@danielblomma/cortex-mcp 2.4.0 → 2.4.2

package/scaffold/scripts/ingest.mjs

@@ -1,3886 +1,11 @@
 #!/usr/bin/env node
-import crypto from "node:crypto";
-import fs from "node:fs";
-import os from "node:os";
 import path from "node:path";
 import { fileURLToPath } from "node:url";
-import { execSync } from "node:child_process";
-import { Worker } from "node:worker_threads";
-import {
-  loadParsers,
-  getChunkParserForExtension,
-  parseCSharpProject,
-  hasCSharpProjectParser,
-  isCSharpParserAvailable,
-  getCSharpParserRuntime,
-  PARALLEL_SAFE_LANGUAGES
-} from "./ingest-parsers.mjs";
+import { main } from "./lib/ingest/main.mjs";
 
-const __filename = fileURLToPath(import.meta.url);
-const __dirname = path.dirname(__filename);
-const REPO_ROOT = process.env.CORTEX_PROJECT_ROOT
-  ? path.resolve(process.env.CORTEX_PROJECT_ROOT)
-  : path.resolve(__dirname, "..", "..");
-const CONTEXT_DIR = path.join(REPO_ROOT, ".context");
-const CACHE_DIR = path.join(CONTEXT_DIR, "cache");
-const DB_IMPORT_DIR = path.join(CONTEXT_DIR, "db", "import");
-
-const SUPPORTED_TEXT_EXTENSIONS = new Set([
-  ".md",
-  ".mdx",
-  ".txt",
-  ".adoc",
-  ".rst",
-  ".yaml",
-  ".yml",
-  ".json",
-  ".toml",
-  ".csv",
-  ".ts",
-  ".tsx",
-  ".mts",
-  ".cts",
-  ".js",
-  ".jsx",
-  ".mjs",
-  ".cjs",
-  ".py",
-  ".go",
-  ".java",
-  ".cs",
-  ".vb",
-  ".sln",
-  ".vbproj",
-  ".csproj",
-  ".fsproj",
-  ".props",
-  ".targets",
-  ".config",
-  ".resx",
-  ".settings",
-  ".rb",
-  ".rs",
-  ".php",
-  ".swift",
-  ".kt",
-  ".sql",
-  ".sh",
-  ".bash",
-  ".zsh",
-  ".ps1",
-  ".c",
-  ".h",
-  ".cpp",
-  ".hpp",
-  ".cc",
-  ".hh",
-  ".bas",
-  ".cls",
-  ".frm",
-  ".ctl"
-]);
-
-const LEGACY_DOTNET_METADATA_EXTENSIONS = new Set([
-  ".sln",
-  ".vbproj",
-  ".csproj",
-  ".fsproj",
-  ".props",
-  ".targets",
-  ".config",
-  ".resx",
-  ".settings"
-]);
-
-const PROJECT_DEFINITION_EXTENSIONS = new Set([".sln", ".vbproj", ".csproj", ".fsproj", ".vcxproj"]);
-const STRUCTURED_NON_CODE_CHUNK_EXTENSIONS = new Set([".config", ".resx", ".settings", ".md", ".mdx"]);
-
-const CODE_FILE_EXTENSIONS = new Set([
-  ".ts",
-  ".tsx",
-  ".mts",
-  ".cts",
-  ".js",
-  ".jsx",
-  ".mjs",
-  ".cjs",
-  ".py",
-  ".go",
-  ".java",
-  ".cs",
-  ".vb",
-  ".rb",
-  ".rs",
-  ".php",
-  ".swift",
-  ".kt",
-  ".sql",
-  ".sh",
-  ".bash",
-  ".zsh",
-  ".ps1",
-  ".c",
-  ".h",
-  ".cpp",
-  ".hpp",
-  ".cc",
-  ".hh",
-  ".bas",
-  ".cls",
-  ".frm",
-  ".ctl"
-]);
-
-const SQL_REFERENCE_SOURCE_EXTENSIONS = new Set([
-  ".vb",
-  ".cs",
-  ".config",
-  ".resx",
-  ".settings"
-]);
-const NAMED_RESOURCE_REFERENCE_SOURCE_EXTENSIONS = new Set([".vb", ".cs"]);
-
-const SQL_OBJECT_REFERENCE_PATTERNS = [
-  /\b(?:SqlCommand|OleDbCommand|OdbcCommand)\s*\(\s*"([^"\r\n]{2,200})"/gi,
-  /\bCommandText\s*=\s*"([^"\r\n]{2,500})"/gi,
-  /\bCommandType\s*=\s*(?:CommandType\.)?StoredProcedure[\s\S]{0,240}?"([^"\r\n]{2,200})"/gi,
-  /"([^"\r\n]{2,200})"[\s\S]{0,240}?\bCommandType\s*=\s*(?:CommandType\.)?StoredProcedure/gi
-];
-
-const SQL_STRING_REFERENCE_PATTERNS = [
-  /\bexec(?:ute)?\s+([#@]?[A-Za-z0-9_[\].]+)/gi,
-  /\bfrom\s+([#@]?[A-Za-z0-9_[\].]+)/gi,
-  /\bjoin\s+([#@]?[A-Za-z0-9_[\].]+)/gi,
-  /\bupdate\s+([#@]?[A-Za-z0-9_[\].]+)/gi,
-  /\binsert\s+into\s+([#@]?[A-Za-z0-9_[\].]+)/gi,
-  /\bdelete\s+from\s+([#@]?[A-Za-z0-9_[\].]+)/gi,
-  /\bmerge\s+into\s+([#@]?[A-Za-z0-9_[\].]+)/gi
-];
-
-const SQL_RESOURCE_KEY_PATTERNS = [
-  /\bMy\.Resources\.([A-Za-z_][A-Za-z0-9_]*)/g,
-  /\bResources\.([A-Za-z_][A-Za-z0-9_]*)/g,
-  /\bMy\.Settings\.([A-Za-z_][A-Za-z0-9_]*)/g,
-  /\b(?:[A-Za-z_][A-Za-z0-9_]*\.)?Settings\.Default\.([A-Za-z_][A-Za-z0-9_]*)/g,
-  /\bGetString\(\s*"([^"\r\n]+)"/g,
-  /\bGetObject\(\s*"([^"\r\n]+)"/g
-];
-const CONFIG_KEY_REFERENCE_PATTERNS = [
-  /\bConfigurationManager\.ConnectionStrings\s*\[\s*"([^"\r\n]+)"\s*\]/g,
-  /\bConfigurationManager\.ConnectionStrings\s*\(\s*"([^"\r\n]+)"\s*\)/g,
-  /\bConfigurationManager\.AppSettings\s*\[\s*"([^"\r\n]+)"\s*\]/g,
-  /\bConfigurationManager\.AppSettings\s*\(\s*"([^"\r\n]+)"\s*\)/g,
-  /\bGetConnectionString\(\s*"([^"\r\n]+)"\s*\)/g,
-  /\bGetAppSetting\(\s*"([^"\r\n]+)"\s*\)/g
-];
-
-const SKIP_DIRECTORIES = new Set([
-  ".git",
-  ".idea",
-  ".vscode",
-  "node_modules",
-  "bin",
-  "obj",
-  "dist",
-  "build",
-  "coverage",
-  ".next",
-  ".cache",
-  ".context"
-]);
-
-const MAX_FILE_BYTES = 1024 * 1024;
-const MAX_CONTENT_CHARS = 60000;
-const MAX_BODY_CHARS = 12000;
-const RULE_KEYWORD_LIMIT = 20;
-const DEFAULT_CHUNK_WINDOW_LINES = 80;
-const DEFAULT_CHUNK_OVERLAP_LINES = 16;
-const DEFAULT_CHUNK_SPLIT_MIN_LINES = 120;
-const DEFAULT_CHUNK_MAX_WINDOWS = 8;
-const IMPORT_RESOLUTION_EXTENSIONS = [".ts", ".tsx", ".mts", ".cts", ".js", ".jsx", ".mjs", ".cjs", ".json"];
-const IMPORT_RUNTIME_JS_EXTENSIONS = new Set([".js", ".jsx", ".mjs", ".cjs"]);
-const IMPORT_RUNTIME_JS_RESOLUTION_EXTENSIONS = [".ts", ".tsx", ".mts", ".cts", ".js", ".jsx", ".mjs", ".cjs"];
-const CPP_IMPORT_RESOLUTION_EXTENSIONS = [".h", ".hh", ".hpp", ".c", ".cc", ".cpp"];
-
-const STOP_WORDS = new Set([
-  "the",
-  "and",
-  "for",
-  "with",
-  "from",
-  "that",
-  "this",
-  "must",
-  "when",
-  "where",
-  "into",
-  "used",
-  "using",
-  "only",
-  "true",
-  "false",
-  "unless",
-  "should",
-  "global",
-  "active",
-  "rule",
-  "rules",
-  "data",
-  "file",
-  "files",
-  "code",
-  "docs",
-  "context",
-  "och",
-  "det",
-  "att",
-  "som",
-  "med",
-  "för",
-  "utan",
-  "eller",
-  "inte",
-  "ska",
-  "skall",
-  "måste",
-  "kan",
-  "vid",
-  "alla"
-]);
-
-function parseArgs(argv) {
-  const args = new Set(argv.slice(2));
-  if (args.has("--help") || args.has("-h")) {
-    printHelp();
-    process.exit(0);
-  }
-
-  return {
-    mode: args.has("--changed") ? "changed" : "full",
-    verbose: args.has("--verbose")
-  };
-}
-
-function printHelp() {
-  console.log("Usage: ./scripts/ingest.sh [--changed] [--verbose]");
-  console.log("");
-  console.log("Options:");
-  console.log("  --changed   Ingest only changed/untracked files when git is available.");
-  console.log("  --verbose   Print skipped files and additional diagnostics.");
-  console.log("  -h, --help  Show this help message.");
-}
-
-function ensureDirectory(directoryPath) {
-  fs.mkdirSync(directoryPath, { recursive: true });
-}
-
-function isTextFile(relPath) {
-  const ext = path.extname(relPath).toLowerCase();
-  const base = path.basename(relPath).toLowerCase();
-  if (SUPPORTED_TEXT_EXTENSIONS.has(ext)) {
-    return true;
-  }
-
-  return base === "readme" || base.startsWith("readme.");
-}
-
-function isBinaryBuffer(buffer) {
-  const scanLength = Math.min(buffer.length, 4000);
-  for (let index = 0; index < scanLength; index += 1) {
-    if (buffer[index] === 0) {
-      return true;
-    }
-  }
-
-  return false;
-}
-
-function toPosixPath(value) {
-  return value.split(path.sep).join("/");
-}
-
-function normalizeToken(value) {
-  return value.toLowerCase().replace(/[^a-z0-9]/g, "");
-}
-
-function tokenizeKeywords(value) {
-  return value
-    .toLowerCase()
-    .split(/[^a-z0-9]+/g)
-    .map((token) => token.trim())
-    .filter((token) => token.length >= 3 && !STOP_WORDS.has(token));
-}
-
-function uniqueSorted(values) {
-  return [...new Set(values)].sort();
-}
-
-function parsePositiveIntegerEnv(name, fallback) {
-  const rawValue = process.env[name];
-  if (!rawValue) {
-    return fallback;
-  }
-  const parsed = Number(rawValue);
-  if (!Number.isFinite(parsed) || parsed < 1) {
-    return fallback;
-  }
-  return Math.floor(parsed);
-}
-
-function parseNonNegativeIntegerEnv(name, fallback) {
-  const rawValue = process.env[name];
-  if (!rawValue) {
-    return fallback;
-  }
-  const parsed = Number(rawValue);
-  if (!Number.isFinite(parsed) || parsed < 0) {
-    return fallback;
-  }
-  return Math.floor(parsed);
-}
-
-function isTruthyEnv(value) {
-  if (typeof value !== "string") {
-    return false;
-  }
-  const normalized = value.trim().toLowerCase();
-  return normalized !== "" && normalized !== "0" && normalized !== "false" && normalized !== "no" && normalized !== "off";
-}
-
-function createIngestMemoryTrace() {
-  const enabled = isTruthyEnv(process.env.CORTEX_INGEST_TRACE_MEMORY);
-
-  return {
-    enabled,
-    checkpoint(label, counts = {}) {
-      if (!enabled) {
-        return;
-      }
-
-      const memory = process.memoryUsage();
-      process.stderr.write(
-        `${JSON.stringify({
-          type: "cortex.ingest.memory",
-          label,
-          rss_bytes: memory.rss,
-          rss_mb: Number((memory.rss / 1024 / 1024).toFixed(2)),
-          heap_used_bytes: memory.heapUsed,
-          external_bytes: memory.external,
-          counts
-        })}\n`
-      );
-    }
-  };
-}
-
-function parseSourcePaths(configText) {
-  const sourcePaths = [];
-  const lines = configText.split(/\r?\n/);
-  let inSourcePaths = false;
-
-  for (const line of lines) {
-    if (!inSourcePaths && /^source_paths:\s*$/.test(line.trim())) {
-      inSourcePaths = true;
-      continue;
-    }
-
-    if (!inSourcePaths) {
-      continue;
-    }
-
-    const entryMatch = line.match(/^\s*-\s*(.+?)\s*$/);
-    if (entryMatch) {
-      const unquoted = entryMatch[1].replace(/^['"]|['"]$/g, "");
-      sourcePaths.push(unquoted);
-      continue;
-    }
-
-    if (line.trim() !== "" && !/^\s/.test(line)) {
-      break;
-    }
-  }
-
-  return sourcePaths;
-}
-
-function parseRules(rulesText) {
-  const lines = rulesText.split(/\r?\n/);
-  const rules = [];
-  let current = null;
-
-  const pushCurrent = () => {
-    if (!current || !current.id) {
-      return;
-    }
-    rules.push({
-      id: current.id,
-      description: current.description ?? "",
-      priority: Number.isFinite(current.priority) ? current.priority : 0,
-      enforce: current.enforce === true
-    });
-  };
-
-  for (const line of lines) {
-    const idMatch = line.match(/^\s*-\s*id:\s*(.+?)\s*$/);
-    if (idMatch) {
-      pushCurrent();
-      current = { id: idMatch[1].replace(/^['"]|['"]$/g, "") };
-      continue;
-    }
-
-    if (!current) {
-      continue;
-    }
-
-    const descriptionMatch = line.match(/^\s*description:\s*(.+?)\s*$/);
-    if (descriptionMatch) {
-      current.description = descriptionMatch[1].replace(/^['"]|['"]$/g, "");
-      continue;
-    }
-
-    const priorityMatch = line.match(/^\s*priority:\s*(\d+)\s*$/);
-    if (priorityMatch) {
-      current.priority = Number(priorityMatch[1]);
-      continue;
-    }
-
-    const enforceMatch = line.match(/^\s*enforce:\s*(true|false)\s*$/i);
-    if (enforceMatch) {
-      current.enforce = enforceMatch[1].toLowerCase() === "true";
-    }
-  }
-
-  pushCurrent();
-  return rules;
-}
-
-function walkDirectory(directoryPath, files) {
-  const entries = fs.readdirSync(directoryPath, { withFileTypes: true });
-  for (const entry of entries) {
-    const absolutePath = path.join(directoryPath, entry.name);
-    if (entry.isDirectory() && shouldSkipDirectory(absolutePath, entry.name)) {
-      continue;
-    }
-
-    if (entry.isDirectory()) {
-      walkDirectory(absolutePath, files);
-      continue;
-    }
-
-    if (entry.isFile()) {
-      files.add(absolutePath);
-    }
-  }
-}
-
-function shouldSkipDirectory(absolutePath, entryName) {
-  if (entryName === "bin" && path.resolve(path.dirname(absolutePath)) === REPO_ROOT) {
-    return false;
-  }
-  return SKIP_DIRECTORIES.has(entryName);
-}
-
-function normalizeSourcePrefix(sourcePath) {
-  const source = toPosixPath(sourcePath).replace(/^\.\/+/, "").replace(/\/+$/, "");
-  return source === "." ? "" : source;
-}
-
-function normalizeRelativePath(relPath) {
-  return toPosixPath(relPath).replace(/^\.\/+/, "").replace(/\/+$/, "");
-}
-
-function hasSkippedDirectorySegment(relPath) {
-  const parts = normalizeRelativePath(relPath).split("/").filter(Boolean);
-  return parts.some((part, index) => {
-    if (part === "bin" && index === 0) {
-      return false;
-    }
-    return SKIP_DIRECTORIES.has(part);
-  });
-}
-
-function hasSourcePrefix(relPath, sourcePaths) {
-  const normalizedRelPath = normalizeRelativePath(relPath);
-  if (!normalizedRelPath || hasSkippedDirectorySegment(normalizedRelPath)) {
-    return false;
-  }
-  return sourcePaths.some((sourcePath) => {
-    const source = normalizeSourcePrefix(sourcePath);
-    return source === "" || normalizedRelPath === source || normalizedRelPath.startsWith(`${source}/`);
-  });
-}
-
-function pushImportResolutionCandidate(candidates, seenCandidates, candidatePath) {
-  if (!seenCandidates.has(candidatePath)) {
-    seenCandidates.add(candidatePath);
-    candidates.push(candidatePath);
-  }
-}
-
-function isCppLikeFilePath(filePath) {
-  return [".c", ".h", ".cc", ".cpp", ".hh", ".hpp"].includes(path.posix.extname(filePath).toLowerCase());
-}
-
-function resolveRelativeImportTargetId(filePath, importPath, indexedFileIds) {
-  const isCppLike = isCppLikeFilePath(filePath);
-  const isRelativeImport = importPath.startsWith(".");
-  const isLocalCppInclude =
-    isCppLike && !path.posix.isAbsolute(importPath) && !/^[A-Za-z]:[\\/]/.test(importPath);
-
-  if (!isRelativeImport && !isLocalCppInclude) {
-    return null;
-  }
-
-  const basePath = path.posix.normalize(path.posix.join(path.posix.dirname(filePath), importPath));
-  const candidates = [];
-  const seenCandidates = new Set();
-  pushImportResolutionCandidate(candidates, seenCandidates, basePath);
-
-  if (path.posix.extname(basePath) === "") {
-    const extensions = isCppLike ? CPP_IMPORT_RESOLUTION_EXTENSIONS : IMPORT_RESOLUTION_EXTENSIONS;
-    for (const extension of extensions) {
-      pushImportResolutionCandidate(candidates, seenCandidates, `${basePath}${extension}`);
-    }
-    if (!isCppLike) {
-      for (const extension of IMPORT_RESOLUTION_EXTENSIONS) {
-        pushImportResolutionCandidate(candidates, seenCandidates, path.posix.join(basePath, `index${extension}`));
-      }
-    }
-  } else if (IMPORT_RUNTIME_JS_EXTENSIONS.has(path.posix.extname(basePath))) {
-    const extension = path.posix.extname(basePath);
-    const stemPath = basePath.slice(0, -extension.length);
-    for (const candidateExtension of IMPORT_RUNTIME_JS_RESOLUTION_EXTENSIONS) {
-      pushImportResolutionCandidate(candidates, seenCandidates, `${stemPath}${candidateExtension}`);
-    }
-  }
-
-  for (const candidate of candidates) {
-    const targetFileId = `file:${candidate}`;
-    if (indexedFileIds.has(targetFileId)) {
-      return targetFileId;
-    }
-  }
-
-  return null;
-}
-
-function getGitChanges() {
-  try {
-    const output = execSync("git status --porcelain", {
-      cwd: REPO_ROOT,
-      stdio: ["ignore", "pipe", "ignore"],
-      encoding: "utf8"
-    });
-
-    const changed = new Set();
-    const deleted = new Set();
-
-    for (const line of output.split(/\r?\n/)) {
-      if (!line) continue;
-      const status = line.slice(0, 2);
-      const payload = line.slice(3).trim();
-      if (!payload) continue;
-
-      if (payload.includes(" -> ")) {
-        const [fromPath, toPath] = payload.split(" -> ");
-        deleted.add(path.resolve(REPO_ROOT, fromPath));
