@danielmarbach/mnemonic-mcp 0.27.2 → 0.29.0

package/build/tools/consolidate-helpers.js

@@ -0,0 +1,815 @@
+import { aggregateMergeRisk, buildConsolidateNoteEvidence, buildGroupWarnings, mergeRelationshipsFromNotes, normalizeMergePlanSourceIds, resolveEffectiveConsolidationMode, } from "../consolidate.js";
+import { cosineSimilarity, embed, embedModel } from "../embeddings.js";
+import { classifyTheme, titleCaseTheme } from "../project-introspection.js";
+import { getErrorMessage, attempt } from "../error-utils.js";
+import { makeId, slugify } from "../helpers/index.js";
+import { memoryId, isoDateString } from "../brands.js";
+import { formatCommitBody, shouldBlockProtectedBranchCommit as shouldBlockProtectedBranchCommitFromModule, wouldRelationshipCleanupTouchProjectVault as wouldRelationshipCleanupTouchProjectVaultFromModule } from "../helpers/git-commit.js";
+import { buildPersistenceStatus, buildMutationRetryContract, formatPersistenceSummary, pushAfterMutation as pushAfterMutationFromModule } from "../helpers/persistence.js";
+import { storageLabel, addVaultChange, removeRelationshipsToNoteIds as removeRelationshipsToNoteIdsFromModule } from "../helpers/vault.js";
+import { toProjectRef } from "../helpers/project.js";
+import { embedTextForNote as embedTextForNoteFromModule } from "../helpers/embed.js";
+import { UnknownConsolidationModeError } from "../domain-errors.js";
+// Re-export helpers that close over ctx for convenience
+async function shouldBlockProtectedBranchCommit(ctx, options) {
+    return shouldBlockProtectedBranchCommitFromModule({ ctx, ...options });
+}
+async function wouldRelationshipCleanupTouchProjectVault(ctx, noteIds) {
+    return wouldRelationshipCleanupTouchProjectVaultFromModule(ctx, noteIds);
+}
+async function pushAfterMutation(ctx, vault) {
+    return pushAfterMutationFromModule(ctx, vault);
+}
+async function removeRelationshipsToNoteIds(ctx, noteIds) {
+    return removeRelationshipsToNoteIdsFromModule(ctx, noteIds);
+}
+async function embedTextForNote(storage, note) {
+    return embedTextForNoteFromModule(storage, note);
+}
+// ── Consolidate helper functions ────────────────────────────────────────────
+export async function detectDuplicates(entries, threshold, project, evidence) {
+    const lines = [];
+    lines.push(`Duplicate detection for ${project?.name ?? "global"} (similarity > ${threshold}):`);
+    lines.push("");
+    const checked = new Set();
+    let foundCount = 0;
+    const duplicates = [];
+    const duplicatePairs = [];
+    const embeddings = await loadEmbeddingsByNoteId(entries);
+    const allNotes = entries.map((entry) => entry.note);
+    for (let i = 0; i < entries.length; i++) {
+        const entryA = entries[i];
+        if (checked.has(entryA.note.id))
+            continue;
+        const embeddingA = embeddings.get(entryA.note.id);
+        if (!embeddingA)
+            continue;
+        for (let j = i + 1; j < entries.length; j++) {
+            const entryB = entries[j];
+            if (checked.has(entryB.note.id))
+                continue;
+            const embeddingB = embeddings.get(entryB.note.id);
+            if (!embeddingB)
+                continue;
+            const similarity = cosineSimilarity(embeddingA, embeddingB);
+            if (similarity >= threshold) {
+                const noteAEvidence = buildConsolidateNoteEvidence(entryA.note, allNotes, entryA.note);
+                const noteBEvidence = buildConsolidateNoteEvidence(entryB.note, allNotes, entryA.note);
+                const groupWarnings = buildGroupWarnings([entryA.note, entryB.note], entryA.note);
+                const pairRisk = aggregateMergeRisk([noteAEvidence.mergeRisk, noteBEvidence.mergeRisk]);
+                foundCount++;
+                lines.push(`${foundCount}. ${entryA.note.title} (${entryA.note.id})`);
+                lines.push(`   └── ${entryB.note.title} (${entryB.note.id})`);
+                lines.push(`   Similarity: ${similarity.toFixed(3)}`);
+                if (evidence) {
+                    lines.push(`   A: ${noteAEvidence.lifecycle}, ${noteAEvidence.role ?? "untyped"} | ${Math.round(noteAEvidence.ageDays)}d old | rel: ${noteAEvidence.relatedCount} | supersedes: ${noteAEvidence.supersededCount ?? 0} | risk: ${noteAEvidence.mergeRisk}`);
+                    lines.push(`   B: ${noteBEvidence.lifecycle}, ${noteBEvidence.role ?? "untyped"} | ${Math.round(noteBEvidence.ageDays)}d old | rel: ${noteBEvidence.relatedCount} | supersedes: ${noteBEvidence.supersededCount ?? 0} | risk: ${noteBEvidence.mergeRisk}`);
+                    if (groupWarnings.length > 0) {
+                        lines.push(`   Warnings: ${groupWarnings.join("; ")}`);
+                    }
