@dahch/muninn 0.0.0-stage → 0.2.0

package/dist/indexer/ast-indexer.js

@@ -0,0 +1,445 @@
+import path from "node:path";
+import fs from "node:fs";
+import crypto from "node:crypto";
+import ts from "typescript";
+/**
+ * Normalizes file path to forward slashes.
+ */
+export function normalizePath(p) {
+    return p.replace(/\\/g, "/");
+}
+/**
+ * Normalizes relative module specifiers against the importing file's directory.
+ * Maps .js, .mjs, .cjs to .ts, and .jsx to .tsx, while keeping extensionless specifiers bare.
+ */
+export function normalizeModuleSpecifier(filePath, specifier) {
+    if (!specifier.startsWith(".")) {
+        return specifier;
+    }
+    const fileDir = path.dirname(filePath);
+    let resolved = normalizePath(path.join(fileDir, specifier));
+    if (resolved.endsWith(".js")) {
+        resolved = resolved.slice(0, -3) + ".ts";
+    }
+    else if (resolved.endsWith(".mjs")) {
+        resolved = resolved.slice(0, -4) + ".ts";
+    }
+    else if (resolved.endsWith(".cjs")) {
+        resolved = resolved.slice(0, -4) + ".ts";
+    }
+    else if (resolved.endsWith(".jsx")) {
+        resolved = resolved.slice(0, -4) + ".tsx";
+    }
+    return resolved;
+}
+/**
+ * Extracts symbols and dependencies from TypeScript / JavaScript source code.
+ */
+export function extractSymbolsFromSource(filePath, sourceText) {
+    const result = extractAstData(filePath, sourceText);
+    return result.symbols;
+}
+/**
+ * Comprehensive AST traversal returning both symbols and inter-symbol dependencies.
+ */
+export function extractAstData(filePath, sourceText) {
+    const normalizedFilePath = normalizePath(filePath);
+    const sourceFile = ts.createSourceFile(normalizedFilePath, sourceText, ts.ScriptTarget.Latest, false // REV-010: setParentNodes = false for low memory and high performance
+    );
+    const symbols = [];
+    const dependencies = [];
+    function getLine(pos) {
+        return sourceFile.getLineAndCharacterOfPosition(pos).line + 1;
+    }
+    function isNodeExported(node) {
+        const flags = ts.getCombinedModifierFlags(node);
+        if ((flags & ts.ModifierFlags.Export) !== 0) {
+            return true;
+        }
+        if (ts.canHaveModifiers(node)) {
+            const modifiers = ts.getModifiers(node);
+            return Boolean(modifiers?.some((m) => m.kind === ts.SyntaxKind.ExportKeyword));
+        }
+        return false;
+    }
+    // 1. Traverse top-level nodes for declarations and imports
+    ts.forEachChild(sourceFile, (node) => {
+        // Import declarations
+        if (ts.isImportDeclaration(node)) {
+            if (ts.isStringLiteral(node.moduleSpecifier)) {
+                const rawSpecifier = node.moduleSpecifier.text;
+                const specifier = normalizeModuleSpecifier(normalizedFilePath, rawSpecifier);
+                dependencies.push({
+                    sourceIdentifier: normalizedFilePath,
+                    targetIdentifier: specifier,
+                    relationType: "imports",
+                });
+                // Also record named imports
+                if (node.importClause?.namedBindings &&
+                    ts.isNamedImports(node.importClause.namedBindings)) {
+                    for (const spec of node.importClause.namedBindings.elements) {
+                        dependencies.push({
+                            sourceIdentifier: normalizedFilePath,
+                            targetIdentifier: `${specifier}::${spec.name.text}`,
+                            relationType: "imports",
+                        });
+                    }
+                }
+            }
+            return;
+        }
+        // Export declarations with module specifiers: export { x } from './foo.js'
+        if (ts.isExportDeclaration(node) &&
+            node.moduleSpecifier &&
+            ts.isStringLiteral(node.moduleSpecifier)) {
+            const rawSpecifier = node.moduleSpecifier.text;
+            const specifier = normalizeModuleSpecifier(normalizedFilePath, rawSpecifier);
+            dependencies.push({
+                sourceIdentifier: normalizedFilePath,
+                targetIdentifier: specifier,
+                relationType: "imports",
+            });
+            if (node.exportClause && ts.isNamedExports(node.exportClause)) {
+                for (const spec of node.exportClause.elements) {
+                    dependencies.push({
+                        sourceIdentifier: normalizedFilePath,
+                        targetIdentifier: `${specifier}::${spec.name.text}`,
+                        relationType: "imports",
+                    });
+                }
+            }
+            return;
+        }
+        // Top-level or exported function declarations
+        if (ts.isFunctionDeclaration(node)) {
+            if (node.name && ts.isIdentifier(node.name)) {
+                const name = node.name.text;
+                const identifier = `${normalizedFilePath}::${name}`;
+                const isExported = isNodeExported(node);
+                symbols.push({
