 'string';
-        return ret;
-    };
-    imports.wbg.__wbg___wbindgen_jsval_loose_eq_b664b38a2f582147 = function(arg0, arg1) {
-        const ret = arg0 == arg1;
-        return ret;
-    };
-    imports.wbg.__wbg___wbindgen_number_get_a20bf9b85341449d = function(arg0, arg1) {
-        const obj = arg1;
-        const ret = typeof(obj) === 'number' ? obj : undefined;
-        getDataViewMemory0().setFloat64(arg0 + 8 * 1, isLikeNone(ret) ? 0 : ret, true);
-        getDataViewMemory0().setInt32(arg0 + 4 * 0, !isLikeNone(ret), true);
-    };
-    imports.wbg.__wbg___wbindgen_string_get_e4f06c90489ad01b = function(arg0, arg1) {
-        const obj = arg1;
-        const ret = typeof(obj) === 'string' ? obj : undefined;
-        var ptr1 = isLikeNone(ret) ? 0 : passStringToWasm0(ret, wasm.__wbindgen_malloc, wasm.__wbindgen_realloc);
-        var len1 = WASM_VECTOR_LEN;
-        getDataViewMemory0().setInt32(arg0 + 4 * 1, len1, true);
-        getDataViewMemory0().setInt32(arg0 + 4 * 0, ptr1, true);
-    };
-    imports.wbg.__wbg___wbindgen_throw_b855445ff6a94295 = function(arg0, arg1) {
-        throw new Error(getStringFromWasm0(arg0, arg1));
-    };
-    imports.wbg.__wbg_alert_bc6302c5a36a6d7f = function(arg0, arg1) {
-        alert(getStringFromWasm0(arg0, arg1));
-    };
-    imports.wbg.__wbg_call_e762c39fa8ea36bf = function() { return handleError(function (arg0, arg1) {
-        const ret = arg0.call(arg1);
-        return ret;
-    }, arguments) };
-    imports.wbg.__wbg_done_2042aa2670fb1db1 = function(arg0) {
-        const ret = arg0.done;
-        return ret;
-    };
-    imports.wbg.__wbg_get_7bed016f185add81 = function(arg0, arg1) {
-        const ret = arg0[arg1 >>> 0];
-        return ret;
-    };
-    imports.wbg.__wbg_get_efcb449f58ec27c2 = function() { return handleError(function (arg0, arg1) {
-        const ret = Reflect.get(arg0, arg1);
-        return ret;
-    }, arguments) };
-    imports.wbg.__wbg_instanceof_ArrayBuffer_70beb1189ca63b38 = function(arg0) {
-        let result;
-        try {
-            result = arg0 instanceof ArrayBuffer;
-        } catch (_) {
-            result = false;
+    function expectedResponseType(type) {
+        switch (type) {
+            case 'basic': case 'cors': case 'default': return true;
         }
-        const ret = result;
-        return ret;
-    };
-    imports.wbg.__wbg_instanceof_Uint8Array_20c8e73002f7af98 = function(arg0) {
-        let result;
-        try {
-            result = arg0 instanceof Uint8Array;
-        } catch (_) {
-            result = false;
-        }
-        const ret = result;
-        return ret;
-    };
-    imports.wbg.__wbg_isArray_96e0af9891d0945d = function(arg0) {
-        const ret = Array.isArray(arg0);
-        return ret;
-    };
-    imports.wbg.__wbg_isSafeInteger_d216eda7911dde36 = function(arg0) {
-        const ret = Number.isSafeInteger(arg0);
-        return ret;
-    };
-    imports.wbg.__wbg_iterator_e5822695327a3c39 = function() {
-        const ret = Symbol.iterator;
-        return ret;
-    };
-    imports.wbg.__wbg_length_69bca3cb64fc8748 = function(arg0) {
-        const ret = arg0.length;
-        return ret;
-    };
-    imports.wbg.__wbg_length_cdd215e10d9dd507 = function(arg0) {
-        const ret = arg0.length;
-        return ret;
-    };
-    imports.wbg.__wbg_new_1acc0b6eea89d040 = function() {
-        const ret = new Object();
-        return ret;
-    };
-    imports.wbg.__wbg_new_5a79be3ab53b8aa5 = function(arg0) {
-        const ret = new Uint8Array(arg0);
-        return ret;
-    };
-    imports.wbg.__wbg_new_68651c719dcda04e = function() {
-        const ret = new Map();
-        return ret;
-    };
-    imports.wbg.__wbg_new_e17d9f43105b08be = function() {
-        const ret = new Array();
-        return ret;
-    };
-    imports.wbg.__wbg_next_020810e0ae8ebcb0 = function() { return handleError(function (arg0) {
-        const ret = arg0.next();
-        return ret;
-    }, arguments) };
-    imports.wbg.__wbg_next_2c826fe5dfec6b6a = function(arg0) {
-        const ret = arg0.next;
-        return ret;
-    };
-    imports.wbg.__wbg_prototypesetcall_2a6620b6922694b2 = function(arg0, arg1, arg2) {
-        Uint8Array.prototype.set.call(getArrayU8FromWasm0(arg0, arg1), arg2);
-    };
-    imports.wbg.__wbg_set_3fda3bac07393de4 = function(arg0, arg1, arg2) {
-        arg0[arg1] = arg2;
-    };
-    imports.wbg.__wbg_set_907fb406c34a251d = function(arg0, arg1, arg2) {
-        const ret = arg0.set(arg1, arg2);
-        return ret;
-    };
-    imports.wbg.__wbg_set_c213c871859d6500 = function(arg0, arg1, arg2) {
-        arg0[arg1 >>> 0] = arg2;
-    };
-    imports.wbg.__wbg_value_692627309814bb8c = function(arg0) {
-        const ret = arg0.value;
-        return ret;
-    };
-    imports.wbg.__wbindgen_cast_2241b6af4c4b2941 = function(arg0, arg1) {
-        // Cast intrinsic for `Ref(String) -> Externref`.
-        const ret = getStringFromWasm0(arg0, arg1);
-        return ret;
-    };
-    imports.wbg.__wbindgen_cast_d6cd19b81560fd6e = function(arg0) {
-        // Cast intrinsic for `F64 -> Externref`.
-        const ret = arg0;
-        return ret;
-    };
-    imports.wbg.__wbindgen_init_externref_table = function() {
-        const table = wasm.__wbindgen_externrefs;
-        const offset = table.grow(4);
-        table.set(0, undefined);
-        table.set(offset + 0, undefined);
-        table.set(offset + 1, null);
-        table.set(offset + 2, true);
-        table.set(offset + 3, false);
-        ;
-    };
-
-    return imports;
-}
-
-function __wbg_finalize_init(instance, module) {
-    wasm = instance.exports;
-    __wbg_init.__wbindgen_wasm_module = module;
-    cachedDataViewMemory0 = null;
-    cachedUint8ArrayMemory0 = null;
-
-
-    wasm.__wbindgen_start();
-    return wasm;
+        return false;
+    }
 }
 