+                    lines.push(`   Merge risk: ${pairRisk}`);
+                }
+                lines.push("");
+                checked.add(entryA.note.id);
+                checked.add(entryB.note.id);
+                duplicates.push({
+                    noteA: { id: entryA.note.id, title: entryA.note.title },
+                    noteB: { id: entryB.note.id, title: entryB.note.title },
+                    similarity,
+                });
+                if (evidence) {
+                    duplicatePairs.push({
+                        similarity,
+                        noteA: noteAEvidence,
+                        noteB: noteBEvidence,
+                        warnings: groupWarnings.length > 0 ? groupWarnings : undefined,
+                        mergeRisk: pairRisk,
+                    });
+                }
+            }
+        }
+    }
+    if (foundCount === 0) {
+        lines.push("No duplicates found above the similarity threshold.");
+    }
+    else {
+        lines.push(`Found ${foundCount} potential duplicate pair(s).`);
+        lines.push("Use 'suggest-merges' strategy for actionable recommendations.");
+    }
+    const structuredContent = {
+        action: "consolidated",
+        strategy: "detect-duplicates",
+        project: toProjectRef(project),
+        notesProcessed: entries.length,
+        notesModified: 0,
+        duplicatePairs: evidence ? duplicatePairs : undefined,
+    };
+    return { content: [{ type: "text", text: lines.join("\n") }], structuredContent };
+}
+export function findClusters(entries, project) {
+    const lines = [];
+    lines.push(`Cluster analysis for ${project?.name ?? "global"}:`);
+    lines.push("");
+    // Group by theme
+    const themed = new Map();
+    for (const entry of entries) {
+        const theme = classifyTheme(entry.note);
+        const bucket = themed.get(theme) ?? [];
+        bucket.push(entry);
+        themed.set(theme, bucket);
+    }
+    // Find relationship clusters
+    const idToEntry = new Map(entries.map((e) => [e.note.id, e]));
+    const visited = new Set();
+    const clusters = [];
+    for (const entry of entries) {
+        if (visited.has(entry.note.id))
+            continue;
+        const cluster = [];
+        const queue = [entry];
+        while (queue.length > 0) {
+            const current = queue.shift();
+            if (visited.has(current.note.id))
+                continue;
+            visited.add(current.note.id);
+            cluster.push(current);
+            // Add related notes to queue
+            for (const rel of current.note.relatedTo ?? []) {
+                const related = idToEntry.get(rel.id);
+                if (related && !visited.has(rel.id)) {
+                    queue.push(related);
+                }
+            }
+        }
+        if (cluster.length > 1) {
+            clusters.push(cluster);
+        }
+    }
+    // Output theme groups
+    const themeGroups = [];
+    lines.push("By Theme:");
+    for (const [theme, bucket] of themed) {
+        if (bucket.length > 1) {
+            lines.push(`  ${titleCaseTheme(theme)} (${bucket.length} notes)`);
+            const examples = bucket.slice(0, 3).map((entry) => entry.note.title);
+            for (const entry of bucket.slice(0, 3)) {
+                lines.push(`    - ${entry.note.title}`);
+            }
+            if (bucket.length > 3) {
+                lines.push(`    ... and ${bucket.length - 3} more`);
+            }
+            themeGroups.push({ name: theme, count: bucket.length, examples });
+        }
+    }
+    // Output relationship clusters
+    const relationshipClusters = [];
+    if (clusters.length > 0) {
+        lines.push("");
+        lines.push("Connected Clusters (via relationships):");
+        for (let i = 0; i < clusters.length; i++) {
+            const cluster = clusters[i];
+            lines.push(`  Cluster ${i + 1} (${cluster.length} notes):`);
+            const hub = cluster.reduce((max, e) => (e.note.relatedTo?.length ?? 0) > (max.note.relatedTo?.length ?? 0) ? e : max);
+            lines.push(`    Hub: ${hub.note.title}`);
+            const clusterNotes = [];
+            for (const entry of cluster) {
+                if (entry.note.id !== hub.note.id) {
+                    lines.push(`    - ${entry.note.title}`);
+                    clusterNotes.push({ id: entry.note.id, title: entry.note.title });
+                }
+            }
+            relationshipClusters.push({
+                hub: { id: hub.note.id, title: hub.note.title },
+                notes: clusterNotes,
+            });
+        }
+    }
+    const structuredContent = {
+        action: "consolidated",
+        strategy: "find-clusters",