-        changed.add(path.resolve(REPO_ROOT, toPath));
-        continue;
-      }
-
-      const absolutePath = path.resolve(REPO_ROOT, payload);
-      if (status.includes("D")) {
-        deleted.add(absolutePath);
-      } else {
-        changed.add(absolutePath);
-      }
-    }
-
-    return {
-      changed: [...changed],
-      deleted: [...deleted]
-    };
-  } catch {
-    return {
-      changed: [],
-      deleted: []
-    };
-  }
-}
-
-function collectCandidateFiles(sourcePaths, mode) {
-  const candidates = new Set();
-  const deletedRelPaths = new Set();
-
-  if (mode === "changed") {
-    const gitChanges = getGitChanges();
-    if (gitChanges.changed.length > 0 || gitChanges.deleted.length > 0) {
-      for (const absolutePath of gitChanges.changed) {
-        if (!fs.existsSync(absolutePath)) {
-          continue;
-        }
-
-        const stats = fs.statSync(absolutePath);
-        if (stats.isFile()) {
-          const relPath = toPosixPath(path.relative(REPO_ROOT, absolutePath));
-          if (hasSourcePrefix(relPath, sourcePaths)) {
-            candidates.add(absolutePath);
-          }
-          continue;
-        }
-
-        if (stats.isDirectory()) {
-          const nestedFiles = new Set();
-          walkDirectory(absolutePath, nestedFiles);
-          for (const nestedPath of nestedFiles) {
-            const nestedRelPath = toPosixPath(path.relative(REPO_ROOT, nestedPath));
-            if (hasSourcePrefix(nestedRelPath, sourcePaths)) {
-              candidates.add(nestedPath);
-            }
-          }
-        }
-      }
-
-      for (const deletedPath of gitChanges.deleted) {
-        const relPath = toPosixPath(path.relative(REPO_ROOT, deletedPath));
-        if (hasSourcePrefix(relPath, sourcePaths)) {
-          deletedRelPaths.add(relPath);
-        }
-      }
-
-      return {
-        candidates,
-        incrementalMode: true,
-        deletedRelPaths: [...deletedRelPaths]
-      };
-    }
-  }
-
-  for (const sourcePath of sourcePaths) {
-    if (hasSkippedDirectorySegment(sourcePath)) {
-      continue;
-    }
-    const absoluteSourcePath = path.resolve(REPO_ROOT, sourcePath);
-    if (!fs.existsSync(absoluteSourcePath)) {
-      continue;
-    }
-
-    const stats = fs.statSync(absoluteSourcePath);
-    if (stats.isFile()) {
-      candidates.add(absoluteSourcePath);
-      continue;
-    }
-
-    if (stats.isDirectory()) {
-      walkDirectory(absoluteSourcePath, candidates);
-    }
-  }
-
-  return {
-    candidates,
-    incrementalMode: false,
-    deletedRelPaths: []
-  };
-}
-
-function detectKind(relPath) {
-  const lower = relPath.toLowerCase();
-  const ext = path.extname(lower);
-  const isAdrPath =
-    /(^|\/)(adr|adrs|decisions)(\/|$)/.test(lower) ||
-    /(^|\/)adr[-_ ]?\d+/.test(path.basename(lower));
-
-  if (isAdrPath) {
-    return "ADR";
-  }
-
-  if (
-    lower.startsWith("docs/") ||
-    ext === ".md" ||
-    ext === ".mdx" ||
-    ext === ".txt" ||
-    ext === ".adoc" ||
-    ext === ".rst"
-  ) {
-    return "DOC";
-  }
-
-  if (LEGACY_DOTNET_METADATA_EXTENSIONS.has(ext) || !CODE_FILE_EXTENSIONS.has(ext)) {
-    return "DOC";
-  }
-
-  return "CODE";
-}
-
-function trustLevelForKind(kind) {
-  if (kind === "ADR") return 95;
-  if (kind === "CODE") return 80;
-  return 70;
-}
-
-function checksum(buffer) {
-  return crypto.createHash("sha256").update(buffer).digest("hex");
-}
-
-function normalizeWhitespace(value) {
-  return value.replace(/\s+/g, " ").trim();
-}
-
-function extractTitle(content, fallbackTitle) {
-  const lines = content.split(/\r?\n/);
-  for (const line of lines) {
-    const match = line.match(/^#\s+(.+)\s*$/);
-    if (match) return match[1].trim();
-  }
-
-  return fallbackTitle;
-}
-
-function parseDecisionDate(content, fallbackDate) {
-  const datePatterns = [
-    /^\s*date:\s*["']?(\d{4}-\d{2}-\d{2})["']?\s*$/im,
-    /^\s*decision[_\s-]*date:\s*["']?(\d{4}-\d{2}-\d{2})["']?\s*$/im
-  ];
-
-  for (const pattern of datePatterns) {
-    const match = content.match(pattern);
-    if (match && !Number.isNaN(Date.parse(match[1]))) {
-      return match[1];
-    }
-  }
-
-  return fallbackDate.slice(0, 10);
-}
-
-function adrTokens(adrRecord) {
-  const fileBase = path.basename(adrRecord.path).replace(path.extname(adrRecord.path), "");
-  const tokens = new Set([
-    normalizeToken(adrRecord.id),
-    normalizeToken(fileBase),
-    normalizeToken(adrRecord.title)
-  ]);
-
-  const numberMatch = fileBase.match(/(\d+)/);
-  if (numberMatch) {
-    tokens.add(normalizeToken(`adr-${numberMatch[1]}`));
-    tokens.add(normalizeToken(numberMatch[1]));
-  }
-
-  return [...tokens].filter(Boolean);
-}
-
-function findSupersedesReferences(content) {
-  const refs = new Set();
-  const pattern = /(?:supersedes|ersätter)\s*[:\-]?\s*([A-Za-z0-9._/-]+)/gi;
-  let match;
-  while ((match = pattern.exec(content)) !== null) {
-    refs.add(match[1]);
-  }
-
-  return [...refs];
-}
-
-function writeJsonl(filePath, records) {
-  const fd = fs.openSync(filePath, "w");
-  try {
-    for (const record of records) {
-      fs.writeSync(fd, `${JSON.stringify(record)}\n`, undefined, "utf8");
-    }
-  } finally {
-    fs.closeSync(fd);
-  }
-}
-
-function stageJsonl(filePath, records) {
-  const stagedPath = `${filePath}.tmp-${process.pid}-${Date.now()}`;
-  writeJsonl(stagedPath, records);
-  return {
-    commit() {
-      fs.renameSync(stagedPath, filePath);
-    },
-    discard() {
-      fs.rmSync(stagedPath, { force: true });
-    }
-  };
-}
-
-function countFileContentRecords(fileRecords) {
-  let count = 0;
-  for (const fileRecord of fileRecords) {
-    if (Object.prototype.hasOwnProperty.call(fileRecord, "content")) {
-      count += 1;
-    }
-  }
-  return count;
-}
-
-function sanitizeTsvCell(value) {
-  if (value === null || value === undefined) return "";
-  return String(value).replace(/\t/g, " ").replace(/\r?\n/g, " ");
-}
-
-function writeTsv(filePath, headers, rows) {
-  const fd = fs.openSync(filePath, "w");
-  try {
-    fs.writeSync(fd, `${headers.join("\t")}\n`, undefined, "utf8");
-    for (const row of rows) {
-      fs.writeSync(fd, `${row.map((value) => sanitizeTsvCell(value)).join("\t")}\n`, undefined, "utf8");
-    }
-  } finally {
-    fs.closeSync(fd);
-  }
-}
-
-function* mapRows(records, project) {
-  for (const record of records) {
-    yield project(record);
-  }
-}
-
-function readJsonlSafe(filePath) {
-  if (!fs.existsSync(filePath)) {
-    return [];
-  }
-
-  return fs
-    .readFileSync(filePath, "utf8")
-    .split(/\r?\n/)
-    .map((line) => line.trim())
-    .filter(Boolean)
-    .map((line) => {
-      try {
-        return JSON.parse(line);
-      } catch {
-        return null;
-      }
-    })
-    .filter((record) => record !== null);
-}
-
-function relationKey(...parts) {
-  return parts.map((part) => String(part ?? "")).join("|");
-}
-
-function uniqueRelations(relations) {
-  const deduped = new Map();
-  for (const relation of relations) {
-    const key = relationKey(relation.from, relation.to, relation.note);
-    if (!deduped.has(key)) {
-      deduped.set(key, relation);
-    }
-  }
-  return [...deduped.values()].sort((a, b) =>
-    relationKey(a.from, a.to, a.note).localeCompare(relationKey(b.from, b.to, b.note))
-  );
-}
-
-function normalizeSqlName(value) {
-  if (!value) {
-    return "";
-  }
-
-  return String(value)
-    .trim()
-    .replace(/[;"`]/g, "")
-    .replace(/\[(.+?)\]/g, "$1")
-    .replace(/\s+/g, "")
-    .replace(/^\.+|\.+$/g, "")
-    .replace(/\.\.+/g, ".")
-    .toLowerCase();
-}
-
-function sqlChunkAliases(name) {
-  const normalized = normalizeSqlName(name);
-  if (!normalized) {
-    return [];
-  }
-
-  const aliases = new Set([normalized]);
-  const parts = normalized.split(".").filter(Boolean);
-  if (parts.length > 1) {
-    aliases.add(parts[parts.length - 1]);
-  }
-  return [...aliases];
-}
-
-function configChunkAliases(chunk) {
-  const aliases = new Set();
-  const rawKey = String(chunk?.configKey ?? chunk?.name ?? "");
-  const normalizedKey = normalizeToken(rawKey);
-  if (normalizedKey) {
-    aliases.add(normalizedKey);
-  }
-  const chunkName = String(chunk?.name ?? "");
-  const tail = chunkName.split(".").pop() ?? "";
-  const normalizedTail = normalizeToken(tail);
-  if (normalizedTail) {
-    aliases.add(normalizedTail);
-  }
-  return [...aliases];
-}
-
-function namedEntryChunkAliases(chunk) {
-  const aliases = new Set();
-  const rawKey = String(chunk?.resourceKey ?? chunk?.configKey ?? chunk?.name ?? "");
-  const normalizedKey = normalizeToken(rawKey);
-  if (normalizedKey) {
-    aliases.add(normalizedKey);
-  }
-  const chunkName = String(chunk?.name ?? "");
-  const tail = chunkName.split(".").pop() ?? "";
-  const normalizedTail = normalizeToken(tail);
-  if (normalizedTail) {
-    aliases.add(normalizedTail);
-  }
-  return [...aliases];
-}
-
-function buildChunkAliasIndexes(chunkRecords) {
-  const sqlChunkIdsByAlias = new Map();
-  const configChunkIdsByAlias = new Map();
-  const resourceChunkIdsByAlias = new Map();
-  const settingChunkIdsByAlias = new Map();
-
-  for (const chunk of chunkRecords) {
-    if (isWindowChunkId(chunk?.id)) {
-      continue;
-    }
-
-    const language = String(chunk?.language ?? "").toLowerCase();
-    if (language === "sql") {
-      for (const alias of sqlChunkAliases(chunk.name)) {
-        const existing = sqlChunkIdsByAlias.get(alias) ?? [];
-        sqlChunkIdsByAlias.set(alias, [...existing, chunk.id]);
-      }
-      continue;
-    }
-
-    if (language === "config") {
-      for (const alias of configChunkAliases(chunk)) {
-        const existing = configChunkIdsByAlias.get(alias) ?? [];
-        configChunkIdsByAlias.set(alias, [...existing, chunk.id]);
-      }
-      continue;
-    }
-
-    if (language === "resource") {
-      for (const alias of namedEntryChunkAliases(chunk)) {
-        const existing = resourceChunkIdsByAlias.get(alias) ?? [];
-        resourceChunkIdsByAlias.set(alias, [...existing, chunk.id]);
-      }
-      continue;
-    }
-
-    if (language === "settings") {
-      for (const alias of namedEntryChunkAliases(chunk)) {
-        const existing = settingChunkIdsByAlias.get(alias) ?? [];
-        settingChunkIdsByAlias.set(alias, [...existing, chunk.id]);
-      }
-    }
-  }
-
-  return {
-    sqlChunkIdsByAlias,
-    configChunkIdsByAlias,
-    resourceChunkIdsByAlias,
-    settingChunkIdsByAlias
-  };
-}
-
-function extractSqlReferenceNamesFromString(text) {
-  const refs = new Set();
-
-  const normalizedName = normalizeSqlName(text);
-  if (/^[a-z0-9_.]+$/i.test(normalizedName) && normalizedName.includes(".")) {
-    refs.add(normalizedName);
-  }
-
-  for (const pattern of SQL_STRING_REFERENCE_PATTERNS) {
-    let match;
-    while ((match = pattern.exec(text)) !== null) {
-      const name = normalizeSqlName(match[1]);
-      if (!name || name.startsWith("@") || name.startsWith("#")) {
-        continue;
-      }
-      refs.add(name);
-    }
-  }
-
-  return [...refs];
-}
-
-function parseResxSqlReferenceMap(content) {
-  const refsByKey = new Map();
-  const dataPattern = /<data\b[^>]*\bname="([^"]+)"[^>]*>([\s\S]*?)<\/data>/gi;
-  let match;
-
-  while ((match = dataPattern.exec(content)) !== null) {
-    const key = normalizeToken(decodeXmlEntities(match[1]));
-    if (!key) {
-      continue;
-    }
-
-    const valueMatch = match[2].match(/<value>([\s\S]*?)<\/value>/i);
-    if (!valueMatch) {
-      continue;
-    }
-
-    const value = decodeXmlEntities(valueMatch[1]).trim();
-    const refs = extractSqlReferenceNamesFromString(value);
-    if (refs.length === 0) {
-      continue;
-    }
-
-    const existing = refsByKey.get(key) ?? [];
-    refsByKey.set(key, uniqueSorted([...existing, ...refs]));
-  }
-
-  return refsByKey;
-}
-
-function parseResxKeyMap(content) {
-  const fileKeys = new Map();
-  const dataPattern = /<data\b[^>]*\bname="([^"]+)"[^>]*>/gi;
-  let match;
-
-  while ((match = dataPattern.exec(content)) !== null) {
-    const key = normalizeToken(decodeXmlEntities(match[1]));
-    if (!key) {
-      continue;
-    }
-    fileKeys.set(key, true);
-  }
-
-  return fileKeys;
-}
-
-function parseSettingsSqlReferenceMap(content) {
-  const refsByKey = new Map();
-  const settingPattern = /<Setting\b[^>]*\bName="([^"]+)"[^>]*>([\s\S]*?)<\/Setting>/gi;
-  let match;
-
-  while ((match = settingPattern.exec(content)) !== null) {
-    const key = normalizeToken(decodeXmlEntities(match[1]));
-    if (!key) {
-      continue;
-    }
-
-    const valueMatch = match[2].match(/<Value(?:\s[^>]*)?>([\s\S]*?)<\/Value>/i);
-    if (!valueMatch) {
-      continue;
-    }
-
-    const value = decodeXmlEntities(valueMatch[1]).trim();
-    const refs = extractSqlReferenceNamesFromString(value);
-    if (refs.length === 0) {
-      continue;
-    }
-
-    const existing = refsByKey.get(key) ?? [];
-    refsByKey.set(key, uniqueSorted([...existing, ...refs]));
-  }
-
-  return refsByKey;
-}
-
-function parseSettingsKeyMap(content) {
-  const fileKeys = new Map();
-  const settingPattern = /<Setting\b[^>]*\bName="([^"]+)"[^>]*>/gi;
-  let match;
-
-  while ((match = settingPattern.exec(content)) !== null) {
-    const key = normalizeToken(decodeXmlEntities(match[1]));
-    if (!key) {
-      continue;
-    }
-    fileKeys.set(key, true);
-  }
-
-  return fileKeys;
-}
-
-function parseConfigKeyMap(content) {
-  const fileKeys = new Map();
-  const addPattern = /<add\b([^>]+?)\/?>/gi;
-  let match;
-
-  while ((match = addPattern.exec(content)) !== null) {
-    const attributes = match[1];
-    const nameMatch = attributes.match(/\bname="([^"]+)"/i);
-    const keyMatch = attributes.match(/\bkey="([^"]+)"/i);
-    const normalized = normalizeToken(decodeXmlEntities(nameMatch?.[1] ?? keyMatch?.[1] ?? ""));
-    if (!normalized) {
-      continue;
-    }
-    fileKeys.set(normalized, true);
-  }
-
-  return fileKeys;
-}
-
-function buildSqlResourceReferenceMap(fileRecords) {
-  const refsByKey = new Map();
-
-  for (const fileRecord of fileRecords) {
-    const ext = path.extname(fileRecord.path).toLowerCase();
-    let fileRefs = null;
-    if (ext === ".resx") {
-      fileRefs = parseResxSqlReferenceMap(fileRecord.content);
-    } else if (ext === ".settings") {
-      fileRefs = parseSettingsSqlReferenceMap(fileRecord.content);
-    }
-
-    if (!fileRefs) {
-      continue;
-    }
-
-    for (const [key, refs] of fileRefs.entries()) {
-      const existing = refsByKey.get(key) ?? [];
-      refsByKey.set(key, uniqueSorted([...existing, ...refs]));
-    }
-  }
-
-  return refsByKey;
-}
-
-function buildNamedResourceFileMaps(fileRecords) {
-  const resourceFilesByKey = new Map();
-  const settingFilesByKey = new Map();
-  const configFilesByKey = new Map();
-
-  for (const fileRecord of fileRecords) {
-    const ext = path.extname(fileRecord.path).toLowerCase();
-    const keyMap =
-      ext === ".resx"
-        ? parseResxKeyMap(fileRecord.content)
-        : ext === ".settings"
-          ? parseSettingsKeyMap(fileRecord.content)
-          : ext === ".config"