 function initSync(module) {
     if (wasm !== undefined) return wasm;
 
 
-    if (typeof module !== 'undefined') {
+    if (module !== undefined) {
         if (Object.getPrototypeOf(module) === Object.prototype) {
             ({module} = module)
         } else {
@@ -949,13 +1352,10 @@ function initSync(module) {
     }
 
     const imports = __wbg_get_imports();
-
     if (!(module instanceof WebAssembly.Module)) {
         module = new WebAssembly.Module(module);
     }
-
     const instance = new WebAssembly.Instance(module, imports);
-
     return __wbg_finalize_init(instance, module);
 }
 
@@ -963,7 +1363,7 @@ async function __wbg_init(module_or_path) {
     if (wasm !== undefined) return wasm;
 
 
-    if (typeof module_or_path !== 'undefined') {
+    if (module_or_path !== undefined) {
         if (Object.getPrototypeOf(module_or_path) === Object.prototype) {
             ({module_or_path} = module_or_path)
         } else {
@@ -971,7 +1371,7 @@ async function __wbg_init(module_or_path) {
         }
     }
 
-    if (typeof module_or_path === 'undefined') {
+    if (module_or_path === undefined) {
         module_or_path = new URL('gtars_js_bg.wasm', import.meta.url);
     }
     const imports = __wbg_get_imports();
@@ -985,5 +1385,4 @@ async function __wbg_init(module_or_path) {
     return __wbg_finalize_init(instance, module);
 }
 
-export { initSync };
-export default __wbg_init;
+export { initSync, __wbg_init as default };