@databio/gtars 0.5.2 → 0.5.3

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (4) hide show
  1. package/gtars_js.d.ts +148 -122
  2. package/gtars_js.js +670 -602
  3. package/gtars_js_bg.wasm +0 -0
  4. package/package.json +1 -1
package/gtars_js.d.ts CHANGED
@@ -1,146 +1,172 @@
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  /* tslint:disable */
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  /* eslint-disable */
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- export function greet(name: string): void;
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+
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+ export class BedClassificationOutput {
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+ private constructor();
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+ free(): void;
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+ [Symbol.dispose](): void;
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+ readonly bed_compliance: string;
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+ readonly compliant_columns: number;
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+ readonly data_format: string;
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+ readonly non_compliant_columns: number;
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+ }
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+
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  export class ChromosomeStatistics {
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- private constructor();
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- free(): void;
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- [Symbol.dispose](): void;
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- readonly chromosome: string;
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- readonly start_nucleotide_position: number;
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- readonly end_nucleotide_position: number;
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- readonly number_of_regions: number;
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- readonly minimum_region_length: number;
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- readonly maximum_region_length: number;
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- readonly mean_region_length: number;
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- readonly median_region_length: number;
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+ private constructor();
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+ free(): void;
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+ [Symbol.dispose](): void;
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+ readonly chromosome: string;
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+ readonly end_nucleotide_position: number;
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+ readonly maximum_region_length: number;
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+ readonly mean_region_length: number;
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+ readonly median_region_length: number;
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+ readonly minimum_region_length: number;
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+ readonly number_of_regions: number;
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+ readonly start_nucleotide_position: number;
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  }
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+
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  export class Overlapper {
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- free(): void;
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- [Symbol.dispose](): void;
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- constructor(universe: any, backend: string);
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- get_backend(): string;
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- find(regions: any): any;
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+ free(): void;
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+ [Symbol.dispose](): void;
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+ find(regions: any): any;
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+ get_backend(): string;
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+ constructor(universe: any, backend: string);
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  }
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+
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  export class RegionDistribution {
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- private constructor();
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- free(): void;
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- [Symbol.dispose](): void;
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+ private constructor();
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+ free(): void;
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+ [Symbol.dispose](): void;
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  }
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+
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  export class RegionSet {
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- free(): void;
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- [Symbol.dispose](): void;
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- constructor(regions: any);
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- chromosomeStatistics(): any;
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- regionDistribution(n_bins: number): any;
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- readonly numberOfRegions: number;
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- readonly meanRegionWidth: number;
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- readonly nucleotidesLength: number;
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- readonly identifier: string;
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+ free(): void;
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+ [Symbol.dispose](): void;
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+ chromosomeStatistics(): any;
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+ constructor(regions: any);
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+ regionDistribution(n_bins: number): any;
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+ readonly classify: BedClassificationOutput;
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+ readonly firstRegion: string;
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+ readonly identifier: string;