+        project: toProjectRef(project),
+        notesProcessed: entries.length,
+        notesModified: 0,
+        themeGroups,
+        relationshipClusters,
+    };
+    return { content: [{ type: "text", text: lines.join("\n") }], structuredContent };
+}
+export async function suggestMerges(entries, threshold, defaultConsolidationMode, project, explicitMode, evidence = false) {
+    const lines = [];
+    const modeLabel = explicitMode ?? `${defaultConsolidationMode} (project/default; all-temporary merges auto-delete)`;
+    lines.push(`Merge suggestions for ${project?.name ?? "global"} (mode: ${modeLabel}):`);
+    lines.push("");
+    const checked = new Set();
+    let suggestionCount = 0;
+    const suggestions = [];
+    const mergeSuggestions = [];
+    const embeddings = await loadEmbeddingsByNoteId(entries);
+    const allNotes = entries.map((entry) => entry.note);
+    for (let i = 0; i < entries.length; i++) {
+        const entryA = entries[i];
+        if (checked.has(entryA.note.id))
+            continue;
+        const embeddingA = embeddings.get(entryA.note.id);
+        if (!embeddingA)
+            continue;
+        const similar = [];
+        for (let j = i + 1; j < entries.length; j++) {
+            const entryB = entries[j];
+            if (checked.has(entryB.note.id))
+                continue;
+            const embeddingB = embeddings.get(entryB.note.id);
+            if (!embeddingB)
+                continue;
+            const similarity = cosineSimilarity(embeddingA, embeddingB);
+            if (similarity >= threshold) {
+                similar.push({ entry: entryB, similarity });
+            }
+        }
+        if (similar.length > 0) {
+            suggestionCount++;
+            similar.sort((a, b) => b.similarity - a.similarity);
+            const sources = [entryA, ...similar.map((s) => s.entry)];
+            const effectiveMode = resolveEffectiveConsolidationMode(sources.map((source) => source.note), defaultConsolidationMode, explicitMode);
+            lines.push(`${suggestionCount}. MERGE ${sources.length} NOTES`);
+            lines.push(`   Into: "${entryA.note.title} (consolidated)"`);
+            lines.push("   Sources:");
+            for (const src of sources) {
+                const simStr = src.note.id === entryA.note.id ? "" : ` (${similar.find((s) => s.entry.note.id === src.note.id)?.similarity.toFixed(3)})`;
+                lines.push(`     - ${src.note.title} (${src.note.id})${simStr}`);
+            }
+            const modeDescription = (() => {
+                switch (effectiveMode) {
+                    case "supersedes":
+                        return "preserves history";
+                    case "delete":
+                        return "removes sources";
+                    default: {
+                        const _exhaustive = effectiveMode;
+                        throw new UnknownConsolidationModeError(_exhaustive);
+                    }
+                }
+            })();
+            const noteEvidence = sources.map((source) => buildConsolidateNoteEvidence(source.note, allNotes, entryA.note));
+            const mergeWarnings = buildGroupWarnings(sources.map((source) => source.note), entryA.note);
+            const mergeRisk = aggregateMergeRisk(noteEvidence.map((e) => e.mergeRisk));
+            lines.push(`   Mode: ${effectiveMode} (${modeDescription})`);
+            if (evidence) {
+                for (const note of noteEvidence) {
+                    lines.push(`   Evidence: ${note.title} | ${note.lifecycle}, ${note.role ?? "untyped"} | ${Math.round(note.ageDays)}d | rel:${note.relatedCount} | risk:${note.mergeRisk}`);
+                }
+                if (mergeWarnings.length > 0) {
+                    lines.push(`   Warnings: ${mergeWarnings.join("; ")}`);
+                }
+                lines.push(`   Merge risk: ${mergeRisk}`);
+            }
+            lines.push("   To execute:");
+            lines.push(`     consolidate({ strategy: "execute-merge", mergePlan: {`);
+            lines.push(`       sourceIds: [${sources.map((s) => `"${s.note.id}"`).join(", ")}],`);
+            lines.push(`       targetTitle: "${entryA.note.title} (consolidated)"`);
+            lines.push(`     }})`);
+            lines.push("");
+            suggestions.push({
+                targetTitle: `${entryA.note.title} (consolidated)`,
+                sourceIds: sources.map((s) => s.note.id),
+                similarities: similar.map((s) => ({ id: s.entry.note.id, similarity: s.similarity })),
+            });
+            if (evidence) {
+                mergeSuggestions.push({
+                    targetTitle: `${entryA.note.title} (consolidated)`,