-            ? parseConfigKeyMap(fileRecord.content)
-          : null;
-
-    if (!keyMap) {
-      continue;
-    }
-
-    for (const key of keyMap.keys()) {
-      const targetMap =
-        ext === ".resx" ? resourceFilesByKey : ext === ".settings" ? settingFilesByKey : configFilesByKey;
-      const list = targetMap.get(key) ?? [];
-      list.push(fileRecord.id);
-      targetMap.set(key, uniqueSorted(list));
-    }
-  }
-
-  return { resourceFilesByKey, settingFilesByKey, configFilesByKey };
-}
-
-function extractSqlResourceKeyReferences(content) {
-  const keys = new Set();
-
-  for (const pattern of SQL_RESOURCE_KEY_PATTERNS) {
-    let match;
-    while ((match = pattern.exec(content)) !== null) {
-      const key = normalizeToken(match[1]);
-      if (key) {
-        keys.add(key);
-      }
-    }
-  }
-
-  return [...keys];
-}
-
-function extractConfigKeyReferences(content) {
-  const keys = new Set();
-
-  for (const pattern of CONFIG_KEY_REFERENCE_PATTERNS) {
-    let match;
-    while ((match = pattern.exec(content)) !== null) {
-      const key = normalizeToken(match[1]);
-      if (key) {
-        keys.add(key);
-      }
-    }
-  }
-
-  return [...keys];
-}
-
-function shouldExtractNamedResourceReferences(filePath) {
-  return NAMED_RESOURCE_REFERENCE_SOURCE_EXTENSIONS.has(path.extname(filePath).toLowerCase());
-}
-
-function generateNamedResourceRelations(fileRecords) {
-  const { resourceFilesByKey, settingFilesByKey, configFilesByKey } = buildNamedResourceFileMaps(fileRecords);
-  const usesResourceRelations = [];
-  const usesSettingRelations = [];
-  const usesConfigRelations = [];
-  const resourceSeen = new Set();
-  const settingSeen = new Set();
-  const configSeen = new Set();
-
-  for (const fileRecord of fileRecords) {
-    if (!shouldExtractNamedResourceReferences(fileRecord.path)) {
-      continue;
-    }
-
-    for (const key of extractSqlResourceKeyReferences(fileRecord.content)) {
-      for (const targetFileId of resourceFilesByKey.get(key) ?? []) {
-        const relKey = relationKey(fileRecord.id, targetFileId, key);
-        if (!resourceSeen.has(relKey) && fileRecord.id !== targetFileId) {
-          resourceSeen.add(relKey);
-          usesResourceRelations.push({
-            from: fileRecord.id,
-            to: targetFileId,
-            note: key
-          });
-        }
-      }
-
-      for (const targetFileId of settingFilesByKey.get(key) ?? []) {
-        const relKey = relationKey(fileRecord.id, targetFileId, key);
-        if (!settingSeen.has(relKey) && fileRecord.id !== targetFileId) {
-          settingSeen.add(relKey);
-          usesSettingRelations.push({
-            from: fileRecord.id,
-            to: targetFileId,
-            note: key
-          });
-        }
-      }
-    }
-
-    for (const key of extractConfigKeyReferences(fileRecord.content)) {
-      for (const targetFileId of configFilesByKey.get(key) ?? []) {
-        const relKey = relationKey(fileRecord.id, targetFileId, key);
-        if (!configSeen.has(relKey) && fileRecord.id !== targetFileId) {
-          configSeen.add(relKey);
-          usesConfigRelations.push({
-            from: fileRecord.id,
-            to: targetFileId,
-            note: key
-          });
-        }
-      }
-    }
-  }
-
-  usesResourceRelations.sort((a, b) =>
-    relationKey(a.from, a.to, a.note).localeCompare(relationKey(b.from, b.to, b.note))
-  );
-  usesSettingRelations.sort((a, b) =>
-    relationKey(a.from, a.to, a.note).localeCompare(relationKey(b.from, b.to, b.note))
-  );
-  usesConfigRelations.sort((a, b) =>
-    relationKey(a.from, a.to, a.note).localeCompare(relationKey(b.from, b.to, b.note))
-  );
-
-  return { usesResourceRelations, usesSettingRelations, usesConfigRelations };
-}
-
-function parseConfigIncludeTargets(fileRecord) {
-  const relPath = toPosixPath(String(fileRecord?.path ?? "").trim());
-  const lowerPath = relPath.toLowerCase();
-  if (!lowerPath.endsWith(".config")) {
-    return [];
-  }
-
-  const content = String(fileRecord?.content ?? "");
-  const dir = path.posix.dirname(relPath);
-  const includes = [];
-  const sectionPattern =
-    /<([A-Za-z_][A-Za-z0-9_.:-]*)\b([^>]*?)\b(configSource|file)="([^"]+)"([^>]*)>/gi;
-  let match;
-
-  while ((match = sectionPattern.exec(content)) !== null) {
-    const sectionName = String(match[1] ?? "").trim().toLowerCase();
-    const attributeName = String(match[3] ?? "").trim().toLowerCase();
-    const includePath = decodeXmlEntities(match[4] ?? "").trim().replace(/\\/g, "/");
-    if (!sectionName || !attributeName || !includePath) {
-      continue;
-    }
-    if (includePath.startsWith("/") || includePath.startsWith("~")) {
-      continue;
-    }
-
-    const resolvedPath = path.posix.normalize(dir === "." ? includePath : `${dir}/${includePath}`);
-    if (!resolvedPath || resolvedPath.startsWith("../")) {
-      continue;
-    }
-
-    includes.push({
-      targetPath: resolvedPath,
-      note: `${sectionName}:${attributeName}`
-    });
-  }
-
-  return includes;
-}
-
-function generateConfigIncludeRelations(fileRecords) {
-  const fileIdByPath = new Map(fileRecords.map((record) => [toPosixPath(record.path), record.id]));
-  const relations = [];
-  const seen = new Set();
-
-  for (const fileRecord of fileRecords) {
-    for (const include of parseConfigIncludeTargets(fileRecord)) {
-      const targetFileId = fileIdByPath.get(include.targetPath);
-      if (!targetFileId || targetFileId === fileRecord.id) {
-        continue;
-      }
-      const key = relationKey(fileRecord.id, targetFileId, include.note);
-      if (seen.has(key)) {
-        continue;
-      }
-      seen.add(key);
-      relations.push({
-        from: fileRecord.id,
-        to: targetFileId,
-        note: include.note
-      });
-    }
-  }
-
-  relations.sort((a, b) => relationKey(a.from, a.to, a.note).localeCompare(relationKey(b.from, b.to, b.note)));
-  return relations;
-}
-
-function parseSectionHandlerDeclarations(content) {
-  const declarations = [];
-  const sectionPattern = /<section\b([^>]*?)\/?>/gi;
-  let match;
-
-  while ((match = sectionPattern.exec(String(content ?? ""))) !== null) {
-    const attrs = match[1] ?? "";
-    const nameMatch = attrs.match(/\bname="([^"]+)"/i);
-    const typeMatch = attrs.match(/\btype="([^"]+)"/i);
-    const sectionName = normalizeToken(decodeXmlEntities(nameMatch?.[1] ?? ""));
-    const typeValue = decodeXmlEntities(typeMatch?.[1] ?? "").trim();
-    if (!sectionName || !typeValue) {
-      continue;
-    }
-
-    const typeParts = typeValue.split(",").map((part) => part.trim()).filter(Boolean);
-    const fullTypeName = typeParts[0] ?? "";
-    const assemblyName = typeParts[1] ?? "";
-    const shortTypeName = fullTypeName.split(".").pop()?.split("+").pop() ?? "";
-    const normalizedTypeName = normalizeToken(shortTypeName);
-    const normalizedAssemblyName = normalizeToken(assemblyName);
-    if (!normalizedTypeName && !normalizedAssemblyName) {
-      continue;
-    }
-
-    declarations.push({
-      sectionName,
-      normalizedTypeName,
-      normalizedAssemblyName
-    });
-  }
-
-  return declarations;
-}
-
-function buildProjectAssemblyFileMap(fileRecords) {
-  const aliasMap = new Map();
-
-  for (const fileRecord of fileRecords) {
-    const ext = path.extname(fileRecord.path).toLowerCase();
-    if (!PROJECT_DEFINITION_EXTENSIONS.has(ext) || ext === ".sln") {
-      continue;
-    }
-
-    const aliases = uniqueSorted([
-      normalizeToken(extractXmlTagValue(fileRecord.content, "AssemblyName")),
-      normalizeToken(extractXmlTagValue(fileRecord.content, "RootNamespace")),
-      normalizeToken(path.basename(fileRecord.path, ext))
-    ].filter(Boolean));
-
-    for (const alias of aliases) {
-      const existing = aliasMap.get(alias) ?? [];
-      aliasMap.set(alias, uniqueSorted([...existing, fileRecord.id]));
-    }
-  }
-
-  return aliasMap;
-}
-
-function extractDeclaredTypeNames(fileRecord) {
-  const ext = path.extname(fileRecord.path).toLowerCase();
-  const pattern =
-    ext === ".vb"
-      ? /\b(?:Public|Friend|Private|Protected|Partial|MustInherit|NotInheritable|Shadows|Default|Overridable|Overrides|Shared|\s)*(?:Class|Module|Structure|Interface|Enum)\s+([A-Za-z_][A-Za-z0-9_]*)/gi
-      : ext === ".cs"
-        ? /\b(?:public|internal|private|protected|abstract|sealed|static|partial|\s)*(?:class|struct|interface|enum)\s+([A-Za-z_][A-Za-z0-9_]*)/gi
-        : null;
-
-  if (!pattern) {
-    return [];
-  }
-
-  const typeNames = new Set();
-  let match;
-  while ((match = pattern.exec(String(fileRecord.content ?? ""))) !== null) {
-    const normalized = normalizeToken(match[1] ?? "");
-    if (normalized) {
-      typeNames.add(normalized);
-    }
-  }
-
-  return [...typeNames];
-}
-
-function buildCodeTypeFileMap(fileRecords) {
-  const typeMap = new Map();
-
-  for (const fileRecord of fileRecords) {
-    if (fileRecord.kind !== "CODE") {
-      continue;
-    }
-    for (const typeName of extractDeclaredTypeNames(fileRecord)) {
-      const existing = typeMap.get(typeName) ?? [];
-      typeMap.set(typeName, uniqueSorted([...existing, fileRecord.id]));
-    }
-  }
-
-  return typeMap;
-}
-
-function longestCommonPathPrefixLength(pathA, pathB) {
-  const partsA = toPosixPath(pathA).split("/").filter(Boolean);
-  const partsB = toPosixPath(pathB).split("/").filter(Boolean);
-  const limit = Math.min(partsA.length, partsB.length);
-  let count = 0;
-  while (count < limit && partsA[count] === partsB[count]) {
-    count += 1;
-  }
-  return count;
-}
-
-function generateMachineConfigRelations(fileRecords) {
-  const machineConfigs = fileRecords.filter(
-    (record) => path.basename(record.path).toLowerCase() === "machine.config"
-  );
-  if (machineConfigs.length === 0) {
-    return [];
-  }
-
-  const relations = [];
-  const seen = new Set();
-
-  for (const fileRecord of fileRecords) {
-    const lowerPath = fileRecord.path.toLowerCase();
-    if (
-      !lowerPath.endsWith(".config") ||
-      path.basename(lowerPath) === "machine.config" ||
-      !/<configuration\b/i.test(String(fileRecord.content ?? "")) ||
-      parseConfigTransformTarget(fileRecord)
-    ) {
-      continue;
-    }
-
-    const rankedTargets = machineConfigs
-      .filter((candidate) => candidate.id !== fileRecord.id)
-      .map((candidate) => ({
-        id: candidate.id,
-        score: longestCommonPathPrefixLength(fileRecord.path, candidate.path)
-      }))
-      .sort((a, b) => b.score - a.score || a.id.localeCompare(b.id));
-
-    const target = rankedTargets[0];
-    if (!target) {
-      continue;
-    }
-
-    const key = relationKey(fileRecord.id, target.id, "inherits:machine");
-    if (seen.has(key)) {
-      continue;
-    }
-    seen.add(key);
-    relations.push({
-      from: fileRecord.id,
-      to: target.id,
-      note: "inherits:machine"
-    });
-  }
-
-  return uniqueRelations(relations);
-}
-
-function generateSectionHandlerRelations(fileRecords) {
-  const projectAssemblyFileMap = buildProjectAssemblyFileMap(fileRecords);
-  const codeTypeFileMap = buildCodeTypeFileMap(fileRecords);
-  const relations = [];
-
-  for (const fileRecord of fileRecords) {
-    if (!fileRecord.path.toLowerCase().endsWith(".config")) {
-      continue;
-    }
-
-    for (const declaration of parseSectionHandlerDeclarations(fileRecord.content)) {
-      const note = `section_handler:${declaration.sectionName}`;
-
-      for (const targetFileId of projectAssemblyFileMap.get(declaration.normalizedAssemblyName) ?? []) {
-        relations.push({
-          from: fileRecord.id,
-          to: targetFileId,
-          note
-        });
-      }
-
-      for (const targetFileId of codeTypeFileMap.get(declaration.normalizedTypeName) ?? []) {
-        relations.push({
-          from: fileRecord.id,
-          to: targetFileId,
-          note
-        });
-      }
-    }
-  }
-
-  return uniqueRelations(relations.filter((relation) => relation.from !== relation.to));
-}
-
-function generateConfigTransformKeyRelations(fileRecords, chunkRecords) {
-  const fileIdByPath = new Map(fileRecords.map((record) => [toPosixPath(record.path), record.id]));
-  const chunkFileIdById = new Map(chunkRecords.map((chunk) => [chunk.id, chunk.file_id]));
-  const configChunkIdsByAlias = new Map();
-
-  for (const chunk of chunkRecords) {
-    if (isWindowChunkId(chunk.id) || String(chunk.language ?? "").toLowerCase() !== "config") {
-      continue;
-    }
-    for (const alias of configChunkAliases(chunk)) {
-      const existing = configChunkIdsByAlias.get(alias) ?? [];
-      configChunkIdsByAlias.set(alias, [...existing, chunk.id]);
-    }
-  }
-
-  const relations = [];
-  for (const fileRecord of fileRecords) {
-    const transform = parseConfigTransformTarget(fileRecord);
-    if (!transform) {
-      continue;
-    }
-
-    const targetFileId = fileIdByPath.get(transform.targetPath);
-    if (!targetFileId) {
-      continue;
-    }
-
-    for (const key of parseConfigKeyMap(fileRecord.content).keys()) {
-      for (const targetChunkId of configChunkIdsByAlias.get(key) ?? []) {
-        if (chunkFileIdById.get(targetChunkId) !== targetFileId) {
-          continue;
-        }
-        relations.push({
-          from: fileRecord.id,
-          to: targetChunkId,
-          note: `${key}:${transform.environment}`
-        });
-      }
-    }
-  }
-
-  return uniqueRelations(relations);
-}
-
-function parseConfigTransformTarget(fileRecord) {
-  const relPath = toPosixPath(String(fileRecord?.path ?? "").trim());
-  const lowerPath = relPath.toLowerCase();
-  if (!lowerPath.endsWith(".config")) {
-    return null;
-  }
-
-  const content = String(fileRecord?.content ?? "");
-  if (!/\bxdt:(?:transform|locator)\b/i.test(content) && !/\bxmlns:xdt=/i.test(content)) {
-    return null;
-  }
-
-  const dir = path.posix.dirname(relPath);
-  const baseName = path.posix.basename(relPath, ".config");
-  const match = baseName.match(/^(.+)\.([^.]+)$/);
-  if (!match) {
-    return null;
-  }
-
-  const baseStem = match[1]?.trim();
-  const environment = match[2]?.trim();
-  if (!baseStem || !environment) {
-    return null;
-  }
-
-  const targetPath = dir === "." ? `${baseStem}.config` : `${dir}/${baseStem}.config`;
-  return {
-    targetPath,
-    environment: normalizeToken(environment)
-  };
-}
-
-function generateConfigTransformRelations(fileRecords) {
-  const fileIdByPath = new Map(fileRecords.map((record) => [toPosixPath(record.path), record.id]));
-  const relations = [];
-  const seen = new Set();
-
-  for (const fileRecord of fileRecords) {
-    const transform = parseConfigTransformTarget(fileRecord);
-    if (!transform) {
-      continue;
-    }
-
-    const targetFileId = fileIdByPath.get(transform.targetPath);
-    if (!targetFileId || targetFileId === fileRecord.id) {
-      continue;
-    }
-
-    const key = relationKey(fileRecord.id, targetFileId, transform.environment);
-    if (seen.has(key)) {
-      continue;
-    }
-    seen.add(key);
-    relations.push({
-      from: fileRecord.id,
-      to: targetFileId,
-      note: transform.environment
-    });
-  }
-