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+ readonly meanRegionWidth: number;
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+ readonly nucleotidesLength: number;
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+ readonly numberOfRegions: number;
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  }
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+
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  export class Tokenizer {
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- free(): void;
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- [Symbol.dispose](): void;
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- constructor(universe: any, backend: string);
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- tokenize(regions: any): any;
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- encode(tokens: any): any;
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- decode(ids: any): any;
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- specialTokensMap(): any;
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- getVocab(): any;
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- readonly unkToken: string;
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- readonly padToken: string;
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- readonly maskToken: string;
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- readonly clsToken: string;
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- readonly bosToken: string;
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- readonly eosToken: string;
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- readonly sepToken: string;
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- readonly padTokenId: number;
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- readonly maskTokenId: number;
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- readonly clsTokenId: number;
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- readonly bosTokenId: number;
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- readonly eosTokenId: number;
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- readonly sepTokenId: number;
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- readonly unkTokenId: number;
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- readonly vocabSize: number;
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- readonly length: number;
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+ free(): void;
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+ [Symbol.dispose](): void;
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+ decode(ids: any): any;
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+ encode(tokens: any): any;
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+ getVocab(): any;
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+ constructor(universe: any, backend: string);
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+ specialTokensMap(): any;
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+ tokenize(regions: any): any;
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+ readonly bosToken: string;
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+ readonly bosTokenId: number;
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+ readonly clsToken: string;
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+ readonly clsTokenId: number;
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+ readonly eosToken: string;
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+ readonly eosTokenId: number;
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+ readonly length: number;
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+ readonly maskToken: string;
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+ readonly maskTokenId: number;
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+ readonly padToken: string;
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+ readonly padTokenId: number;
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+ readonly sepToken: string;
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+ readonly sepTokenId: number;
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+ readonly unkToken: string;
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+ readonly unkTokenId: number;
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+ readonly vocabSize: number;
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  }
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82
 
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+ export function greet(name: string): void;
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+
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  export type InitInput = RequestInfo | URL | Response | BufferSource | WebAssembly.Module;
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  export interface InitOutput {
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- readonly memory: WebAssembly.Memory;
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- readonly __wbg_tokenizer_free: (a: number, b: number) => void;
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- readonly tokenizer_new: (a: any, b: number, c: number) => [number, number, number];
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- readonly tokenizer_tokenize: (a: number, b: any) => [number, number, number];
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- readonly tokenizer_encode: (a: number, b: any) => [number, number, number];
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- readonly tokenizer_decode: (a: number, b: any) => [number, number, number];
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- readonly tokenizer_unkToken: (a: number) => [number, number];
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- readonly tokenizer_padToken: (a: number) => [number, number];
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- readonly tokenizer_maskToken: (a: number) => [number, number];
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- readonly tokenizer_clsToken: (a: number) => [number, number];
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- readonly tokenizer_bosToken: (a: number) => [number, number];
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- readonly tokenizer_eosToken: (a: number) => [number, number];
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- readonly tokenizer_sepToken: (a: number) => [number, number];
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- readonly tokenizer_padTokenId: (a: number) => number;
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- readonly tokenizer_maskTokenId: (a: number) => number;
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- readonly tokenizer_clsTokenId: (a: number) => number;