+                    sourceIds: sources.map((source) => source.note.id),
+                    mode: effectiveMode,
+                    notes: noteEvidence,
+                    warnings: mergeWarnings.length > 0 ? mergeWarnings : undefined,
+                    mergeRisk,
+                });
+            }
+            checked.add(entryA.note.id);
+            for (const s of similar)
+                checked.add(s.entry.note.id);
+        }
+    }
+    if (suggestionCount === 0) {
+        lines.push("No merge suggestions found. Try lowering the threshold or manual review.");
+    }
+    else {
+        lines.push(`Generated ${suggestionCount} merge suggestion(s). Review carefully before executing.`);
+    }
+    const structuredContent = {
+        action: "consolidated",
+        strategy: "suggest-merges",
+        project: toProjectRef(project),
+        notesProcessed: entries.length,
+        notesModified: 0,
+        mergeSuggestions: evidence ? mergeSuggestions : undefined,
+    };
+    return { content: [{ type: "text", text: lines.join("\n") }], structuredContent };
+}
+async function loadEmbeddingsByNoteId(entries) {
+    const embeddings = new Map();
+    await Promise.all(entries.map(async (entry) => {
+        const record = await entry.vault.storage.readEmbedding(entry.note.id);
+        if (record) {
+            embeddings.set(entry.note.id, record.embedding);
+        }
+    }));
+    return embeddings;
+}
+export async function executeMerge(ctx, entries, mergePlan, defaultConsolidationMode, project, cwd, explicitMode, policy, allowProtectedBranch = false, evidence = true) {
+    const { vaultManager } = ctx;
+    const sourceIds = normalizeMergePlanSourceIds(mergePlan.sourceIds);
+    const targetTitle = mergePlan.targetTitle.trim();
+    const { content: customContent, description, summary, tags } = mergePlan;
+    if (sourceIds.length < 2) {
+        const structuredContent = {
+            action: "consolidated",
+            strategy: "execute-merge",
+            project: toProjectRef(project),
+            notesProcessed: entries.length,
+            notesModified: 0,
+            warnings: ["execute-merge requires at least two distinct sourceIds."],
+        };
+        return { content: [{ type: "text", text: "execute-merge requires at least two distinct sourceIds." }], structuredContent };
+    }
+    if (!targetTitle) {
+        const structuredContent = {
+            action: "consolidated",
+            strategy: "execute-merge",
+            project: toProjectRef(project),
+            notesProcessed: entries.length,
+            notesModified: 0,
+            warnings: ["execute-merge requires a non-empty targetTitle."],
+        };
+        return { content: [{ type: "text", text: "execute-merge requires a non-empty targetTitle." }], structuredContent };
+    }
+    // Find all source entries
+    const sourceEntries = [];
+    for (const id of sourceIds) {
+        const entry = entries.find((e) => e.note.id === id);
+        if (!entry) {
+            const structuredContent = {
+                action: "consolidated",
+                strategy: "execute-merge",
+                project: toProjectRef(project),
+                notesProcessed: entries.length,
+                notesModified: 0,
+                warnings: [`Source note '${id}' not found.`],
+            };
+            return { content: [{ type: "text", text: `Source note '${id}' not found.` }], structuredContent };
+        }
+        sourceEntries.push(entry);
+    }
+    const consolidationMode = resolveEffectiveConsolidationMode(sourceEntries.map((entry) => entry.note), defaultConsolidationMode, explicitMode);
+    const existingTargetEntry = findExistingExecuteMergeTarget(entries, sourceEntries, targetTitle);
+    const projectVault = cwd ? await vaultManager.getProjectVaultIfExists(cwd) : null;
+    const targetVault = existingTargetEntry?.vault ?? projectVault ?? vaultManager.main;
+    let touchesProjectVault = targetVault.isProject || sourceEntries.some((entry) => entry.vault.isProject);
+    if (!touchesProjectVault && consolidationMode === "delete") {
+        touchesProjectVault = await wouldRelationshipCleanupTouchProjectVault(ctx, sourceIds);
+    }
+    if (touchesProjectVault) {
+        const projectLabel = project
+            ? `${project.name} (${project.id})`
+            : "this context";
+        const protectedBranchCheck = await shouldBlockProtectedBranchCommit(ctx, {
+            cwd,
+            writeScope: "project",
+            automaticCommit: true,
+            projectLabel,
+            policy,
+            allowProtectedBranch,
+            toolName: "consolidate",
+        });
+        if (protectedBranchCheck.blocked) {