-  relations.sort((a, b) => relationKey(a.from, a.to, a.note).localeCompare(relationKey(b.from, b.to, b.note)));
-  return relations;
-}
-
-function shouldExtractSqlReferences(filePath) {
-  return SQL_REFERENCE_SOURCE_EXTENSIONS.has(path.extname(filePath).toLowerCase());
-}
-
-function extractSqlObjectReferencesFromContent(content, filePath = "", sqlResourceReferenceMap = new Map()) {
-  const refs = new Set();
-  const ext = path.extname(filePath).toLowerCase();
-
-  if (ext === ".resx") {
-    for (const values of parseResxSqlReferenceMap(content).values()) {
-      for (const ref of values) {
-        refs.add(ref);
-      }
-    }
-  } else if (ext === ".settings") {
-    for (const values of parseSettingsSqlReferenceMap(content).values()) {
-      for (const ref of values) {
-        refs.add(ref);
-      }
-    }
-  }
-
-  for (const pattern of SQL_OBJECT_REFERENCE_PATTERNS) {
-    let match;
-    while ((match = pattern.exec(content)) !== null) {
-      for (const ref of extractSqlReferenceNamesFromString(match[1])) {
-        refs.add(ref);
-      }
-    }
-  }
-
-  if (sqlResourceReferenceMap.size > 0) {
-    for (const key of extractSqlResourceKeyReferences(content)) {
-      for (const ref of sqlResourceReferenceMap.get(key) ?? []) {
-        refs.add(ref);
-      }
-    }
-  }
-
-  return uniqueSorted([...refs]);
-}
-
-function decodeXmlEntities(value) {
-  return String(value)
-    .replace(/&quot;/g, '"')
-    .replace(/&apos;/g, "'")
-    .replace(/&lt;/g, "<")
-    .replace(/&gt;/g, ">")
-    .replace(/&amp;/g, "&");
-}
-
-function projectIdFor(filePath) {
-  return `project:${filePath}`;
-}
-
-function isProjectDefinitionFile(filePath) {
-  return PROJECT_DEFINITION_EXTENSIONS.has(path.extname(filePath).toLowerCase());
-}
-
-function resolveProjectRelativePath(baseFilePath, includePath) {
-  if (!includePath) {
-    return null;
-  }
-
-  const normalizedInclude = toPosixPath(decodeXmlEntities(includePath).trim().replace(/\\/g, "/"));
-  if (!normalizedInclude) {
-    return null;
-  }
-
-  const resolved = path.resolve(REPO_ROOT, path.dirname(baseFilePath), normalizedInclude);
-  const relPath = toPosixPath(path.relative(REPO_ROOT, resolved));
-  if (!relPath || relPath.startsWith("../")) {
-    return null;
-  }
-
-  return relPath;
-}
-
-function projectLanguageForExtension(ext) {
-  switch (ext) {
-    case ".vbproj":
-      return "vbnet";
-    case ".csproj":
-      return "csharp";
-    case ".fsproj":
-      return "fsharp";
-    case ".vcxproj":
-      return "cpp";
-    case ".sln":
-      return "solution";
-    default:
-      return "dotnet";
-  }
-}
-
-function extractXmlTagValue(content, tagName) {
-  const match = content.match(new RegExp(`<${tagName}>([\\s\\S]*?)<\\/${tagName}>`, "i"));
-  return match ? decodeXmlEntities(match[1]).trim() : "";
-}
-
-function collectXmlIncludeValues(content, elementNames) {
-  const values = [];
-  const pattern = new RegExp(
-    `<(?:${elementNames.join("|")})\\b[^>]*\\bInclude="([^"]+)"[^>]*\\/?>`,
-    "gi"
-  );
-  let match;
-  while ((match = pattern.exec(content)) !== null) {
-    values.push(decodeXmlEntities(match[1]).trim());
-  }
-  return values;
-}
-
-function parseSolutionProject(fileRecord, indexedFileIds) {
-  const declaredMembers = [];
-  const referencesProjectRelations = [];
-  const includesFileRelations = [];
-  const fileRelationKeys = new Set();
-  const ext = path.extname(fileRecord.path).toLowerCase();
-  const fallbackName = path.basename(fileRecord.path, ext);
-  const projectPattern =
-    /^Project\([^)]*\)\s*=\s*"([^"]+)",\s*"([^"]+\.(?:vbproj|csproj|fsproj|vcxproj))",\s*"\{[^"]+\}"$/gim;
-
-  let match;
-  while ((match = projectPattern.exec(fileRecord.content)) !== null) {
-    const memberName = match[1].trim();
-    const memberPath = resolveProjectRelativePath(fileRecord.path, match[2]);
-    if (!memberPath) {
-      continue;
-    }
-    declaredMembers.push({ name: memberName, path: memberPath });
-    const targetId = projectIdFor(memberPath);
-    if (indexedFileIds.has(`file:${memberPath}`)) {
-      referencesProjectRelations.push({
-        from: projectIdFor(fileRecord.path),
-        to: targetId,
-        note: `solution_member:${memberName}`
-      });
-    }
-  }
-
-  for (const fileId of [`file:${fileRecord.path}`]) {
-    if (indexedFileIds.has(fileId) && !fileRelationKeys.has(fileId)) {
-      fileRelationKeys.add(fileId);
-      includesFileRelations.push({ from: projectIdFor(fileRecord.path), to: fileId });
-    }
-  }
-
-  const summaryParts = [`Solution ${fallbackName}`];
-  if (declaredMembers.length > 0) {
-    summaryParts.push(`Contains ${declaredMembers.length} project references`);
-  }
-
-  return {
-    project: {
-      id: projectIdFor(fileRecord.path),
-      path: fileRecord.path,
-      name: fallbackName,
-      kind: "solution",
-      language: projectLanguageForExtension(ext),
-      target_framework: "",
-      summary: `${summaryParts.join(". ")}.`,
-      file_count: includesFileRelations.length,
-      updated_at: fileRecord.updated_at,
-      source_of_truth: false,
-      trust_level: 78,
-      status: "active"
-    },
-    includesFileRelations,
-    referencesProjectRelations
-  };
-}
-
-function parseDotNetProject(fileRecord, indexedFileIds) {
-  const ext = path.extname(fileRecord.path).toLowerCase();
-  const fallbackName = path.basename(fileRecord.path, ext);
-  const assemblyName = extractXmlTagValue(fileRecord.content, "AssemblyName");
-  const rootNamespace = extractXmlTagValue(fileRecord.content, "RootNamespace");
-  const targetFrameworkRaw =
-    extractXmlTagValue(fileRecord.content, "TargetFramework") ||
-    extractXmlTagValue(fileRecord.content, "TargetFrameworkVersion") ||
-    extractXmlTagValue(fileRecord.content, "TargetFrameworks");
-  const targetFramework = targetFrameworkRaw.split(";")[0].trim();
-  const includeCandidates = collectXmlIncludeValues(fileRecord.content, [
-    "Compile",
-    "Content",
-    "EmbeddedResource",
-    "None",
-    "Page",
-    "ApplicationDefinition"
-  ]);
-  const projectReferenceCandidates = collectXmlIncludeValues(fileRecord.content, ["ProjectReference"]);
-  const includesFileRelations = [];
-  const referencesProjectRelations = [];
-  const fileRelationKeys = new Set();
-
-  const addFileRelation = (relPath) => {
-    const fileId = `file:${relPath}`;
-    if (!indexedFileIds.has(fileId) || fileRelationKeys.has(fileId)) {
-      return;
-    }
-    fileRelationKeys.add(fileId);
-    includesFileRelations.push({
-      from: projectIdFor(fileRecord.path),
-      to: fileId
-    });
-  };
-
-  addFileRelation(fileRecord.path);
-
-  for (const includePath of includeCandidates) {
-    const relPath = resolveProjectRelativePath(fileRecord.path, includePath);
-    if (!relPath) {
-      continue;
-    }
-    addFileRelation(relPath);
-  }
-
-  for (const includePath of projectReferenceCandidates) {
-    const relPath = resolveProjectRelativePath(fileRecord.path, includePath);
-    if (!relPath) {
-      continue;
-    }
-    const targetFileId = `file:${relPath}`;
-    if (!indexedFileIds.has(targetFileId)) {
-      continue;
-    }
-    referencesProjectRelations.push({
-      from: projectIdFor(fileRecord.path),
-      to: projectIdFor(relPath),
-      note: includePath
-    });
-  }
-
-  const summaryParts = [
-    `${projectLanguageForExtension(ext).toUpperCase()} project ${assemblyName || rootNamespace || fallbackName}`
-  ];
-  if (targetFramework) {
-    summaryParts.push(`Target framework ${targetFramework}`);
-  }
-  if (includesFileRelations.length > 1) {
-    summaryParts.push(`Includes ${includesFileRelations.length - 1} indexed project files`);
-  }
-  if (referencesProjectRelations.length > 0) {
-    summaryParts.push(`References ${referencesProjectRelations.length} projects`);
-  }
-
-  return {
-    project: {
-      id: projectIdFor(fileRecord.path),
-      path: fileRecord.path,
-      name: assemblyName || rootNamespace || fallbackName,
-      kind: "project",
-      language: projectLanguageForExtension(ext),
-      target_framework: targetFramework,
-      summary: `${summaryParts.join(". ")}.`,
-      file_count: includesFileRelations.length,
-      updated_at: fileRecord.updated_at,
-      source_of_truth: false,
-      trust_level: 80,
-      status: "active"
-    },
-    includesFileRelations,
-    referencesProjectRelations
-  };
-}
-
-function generateProjects(fileRecords) {
-  const indexedFileIds = new Set(fileRecords.map((record) => record.id));
-  const projectRecords = [];
-  const includesFileRelations = [];
-  const referencesProjectRelations = [];
-  const includeKeys = new Set();
-  const referenceKeys = new Set();
-
-  for (const fileRecord of fileRecords) {
-    if (!isProjectDefinitionFile(fileRecord.path)) {
-      continue;
-    }
-
-    const ext = path.extname(fileRecord.path).toLowerCase();
-    const parsed =
-      ext === ".sln"
-        ? parseSolutionProject(fileRecord, indexedFileIds)
-        : parseDotNetProject(fileRecord, indexedFileIds);
-
-    projectRecords.push(parsed.project);
-
-    for (const relation of parsed.includesFileRelations) {
-      const key = relationKey(relation.from, relation.to);
-      if (includeKeys.has(key)) {
-        continue;
-      }
-      includeKeys.add(key);
-      includesFileRelations.push(relation);
-    }
-
-    for (const relation of parsed.referencesProjectRelations) {
-      const key = relationKey(relation.from, relation.to, relation.note);
-      if (referenceKeys.has(key)) {
-        continue;
-      }
-      referenceKeys.add(key);
-      referencesProjectRelations.push(relation);
-    }
-  }
-
-  projectRecords.sort((a, b) => a.path.localeCompare(b.path));
-  includesFileRelations.sort((a, b) => relationKey(a.from, a.to).localeCompare(relationKey(b.from, b.to)));
-  referencesProjectRelations.sort((a, b) =>
-    relationKey(a.from, a.to, a.note).localeCompare(relationKey(b.from, b.to, b.note))
-  );
-
-  return {
-    projects: projectRecords,
-    includesFileRelations,
-    referencesProjectRelations
-  };
-}
-
-function removeChunkStateForFile(fileId, chunkRecordMap, definesRelationMap, callsRelationMap, importsRelationMap, callsSqlRelationMap) {
-  const removedChunkIds = new Set();
-
-  for (const [chunkId, chunkRecord] of chunkRecordMap.entries()) {
-    if (chunkRecord.file_id === fileId) {
-      removedChunkIds.add(chunkId);
-      chunkRecordMap.delete(chunkId);
-    }
-  }
-
-  if (removedChunkIds.size === 0) {
-    return;
-  }
-
-  for (const [key, relation] of definesRelationMap.entries()) {
-    if (relation.from === fileId || removedChunkIds.has(relation.to)) {
-      definesRelationMap.delete(key);
-    }
-  }
-
-  for (const [key, relation] of callsRelationMap.entries()) {
-    if (removedChunkIds.has(relation.from) || removedChunkIds.has(relation.to)) {
-      callsRelationMap.delete(key);
-    }
-  }
-
-  for (const [key, relation] of importsRelationMap.entries()) {
-    if (removedChunkIds.has(relation.from)) {
-      importsRelationMap.delete(key);
-    }
-  }
-
-  for (const [key, relation] of callsSqlRelationMap.entries()) {
-    if (relation.from === fileId || removedChunkIds.has(relation.to)) {
-      callsSqlRelationMap.delete(key);
-    }
-  }
-}
-
-function hydrateIncrementalChunkState(fileRecords) {
-  const fileIdSet = new Set(fileRecords.map((record) => record.id));
-  const chunkRecordMap = new Map();
-  const definesRelationMap = new Map();
-  const callsRelationMap = new Map();
-  const importsRelationMap = new Map();
-  const callsSqlRelationMap = new Map();
-
-  for (const record of readJsonlSafe(path.join(CACHE_DIR, "entities.chunk.jsonl"))) {
-    if (!record || typeof record !== "object") continue;
-    const chunkId = String(record.id ?? "");
-    const fileId = String(record.file_id ?? "");
-    if (!chunkId || !fileIdSet.has(fileId)) {
-      continue;
-    }
-    chunkRecordMap.set(chunkId, {
-      ...record,
-      id: chunkId,
-      file_id: fileId
-    });
-  }
-
-  const chunkIdSet = new Set(chunkRecordMap.keys());
-
-  for (const record of readJsonlSafe(path.join(CACHE_DIR, "relations.defines.jsonl"))) {
-    if (!record || typeof record !== "object") continue;
-    const from = String(record.from ?? "");
-    const to = String(record.to ?? "");
-    if (!fileIdSet.has(from) || !chunkIdSet.has(to)) {
-      continue;
-    }
-    definesRelationMap.set(relationKey(from, to), { from, to });
-  }
-
-  for (const record of readJsonlSafe(path.join(CACHE_DIR, "relations.calls.jsonl"))) {
-    if (!record || typeof record !== "object") continue;
-    const from = String(record.from ?? "");
-    const to = String(record.to ?? "");
-    const callType = String(record.call_type ?? "direct");
-    if (!chunkIdSet.has(from) || !chunkIdSet.has(to)) {
-      continue;
-    }
-    callsRelationMap.set(relationKey(from, to, callType), {
-      from,
-      to,
-      call_type: callType
-    });
-  }
-
-  for (const record of readJsonlSafe(path.join(CACHE_DIR, "relations.imports.jsonl"))) {
-    if (!record || typeof record !== "object") continue;
-    const from = String(record.from ?? "");
-    const to = String(record.to ?? "");
-    const importName = String(record.import_name ?? "");
-    if (!chunkIdSet.has(from) || !fileIdSet.has(to)) {
-      continue;
-    }
-    importsRelationMap.set(relationKey(from, to, importName), {
-      from,
-      to,
-      import_name: importName
-    });
-  }
-
-  for (const record of readJsonlSafe(path.join(CACHE_DIR, "relations.calls_sql.jsonl"))) {
-    if (!record || typeof record !== "object") continue;
-    const from = String(record.from ?? "");
-    const to = String(record.to ?? "");
-    const note = String(record.note ?? "");
-    if (!fileIdSet.has(from) || !chunkIdSet.has(to)) {
-      continue;
-    }
-    callsSqlRelationMap.set(relationKey(from, to, note), {
-      from,
-      to,
-      note
-    });
-  }
-
-  return {
-    chunkRecordMap,
-    definesRelationMap,
-    callsRelationMap,
-    importsRelationMap,
-    callsSqlRelationMap
-  };
-}
-
-function normalizeRuleTokens(ruleRecord) {
-  const idParts = ruleRecord.id.split(/[._-]+/g);
-  const descriptionTokens = tokenizeKeywords(ruleRecord.body);
-  const rawKeywords = [...idParts, ...descriptionTokens];
-  const normalized = rawKeywords
-    .map((token) => token.toLowerCase().replace(/[^a-z0-9]/g, ""))
-    .filter((token) => token.length >= 3 && !STOP_WORDS.has(token));
-
-  return uniqueSorted(normalized).slice(0, RULE_KEYWORD_LIMIT);
-}
-
-function fileTokenSet(fileRecord) {
-  const tokenSource = `${fileRecord.path}\n${fileRecord.content.slice(0, 12000)}`;
-  return new Set(tokenizeKeywords(tokenSource));
-}
-
-function collectRuleKeywordMatch(ruleKeywords, tokens, minimumMatches) {
-  const required = Math.min(minimumMatches, Math.max(1, ruleKeywords.length));
-  let count = 0;
-  const sample = [];
-
-  for (const keyword of ruleKeywords) {
-    if (!tokens.has(keyword)) {
-      continue;
-    }
-    count += 1;
-    if (sample.length < 5) {
-      sample.push(keyword);
-    }
-    if (count >= required && sample.length >= 5) {
-      break;
