@czi-sds/mcp 0.18.0 → 0.18.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
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@@ -261,7 +261,7 @@ export default App;
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### Residue value overlay
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A `residueOverlay` paints arbitrary per-residue values over the structure, taking over from pLDDT coloring while it is set. The `values` map is keyed by 0-based residue index, so the first residue of the chain is `0`. Values are normalized into `min`-`max` and sampled from a color scale; residues at or below `min`, and those missing from the map, render in a neutral gray. The legend switches to the overlay's scale and its `label`, and the per-residue readout reports the value under the cursor.
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A `residueOverlay` paints arbitrary per-residue values over the structure, taking over from pLDDT coloring while it is set. The `values` map is keyed by 0-based residue index, so the first residue of the chain is `0`. Values are normalized into `min`-`max` and sampled from a color scale; residues at or below `min`, and those missing from the map, render in a neutral gray. The legend switches to the overlay's scale and its `label`, and the per-residue readout reports the value under the cursor. `tooltip` is a string on the help icon next to the caption; `tooltipProps` is the SDS Tooltip API, for a subtitle, a custom body, or a different placement.
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**Example: ProteinStructureViewerWithOverlay**
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@@ -275,7 +275,8 @@ A `residueOverlay` paints arbitrary per-residue values over the structure, takin
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// so "no value here" reads differently from "a low value here".
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//
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// label captions the legend, readoutLabel names the slot that reports the value
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// under the cursor, and tooltip
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// under the cursor, and tooltip is the help title on the caption. tooltipProps
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// reaches the SDS Tooltip for a subtitle, a custom body, or placement.
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//
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// The structure below is crambin (PDB 1CRN), trimmed to the backbone atoms the
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// polymer cartoon traces. An overlay needs a chain long enough to see it on:
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@@ -500,6 +501,9 @@ function App() {
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max: 2.4,
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readoutLabel: "Activation",
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tooltip: "Max activation across all residues for this feature",
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tooltipProps: {
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subtitle: "Residues at or below min stay gray.",
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},
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values: RESIDUE_VALUES,
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}}
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/>
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@@ -1026,15 +1030,16 @@ The viewer spreads any remaining props onto its root div, so standard HTML attri
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### ResidueValueOverlay
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| Name | Type
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| -------------- |
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| `values` | `Map<number, number>`
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| `max` | `number`
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| `min` | `number`
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| `colorScale` | `ColorScale`
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| `label` | `string`
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| `tooltip` | `string`
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| `
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| Name | Type | Default | Description |
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| -------------- | ----------------------------------------- | -------------------- | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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| `values` | `Map<number, number>` | - (required) | 0-based residue index to value. Residues absent from the map read as `0`, so they render in the neutral gray rather than at the bottom of the scale. |
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| `max` | `number` | - (required) | The value mapped to the top of the color scale. |
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| `min` | `number` | `0` | Values at or below this render in a neutral gray rather than on the scale. |
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| `colorScale` | `ColorScale` | `PLASMA_COLOR_SCALE` | Scale used to color residues and to draw the legend. |
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| `label` | `string` | - | Legend caption, for example "Feature activation". |
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| `tooltip` | `string` | - | Help tooltip title on the legend caption. A string is enough for the common case; use `tooltipProps` for a subtitle, a custom body, or placement. Overrides `tooltipProps.title` when both are set. |
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| `tooltipProps` | `Partial<Omit<TooltipProps, "children">>` | - | Props forwarded to the SDS Tooltip on the legend caption. The trigger is the caption's help icon, so `children` is omitted. |
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| `readoutLabel` | `string` | `"Value"` | Label for the per-residue readout that replaces a stat slot on hover. |
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### StructureStat
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package/package.json
CHANGED
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{
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"name": "@czi-sds/mcp",
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"description": "The official MCP server for SDS",
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"version": "0.18.
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"version": "0.18.1",
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"main": "dist/stdio.js",
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"files": [
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"dist",
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"turndown": "^7.2.4",
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"typescript": "^5.9.2"
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},
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"gitHead": "
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"gitHead": "8fc0fe0e1562922e7e569f6e983968491d6db485"
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}
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