+            const message = protectedBranchCheck.message ?? "Protected branch policy blocked this commit.";
+            const structuredContent = {
+                action: "consolidated",
+                strategy: "execute-merge",
+                project: toProjectRef(project),
+                notesProcessed: entries.length,
+                notesModified: 0,
+                warnings: [message],
+            };
+            return { content: [{ type: "text", text: message }], structuredContent };
+        }
+    }
+    const now = isoDateString(new Date().toISOString());
+    // Build consolidated content
+    const sections = [];
+    if (customContent) {
+        if (description) {
+            sections.push(description);
+            sections.push("");
+        }
+        sections.push(customContent);
+    }
+    else {
+        if (description) {
+            sections.push(description);
+            sections.push("");
+        }
+        sections.push("## Consolidated from:");
+        for (const entry of sourceEntries) {
+            sections.push(`### ${entry.note.title}`);
+            sections.push(`*Source: \`${entry.note.id}\`*`);
+            sections.push("");
+            sections.push(entry.note.content);
+            sections.push("");
+        }
+    }
+    // Combine tags (deduplicated)
+    const combinedTags = tags ?? Array.from(new Set(sourceEntries.flatMap((e) => e.note.tags)));
+    // Collect all unique relationships from sources (excluding relationships among sources)
+    const sourceIdsSet = new Set(sourceIds);
+    const relationshipSources = existingTargetEntry
+        ? [...sourceEntries.map((entry) => entry.note), existingTargetEntry.note]
+        : sourceEntries.map((entry) => entry.note);
+    const allRelationships = mergeRelationshipsFromNotes(relationshipSources, sourceIdsSet);
+    // Create or update the consolidated note
+    const targetId = existingTargetEntry?.note.id ?? makeId(targetTitle);
+    const consolidatedNote = {
+        id: targetId,
+        title: targetTitle,
+        content: sections.join("\n").trim(),
+        tags: combinedTags,
+        lifecycle: "permanent",
+        project: project?.id,
+        projectName: project?.name,
+        relatedTo: allRelationships,
+        createdAt: existingTargetEntry?.note.createdAt ?? now,
+        updatedAt: now,
+        memoryVersion: 1,
+    };
+    // Write consolidated note
+    await targetVault.storage.writeNote(consolidatedNote);
+    let embeddingStatus = { status: "written" };
+    const embedResult = await attempt("consolidate:embed", async () => {
+        const text = await embedTextForNote(targetVault.storage, consolidatedNote);
+        const vector = await embed(text);
+        await targetVault.storage.writeEmbedding({
+            id: targetId,
+            model: embedModel,
+            embedding: vector,
+            updatedAt: now,
+        });
+    });
+    if (!embedResult.ok) {
+        embeddingStatus = { status: "skipped", reason: getErrorMessage(embedResult.error) };
+        console.error(`[embedding] Failed for consolidated note '${targetId}': ${embedResult.error}`);
+    }
+    const vaultChanges = new Map();
+    // Handle sources based on consolidation mode
+    switch (consolidationMode) {
+        case "delete": {
+            // Delete all sources
+            for (const entry of sourceEntries) {
+                await entry.vault.storage.deleteNote(entry.note.id);
+                addVaultChange(vaultChanges, entry.vault, vaultManager.noteRelPath(entry.vault, entry.note.id));
+            }
+            const cleanupChanges = await removeRelationshipsToNoteIds(ctx, sourceIds);
+            for (const [vault, files] of cleanupChanges) {
+                for (const file of files) {
+                    addVaultChange(vaultChanges, vault, file);
+                }
+            }
+            break;
+        }
+        case "supersedes": {
+            // Mark sources with supersedes relationship
+            for (const entry of sourceEntries) {
+                const updatedRels = [...(entry.note.relatedTo ?? [])];
+                if (!updatedRels.some((r) => r.id === targetId)) {
+                    updatedRels.push({ id: targetId, type: "supersedes" });
+                }
+                await entry.vault.storage.writeNote({
+                    ...entry.note,
+                    relatedTo: updatedRels,
+                    updatedAt: now,
+                });
+                addVaultChange(vaultChanges, entry.vault, vaultManager.noteRelPath(entry.vault, entry.note.id));
+            }
+            break;
+        }
+        default: {
+            const _exhaustive = consolidationMode;