-    }
-  }
-
-  return { matched: count >= required, sample };
-}
-
-function chunkIdFor(filePath, chunk) {
-  const startLine = Number.isFinite(chunk.startLine) ? chunk.startLine : 0;
-  const endLine = Number.isFinite(chunk.endLine) ? chunk.endLine : startLine;
-  return `chunk:${filePath}:${chunk.name}:${startLine}-${endLine}`;
-}
-
-function generateChunkDescription(chunk) {
-  const parts = [chunk.kind];
-  if (chunk.exported) parts.push("exported");
-  if (chunk.async) parts.push("async");
-  parts.push(chunk.signature);
-
-  if (typeof chunk.description === "string" && chunk.description.trim().length > 10) {
-    parts.push(normalizeWhitespace(chunk.description).slice(0, 200));
-  }
-
-  // Extract leading JSDoc/comment from body
-  // Match leading JSDoc (/** */), block (/* */) and line (//) comments
-  const commentMatch = chunk.body.match(/^(?:\s*(?:\/\*[\s\S]*?\*\/|\/\/[^\n]*)[\s\n]*)+/);
-  if (commentMatch) {
-    const cleaned = commentMatch[0]
-      .replace(/\/\*\*|\*\/|\*|\/\//g, "")
-      .replace(/\s+/g, " ").trim()
-      .slice(0, 200);
-    if (cleaned.length > 10) parts.push(cleaned);
-  }
-
-  return parts.join(". ") + ".";
-}
-
-function generateModuleSummary(dir, files, exportNames, repoRoot = REPO_ROOT) {
-  // Check for README.md in directory
-  const readmePath = path.join(repoRoot, dir, "README.md");
-  if (fs.existsSync(readmePath)) {
-    try {
-      const content = fs.readFileSync(readmePath, "utf8");
-      // Skip first heading line, take first 300 chars
-      const lines = content.split(/\r?\n/);
-      const startIdx = lines.findIndex(l => !l.startsWith("#") && l.trim().length > 0);
-      if (startIdx >= 0) {
-        const excerpt = lines.slice(startIdx).join(" ").trim().slice(0, 300);
-        if (excerpt.length > 20) return excerpt;
-      }
-    } catch {
-      // fall through to auto-generated summary
-    }
-  }
-
-  const name = path.basename(dir);
-  const codeFiles = files.filter(f => f.kind === "CODE");
-  const docFiles = files.filter(f => f.kind !== "CODE");
-
-  const parts = [`Module ${name}`];
-  parts.push(`Contains ${files.length} files (${codeFiles.length} code, ${docFiles.length} docs)`);
-
-  // Detect common file extension pattern
-  const exts = new Set(codeFiles.map(f => path.extname(f.path).toLowerCase()));
-  if (exts.size === 1) {
-    const ext = [...exts][0];
-    const extNames = {
-      ".ts": "TypeScript",
-      ".tsx": "TypeScript React",
-      ".mts": "TypeScript ESM",
-      ".cts": "TypeScript CommonJS",
-      ".js": "JavaScript",
-      ".jsx": "JavaScript React",
-      ".mjs": "JavaScript ESM",
-      ".cjs": "JavaScript CommonJS"
-    };
-    if (extNames[ext]) parts.push(`${extNames[ext]} source files`);
-  }
-
-  if (exportNames.length > 0) {
-    parts.push(`Key exports: ${exportNames.slice(0, 5).join(", ")}`);
-  }
-
-  return parts.join(". ") + ".";
-}
-
-function generateModules(fileRecords, chunkRecords) {
-  const dirFiles = new Map();
-  const dirChunks = new Map();
-  const fileById = new Map(fileRecords.map(f => [f.id, f]));
-
-  for (const file of fileRecords) {
-    const dir = path.dirname(file.path);
-    if (!dirFiles.has(dir)) dirFiles.set(dir, []);
-    dirFiles.get(dir).push(file);
-  }
-
-  for (const chunk of chunkRecords) {
-    if (!chunk.exported || isWindowChunkId(chunk.id)) continue;
-    const file = fileById.get(chunk.file_id);
-    if (!file) continue;
-    const dir = path.dirname(file.path);
-    if (!dirChunks.has(dir)) dirChunks.set(dir, []);
-    dirChunks.get(dir).push(chunk);
-  }
-
-  const modules = [];
-  const containsRelations = [];
-  const containsModuleRelations = [];
-  const exportsRelations = [];
-
-  const MIN_MODULE_FILES = 2;
-
-  for (const [dir, files] of dirFiles) {
-    if (files.length < MIN_MODULE_FILES) continue;
-
-    const exports = dirChunks.get(dir) || [];
-    const exportNames = [...new Set(exports.slice(0, 20).map(c => c.name))];
-    const moduleId = `module:${dir}`;
-
-    modules.push({
-      id: moduleId,
-      path: dir,
-      name: path.basename(dir),
-      summary: generateModuleSummary(dir, files, exportNames),
-      file_count: files.length,
-      exported_symbols: exportNames.join(", "),
-      updated_at: files.reduce((latest, f) => f.updated_at > latest ? f.updated_at : latest, ""),
-      source_of_truth: false,
-      trust_level: 75,
-      status: "active"
-    });
-
-    // CONTAINS: Module -> File
-    for (const file of files) {
-      containsRelations.push({ from: moduleId, to: file.id });
-    }
-
-    // EXPORTS: Module -> Chunk
-    for (const chunk of exports) {
-      exportsRelations.push({ from: moduleId, to: chunk.id });
-    }
-  }
-
-  // CONTAINS_MODULE: parent Module -> child Module
-  const moduleDirs = new Set(modules.map(m => m.path));
-  for (const dir of moduleDirs) {
-    const parent = path.dirname(dir);
-    if (parent !== dir && moduleDirs.has(parent)) {
-      containsModuleRelations.push({
-        from: `module:${parent}`,
-        to: `module:${dir}`
-      });
-    }
-  }
-
-  return { modules, containsRelations, containsModuleRelations, exportsRelations };
-}
-
-function isWindowChunkId(chunkId) {
-  return typeof chunkId === "string" && chunkId.includes(":window:");
-}
-
-function splitChunkIntoWindows(chunkRecord, options) {
-  const { windowLines, overlapLines, splitMinLines, maxWindows, chunkBody } = options;
-  const sourceBody = typeof chunkBody === "string" ? chunkBody : chunkRecord.body;
-  const lines = sourceBody.split(/\r?\n/);
-  const totalLines = lines.length;
-  if (totalLines < splitMinLines || totalLines <= windowLines) {
-    return [];
-  }
-
-  const windows = [];
-  const safeOverlap = Math.max(0, Math.min(overlapLines, windowLines - 1));
-  let start = 0;
-  let windowIndex = 1;
-
-  while (start < totalLines && windows.length < maxWindows) {
-    const isLastAllowedWindow = windows.length + 1 >= maxWindows;
-    const end = isLastAllowedWindow ? totalLines : Math.min(totalLines, start + windowLines);
-    const windowStartLine = chunkRecord.start_line + start;
-    const windowEndLine = chunkRecord.start_line + Math.max(0, end - 1);
-    const windowBody = lines.slice(start, end).join("\n");
-    const persistedBody = isLastAllowedWindow ? windowBody : windowBody.slice(0, MAX_BODY_CHARS);
-    windows.push({
-      id: `${chunkRecord.id}:window:${windowIndex}:${windowStartLine}-${windowEndLine}`,
-      file_id: chunkRecord.file_id,
-      name: `${chunkRecord.name}#window${windowIndex}`,
-      kind: chunkRecord.kind,
-      signature: `${chunkRecord.signature} [window ${windowIndex}]`,
-      body: persistedBody,
-      description: chunkRecord.description || "",
-      start_line: windowStartLine,
-      end_line: windowEndLine,
-      language: chunkRecord.language,
-      exported: chunkRecord.exported || false,
-      checksum: checksum(Buffer.from(windowBody)),
-      updated_at: chunkRecord.updated_at,
-      trust_level: chunkRecord.trust_level,
-      status: chunkRecord.status,
-      source_of_truth: chunkRecord.source_of_truth
-    });
-
-    if (end >= totalLines) {
-      break;
-    }
-
-    start = end - safeOverlap;
-    windowIndex += 1;
-  }
-
-  return windows;
-}
-
-function resolveIngestWorkerCount(taskCount) {
-  const raw = process.env.CORTEX_INGEST_WORKERS;
-  const configured = raw !== undefined ? Number.parseInt(raw, 10) : Number.NaN;
-  const cpuBudget = Math.max(1, (os.availableParallelism?.() ?? os.cpus().length) - 1);
-  const defaultWorkerLimit = taskCount >= 1000 ? 4 : 8;
-  const desired = Number.isFinite(configured) && configured >= 0 ? configured : Math.min(cpuBudget, defaultWorkerLimit);
-  if (desired <= 1) return 1;
-  // Worker spin-up plus per-worker WASM grammar init dominates on small or
-  // incremental runs; stay sequential until there is enough work to amortize.
-  if (taskCount < 50) return 1;
-  return Math.min(desired, taskCount);
-}
-
-function createEmptyWorkerParseStream(tasks, workerCount) {
-  const stats = () => ({
-    worker_tasks: tasks.length,
-    worker_count: Number.isFinite(workerCount) ? workerCount : 0,
-    worker_tasks_assigned: 0,
-    worker_tasks_settled: 0,
-    worker_tasks_unsettled_fallback: tasks.length,
-    worker_results: 0,
-    worker_results_consumed: 0,
-    worker_results_retained: 0,
-    worker_results_retained_peak: 0,
-    worker_results_pending: 0,
-    worker_results_missing: tasks.length,
-    worker_waiters: 0
-  });
-  return {
-    hasTask: () => false,
-    stats,
-    take: async () => undefined,
-    drain: async () => stats()
-  };
-}
-
-function startWorkerParseStream(tasks, { workerCount, verbose, workerUrl } = {}) {
-  if (tasks.length === 0) {
-    return createEmptyWorkerParseStream(tasks, workerCount);
-  }
-
-  const resolvedWorkerUrl = workerUrl ?? new URL("./ingest-worker.mjs", import.meta.url);
-  const poolSize = Math.min(workerCount, tasks.length);
-  // Defensive: an undefined/0/negative/NaN workerCount yields poolSize < 1, in
-  // which case no workers are ever spawned and the pool would never resolve.
-  // Return empty so the caller parses everything inline. (Math.min(undefined, n)
-  // is NaN, which is why this is `!(>= 1)` rather than `< 1`.)
-  if (!(poolSize >= 1)) {
-    return createEmptyWorkerParseStream(tasks, workerCount);
-  }
-
-  const taskIds = new Set(tasks.map((task) => task.id));
-  const results = new Map();
-  const missingResults = new Set();
-  const waiters = new Map();
-  const workers = [];
-  const inflight = new Map(); // worker -> taskId being parsed, or null when idle
-  let nextTask = 0;
-  let alive = poolSize;
-  let finished = false;
-  let resolveDone;
-  const done = new Promise((resolve) => {
-    resolveDone = resolve;
-  });
-  const state = {
-    assigned: 0,
-    settled: 0,
-    successful: 0,
-    consumed: 0,
-    retainedPeak: 0
-  };
-
-  const stats = () => ({
-    worker_tasks: tasks.length,
-    worker_count: poolSize,
-    worker_tasks_assigned: state.assigned,
-    worker_tasks_settled: state.settled,
-    worker_tasks_unsettled_fallback: finished ? Math.max(0, tasks.length - state.settled) : 0,
-    worker_results: state.successful,
-    worker_results_consumed: state.consumed,
-    worker_results_retained: results.size,
-    worker_results_retained_peak: state.retainedPeak,
-    worker_results_pending: finished ? 0 : Math.max(0, tasks.length - state.settled),
-    worker_results_missing: tasks.length - state.successful,
-    worker_waiters: waiters.size
-  });
-
-  const finish = () => {
-    if (finished) return;
-    finished = true;
-    for (const resolve of waiters.values()) {
-      resolve(undefined);
-    }
-    waiters.clear();
-    resolveDone();
-  };
-
-  // A task is "settled" once it has a result, was skipped, or its worker
-  // died holding it. Finish when every task is settled, or when no worker is
-  // left alive to make progress (any still-queued tasks then parse inline).
-  const maybeFinish = () => {
-    if (state.settled >= tasks.length || alive <= 0) {
-      finish();
-    }
-  };
-
-  const resolveWaiter = (taskId, result) => {
-    const resolve = waiters.get(taskId);
-    if (!resolve) {
-      return false;
-    }
-    waiters.delete(taskId);
-    if (result !== undefined) {
-      state.consumed += 1;
-    }
-    resolve(result);
-    return true;
-  };
-
-  const settleTask = (taskId, result) => {
-    state.settled += 1;
-    if (result !== undefined) {
-      state.successful += 1;
-      if (!resolveWaiter(taskId, result)) {
-        results.set(taskId, result);
-        state.retainedPeak = Math.max(state.retainedPeak, results.size);
-      }
-    } else {
-      missingResults.add(taskId);
-      resolveWaiter(taskId, undefined);
-    }
-    maybeFinish();
-  };
-
-  const assign = (worker) => {
-    if (nextTask >= tasks.length) {
-      inflight.set(worker, null);
-      worker.postMessage({ type: "shutdown" });
-      return;
-    }
-    const task = tasks[nextTask++];
-    state.assigned += 1;
-    inflight.set(worker, task.id);
-    worker.postMessage({
-      taskId: task.id,
-      ext: task.ext,
-      content: task.content,
-      absolutePath: task.absolutePath,
-      contentLimit: task.contentLimit,
-      filePath: task.path
-    });
-  };
-
-  const onMessage = (worker, message) => {
-    if (finished) return;
-    inflight.set(worker, null);
-    if (message.ok) {
-      settleTask(message.taskId, message.result);
-    } else {
-      if (verbose) {
-        console.log(`[ingest] worker skipped ${message.taskId}: ${message.reason}`);
-      }
-      settleTask(message.taskId, undefined);
-    }
-    if (!finished) {
-      assign(worker);
-    }
-  };
-
-  const onExit = (worker) => {
-    if (finished) return;
-    alive -= 1;
-    const taskId = inflight.get(worker);
-    if (taskId != null) {
-      // Worker exited mid-parse without posting a result (OOM, native abort,
-      // process.exit) and without an 'error' event. Count its in-flight task
-      // as settled so it falls back to inline parsing rather than leaving the
-      // pool waiting on a dead worker forever.
-      if (verbose) {
-        console.log(`[ingest] worker exited mid-task ${taskId}; will parse inline`);
-      }
-      inflight.set(worker, null);
-      settleTask(taskId, undefined);
-      return;
-    }
-    maybeFinish();
-  };
-
-  for (let i = 0; i < poolSize; i += 1) {
-    const worker = new Worker(resolvedWorkerUrl);
-    workers.push(worker);
-    worker.on("message", (message) => onMessage(worker, message));
-    worker.on("error", (error) => {
-      // Uncaught exception in the worker. The 'exit' event that always
-      // follows does the task accounting (idempotent via inflight), so we
-      // only log here to avoid double-counting.
-      if (verbose) {
-        console.log(`[ingest] worker error: ${error.message}`);
-      }
-    });
-    worker.on("exit", () => onExit(worker));
-  }
-
-  for (const worker of workers) {
-    assign(worker);
-  }
-
-  return {
-    hasTask(taskId) {
-      return taskIds.has(taskId);
-    },
-    stats,
-    async take(taskId) {
-      if (!taskIds.has(taskId)) {
-        return undefined;
-      }
-      if (results.has(taskId)) {
-        const result = results.get(taskId);
-        results.delete(taskId);
-        state.consumed += 1;
-        return result;
-      }
-      if (missingResults.has(taskId) || finished) {
-        return undefined;
-      }
-      return new Promise((resolve) => {
-        waiters.set(taskId, resolve);
-      });
-    },
-    async drain() {
-      await done;
-      await Promise.all(workers.map((worker) => worker.terminate().catch(() => {})));
-      return stats();
-    }
-  };
-}
-
-// Parse files in a worker pool, returning Map<fileId, parseResult> for the
-// tasks that completed. Any task not present (worker miss, skip, or a fatal
-// worker error) is left to the caller's inline parse — the same parse
-// function on the same content, so output is identical either way. Never
-// rejects: a fatal worker error resolves with the partial results collected
-// so far.