+                    name,
+                    identifier,
+                    filePath: normalizedFilePath,
+                    entityType: "function",
+                    startLine: getLine(node.getStart(sourceFile)),
+                    endLine: getLine(node.getEnd()),
+                    isExported,
+                });
+            }
+            return;
+        }
+        // Exported variable statements (arrow functions or function expressions)
+        if (ts.isVariableStatement(node)) {
+            const isExported = isNodeExported(node);
+            for (const decl of node.declarationList.declarations) {
+                if (ts.isIdentifier(decl.name) &&
+                    decl.initializer &&
+                    (ts.isArrowFunction(decl.initializer) ||
+                        ts.isFunctionExpression(decl.initializer))) {
+                    const name = decl.name.text;
+                    const identifier = `${normalizedFilePath}::${name}`;
+                    symbols.push({
+                        name,
+                        identifier,
+                        filePath: normalizedFilePath,
+                        entityType: "function",
+                        startLine: getLine(decl.getStart(sourceFile)),
+                        endLine: getLine(decl.getEnd()),
+                        isExported,
+                    });
+                }
+            }
+            return;
+        }
+        // Class declarations
+        if (ts.isClassDeclaration(node)) {
+            const className = node.name ? node.name.text : "AnonymousClass";
+            const classIdentifier = `${normalizedFilePath}::${className}`;
+            const isExported = isNodeExported(node);
+            symbols.push({
+                name: className,
+                identifier: classIdentifier,
+                filePath: normalizedFilePath,
+                entityType: "class",
+                startLine: getLine(node.getStart(sourceFile)),
+                endLine: getLine(node.getEnd()),
+                isExported,
+            });
+            // Class heritage clauses: extends and implements
+            if (node.heritageClauses) {
+                for (const clause of node.heritageClauses) {
+                    if (clause.token === ts.SyntaxKind.ExtendsKeyword) {
+                        for (const typeNode of clause.types) {
+                            const target = typeNode.expression.getText(sourceFile);
+                            dependencies.push({
+                                sourceIdentifier: classIdentifier,
+                                targetIdentifier: target,
+                                relationType: "extends",
+                            });
+                        }
+                    }
+                    else if (clause.token === ts.SyntaxKind.ImplementsKeyword) {
+                        for (const typeNode of clause.types) {
+                            const target = typeNode.expression.getText(sourceFile);
+                            dependencies.push({
+                                sourceIdentifier: classIdentifier,
+                                targetIdentifier: target,
+                                relationType: "implements",
+                            });
+                        }
+                    }
+                }
+            }
+            // Public class methods
+            for (const member of node.members) {
+                if (ts.isMethodDeclaration(member)) {
+                    if (member.name && ts.isIdentifier(member.name)) {
+                        const methodName = member.name.text;
+                        // Check access modifiers: skip private / protected methods
+                        const isPrivate = member.modifiers?.some((m) => m.kind === ts.SyntaxKind.PrivateKeyword ||
+                            m.kind === ts.SyntaxKind.ProtectedKeyword);
+                        if (!isPrivate && !methodName.startsWith("#")) {
+                            const methodIdentifier = `${normalizedFilePath}::${className}.${methodName}`;
+                            symbols.push({
+                                name: `${className}.${methodName}`,
+                                identifier: methodIdentifier,
+                                filePath: normalizedFilePath,
+                                entityType: "function",
+                                startLine: getLine(member.getStart(sourceFile)),
+                                endLine: getLine(member.getEnd()),
+                                isExported,
+                            });
+                        }
+                    }
+                }
+            }
+            return;
+        }
+        // Interface declarations
+        if (ts.isInterfaceDeclaration(node)) {
+            const name = node.name.text;
+            const identifier = `${normalizedFilePath}::${name}`;
+            const isExported = isNodeExported(node);
+            symbols.push({
+                name,