+            throw new UnknownConsolidationModeError(_exhaustive);
+        }
+    }
+    // Add consolidated note to changes
+    addVaultChange(vaultChanges, targetVault, vaultManager.noteRelPath(targetVault, targetId));
+    // Commit changes per vault
+    let targetCommitStatus = { status: "skipped", reason: "no-changes" };
+    let targetPushStatus = { status: "skipped", reason: "no-remote" };
+    let targetCommitBody;
+    let targetCommitMessage;
+    let targetCommitFiles;
+    for (const [vault, files] of vaultChanges) {
+        const isTargetVault = vault === targetVault;
+        // Determine action and summary based on mode
+        let action;
+        let sourceSummary;
+        switch (consolidationMode) {
+            case "delete":
+                action = "consolidate(delete)";
+                sourceSummary = "Deleted as part of consolidation";
+                break;
+            case "supersedes":
+                action = "consolidate(supersedes)";
+                sourceSummary = "Marked as superseded by consolidation";
+                break;
+            default: {
+                const _exhaustive = consolidationMode;
+                throw new UnknownConsolidationModeError(_exhaustive);
+            }
+        }
+        const defaultSummary = `Consolidated ${sourceIds.length} notes into new note`;
+        const commitSummary = isTargetVault ? (summary ?? defaultSummary) : sourceSummary;
+        const commitBody = isTargetVault
+            ? formatCommitBody({
+                summary: commitSummary,
+                noteId: targetId,
+                noteTitle: targetTitle,
+                projectName: project?.name,
+                mode: consolidationMode,
+                noteIds: sourceIds,
+                description: `Sources: ${sourceIds.join(", ")}`,
+            })
+            : formatCommitBody({
+                summary: commitSummary,
+                noteIds: files.map((f) => f.replace(/\.mnemonic\/notes\/(.+)\.md$/, "$1").replace(/notes\/(.+)\.md$/, "$1")),
+            });
+        const commitMessage = `${action}: ${targetTitle}`;
+        const commitStatus = await vault.git.commitWithStatus(commitMessage, files, commitBody);
+        const pushStatus = commitStatus.status === "committed"
+            ? await pushAfterMutation(ctx, vault)
+            : { status: "skipped", reason: "commit-failed" };
+        if (isTargetVault) {
+            targetCommitStatus = commitStatus;
+            targetPushStatus = pushStatus;
+            targetCommitBody = commitBody;
+            targetCommitMessage = commitMessage;
+            targetCommitFiles = [...files];
+        }
+    }
+    const retry = targetCommitMessage && targetCommitFiles
+        ? buildMutationRetryContract({
+            commit: targetCommitStatus,
+            commitMessage: targetCommitMessage,
+            commitBody: targetCommitBody,
+            files: targetCommitFiles,
+            cwd,
+            vault: targetVault,
+            mutationApplied: true,
+        })
+        : undefined;
+    const persistence = buildPersistenceStatus({
+        storage: targetVault.storage,
+        id: targetId,
+        embedding: embeddingStatus,
+        commit: targetCommitStatus,
+        push: targetPushStatus,
+        commitMessage: targetCommitMessage,
+        commitBody: targetCommitBody,
+        retry,
+    });
+    const lines = [];
+    lines.push(`Consolidated ${sourceIds.length} notes into '${targetId}'`);
+    lines.push(`Mode: ${consolidationMode}`);
+    lines.push(`Stored in: ${storageLabel(targetVault)}`);
+    if (existingTargetEntry) {
+        lines.push("Idempotency: reused existing target note.");
+    }
+    lines.push(formatPersistenceSummary(persistence));
+    switch (consolidationMode) {
+        case "supersedes":
+            lines.push("Sources preserved with 'supersedes' relationship.");
+            lines.push("Use 'prune-superseded' later to clean up if desired.");
+            break;
+        case "delete":
+            lines.push("Source notes deleted.");
+            break;
+        default: {
+            const _exhaustive = consolidationMode;
+            throw new UnknownConsolidationModeError(_exhaustive);
+        }
+    }
+    let executeMergeEvidence;
+    if (evidence) {
+        const allNotes = entries.map((entry) => entry.note);
+        const noteEvidence = sourceEntries.map((entry) => buildConsolidateNoteEvidence(entry.note, allNotes, sourceEntries[0]?.note));
+        const mergeWarnings = buildGroupWarnings(sourceEntries.map((entry) => entry.note), sourceEntries[0]?.note);
+        const mergeRisk = aggregateMergeRisk(noteEvidence.map((e) => e.mergeRisk));
+        lines.push("  Evidence:");