-async function parseFilesInWorkers(tasks, options = {}) {
-  const stream = startWorkerParseStream(tasks, options);
-  const results = new Map();
-  for (const task of tasks) {
-    const result = await stream.take(task.id);
-    if (result) {
-      results.set(task.id, result);
-    }
-  }
-
-  await stream.drain();
-  return results;
-}
-
-async function main() {
-  await loadParsers();
-  const { mode, verbose } = parseArgs(process.argv);
-  const memoryTrace = createIngestMemoryTrace();
-  const configPath = path.join(CONTEXT_DIR, "config.yaml");
-  const rulesPath = path.join(CONTEXT_DIR, "rules.yaml");
-
-  if (!fs.existsSync(configPath)) {
-    throw new Error(`Missing config: ${configPath}`);
-  }
-  if (!fs.existsSync(rulesPath)) {
-    throw new Error(`Missing rules: ${rulesPath}`);
-  }
-
-  ensureDirectory(CACHE_DIR);
-  ensureDirectory(DB_IMPORT_DIR);
-
-  const configText = fs.readFileSync(configPath, "utf8");
-  const sourcePaths = parseSourcePaths(configText);
-  if (sourcePaths.length === 0) {
-    throw new Error("No source_paths found in .context/config.yaml");
-  }
-
-  const rules = parseRules(fs.readFileSync(rulesPath, "utf8"));
-  memoryTrace.checkpoint("scan:start", {
-    mode,
-    source_paths: sourcePaths.length,
-    rules: rules.length
-  });
-  const { candidates, incrementalMode, deletedRelPaths } = collectCandidateFiles(sourcePaths, mode);
-  const chunkWindowLines = parsePositiveIntegerEnv(
-    "CORTEX_CHUNK_WINDOW_LINES",
-    DEFAULT_CHUNK_WINDOW_LINES
-  );
-  const chunkOverlapLines = Math.max(
-    0,
-    Math.min(
-      chunkWindowLines - 1,
-      parseNonNegativeIntegerEnv("CORTEX_CHUNK_OVERLAP_LINES", DEFAULT_CHUNK_OVERLAP_LINES)
-    )
-  );
-  const chunkSplitMinLines = Math.max(
-    chunkWindowLines + 1,
-    parsePositiveIntegerEnv("CORTEX_CHUNK_SPLIT_MIN_LINES", DEFAULT_CHUNK_SPLIT_MIN_LINES)
-  );
-  const chunkMaxWindows = parsePositiveIntegerEnv(
-    "CORTEX_CHUNK_MAX_WINDOWS",
-    DEFAULT_CHUNK_MAX_WINDOWS
-  );
-
-  const fileRecordMap = new Map();
-  const adrRecordMap = new Map();
-  const skipped = {
-    unsupported: 0,
-    tooLarge: 0,
-    binary: 0
-  };
-
-  if (incrementalMode) {
-    const existingFiles = readJsonlSafe(path.join(CACHE_DIR, "entities.file.jsonl"));
-    for (const record of existingFiles) {
-      if (!record || typeof record !== "object") continue;
-      const filePath = toPosixPath(String(record.path ?? ""));
-      if (!filePath || !hasSourcePrefix(filePath, sourcePaths)) {
-        continue;
-      }
-      const absolutePath = path.resolve(REPO_ROOT, filePath);
-      if (!fs.existsSync(absolutePath)) {
-        continue;
-      }
-      fileRecordMap.set(String(record.id ?? `file:${filePath}`), {
-        ...record,
-        id: String(record.id ?? `file:${filePath}`),
-        path: filePath,
-        kind: String(record.kind ?? detectKind(filePath)),
-        content: String(record.content ?? "")
-      });
-    }
-
-    const existingAdrs = readJsonlSafe(path.join(CACHE_DIR, "entities.adr.jsonl"));
-    for (const adr of existingAdrs) {
-      if (!adr || typeof adr !== "object") continue;
-      const adrPath = toPosixPath(String(adr.path ?? ""));
-      if (!adrPath || !hasSourcePrefix(adrPath, sourcePaths)) {
-        continue;
-      }
-      if (!fs.existsSync(path.resolve(REPO_ROOT, adrPath))) {
-        continue;
-      }
-      adrRecordMap.set(String(adr.id ?? ""), {
-        ...adr,
-        id: String(adr.id ?? ""),
-        path: adrPath
-      });
-    }
-  }
-
-  for (const relPath of deletedRelPaths) {
-    fileRecordMap.delete(`file:${relPath}`);
-    const relPrefix = relPath.endsWith("/") ? relPath : `${relPath}/`;
-    for (const [fileId, fileRecord] of fileRecordMap.entries()) {
-      if (String(fileRecord.path ?? "").startsWith(relPrefix)) {
-        fileRecordMap.delete(fileId);
-      }
-    }
-
-    for (const [adrId, adrRecord] of adrRecordMap.entries()) {
-      if (adrRecord.path === relPath || String(adrRecord.path ?? "").startsWith(relPrefix)) {
-        adrRecordMap.delete(adrId);
-      }
-    }
-  }
-
-  for (const absolutePath of [...candidates].sort()) {
-    const relPath = toPosixPath(path.relative(REPO_ROOT, absolutePath));
-    if (!isTextFile(relPath)) {
-      skipped.unsupported += 1;
-      if (verbose) console.log(`[ingest] skip unsupported: ${relPath}`);
-      continue;
-    }
-
-    const stats = fs.statSync(absolutePath);
-    if (stats.size > MAX_FILE_BYTES) {
-      skipped.tooLarge += 1;
-      if (verbose) console.log(`[ingest] skip large: ${relPath}`);
-      continue;
-    }
-
-    const buffer = fs.readFileSync(absolutePath);
-    if (isBinaryBuffer(buffer)) {
-      skipped.binary += 1;
-      if (verbose) console.log(`[ingest] skip binary: ${relPath}`);
-      continue;
-    }
-
-    const content = buffer.toString("utf8");
-    const kind = detectKind(relPath);
-    const id = `file:${relPath}`;
-    const updatedAt = stats.mtime.toISOString();
-    const sourceOfTruth = kind === "ADR";
-    const trustLevel = trustLevelForKind(kind);
-
-    const fileRecord = {
-      id,
-      path: relPath,
-      kind,
-      checksum: checksum(buffer),
-      updated_at: updatedAt,
-      source_of_truth: sourceOfTruth,
-      trust_level: trustLevel,
-      status: "active",
-      size_bytes: stats.size,
-      excerpt: normalizeWhitespace(content).slice(0, 500),
-      content: content.slice(0, MAX_CONTENT_CHARS)
-    };
-    fileRecordMap.set(fileRecord.id, fileRecord);
-
-    if (kind === "ADR") {
-      const title = extractTitle(content, path.basename(relPath, path.extname(relPath)));
-      const adrRecord = {
-        id: `adr:${path.basename(relPath, path.extname(relPath)).toLowerCase()}`,
-        path: relPath,
-        title,
-        body: content.slice(0, MAX_BODY_CHARS),
-        decision_date: parseDecisionDate(content, updatedAt),
-        supersedes_id: "",
-        source_of_truth: true,
-        trust_level: 95,
-        status: "active"
-      };
-      adrRecordMap.set(adrRecord.id, adrRecord);
-    } else {
-      for (const [adrId, adrRecord] of adrRecordMap.entries()) {
-        if (adrRecord.path === relPath) {
-          adrRecordMap.delete(adrId);
-        }
-      }
-    }
-  }
-
-  const fileRecords = [...fileRecordMap.values()].sort((a, b) => a.path.localeCompare(b.path));
-  const adrRecords = [...adrRecordMap.values()].sort((a, b) => a.path.localeCompare(b.path));
-  memoryTrace.checkpoint("scan:file_records", {
-    candidates: candidates.size,
-    incremental_mode: incrementalMode,
-    deleted_paths: deletedRelPaths.length,
-    files: fileRecords.length,
-    adrs: adrRecords.length,
-    skipped_unsupported: skipped.unsupported,
-    skipped_too_large: skipped.tooLarge,
-    skipped_binary: skipped.binary
-  });
-  const csharpFileCount = fileRecords.filter((record) => path.extname(record.path).toLowerCase() === ".cs").length;
-  const csharpRuntime = csharpFileCount > 0 ? getCSharpParserRuntime() : null;
-  const indexedFileIds = new Set(fileRecords.map((record) => record.id));
-  const changedFileIds = new Set(
-    [...candidates].map((absolutePath) => `file:${toPosixPath(path.relative(REPO_ROOT, absolutePath))}`)
-  );
-
-  const {
-    chunkRecordMap,
-    definesRelationMap,
-    callsRelationMap,
-    importsRelationMap,
-    callsSqlRelationMap
-  } = incrementalMode
-    ? hydrateIncrementalChunkState(fileRecords)
-    : {
-        chunkRecordMap: new Map(),
-        definesRelationMap: new Map(),
-        callsRelationMap: new Map(),
-        importsRelationMap: new Map(),
-        callsSqlRelationMap: new Map()
-      };
-  memoryTrace.checkpoint("hydration:complete", {
-    incremental_mode: incrementalMode,
-    cached_chunks: chunkRecordMap.size,
-    cached_defines_relations: definesRelationMap.size,
-    cached_calls_relations: callsRelationMap.size,
-    cached_imports_relations: importsRelationMap.size,
-    cached_calls_sql_relations: callsSqlRelationMap.size
-  });
-
-  const cachedChunkFileIds = new Set(
-    [...chunkRecordMap.values()].map((record) => String(record.file_id ?? "")).filter(Boolean)
-  );
-  const cachedSqlReferenceFileIds = new Set(
-    [...callsSqlRelationMap.values()].map((record) => String(record.from ?? "")).filter(Boolean)
-  );
-  const usesConfigKeyRelationMap = new Map();
-  const usesResourceKeyRelationMap = new Map();
-  const usesSettingKeyRelationMap = new Map();
-
-  // Extract chunks from changed or uncached code files
-  let windowedChunkCount = 0;
-  let {
-    sqlChunkIdsByAlias,
-    configChunkIdsByAlias,
-    resourceChunkIdsByAlias,
-    settingChunkIdsByAlias
-  } = buildChunkAliasIndexes([...chunkRecordMap.values()]);
-  const deferredSqlCallEdges = [];
-
-  // C# project-wide batch parse: when Roslyn is available and batching
-  // isn't disabled, compile all .cs files together via CSharpCompilation
-  // to enable SemanticModel-resolved calls (e.g. "System.IO.File.ReadAllText"
-  // instead of bare "ReadAllText"). Falls back silently to per-file parse
-  // if batch isn't usable.
-  const csharpBatchCache = new Map();
-  if (
-    hasCSharpProjectParser() &&
-    isCSharpParserAvailable() &&
-    process.env.CORTEX_CSHARP_BATCH !== "never"
-  ) {
-    const csharpFilesForBatch = fileRecords.filter((r) => {
-      if (r.kind !== "CODE") return false;
-      if (path.extname(r.path).toLowerCase() !== ".cs") return false;
-      return !incrementalMode || changedFileIds.has(r.id) || !cachedChunkFileIds.has(r.id);
-    });
-    if (csharpFilesForBatch.length > 0) {
-      const allCsharpInputs = fileRecords
-        .filter((r) => r.kind === "CODE" && path.extname(r.path).toLowerCase() === ".cs")
-        .map((r) => ({ path: r.path, content: r.content }));
-      try {
-        const batchResult = parseCSharpProject(allCsharpInputs);
-        for (const [filePath, result] of batchResult) {
-          csharpBatchCache.set(filePath, result);
-        }
-      } catch (error) {
-        if (verbose) {
-          console.log(`[ingest] C# batch parse failed, falling back per-file: ${error.message}`);
-        }
-      }
-    }
-  }
-
-  // Determine which files need parsing (single pass over the gates, shared by
-  // the worker dispatch and the merge loop below so the two cannot diverge).
-  const parseEligible = new Map();
-  for (const fileRecord of fileRecords) {
-    const ext = path.extname(fileRecord.path).toLowerCase();
-    const parser = getChunkParserForExtension(ext);
-    const isStructuredNonCodeChunk = STRUCTURED_NON_CODE_CHUNK_EXTENSIONS.has(ext);
-    if (fileRecord.kind !== "CODE" && !isStructuredNonCodeChunk) continue;
-    if (!parser) continue;
-    if (typeof parser.isAvailable === "function" && !(await parser.isAvailable())) continue;
-
-    const shouldParseFile =
-      !incrementalMode || changedFileIds.has(fileRecord.id) || !cachedChunkFileIds.has(fileRecord.id);
-    if (!shouldParseFile) {
-      continue;
-    }
-    parseEligible.set(fileRecord.id, { parser, ext });
-  }
-  memoryTrace.checkpoint("parse:eligible", {
-    files: fileRecords.length,
-    parse_eligible: parseEligible.size,
-    csharp_batch_cached: csharpBatchCache.size
-  });
-
-  // Parse parallel-safe files (tree-sitter/JS, no subprocess, no cross-file
-  // state) in a worker pool. C# batch-cached files and any worker miss fall
-  // through to inline parsing in the loop, so the result is byte-identical to
-  // the sequential path regardless of where a file actually parsed.
-  const workerTasks = fileRecords
-    .filter((fileRecord) => {
-      const eligible = parseEligible.get(fileRecord.id);
-      if (!eligible) return false;
-      if (!PARALLEL_SAFE_LANGUAGES.has(eligible.parser.language)) return false;
-      if (eligible.parser.language === "csharp" && csharpBatchCache.has(fileRecord.path)) return false;
-      return true;
-    })
-    .map((fileRecord) => ({
-      id: fileRecord.id,
-      ext: parseEligible.get(fileRecord.id).ext,
-      absolutePath: path.resolve(REPO_ROOT, fileRecord.path),
-      contentLimit: MAX_CONTENT_CHARS,
-      path: fileRecord.path
-    }));
-  const workerCount = resolveIngestWorkerCount(workerTasks.length);
-  memoryTrace.checkpoint("parse:workers_start", {
-    worker_tasks: workerTasks.length,
-    worker_count: workerCount
-  });
-  const workerStream =
-    workerCount > 1 ? startWorkerParseStream(workerTasks, { workerCount, verbose }) : null;
-  if (!workerStream) {
-    memoryTrace.checkpoint("parse:workers_complete", {
-      worker_tasks: workerTasks.length,
-      worker_count: workerCount,
-      worker_results: 0,
-      worker_results_consumed: 0,
-      worker_results_retained: 0,
-      worker_results_retained_peak: 0,
-      worker_results_pending: 0,
-      worker_results_missing: workerTasks.length
-    });
-  }
-
-  for (const fileRecord of fileRecords) {
-    const eligible = parseEligible.get(fileRecord.id);
-    if (!eligible) continue;
-    const { parser } = eligible;
-
-    removeChunkStateForFile(
-      fileRecord.id,
-      chunkRecordMap,
-      definesRelationMap,
-      callsRelationMap,
-      importsRelationMap,
-      callsSqlRelationMap
-    );
-
-    try {
-      let parseResult;
-      if (parser.language === "csharp" && csharpBatchCache.has(fileRecord.path)) {
-        parseResult = csharpBatchCache.get(fileRecord.path);
-      } else if (workerStream?.hasTask(fileRecord.id)) {
-        parseResult = await workerStream.take(fileRecord.id);
-        if (!parseResult) {
-          parseResult = await parser.parse(fileRecord.content, fileRecord.path, parser.language);
-        }
-      } else {
-        parseResult = await parser.parse(fileRecord.content, fileRecord.path, parser.language);
-      }
-
-      if (parseResult.errors.length > 0 && verbose) {
-        console.log(`[ingest] parse errors in ${fileRecord.path}:`, parseResult.errors[0].message);
-      }
-
-      const parsedChunks = [];
-      const chunkIdsByName = new Map();
-
-      for (const chunk of parseResult.chunks) {
-        const chunkId = chunkIdFor(fileRecord.path, chunk);
-        parsedChunks.push({ chunk, chunkId });
-        if (!chunkIdsByName.has(chunk.name)) {
-          chunkIdsByName.set(chunk.name, []);
-        }
-        chunkIdsByName.get(chunk.name).push(chunkId);
-        if (parser.language === "sql") {
-          for (const alias of sqlChunkAliases(chunk.name)) {
-            if (!sqlChunkIdsByAlias.has(alias)) {
-              sqlChunkIdsByAlias.set(alias, []);
-            }
-            sqlChunkIdsByAlias.get(alias).push(chunkId);
-          }
-          deferredSqlCallEdges.push({
-            chunkId,
-            calls: Array.isArray(chunk.calls) ? chunk.calls : []
-          });
-        } else if (parser.language === "config") {
-          for (const alias of configChunkAliases(chunk)) {
-            if (!configChunkIdsByAlias.has(alias)) {
-              configChunkIdsByAlias.set(alias, []);
-            }
-            configChunkIdsByAlias.get(alias).push(chunkId);
-          }
-          deferredSqlCallEdges.push({
-            chunkId,
-            calls: Array.isArray(chunk.calls) ? chunk.calls : []
-          });
-        } else if (parser.language === "resource") {
-          for (const alias of namedEntryChunkAliases(chunk)) {
-            if (!resourceChunkIdsByAlias.has(alias)) {
-              resourceChunkIdsByAlias.set(alias, []);
-            }
-            resourceChunkIdsByAlias.get(alias).push(chunkId);
-          }
-          deferredSqlCallEdges.push({
-            chunkId,
-            calls: Array.isArray(chunk.calls) ? chunk.calls : []
-          });
-        } else if (parser.language === "settings") {
-          for (const alias of namedEntryChunkAliases(chunk)) {
-            if (!settingChunkIdsByAlias.has(alias)) {
-              settingChunkIdsByAlias.set(alias, []);
-            }
-            settingChunkIdsByAlias.get(alias).push(chunkId);
-          }
-          deferredSqlCallEdges.push({
-            chunkId,
-            calls: Array.isArray(chunk.calls) ? chunk.calls : []
-          });
-        }
-
-        const chunkRecord = {
-          id: chunkId,
-          file_id: fileRecord.id,
-          name: chunk.name,
-          kind: chunk.kind,
-          signature: chunk.signature,
-          body: chunk.body.slice(0, MAX_BODY_CHARS), // Limit chunk body size
-          description: generateChunkDescription(chunk),
-          start_line: chunk.startLine,
-          end_line: chunk.endLine,
-          language: chunk.language,
-          exported: Boolean(chunk.exported),