+                identifier,
+                filePath: normalizedFilePath,
+                entityType: "interface",
+                startLine: getLine(node.getStart(sourceFile)),
+                endLine: getLine(node.getEnd()),
+                isExported,
+            });
+            if (node.heritageClauses) {
+                for (const clause of node.heritageClauses) {
+                    if (clause.token === ts.SyntaxKind.ExtendsKeyword) {
+                        for (const typeNode of clause.types) {
+                            const target = typeNode.expression.getText(sourceFile);
+                            dependencies.push({
+                                sourceIdentifier: identifier,
+                                targetIdentifier: target,
+                                relationType: "extends",
+                            });
+                        }
+                    }
+                }
+            }
+            return;
+        }
+        // Type Alias declarations
+        if (ts.isTypeAliasDeclaration(node)) {
+            const name = node.name.text;
+            const identifier = `${normalizedFilePath}::${name}`;
+            const isExported = isNodeExported(node);
+            symbols.push({
+                name,
+                identifier,
+                filePath: normalizedFilePath,
+                entityType: "interface",
+                startLine: getLine(node.getStart(sourceFile)),
+                endLine: getLine(node.getEnd()),
+                isExported,
+            });
+            return;
+        }
+    });
+    return {
+        filePath: normalizedFilePath,
+        symbols,
+        dependencies,
+    };
+}
+const SUPPORTED_EXTENSIONS = new Set([
+    ".ts",
+    ".tsx",
+    ".mts",
+    ".cts",
+    ".js",
+    ".jsx",
+    ".mjs",
+    ".cjs",
+]);
+const MAX_FILE_SIZE_BYTES = 2 * 1024 * 1024; // 2MB
+/**
+ * Indexes a collection of files into Muninn's entities and entity_dependencies tables.
+ *
+ * Execution is cleanly separated into two stages (REV-001):
+ * 1. Synchronous file reading, filtering, validation, and AST parsing are performed in-memory outside any database transaction.
+ * 2. SQLite batch operations are executed inside a short-lived transaction with zombie entity pruning (REV-003, SEC-003).
+ */
+export function indexFilesIntoMuninn(memoryService, filePaths, options) {
+    const db = memoryService.db;
+    const project = memoryService.currentProject;
+    const projectRoot = options?.projectRoot ?? project.root_path;
+    // Step 1: Read files and parse AST in-memory outside the database transaction (REV-001)
+    const parsedFiles = [];
+    const seenPaths = new Set();
+    for (const rawFilePath of filePaths) {
+        try {
+            // Path Traversal Containment (SEC-001)
+            const absolutePath = path.resolve(projectRoot, rawFilePath);
+            const relPath = path.relative(projectRoot, absolutePath);
+            if (relPath.startsWith("..") || path.isAbsolute(relPath)) {
+                continue;
+            }
+            // Filter by supported extensions
+            const ext = path.extname(absolutePath).toLowerCase();
+            if (!SUPPORTED_EXTENSIONS.has(ext)) {
+                continue;
+            }
+            // Check file exists, is regular file, and within max file size (2MB)
+            const stat = fs.statSync(absolutePath);
+            if (!stat.isFile() || stat.size > MAX_FILE_SIZE_BYTES) {
+                continue;
+            }
+            const normalizedRelPath = normalizePath(relPath);
+            if (seenPaths.has(normalizedRelPath)) {
+                continue;
+            }
+            seenPaths.add(normalizedRelPath);
+            // Read content and parse AST
+            const content = fs.readFileSync(absolutePath, "utf-8");
+            const ast = extractAstData(normalizedRelPath, content);
+            parsedFiles.push({
+                relPath: normalizedRelPath,
+                ast,
+            });
+        }
+        catch {
+            // Individual file read / syntax errors don't abort other files (REV-007)
+            continue;
+        }
+    }
+    // Step 2: Open db.transaction() strictly for the SQLite database batch inserts/updates
+    let totalFiles = 0;
+    let totalSymbols = 0;
+    let totalDependencies = 0;
+    db.transaction(() => {
+        const findEntityStmt = db.prepare(`SELECT id, project_id, entity_type, identifier, file_path
+       FROM entities
+       WHERE project_id = ? AND identifier = ?`);
+        const insertEntityStmt = db.prepare(`INSERT INTO entities (id, project_id, entity_type, identifier, file_path)
+       VALUES (?, ?, ?, ?, ?)`);
+        const updateEntityStmt = db.prepare(`UPDATE entities
+       SET entity_type = ?, file_path = ?
+       WHERE id = ?`);
+        const deleteEntityStmt = db.prepare(`DELETE FROM entities
+       WHERE id = ?`);
+        const getEntitiesForFileStmt = db.prepare(`SELECT id, identifier
+       FROM entities
+       WHERE project_id = ? AND file_path = ?`);