+        for (const note of noteEvidence) {
+            lines.push(`    ${note.title} | ${note.lifecycle}, ${note.role ?? "untyped"} | ${Math.round(note.ageDays)}d | rel:${note.relatedCount} | risk:${note.mergeRisk}`);
+        }
+        if (mergeWarnings.length > 0) {
+            lines.push(`  Warnings: ${mergeWarnings.join("; ")}`);
+        }
+        lines.push(`  Merge risk: ${mergeRisk}`);
+        executeMergeEvidence = {
+            notes: noteEvidence,
+            warnings: mergeWarnings.length > 0 ? mergeWarnings : undefined,
+            mergeRisk,
+        };
+    }
+    const structuredContent = {
+        action: "consolidated",
+        strategy: "execute-merge",
+        project: toProjectRef(project),
+        notesProcessed: entries.length,
+        notesModified: vaultChanges.size,
+        executeMergeEvidence,
+        persistence,
+        retry,
+    };
+    return { content: [{ type: "text", text: lines.join("\n") }], structuredContent };
+}
+function findExistingExecuteMergeTarget(entries, sourceEntries, targetTitle) {
+    const normalizedTitle = targetTitle.trim();
+    const targetSlug = slugify(normalizedTitle);
+    const sourceIds = new Set(sourceEntries.map((entry) => entry.note.id));
+    let sharedTargetIds;
+    for (const entry of sourceEntries) {
+        const supersededTargetIds = new Set((entry.note.relatedTo ?? [])
+            .filter((rel) => rel.type === "supersedes")
+            .map((rel) => rel.id)
+            .filter((id) => !sourceIds.has(id)));
+        if (supersededTargetIds.size === 0) {
+            return undefined;
+        }
+        sharedTargetIds = sharedTargetIds
+            ? new Set([...sharedTargetIds].filter((id) => supersededTargetIds.has(id)))
+            : supersededTargetIds;
+        if (sharedTargetIds.size === 0) {
+            return undefined;
+        }
+    }
+    const candidates = entries
+        .filter((entry) => sharedTargetIds?.has(entry.note.id))
+        .filter((entry) => entry.note.title.trim() === normalizedTitle)
+        .filter((entry) => !targetSlug || entry.note.id === targetSlug || entry.note.id.startsWith(`${targetSlug}-`))
+        .sort((left, right) => right.note.updatedAt.localeCompare(left.note.updatedAt));
+    return candidates[0];
+}
+export async function pruneSuperseded(ctx, entries, consolidationMode, project, cwd, policy, allowProtectedBranch = false) {
+    const { vaultManager } = ctx;
+    if (consolidationMode !== "delete") {
+        const structuredContent = {
+            action: "consolidated",
+            strategy: "prune-superseded",
+            project: toProjectRef(project),
+            notesProcessed: entries.length,
+            notesModified: 0,
+            warnings: [`prune-superseded requires consolidationMode="delete". Current mode: ${consolidationMode}.`],
+        };
+        return {
+            content: [{
+                    type: "text",
+                    text: `prune-superseded requires consolidationMode="delete". Current mode: ${consolidationMode}.\nSet mode explicitly or update project policy.`,
+                }],
+            structuredContent,
+        };
+    }
+    const lines = [];
+    lines.push(`Pruning superseded notes for ${project?.name ?? "global"}:`);
+    lines.push("");
+    // Find all notes that have a supersedes relationship pointing to them
+    const supersededIds = new Set();
+    const supersededBy = new Map();
+    for (const entry of entries) {
+        for (const rel of entry.note.relatedTo ?? []) {
+            if (rel.type === "supersedes") {
+                supersededIds.add(entry.note.id);
+                supersededBy.set(entry.note.id, rel.id);
+            }
+        }
+    }
+    if (supersededIds.size === 0) {
+        lines.push("No superseded notes found.");
+        const structuredContent = {
+            action: "consolidated",
+            strategy: "prune-superseded",
+            project: toProjectRef(project),
+            notesProcessed: entries.length,
+            notesModified: 0,
+        };
+        return { content: [{ type: "text", text: lines.join("\n") }], structuredContent };
+    }
+    const supersededList = Array.from(supersededIds);
+    let touchesProjectVault = supersededList.some((id) => entries.find((e) => e.note.id === id)?.vault.isProject);
+    if (!touchesProjectVault) {
+        touchesProjectVault = await wouldRelationshipCleanupTouchProjectVault(ctx, supersededList);
+    }
+    if (touchesProjectVault) {
+        const projectLabel = project
+            ? `${project.name} (${project.id})`
+            : "this context";
+        const protectedBranchCheck = await shouldBlockProtectedBranchCommit(ctx, {
+            cwd,
+            writeScope: "project",