-          checksum: checksum(Buffer.from(chunk.body)),
-          updated_at: fileRecord.updated_at,
-          trust_level: fileRecord.trust_level,
-          status:
-            typeof fileRecord.status === "string" && fileRecord.status.trim().length > 0
-              ? fileRecord.status
-              : "active",
-          source_of_truth: Boolean(fileRecord.source_of_truth)
-        };
-        chunkRecordMap.set(chunkId, chunkRecord);
-
-        // DEFINES relation: File -> Chunk
-        definesRelationMap.set(relationKey(fileRecord.id, chunkId), {
-          from: fileRecord.id,
-          to: chunkId
-        });
-
-        const windows = splitChunkIntoWindows(chunkRecord, {
-          windowLines: chunkWindowLines,
-          overlapLines: chunkOverlapLines,
-          splitMinLines: chunkSplitMinLines,
-          maxWindows: chunkMaxWindows,
-          chunkBody: chunk.body
-        });
-        if (windows.length > 0) {
-          windowedChunkCount += windows.length;
-          for (const windowChunk of windows) {
-            chunkRecordMap.set(windowChunk.id, windowChunk);
-            definesRelationMap.set(relationKey(fileRecord.id, windowChunk.id), {
-              from: fileRecord.id,
-              to: windowChunk.id
-            });
-          }
-        }
-
-        // IMPORTS relations: Chunk -> File
-        for (const importPath of chunk.imports || []) {
-          const targetFileId = resolveRelativeImportTargetId(fileRecord.path, importPath, indexedFileIds);
-          if (!targetFileId) {
-            continue;
-          }
-
-          importsRelationMap.set(relationKey(chunkId, targetFileId, importPath), {
-            from: chunkId,
-            to: targetFileId,
-            import_name: importPath
-          });
-        }
-      }
-
-      const seenCallEdges = new Set();
-      for (const { chunk, chunkId } of parsedChunks) {
-        // CALLS relations: Chunk -> Chunk (within same file)
-        for (const calledName of chunk.calls || []) {
-          const targetChunkIds = chunkIdsByName.get(calledName) || [];
-          for (const targetChunkId of targetChunkIds) {
-            const callKey = `${chunkId}|${targetChunkId}|direct`;
-            if (seenCallEdges.has(callKey)) {
-              continue;
-            }
-            seenCallEdges.add(callKey);
-            callsRelationMap.set(relationKey(chunkId, targetChunkId, "direct"), {
-              from: chunkId,
-              to: targetChunkId,
-              call_type: "direct"
-            });
-          }
-        }
-      }
-    } catch (error) {
-      if (verbose) {
-        console.log(`[ingest] failed to parse ${fileRecord.path}: ${error instanceof Error ? error.message : String(error)}`);
-      }
-    }
-  }
-  const finalWorkerStats = workerStream ? await workerStream.drain() : null;
-  if (finalWorkerStats) {
-    memoryTrace.checkpoint("parse:workers_complete", finalWorkerStats);
-    if (verbose) {
-      console.log(
-        `[ingest] parsed ${finalWorkerStats.worker_results}/${workerTasks.length} files across ${workerCount} workers`
-      );
-    }
-  }
-  memoryTrace.checkpoint("parse:merge_complete", {
-    chunk_map: chunkRecordMap.size,
-    defines_relations: definesRelationMap.size,
-    calls_relations: callsRelationMap.size,
-    imports_relations: importsRelationMap.size,
-    calls_sql_relations: callsSqlRelationMap.size,
-    deferred_sql_edges: deferredSqlCallEdges.length,
-    windowed_chunks: windowedChunkCount,
-    worker_results_retained: finalWorkerStats?.worker_results_retained ?? 0,
-    worker_results_retained_peak: finalWorkerStats?.worker_results_retained_peak ?? 0,
-    worker_results_pending: finalWorkerStats?.worker_results_pending ?? 0
-  });
-
-  const chunkRecords = [...chunkRecordMap.values()].sort((a, b) => String(a.id).localeCompare(String(b.id)));
-  ({
-    sqlChunkIdsByAlias,
-    configChunkIdsByAlias,
-    resourceChunkIdsByAlias,
-    settingChunkIdsByAlias
-  } = buildChunkAliasIndexes(chunkRecords));
-
-  // Filter CALLS relations to only valid targets (chunks that actually exist)
-  const chunkIdSet = new Set(chunkRecords.map(c => c.id));
-  const validDefinesRelations = [...definesRelationMap.values()].filter(
-    (rel) => indexedFileIds.has(rel.from) && chunkIdSet.has(rel.to)
-  );
-  const totalCallsRelations = callsRelationMap.size;
-  for (const edge of deferredSqlCallEdges) {
-    for (const calledName of edge.calls) {
-      for (const alias of sqlChunkAliases(calledName)) {
-        const targetChunkIds = sqlChunkIdsByAlias.get(alias) || [];
-        for (const targetChunkId of targetChunkIds) {
-          if (targetChunkId === edge.chunkId) {
-            continue;
-          }
-          callsRelationMap.set(relationKey(edge.chunkId, targetChunkId, "sql_reference"), {
-            from: edge.chunkId,
-            to: targetChunkId,
-            call_type: "sql_reference"
-          });
-        }
-      }
-    }
-  }
-  const validCallsRelations = [...callsRelationMap.values()].filter(
-    (rel) => chunkIdSet.has(rel.from) && chunkIdSet.has(rel.to)
-  );
-  const validImportsRelations = [...importsRelationMap.values()].filter(
-    (rel) => chunkIdSet.has(rel.from) && indexedFileIds.has(rel.to)
-  );
-  const sqlDefinitionsChanged =
-    incrementalMode &&
-    fileRecords.some(
-      (fileRecord) =>
-        changedFileIds.has(fileRecord.id) && path.extname(fileRecord.path).toLowerCase() === ".sql"
-    );
-  const sqlResourceReferenceMap = buildSqlResourceReferenceMap(fileRecords);
-  for (const fileRecord of fileRecords) {
-    if (!shouldExtractSqlReferences(fileRecord.path)) {
-      continue;
-    }
-
-    const shouldAnalyzeFile =
-      !incrementalMode ||
-      sqlDefinitionsChanged ||
-      changedFileIds.has(fileRecord.id) ||
-      !cachedSqlReferenceFileIds.has(fileRecord.id);
-    if (!shouldAnalyzeFile) {
-      continue;
-    }
-
-    for (const [key, relation] of callsSqlRelationMap.entries()) {
-      if (relation.from === fileRecord.id) {
-        callsSqlRelationMap.delete(key);
-      }
-    }
-
-    for (const refName of extractSqlObjectReferencesFromContent(
-      fileRecord.content,
-      fileRecord.path,
-      sqlResourceReferenceMap
-    )) {
-      for (const alias of sqlChunkAliases(refName)) {
-        const targetChunkIds = sqlChunkIdsByAlias.get(alias) || [];
-        for (const targetChunkId of targetChunkIds) {
-          callsSqlRelationMap.set(relationKey(fileRecord.id, targetChunkId, refName), {
-            from: fileRecord.id,
-            to: targetChunkId,
-            note: refName
-          });
-        }
-      }
-    }
-  }
-  const validCallsSqlRelations = [...callsSqlRelationMap.values()].filter(
-    (rel) => indexedFileIds.has(rel.from) && chunkIdSet.has(rel.to)
-  );
-  for (const fileRecord of fileRecords) {
-    if (!shouldExtractNamedResourceReferences(fileRecord.path)) {
-      continue;
-    }
-
-    for (const key of extractSqlResourceKeyReferences(fileRecord.content)) {
-      for (const targetChunkId of resourceChunkIdsByAlias.get(key) ?? []) {
-        usesResourceKeyRelationMap.set(relationKey(fileRecord.id, targetChunkId, key), {
-          from: fileRecord.id,
-          to: targetChunkId,
-          note: key
-        });
-      }
-      for (const targetChunkId of settingChunkIdsByAlias.get(key) ?? []) {
-        usesSettingKeyRelationMap.set(relationKey(fileRecord.id, targetChunkId, key), {
-          from: fileRecord.id,
-          to: targetChunkId,
-          note: key
-        });
-      }
-    }
-
-    for (const key of extractConfigKeyReferences(fileRecord.content)) {
-      for (const targetChunkId of configChunkIdsByAlias.get(key) ?? []) {
-        usesConfigKeyRelationMap.set(relationKey(fileRecord.id, targetChunkId, key), {
-          from: fileRecord.id,
-          to: targetChunkId,
-          note: key
-        });
-      }
-    }
-  }
-  for (const relation of generateConfigTransformKeyRelations(fileRecords, chunkRecords)) {
-    usesConfigKeyRelationMap.set(relationKey(relation.from, relation.to, relation.note), relation);
-  }
-  const validUsesConfigKeyRelations = [...usesConfigKeyRelationMap.values()].filter(
-    (rel) => indexedFileIds.has(rel.from) && chunkIdSet.has(rel.to)
-  );
-  const validUsesResourceKeyRelations = [...usesResourceKeyRelationMap.values()].filter(
-    (rel) => indexedFileIds.has(rel.from) && chunkIdSet.has(rel.to)
-  );
-  const validUsesSettingKeyRelations = [...usesSettingKeyRelationMap.values()].filter(
-    (rel) => indexedFileIds.has(rel.from) && chunkIdSet.has(rel.to)
-  );
-  memoryTrace.checkpoint("materialize:chunks_relations", {
-    chunks: chunkRecords.length,
-    chunk_ids: chunkIdSet.size,
-    relations_defines: validDefinesRelations.length,
-    relations_calls: validCallsRelations.length,
-    relations_imports: validImportsRelations.length,
-    relations_calls_sql: validCallsSqlRelations.length,
-    relations_uses_config_key: validUsesConfigKeyRelations.length,
-    relations_uses_resource_key: validUsesResourceKeyRelations.length,
-    relations_uses_setting_key: validUsesSettingKeyRelations.length
-  });
-
-  if (verbose && chunkRecords.length > 0) {
-    console.log(`[ingest] extracted ${chunkRecords.length} chunks from ${fileRecords.filter(f => f.kind === "CODE").length} code files`);
-    if (windowedChunkCount > 0) {
-      console.log(
-        `[ingest] overlap windows added=${windowedChunkCount} (window_lines=${chunkWindowLines}, overlap_lines=${chunkOverlapLines}, max_windows=${chunkMaxWindows})`
-      );
-    }
-    console.log(`[ingest] ${validCallsRelations.length} call relations (${totalCallsRelations - validCallsRelations.length} filtered)`);
-    if (validCallsSqlRelations.length > 0) {
-      console.log(`[ingest] sql call links=${validCallsSqlRelations.length}`);
-    }
-    if (validUsesConfigKeyRelations.length > 0) {
-      console.log(`[ingest] uses_config_key=${validUsesConfigKeyRelations.length}`);
-    }
-    if (validUsesResourceKeyRelations.length > 0 || validUsesSettingKeyRelations.length > 0) {
-      console.log(
-        `[ingest] uses_resource_key=${validUsesResourceKeyRelations.length} uses_setting_key=${validUsesSettingKeyRelations.length}`
-      );
-    }
-  }
-
-  const csharpChunkCount = chunkRecords.filter((record) => record.language === "csharp").length;
-  const parserHealth = {};
-  if (csharpFileCount > 0) {
-    parserHealth.csharp = {
-      files: csharpFileCount,
-      available: Boolean(csharpRuntime?.available),
-      reason: csharpRuntime?.available ? null : (csharpRuntime?.reason ?? "C# parser unavailable"),
-      chunks: csharpChunkCount,
-    };
-
-    if (!csharpRuntime?.available) {
-      console.log(`[ingest] warning csharp parser unavailable: ${parserHealth.csharp.reason}`);
-    } else if (csharpChunkCount === 0) {
-      console.log("[ingest] warning csharp parser produced 0 chunks across C# files");
-    }
-  }
-
-  // Generate Module entities and relations
-  const moduleResult = generateModules(fileRecords, chunkRecords);
-  const moduleRecords = moduleResult.modules;
-  const moduleContainsRelations = moduleResult.containsRelations;
-  const moduleContainsModuleRelations = moduleResult.containsModuleRelations;
-  const moduleExportsRelations = moduleResult.exportsRelations;
-  const projectResult = generateProjects(fileRecords);
-  const projectRecords = projectResult.projects;
-  const projectIncludesFileRelations = projectResult.includesFileRelations;
-  const projectReferencesProjectRelations = projectResult.referencesProjectRelations;
-  const namedResourceRelationResult = generateNamedResourceRelations(fileRecords);
-  const usesResourceRelations = namedResourceRelationResult.usesResourceRelations;
-  const usesSettingRelations = namedResourceRelationResult.usesSettingRelations;
-  const configIncludeRelations = generateConfigIncludeRelations(fileRecords);
-  const machineConfigRelations = generateMachineConfigRelations(fileRecords);
-  const sectionHandlerRelations = generateSectionHandlerRelations(fileRecords);
-  const usesConfigRelations = uniqueRelations([
-    ...namedResourceRelationResult.usesConfigRelations,
-    ...configIncludeRelations,
-    ...machineConfigRelations,
-    ...sectionHandlerRelations
-  ]);
-  const configTransformRelations = generateConfigTransformRelations(fileRecords);
-  memoryTrace.checkpoint("materialize:modules_projects_relations", {
-    modules: moduleRecords.length,
-    projects: projectRecords.length,
-    relations_contains: moduleContainsRelations.length,
-    relations_contains_module: moduleContainsModuleRelations.length,
-    relations_exports: moduleExportsRelations.length,
-    relations_includes_file: projectIncludesFileRelations.length,
-    relations_references_project: projectReferencesProjectRelations.length,
-    relations_uses_resource: usesResourceRelations.length,
-    relations_uses_setting: usesSettingRelations.length,
-    relations_uses_config: usesConfigRelations.length,
-    relations_transforms_config: configTransformRelations.length
-  });
-
-  if (verbose && moduleRecords.length > 0) {
-    console.log(`[ingest] modules=${moduleRecords.length} contains=${moduleContainsRelations.length} contains_module=${moduleContainsModuleRelations.length} exports=${moduleExportsRelations.length}`);
-  }
-  if (verbose && projectRecords.length > 0) {
-    console.log(
-      `[ingest] projects=${projectRecords.length} includes_file=${projectIncludesFileRelations.length} references_project=${projectReferencesProjectRelations.length}`
-    );
-  }
-  if (
-    verbose &&
-    (
-      usesResourceRelations.length > 0 ||
-      usesSettingRelations.length > 0 ||
-      usesConfigRelations.length > 0 ||
-      configTransformRelations.length > 0
-    )
-  ) {
-    console.log(
-      `[ingest] uses_resource=${usesResourceRelations.length} uses_setting=${usesSettingRelations.length} uses_config=${usesConfigRelations.length} transforms_config=${configTransformRelations.length}`
-    );
-  }
-
-  const ruleRecords = rules.map((rule) => ({
-    id: rule.id,
-    title: rule.id,
-    body: rule.description,
-    scope: "global",
-    updated_at: new Date().toISOString(),
-    source_of_truth: true,
-    trust_level: 95,
-    status: rule.enforce ? "active" : "draft",
-    priority: rule.priority
-  }));
-
-  const adrTokenIndex = new Map();
-  for (const adrRecord of adrRecords) {
-    for (const token of adrTokens(adrRecord)) {
-      if (!adrTokenIndex.has(token)) {
-        adrTokenIndex.set(token, adrRecord.id);
-      }
-    }
-  }
-
-  const supersedesRelations = [];
-  for (const adrRecord of adrRecords) {
-    const refs = findSupersedesReferences(adrRecord.body);
-    for (const ref of refs) {
-      const target = adrTokenIndex.get(normalizeToken(ref));
-      if (!target || target === adrRecord.id) {
-        continue;
-      }
-      adrRecord.supersedes_id = target;
-      supersedesRelations.push({
-        from: adrRecord.id,
-        to: target,
-        reason: `Supersedes ${ref}`
-      });
-    }
-  }
-
-  const constrainsRelations = [];
-  const implementsRelations = [];
-  const stagedDocumentCache = stageJsonl(path.join(CACHE_DIR, "documents.jsonl"), fileRecords);
-  const stagedFileEntityCache = stageJsonl(path.join(CACHE_DIR, "entities.file.jsonl"), fileRecords);
-  memoryTrace.checkpoint("writes:file_cache_staged", {
-    files: fileRecords.length,
-    file_content_records: countFileContentRecords(fileRecords)
-  });
-  memoryTrace.checkpoint("tokens:rule_matching_start", {
-    files: fileRecords.length,
-    rules: ruleRecords.length
-  });
-
-  const ruleMatchers = ruleRecords.map((ruleRecord) => ({
-    ruleRecord,
-    needle: ruleRecord.id.toLowerCase(),
-    keywords: normalizeRuleTokens(ruleRecord)
-  }));
-  const constrainsByKey = new Map();
-  const implementsByKey = new Map();
-  let fileTokenSetsProcessed = 0;
-  let fileContentRecordsReleased = 0;
-
-  for (const fileRecord of fileRecords) {
-    const lower = String(fileRecord.content ?? "").toLowerCase();
-    const tokens = fileTokenSet(fileRecord);
-    fileTokenSetsProcessed += 1;
-
-    for (const { ruleRecord, needle, keywords } of ruleMatchers) {
-      const explicitMention = lower.includes(needle);
-      const minimumMatches = fileRecord.kind === "CODE" ? 1 : 2;
-      const keywordResult = explicitMention
-        ? { matched: false, sample: [] }
-        : collectRuleKeywordMatch(keywords, tokens, minimumMatches);
-
-      if (!explicitMention && !keywordResult.matched) {
-        continue;