+        const insertDepStmt = db.prepare(`INSERT OR IGNORE INTO entity_dependencies (source_entity_id, target_entity_id, relation_type)
+       VALUES (?, ?, ?)`);
+        const deleteOldDepsStmt = db.prepare(`DELETE FROM entity_dependencies
+       WHERE source_entity_id = ?`);
+        function getOrCreateEntity(identifier, entityType, filePath, isAuthoritative = false) {
+            let entity = findEntityStmt.get(project.id, identifier);
+            if (entity) {
+                if (isAuthoritative &&
+                    (entity.entity_type !== entityType || entity.file_path !== filePath)) {
+                    updateEntityStmt.run(entityType, filePath, entity.id);
+                    entity.entity_type = entityType;
+                    entity.file_path = filePath;
+                }
+                return entity;
+            }
+            const entityId = crypto.randomUUID();
+            insertEntityStmt.run(entityId, project.id, entityType, identifier, filePath);
+            return {
+                id: entityId,
+                project_id: project.id,
+                entity_type: entityType,
+                identifier,
+                file_path: filePath,
+            };
+        }
+        for (const { relPath, ast } of parsedFiles) {
+            totalFiles++;
+            // 1. Ensure file entity itself exists
+            const fileEntity = getOrCreateEntity(relPath, "file", relPath, true);
+            // Clean existing outgoing dependencies for the file
+            deleteOldDepsStmt.run(fileEntity.id);
+            // 2. Collect active identifiers for this file (the file entity + all extracted symbols)
+            const activeIdentifiers = new Set();
+            activeIdentifiers.add(relPath);
+            for (const sym of ast.symbols) {
+                activeIdentifiers.add(sym.identifier);
+            }
+            // 3. Prune zombie / ghost entities for this file (REV-003, SEC-003)
+            // Any entity belonging to (project_id, file_path) whose identifier is NOT in activeIdentifiers is removed.
+            // ON DELETE CASCADE automatically purges related rows in entity_dependencies and observation_entities.
+            const existingFileEntities = getEntitiesForFileStmt.all(project.id, relPath);
+            for (const existing of existingFileEntities) {
+                if (!activeIdentifiers.has(existing.identifier)) {
+                    deleteEntityStmt.run(existing.id);
+                }
+            }
+            // Map from identifier to entity id for this file
+            const entityMap = new Map();
+            entityMap.set(relPath, fileEntity.id);
+            for (const sym of ast.symbols) {
+                totalSymbols++;
+                const symbolEntity = getOrCreateEntity(sym.identifier, sym.entityType, sym.filePath, true);
+                entityMap.set(sym.identifier, symbolEntity.id);
+                // Clean existing outgoing dependencies for this symbol before re-populating
+                deleteOldDepsStmt.run(symbolEntity.id);
+                // Link symbol to file as a reference
+                insertDepStmt.run(fileEntity.id, symbolEntity.id, "references");
+                totalDependencies++;
+            }
+            // 4. Insert dependencies
+            for (const dep of ast.dependencies) {
+                const sourceId = entityMap.get(dep.sourceIdentifier) ??
+                    getOrCreateEntity(dep.sourceIdentifier, "file", relPath, false).id;
+                let targetEntityType = "module";
+                let targetFilePath = dep.targetIdentifier;
+                if (dep.relationType === "implements" ||
+                    dep.relationType === "extends") {
+                    targetEntityType = "interface";
+                }
+                else if (dep.targetIdentifier.endsWith(".ts") ||
+                    dep.targetIdentifier.endsWith(".tsx") ||
+                    dep.targetIdentifier.endsWith(".mts") ||
+                    dep.targetIdentifier.endsWith(".cts") ||
+                    dep.targetIdentifier.endsWith(".js") ||
+                    dep.targetIdentifier.endsWith(".jsx") ||
+                    dep.targetIdentifier.endsWith(".mjs") ||
+                    dep.targetIdentifier.endsWith(".cjs")) {
+                    targetEntityType = "file";
+                }
+                else if (dep.targetIdentifier.includes("::")) {
+                    const [filePart] = dep.targetIdentifier.split("::");
+                    targetFilePath = filePart;
+                }
+                const targetEntity = getOrCreateEntity(dep.targetIdentifier, targetEntityType, targetFilePath, false);
+                insertDepStmt.run(sourceId, targetEntity.id, dep.relationType);
+                totalDependencies++;
+            }
+        }
+    })();
+    return {
+        indexedFiles: totalFiles,
+        indexedSymbols: totalSymbols,
+        indexedDependencies: totalDependencies,
+    };
+}
+//# sourceMappingURL=ast-indexer.js.map