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- readonly tokenizer_bosTokenId: (a: number) => number;
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- readonly tokenizer_eosTokenId: (a: number) => number;
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- readonly tokenizer_sepTokenId: (a: number) => number;
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- readonly tokenizer_unkTokenId: (a: number) => number;
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- readonly tokenizer_specialTokensMap: (a: number) => [number, number, number];
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- readonly tokenizer_getVocab: (a: number) => [number, number, number];
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- readonly tokenizer_length: (a: number) => number;
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- readonly tokenizer_vocabSize: (a: number) => number;
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- readonly __wbg_chromosomestatistics_free: (a: number, b: number) => void;
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- readonly chromosomestatistics_chromosome: (a: number) => [number, number];
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- readonly chromosomestatistics_start_nucleotide_position: (a: number) => number;
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- readonly chromosomestatistics_end_nucleotide_position: (a: number) => number;
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- readonly chromosomestatistics_number_of_regions: (a: number) => number;
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- readonly chromosomestatistics_minimum_region_length: (a: number) => number;
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- readonly chromosomestatistics_maximum_region_length: (a: number) => number;
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- readonly chromosomestatistics_mean_region_length: (a: number) => number;
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- readonly chromosomestatistics_median_region_length: (a: number) => number;
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- readonly __wbg_regiondistribution_free: (a: number, b: number) => void;
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- readonly __wbg_regionset_free: (a: number, b: number) => void;
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- readonly regionset_new: (a: any) => [number, number, number];
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- readonly regionset_numberOfRegions: (a: number) => number;
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- readonly regionset_meanRegionWidth: (a: number) => number;
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- readonly regionset_nucleotidesLength: (a: number) => number;
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- readonly regionset_identifier: (a: number) => [number, number];
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- readonly regionset_chromosomeStatistics: (a: number) => [number, number, number];
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- readonly regionset_regionDistribution: (a: number, b: number) => [number, number, number];
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- readonly __wbg_overlapper_free: (a: number, b: number) => void;
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- readonly overlapper_new: (a: any, b: number, c: number) => [number, number, number];
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- readonly overlapper_get_backend: (a: number) => [number, number];
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- readonly overlapper_find: (a: number, b: any) => [number, number, number];
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- readonly greet: (a: number, b: number) => void;
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- readonly __wbindgen_malloc: (a: number, b: number) => number;
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- readonly __wbindgen_realloc: (a: number, b: number, c: number, d: number) => number;
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- readonly __wbindgen_exn_store: (a: number) => void;
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- readonly __externref_table_alloc: () => number;
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- readonly __wbindgen_externrefs: WebAssembly.Table;
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- readonly __externref_table_dealloc: (a: number) => void;
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- readonly __wbindgen_free: (a: number, b: number, c: number) => void;
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- readonly __wbindgen_start: () => void;
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+ readonly memory: WebAssembly.Memory;
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+ readonly __wbg_bedclassificationoutput_free: (a: number, b: number) => void;
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+ readonly __wbg_chromosomestatistics_free: (a: number, b: number) => void;
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+ readonly __wbg_regiondistribution_free: (a: number, b: number) => void;
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+ readonly __wbg_regionset_free: (a: number, b: number) => void;
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+ readonly bedclassificationoutput_bed_compliance: (a: number) => [number, number];
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+ readonly bedclassificationoutput_compliant_columns: (a: number) => number;
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+ readonly bedclassificationoutput_data_format: (a: number) => [number, number];
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+ readonly bedclassificationoutput_non_compliant_columns: (a: number) => number;
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+ readonly chromosomestatistics_chromosome: (a: number) => [number, number];
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+ readonly chromosomestatistics_end_nucleotide_position: (a: number) => number;
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+ readonly chromosomestatistics_maximum_region_length: (a: number) => number;
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+ readonly chromosomestatistics_mean_region_length: (a: number) => number;
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+ readonly chromosomestatistics_median_region_length: (a: number) => number;
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+ readonly chromosomestatistics_number_of_regions: (a: number) => number;
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+ readonly chromosomestatistics_start_nucleotide_position: (a: number) => number;