+            automaticCommit: true,
+            projectLabel,
+            policy,
+            allowProtectedBranch,
+            toolName: "consolidate",
+        });
+        if (protectedBranchCheck.blocked) {
+            const message = protectedBranchCheck.message ?? "Protected branch policy blocked this commit.";
+            const structuredContent = {
+                action: "consolidated",
+                strategy: "prune-superseded",
+                project: toProjectRef(project),
+                notesProcessed: entries.length,
+                notesModified: 0,
+                warnings: [message],
+            };
+            return { content: [{ type: "text", text: message }], structuredContent };
+        }
+    }
+    lines.push(`Found ${supersededIds.size} superseded note(s) to prune:`);
+    const vaultChanges = new Map();
+    for (const id of supersededIds) {
+        const entry = entries.find((e) => e.note.id === id);
+        if (!entry)
+            continue;
+        const targetId = supersededBy.get(id);
+        lines.push(`  - ${entry.note.title} (${id}) -> superseded by ${targetId}`);
+        await entry.vault.storage.deleteNote(memoryId(id));
+        addVaultChange(vaultChanges, entry.vault, vaultManager.noteRelPath(entry.vault, id));
+    }
+    const cleanupChanges = await removeRelationshipsToNoteIds(ctx, Array.from(supersededIds));
+    for (const [vault, files] of cleanupChanges) {
+        for (const file of files) {
+            addVaultChange(vaultChanges, vault, file);
+        }
+    }
+    // Commit changes per vault
+    let retry;
+    for (const [vault, files] of vaultChanges) {
+        const prunedIds = files.map((f) => f.replace(/\.mnemonic\/notes\/(.+)\.md$/, "$1").replace(/notes\/(.+)\.md$/, "$1"));
+        const commitBody = formatCommitBody({
+            noteIds: prunedIds,
+            description: `Pruned ${prunedIds.length} superseded note(s)\nNotes: ${prunedIds.join(", ")}`,
+        });
+        const commitMessage = `prune: removed ${files.length} superseded note(s)`;
+        const commitStatus = await vault.git.commitWithStatus(commitMessage, files, commitBody);
+        if (!retry) {
+            retry = buildMutationRetryContract({
+                commit: commitStatus,
+                commitMessage,
+                commitBody,
+                files,
+                cwd,
+                vault,
+                mutationApplied: true,
+            });
+        }
+        if (commitStatus.status === "committed") {
+            await pushAfterMutation(ctx, vault);
+        }
+    }
+    lines.push("");
+    lines.push(`Pruned ${supersededIds.size} note(s).`);
+    const structuredContent = {
+        action: "consolidated",
+        strategy: "prune-superseded",
+        project: toProjectRef(project),
+        notesProcessed: entries.length,
+        notesModified: vaultChanges.size,
+        retry,
+    };
+    return { content: [{ type: "text", text: lines.join("\n") }], structuredContent };
+}
+export async function dryRunAll(entries, threshold, defaultConsolidationMode, project, explicitMode, evidence = false) {
+    const lines = [];
+    lines.push(`Consolidation analysis for ${project?.name ?? "global"}:`);
+    const modeLabel = explicitMode ?? `${defaultConsolidationMode} (project/default; all-temporary merges auto-delete)`;
+    lines.push(`Mode: ${modeLabel} | Threshold: ${threshold}`);
+    lines.push("");
+    // Run all analysis strategies
+    const dupes = await detectDuplicates(entries, threshold, project, evidence);
+    lines.push("=== DUPLICATE DETECTION ===");
+    lines.push(dupes.content[0]?.text ?? "No output");
+    lines.push("");
+    const clusters = findClusters(entries, project);
+    lines.push("=== CLUSTER ANALYSIS ===");
+    lines.push(clusters.content[0]?.text ?? "No output");
+    lines.push("");
+    const merges = await suggestMerges(entries, threshold, defaultConsolidationMode, project, explicitMode, evidence);
+    lines.push("=== MERGE SUGGESTIONS ===");
+    lines.push(merges.content[0]?.text ?? "No output");
+    const structuredContent = {
+        action: "consolidated",
+        strategy: "dry-run",
+        project: toProjectRef(project),
+        notesProcessed: entries.length,
+        notesModified: 0,
+        duplicatePairs: dupes.structuredContent.duplicatePairs,
+        mergeSuggestions: merges.structuredContent.mergeSuggestions,
+        themeGroups: clusters.structuredContent.themeGroups,
+        relationshipClusters: clusters.structuredContent.relationshipClusters,
+    };
+    return { content: [{ type: "text", text: lines.join("\n") }], structuredContent };
+}
+//# sourceMappingURL=consolidate-helpers.js.map