package/dist/indexer/ast-indexer.js.map

@@ -0,0 +1 @@
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package/dist/indexer/index.d.ts

@@ -0,0 +1,2 @@
+export * from "./ast-indexer.js";
+//# sourceMappingURL=index.d.ts.map

package/dist/indexer/index.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/indexer/index.ts"],"names":[],"mappings":"AAAA,cAAc,kBAAkB,CAAC"}

package/dist/indexer/index.js

@@ -0,0 +1,2 @@
+export * from "./ast-indexer.js";
+//# sourceMappingURL=index.js.map

package/dist/indexer/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/indexer/index.ts"],"names":[],"mappings":"AAAA,cAAc,kBAAkB,CAAC"}

package/dist/mcp/index.d.ts

@@ -0,0 +1,2 @@
+export * from "./server.js";
+//# sourceMappingURL=index.d.ts.map

package/dist/mcp/index.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/mcp/index.ts"],"names":[],"mappings":"AAAA,cAAc,aAAa,CAAC"}

package/dist/mcp/index.js

@@ -0,0 +1,2 @@
+export * from "./server.js";
+//# sourceMappingURL=index.js.map

package/dist/mcp/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/mcp/index.ts"],"names":[],"mappings":"AAAA,cAAc,aAAa,CAAC"}