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+ readonly regionset_chromosomeStatistics: (a: number) => [number, number, number];
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+ readonly regionset_classify: (a: number) => number;
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+ readonly regionset_firstRegion: (a: number) => [number, number];
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+ readonly regionset_identifier: (a: number) => [number, number];
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+ readonly regionset_meanRegionWidth: (a: number) => number;
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+ readonly regionset_new: (a: any) => [number, number, number];
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+ readonly regionset_nucleotidesLength: (a: number) => number;
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+ readonly regionset_numberOfRegions: (a: number) => number;
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+ readonly regionset_regionDistribution: (a: number, b: number) => [number, number, number];
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+ readonly chromosomestatistics_minimum_region_length: (a: number) => number;
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+ readonly __wbg_tokenizer_free: (a: number, b: number) => void;
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+ readonly tokenizer_bosToken: (a: number) => [number, number];
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+ readonly tokenizer_bosTokenId: (a: number) => number;
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+ readonly tokenizer_clsToken: (a: number) => [number, number];
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+ readonly tokenizer_clsTokenId: (a: number) => number;
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+ readonly tokenizer_decode: (a: number, b: any) => [number, number, number];
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+ readonly tokenizer_encode: (a: number, b: any) => [number, number, number];
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+ readonly tokenizer_eosToken: (a: number) => [number, number];
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+ readonly tokenizer_eosTokenId: (a: number) => number;
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+ readonly tokenizer_getVocab: (a: number) => [number, number, number];
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+ readonly tokenizer_length: (a: number) => number;
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+ readonly tokenizer_maskToken: (a: number) => [number, number];
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+ readonly tokenizer_maskTokenId: (a: number) => number;
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+ readonly tokenizer_new: (a: any, b: number, c: number) => [number, number, number];
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+ readonly tokenizer_padToken: (a: number) => [number, number];
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+ readonly tokenizer_padTokenId: (a: number) => number;
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+ readonly tokenizer_sepToken: (a: number) => [number, number];
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+ readonly tokenizer_sepTokenId: (a: number) => number;
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+ readonly tokenizer_specialTokensMap: (a: number) => [number, number, number];
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+ readonly tokenizer_tokenize: (a: number, b: any) => [number, number, number];
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+ readonly tokenizer_unkToken: (a: number) => [number, number];
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+ readonly tokenizer_unkTokenId: (a: number) => number;
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+ readonly tokenizer_vocabSize: (a: number) => number;
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+ readonly __wbg_overlapper_free: (a: number, b: number) => void;
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+ readonly overlapper_find: (a: number, b: any) => [number, number, number];
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+ readonly overlapper_get_backend: (a: number) => [number, number];
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+ readonly overlapper_new: (a: any, b: number, c: number) => [number, number, number];
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+ readonly greet: (a: number, b: number) => void;
142
+ readonly __wbindgen_malloc: (a: number, b: number) => number;
143
+ readonly __wbindgen_realloc: (a: number, b: number, c: number, d: number) => number;
144
+ readonly __wbindgen_exn_store: (a: number) => void;
145
+ readonly __externref_table_alloc: () => number;
146
+ readonly __wbindgen_externrefs: WebAssembly.Table;
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+ readonly __wbindgen_free: (a: number, b: number, c: number) => void;
148
+ readonly __externref_table_dealloc: (a: number) => void;
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+ readonly __wbindgen_start: () => void;
125
150
  }
126
151
 
127
152
  export type SyncInitInput = BufferSource | WebAssembly.Module;
153
+
128
154
  /**
129
- * Instantiates the given `module`, which can either be bytes or
130
- * a precompiled `WebAssembly.Module`.
131
- *
132
- * @param {{ module: SyncInitInput }} module - Passing `SyncInitInput` directly is deprecated.
133
- *
134
- * @returns {InitOutput}
135
- */
155
+ * Instantiates the given `module`, which can either be bytes or
156
+ * a precompiled `WebAssembly.Module`.
157
+ *
158
+ * @param {{ module: SyncInitInput }} module - Passing `SyncInitInput` directly is deprecated.
159
+ *
160
+ * @returns {InitOutput}
161
+ */
136
162
  export function initSync(module: { module: SyncInitInput } | SyncInitInput): InitOutput;
137
163
 
138
164
  /**
139
- * If `module_or_path` is {RequestInfo} or {URL}, makes a request and
140
- * for everything else, calls `WebAssembly.instantiate` directly.
141
- *
142
- * @param {{ module_or_path: InitInput | Promise<InitInput> }} module_or_path - Passing `InitInput` directly is deprecated.
143
- *
144
- * @returns {Promise<InitOutput>}
145
- */
165
+ * If `module_or_path` is {RequestInfo} or {URL}, makes a request and
166
+ * for everything else, calls `WebAssembly.instantiate` directly.
167
+ *
168
+ * @param {{ module_or_path: InitInput | Promise<InitInput> }} module_or_path - Passing `InitInput` directly is deprecated.
169
+ *
170
+ * @returns {Promise<InitOutput>}
171
+ */
146
172
  export default function __wbg_init (module_or_path?: { module_or_path: InitInput | Promise<InitInput> } | InitInput | Promise<InitInput>): Promise<InitOutput>;