-      }
-
-      const constrainsKey = `${ruleRecord.id}|${fileRecord.id}`;
-      if (!constrainsByKey.has(constrainsKey)) {
-        constrainsByKey.set(constrainsKey, {
-          from: ruleRecord.id,
-          to: fileRecord.id,
-          note: explicitMention
-            ? `Mentions ${ruleRecord.id}`
-            : `Keyword match ${keywordResult.sample.join(", ")}`
-        });
-      }
-
-      if (fileRecord.kind === "CODE") {
-        const implementsKey = `${fileRecord.id}|${ruleRecord.id}`;
-        if (!implementsByKey.has(implementsKey)) {
-          implementsByKey.set(implementsKey, {
-            from: fileRecord.id,
-            to: ruleRecord.id,
-            note: explicitMention
-              ? `Code references ${ruleRecord.id}`
-              : `Code keywords ${keywordResult.sample.join(", ")}`
-          });
-        }
-      }
-    }
-
-    if (Object.prototype.hasOwnProperty.call(fileRecord, "content")) {
-      delete fileRecord.content;
-      fileContentRecordsReleased += 1;
-    }
-  }
-
-  for (const { ruleRecord } of ruleMatchers) {
-    for (const fileRecord of fileRecords) {
-      const constrainsKey = `${ruleRecord.id}|${fileRecord.id}`;
-      const constrainsRelation = constrainsByKey.get(constrainsKey);
-      if (constrainsRelation) {
-        constrainsRelations.push(constrainsRelation);
-        constrainsByKey.delete(constrainsKey);
-      }
-      if (fileRecord.kind === "CODE") {
-        const implementsKey = `${fileRecord.id}|${ruleRecord.id}`;
-        const implementsRelation = implementsByKey.get(implementsKey);
-        if (implementsRelation) {
-          implementsRelations.push(implementsRelation);
-          implementsByKey.delete(implementsKey);
-        }
-      }
-    }
-  }
-
-  memoryTrace.checkpoint("tokens:rule_matching_complete", {
-    file_token_sets: fileTokenSetsProcessed,
-    file_token_sets_retained: 0,
-    file_content_records_released: fileContentRecordsReleased,
-    file_content_records_retained: countFileContentRecords(fileRecords),
-    rules: ruleRecords.length,
-    relations_constrains: constrainsRelations.length,
-    relations_implements: implementsRelations.length,
-    relations_supersedes: supersedesRelations.length
-  });
-
-  memoryTrace.checkpoint("writes:cache_start", {
-    files: fileRecords.length,
-    adrs: adrRecords.length,
-    rules: ruleRecords.length,
-    chunks: chunkRecords.length
-  });
-  stagedDocumentCache.commit();
-  stagedFileEntityCache.commit();
-  writeJsonl(path.join(CACHE_DIR, "entities.adr.jsonl"), adrRecords);
-  writeJsonl(path.join(CACHE_DIR, "entities.rule.jsonl"), ruleRecords);
-  writeJsonl(path.join(CACHE_DIR, "entities.chunk.jsonl"), chunkRecords);
-  writeJsonl(path.join(CACHE_DIR, "relations.supersedes.jsonl"), supersedesRelations);
-  writeJsonl(path.join(CACHE_DIR, "relations.constrains.jsonl"), constrainsRelations);
-  writeJsonl(path.join(CACHE_DIR, "relations.implements.jsonl"), implementsRelations);
-  writeJsonl(path.join(CACHE_DIR, "relations.defines.jsonl"), validDefinesRelations);
-  writeJsonl(path.join(CACHE_DIR, "relations.calls.jsonl"), validCallsRelations);
-  writeJsonl(path.join(CACHE_DIR, "relations.imports.jsonl"), validImportsRelations);
-  writeJsonl(path.join(CACHE_DIR, "relations.calls_sql.jsonl"), validCallsSqlRelations);
-  writeJsonl(path.join(CACHE_DIR, "relations.uses_config_key.jsonl"), validUsesConfigKeyRelations);
-  writeJsonl(path.join(CACHE_DIR, "relations.uses_resource_key.jsonl"), validUsesResourceKeyRelations);
-  writeJsonl(path.join(CACHE_DIR, "relations.uses_setting_key.jsonl"), validUsesSettingKeyRelations);
-  writeJsonl(path.join(CACHE_DIR, "entities.module.jsonl"), moduleRecords);
-  writeJsonl(path.join(CACHE_DIR, "relations.contains.jsonl"), moduleContainsRelations);
-  writeJsonl(path.join(CACHE_DIR, "relations.contains_module.jsonl"), moduleContainsModuleRelations);
-  writeJsonl(path.join(CACHE_DIR, "relations.exports.jsonl"), moduleExportsRelations);
-  writeJsonl(path.join(CACHE_DIR, "entities.project.jsonl"), projectRecords);
-  writeJsonl(path.join(CACHE_DIR, "relations.includes_file.jsonl"), projectIncludesFileRelations);
-  writeJsonl(path.join(CACHE_DIR, "relations.uses_resource.jsonl"), usesResourceRelations);
-  writeJsonl(path.join(CACHE_DIR, "relations.uses_setting.jsonl"), usesSettingRelations);
-  writeJsonl(path.join(CACHE_DIR, "relations.uses_config.jsonl"), usesConfigRelations);
-  writeJsonl(path.join(CACHE_DIR, "relations.transforms_config.jsonl"), configTransformRelations);
-  writeJsonl(
-    path.join(CACHE_DIR, "relations.references_project.jsonl"),
-    projectReferencesProjectRelations
-  );
-  memoryTrace.checkpoint("writes:cache_complete", {
-    jsonl_files: 26,
-    files: fileRecords.length,
-    chunks: chunkRecords.length
-  });
-
-  memoryTrace.checkpoint("writes:db_start", {
-    tsv_files: 21
-  });
-  writeTsv(
-    path.join(DB_IMPORT_DIR, "file_nodes.tsv"),
-    [
-      "id",
-      "path",
-      "kind",
-      "excerpt",
-      "checksum",
-      "updated_at",
-      "source_of_truth",
-      "trust_level",
-      "status"
-    ],
-    mapRows(fileRecords, (record) => [
-      record.id,
-      record.path,
-      record.kind,
-      record.excerpt,
-      record.checksum,
-      record.updated_at,
-      record.source_of_truth,
-      record.trust_level,
-      record.status
-    ])
-  );
-
-  writeTsv(
-    path.join(DB_IMPORT_DIR, "rule_nodes.tsv"),
-    [
-      "id",
-      "title",
-      "body",
-      "scope",
-      "priority",
-      "updated_at",
-      "source_of_truth",
-      "trust_level",
-      "status"
-    ],
-    mapRows(ruleRecords, (record) => [
-      record.id,
-      record.title,
-      record.body,
-      record.scope,
-      record.priority,
-      record.updated_at,
-      record.source_of_truth,
-      record.trust_level,
-      record.status
-    ])
-  );
-
-  writeTsv(
-    path.join(DB_IMPORT_DIR, "adr_nodes.tsv"),
-    [
-      "id",
-      "path",
-      "title",
-      "body",
-      "decision_date",
-      "supersedes_id",
-      "source_of_truth",
-      "trust_level",
-      "status"
-    ],
-    mapRows(adrRecords, (record) => [
-      record.id,
-      record.path,
-      record.title,
-      record.body,
-      record.decision_date,
-      record.supersedes_id,
-      record.source_of_truth,
-      record.trust_level,
-      record.status
-    ])
-  );
-
-  writeTsv(
-    path.join(DB_IMPORT_DIR, "constrains_rel.tsv"),
-    ["from", "to", "note"],
-    mapRows(constrainsRelations, (record) => [record.from, record.to, record.note])
-  );
-
-  writeTsv(
-    path.join(DB_IMPORT_DIR, "implements_rel.tsv"),
-    ["from", "to", "note"],
-    mapRows(implementsRelations, (record) => [record.from, record.to, record.note])
-  );
-
-  writeTsv(
-    path.join(DB_IMPORT_DIR, "supersedes_rel.tsv"),
-    ["from", "to", "reason"],
-    mapRows(supersedesRelations, (record) => [record.from, record.to, record.reason])
-  );
-
-  writeTsv(
-    path.join(DB_IMPORT_DIR, "chunk_nodes.tsv"),
-    [
-      "id",
-      "file_id",
-      "name",
-      "kind",
-      "signature",
-      "body",
-      "start_line",
-      "end_line",
-      "language",
-      "checksum",
-      "updated_at",
-      "trust_level"
-    ],
-    mapRows(chunkRecords, (record) => [
-      record.id,
-      record.file_id,
-      record.name,
-      record.kind,
-      record.signature,
-      record.body,
-      record.start_line,
-      record.end_line,
-      record.language,
-      record.checksum,
-      record.updated_at,
-      record.trust_level
-    ])
-  );
-
-  writeTsv(
-    path.join(DB_IMPORT_DIR, "defines_rel.tsv"),
-    ["from", "to"],
-    mapRows(validDefinesRelations, (record) => [record.from, record.to])
-  );
-
-  writeTsv(
-    path.join(DB_IMPORT_DIR, "calls_rel.tsv"),
-    ["from", "to", "call_type"],
-    mapRows(validCallsRelations, (record) => [record.from, record.to, record.call_type])
-  );
-
-  writeTsv(
-    path.join(DB_IMPORT_DIR, "imports_rel.tsv"),
-    ["from", "to", "import_name"],
-    mapRows(validImportsRelations, (record) => [record.from, record.to, record.import_name])
-  );
-
-  writeTsv(
-    path.join(DB_IMPORT_DIR, "calls_sql_rel.tsv"),
-    ["from", "to", "note"],
-    mapRows(validCallsSqlRelations, (record) => [record.from, record.to, record.note])
-  );
-
-  writeTsv(
-    path.join(DB_IMPORT_DIR, "uses_config_key_rel.tsv"),
-    ["from", "to", "note"],
-    mapRows(validUsesConfigKeyRelations, (record) => [record.from, record.to, record.note])
-  );
-
-  writeTsv(
-    path.join(DB_IMPORT_DIR, "uses_resource_key_rel.tsv"),
-    ["from", "to", "note"],
-    mapRows(validUsesResourceKeyRelations, (record) => [record.from, record.to, record.note])
-  );
-
-  writeTsv(
-    path.join(DB_IMPORT_DIR, "uses_setting_key_rel.tsv"),
-    ["from", "to", "note"],
-    mapRows(validUsesSettingKeyRelations, (record) => [record.from, record.to, record.note])
-  );
-
-  writeTsv(
-    path.join(DB_IMPORT_DIR, "project_nodes.tsv"),
-    [
-      "id",
-      "path",
-      "name",
-      "kind",
-      "language",
-      "target_framework",
-      "summary",
-      "file_count",
-      "updated_at",
-      "source_of_truth",
-      "trust_level",
-      "status"
-    ],
-    mapRows(projectRecords, (record) => [
-      record.id,
-      record.path,
-      record.name,
-      record.kind,
-      record.language,
-      record.target_framework,
-      record.summary,
-      record.file_count,
-      record.updated_at,
-      record.source_of_truth,
-      record.trust_level,
-      record.status
-    ])
-  );
-
-  writeTsv(
-    path.join(DB_IMPORT_DIR, "includes_file_rel.tsv"),
-    ["from", "to"],
-    mapRows(projectIncludesFileRelations, (record) => [record.from, record.to])
-  );
-
-  writeTsv(
-    path.join(DB_IMPORT_DIR, "references_project_rel.tsv"),
-    ["from", "to", "note"],
-    mapRows(projectReferencesProjectRelations, (record) => [record.from, record.to, record.note])
-  );
-
-  writeTsv(
-    path.join(DB_IMPORT_DIR, "uses_resource_rel.tsv"),
-    ["from", "to", "note"],
-    mapRows(usesResourceRelations, (record) => [record.from, record.to, record.note])
-  );
-
-  writeTsv(
-    path.join(DB_IMPORT_DIR, "uses_setting_rel.tsv"),
-    ["from", "to", "note"],
-    mapRows(usesSettingRelations, (record) => [record.from, record.to, record.note])
-  );
-
-  writeTsv(
-    path.join(DB_IMPORT_DIR, "uses_config_rel.tsv"),
-    ["from", "to", "note"],
-    mapRows(usesConfigRelations, (record) => [record.from, record.to, record.note])
-  );
-
-  writeTsv(
-    path.join(DB_IMPORT_DIR, "transforms_config_rel.tsv"),
-    ["from", "to", "note"],
-    mapRows(configTransformRelations, (record) => [record.from, record.to, record.note])
-  );
-  memoryTrace.checkpoint("writes:db_complete", {
-    tsv_files: 21
-  });
-
-  const manifest = {
-    generated_at: new Date().toISOString(),
-    mode,
-    source_paths: sourcePaths,
-    counts: {
-      files: fileRecords.length,
-      adrs: adrRecords.length,
-      rules: ruleRecords.length,
-      chunks: chunkRecords.length,
-      relations_constrains: constrainsRelations.length,
-      relations_implements: implementsRelations.length,
-      relations_supersedes: supersedesRelations.length,
-      relations_defines: validDefinesRelations.length,
-      relations_calls: validCallsRelations.length,
-      relations_imports: validImportsRelations.length,
-      relations_calls_sql: validCallsSqlRelations.length,
-      relations_uses_config_key: validUsesConfigKeyRelations.length,
-      relations_uses_resource_key: validUsesResourceKeyRelations.length,
-      relations_uses_setting_key: validUsesSettingKeyRelations.length,
-      modules: moduleRecords.length,
-      relations_contains: moduleContainsRelations.length,
-      relations_contains_module: moduleContainsModuleRelations.length,
-      relations_exports: moduleExportsRelations.length,
-      projects: projectRecords.length,
-      relations_includes_file: projectIncludesFileRelations.length,
-      relations_references_project: projectReferencesProjectRelations.length,
-      relations_uses_resource: usesResourceRelations.length,
-      relations_uses_setting: usesSettingRelations.length,
-      relations_uses_config: usesConfigRelations.length,
-      relations_transforms_config: configTransformRelations.length
-    },
-    skipped,
-    parser_health: parserHealth,
-    incremental_mode: incrementalMode,
-    changed_candidates: candidates.size,
-    deleted_paths: deletedRelPaths.length
-  };
-
-  fs.writeFileSync(path.join(CACHE_DIR, "manifest.json"), `${JSON.stringify(manifest, null, 2)}\n`);
-  memoryTrace.checkpoint("writes:manifest_complete", {
-    files: manifest.counts.files,
-    chunks: manifest.counts.chunks,
-    total_relations:
-      manifest.counts.relations_constrains +
-      manifest.counts.relations_implements +
-      manifest.counts.relations_supersedes +
-      manifest.counts.relations_defines +
-      manifest.counts.relations_calls +
-      manifest.counts.relations_imports +
-      manifest.counts.relations_calls_sql +
-      manifest.counts.relations_uses_config_key +
-      manifest.counts.relations_uses_resource_key +
-      manifest.counts.relations_uses_setting_key +
-      manifest.counts.relations_contains +
-      manifest.counts.relations_contains_module +
-      manifest.counts.relations_exports +
-      manifest.counts.relations_includes_file +
-      manifest.counts.relations_references_project +
-      manifest.counts.relations_uses_resource +
-      manifest.counts.relations_uses_setting +
-      manifest.counts.relations_uses_config +
-      manifest.counts.relations_transforms_config
-  });
-
-  console.log(`[ingest] mode=${mode}`);
-  if (incrementalMode) {
-    console.log(
-      `[ingest] incremental changed_candidates=${manifest.changed_candidates} deleted_paths=${manifest.deleted_paths}`
-    );
-  } else if (mode === "changed") {
-    console.log("[ingest] incremental diff unavailable; processed full source set");
-  }
-  console.log(`[ingest] files=${manifest.counts.files} adrs=${manifest.counts.adrs} rules=${manifest.counts.rules} chunks=${manifest.counts.chunks}`);
-  console.log(
-    `[ingest] rels constrains=${manifest.counts.relations_constrains} implements=${manifest.counts.relations_implements} supersedes=${manifest.counts.relations_supersedes}`
-  );
-  console.log(
-    `[ingest] rels defines=${manifest.counts.relations_defines} calls=${manifest.counts.relations_calls} imports=${manifest.counts.relations_imports} calls_sql=${manifest.counts.relations_calls_sql} uses_config_key=${manifest.counts.relations_uses_config_key} uses_resource_key=${manifest.counts.relations_uses_resource_key} uses_setting_key=${manifest.counts.relations_uses_setting_key}`
-  );
-  console.log(
-    `[ingest] rels contains=${manifest.counts.relations_contains} contains_module=${manifest.counts.relations_contains_module} exports=${manifest.counts.relations_exports} includes_file=${manifest.counts.relations_includes_file} references_project=${manifest.counts.relations_references_project} uses_resource=${manifest.counts.relations_uses_resource} uses_setting=${manifest.counts.relations_uses_setting} uses_config=${manifest.counts.relations_uses_config} transforms_config=${manifest.counts.relations_transforms_config}`
-  );
-  console.log(
-    `[ingest] skipped unsupported=${skipped.unsupported} too_large=${skipped.tooLarge} binary=${skipped.binary}`
-  );
-  console.log(`[ingest] wrote cache + db import files under .context/`);
-}
-
-const isMainModule = process.argv[1] && path.resolve(process.argv[1]) === path.resolve(__filename);
+const isMainModule =
+  process.argv[1] &&
+  path.resolve(process.argv[1]) === path.resolve(fileURLToPath(import.meta.url));
 if (isMainModule) {
   main().catch((error) => {
     console.error(error instanceof Error ? error.message : String(error));
@@ -3888,23 +13,4 @@ if (isMainModule) {
   });
 }
 
-export {
-  buildChunkAliasIndexes,
-  buildSqlResourceReferenceMap,
-  detectKind,
-  extractSqlObjectReferencesFromContent,
-  generateChunkDescription,
-  generateConfigIncludeRelations,
-  generateConfigTransformKeyRelations,
-  generateMachineConfigRelations,
-  generateConfigTransformRelations,
-  generateModuleSummary,
-  generateModules,
-  generateNamedResourceRelations,
-  generateProjects,
-  generateSectionHandlerRelations,
-  getChunkParserForExtension,
-  parseFilesInWorkers,
-  resolveIngestWorkerCount,
-  resolveRelativeImportTargetId
-};
+export * from "./lib/ingest/main.mjs";