@cyanheads/zenodo-mcp-server 0.1.2 → 0.1.3

package/dist/mcp-server/tools/definitions/list-files.tool.js.map

@@ -1 +1 @@
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package/dist/mcp-server/tools/definitions/list-versions.tool.d.ts

@@ -60,7 +60,7 @@ export declare const listVersions: import("@cyanheads/mcp-ts-core").ToolDefiniti
 }, {
     readonly reason: "result_window_exceeded";
     readonly code: JsonRpcErrorCode.ValidationError;
-    readonly when: "page × size exceeds 10,000";
+    readonly when: "The page starts past the first 10,000 versions: (page − 1) × size is 10,000 or more, counting a size above 25 as 25";
     readonly recovery: "Zenodo pages only the first 10,000 versions of a series, and no series comes near that; call zenodo_list_versions with page 1 (total_versions and has_more show how far the series goes).";
 }, {
     readonly reason: "record_unavailable";

package/dist/mcp-server/tools/definitions/list-versions.tool.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"list-versions.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/list-versions.tool.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAUjE,eAAO,MAAM,YAAY;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EAsSvB,CAAC"}
+{"version":3,"file":"list-versions.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/list-versions.tool.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAQjE,eAAO,MAAM,YAAY;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EA8SvB,CAAC"}

package/dist/mcp-server/tools/definitions/list-versions.tool.js

@@ -8,10 +8,9 @@ import { tool, z } from '@cyanheads/mcp-ts-core';
 import { JsonRpcErrorCode } from '@cyanheads/mcp-ts-core/errors';
 import { parseRecordRef } from '../../../services/zenodo/identifiers.js';
 import { getZenodoService } from '../../../services/zenodo/zenodo-service.js';
+import { applyCap, hasMorePages, PAGE_SIZE_CAP, windowRejection } from '../paging.js';
 import { notOnZenodoMiss, recordMiss, TombstoneSchema } from '../record-miss.js';
 import { inline, quoteBlock } from '../render.js';
-/** Zenodo answers HTTP 400 when page × size passes this window. */
-const RESULT_WINDOW = 10_000;
 export const listVersions = tool('zenodo_list_versions', {
     title: 'List Zenodo record versions',
     description: "List every version of a Zenodo deposit's version series, newest first, with each version's record id, DOI, version label, publication date, file totals, and usage counts. Accepts any identifier zenodo_get_record accepts; a concept DOI and any single version's DOI list the same series. Use it to find the version a paper cited or the current release. A miss (an unknown id, a deleted record with its removal tombstone, restricted metadata, or a DOI not registered on Zenodo) returns found: false with guidance instead of an error.",
@@ -28,8 +27,14 @@ export const listVersions = tool('zenodo_list_versions', {
             .int()
             .min(1)
             .default(1)
-            .describe('Result page, starting at 1. page × size may not exceed 10,000.'),
-        size: z.number().int().min(1).max(25).default(25).describe('Versions per page (1–25).'),
+            .describe('Result page, starting at 1. Zenodo pages through only the first 10,000 versions, so the last reachable page is 10,000 ÷ size rounded up (400 at size 25).'),
+        size: z
+            .number()
+            .int()
+            .min(1)
+            .max(10_000)
+            .default(25)
+            .describe('Versions per page, at most 25 per call; larger values return 25.'),
     }),
     output: z.object({
         found: z.boolean().describe('True when the version series resolved.'),
@@ -59,7 +64,7 @@ export const listVersions = tool('zenodo_list_versions', {
             .optional()
             .describe('Record id of the newest version. Present when found, unless Zenodo cannot name it for a page past the end.'),
         page: z.number().describe('Page returned.'),
-        size: z.number().describe('Page size applied.'),
+        size: z.number().describe('Page size applied: size, or 25 when size asked for more.'),
         has_more: z.boolean().describe('True when another page of versions follows.'),
         next_page: z.number().optional().describe('The next page number, when has_more.'),
         versions: z
@@ -107,9 +112,12 @@ export const listVersions = tool('zenodo_list_versions', {
     enrichment: {
         truncated: z.boolean().describe('True when more versions follow this page.'),
         shown: z.number().describe('Versions returned on this page.'),
-        cap: z.number().describe('Page size applied.'),
+        cap: z.number().describe('Page size applied (at most 25).'),
         totalCount: z.number().describe('Number of versions in the series.'),
-        notice: z.string().optional().describe('Guidance on paging or a page past the end.'),
+        notice: z
+            .string()
+            .optional()
+            .describe('Guidance on paging, the 25-per-call size cap, or a page past the end.'),
     },
     errors: [
         {
@@ -121,7 +129,7 @@ export const listVersions = tool('zenodo_list_versions', {
         {
             reason: 'result_window_exceeded',
             code: JsonRpcErrorCode.ValidationError,
-            when: 'page × size exceeds 10,000',
+            when: 'The page starts past the first 10,000 versions: (page − 1) × size is 10,000 or more, counting a size above 25 as 25',
             recovery: 'Zenodo pages only the first 10,000 versions of a series, and no series comes near that; call zenodo_list_versions with page 1 (total_versions and has_more show how far the series goes).',
         },
         {
@@ -149,17 +157,18 @@ export const listVersions = tool('zenodo_list_versions', {
         },
     ],
     async handler(input, ctx) {
-        ctx.enrich({ truncated: false, shown: 0, cap: input.size, totalCount: 0 });
-        if (input.page * input.size > RESULT_WINDOW) {
-            throw ctx.fail('result_window_exceeded', `page ${input.page} × size ${input.size} is past the first ${RESULT_WINDOW.toLocaleString('en-US')} versions Zenodo pages through.`);
-        }
+        const { applied: size, capNote } = applyCap('size', input.size, PAGE_SIZE_CAP);
+        ctx.enrich({ truncated: false, shown: 0, cap: size, totalCount: 0 });
+        const pastWindow = windowRejection(input.page, size, 'versions', capNote);
+        if (pastWindow)
+            throw ctx.fail('result_window_exceeded', pastWindow);
         const ref = parseRecordRef(input.id);
         if (ref.kind === 'invalid') {
             throw ctx.fail('invalid_identifier', ref.message);
         }
         const service = getZenodoService();
         const inputKind = ref.inputKind;
-        const miss = { found: false, input_kind: inputKind, page: input.page, size: input.size };
+        const miss = { found: false, input_kind: inputKind, page: input.page, size };
         let recid;
         if (ref.kind === 'external_doi') {
             const resolution = await service.resolveDoi(ref.doi, ref.strippedDoi, ctx);
@@ -176,7 +185,7 @@ export const listVersions = tool('zenodo_list_versions', {
         else {
             recid = ref.recid;
         }
-        let lookup = await service.listVersions(recid, input.page, input.size, ctx);
+        let lookup = await service.listVersions(recid, input.page, size, ctx);
         if (lookup.status === 'not_found' || lookup.total === 0) {
             // A concept id 404s on /versions and a deleted recid answers 200 with no hits; the record GET classifies every miss.
             const record = await service.getRecord(recid, ctx);
@@ -185,7 +194,7 @@ export const listVersions = tool('zenodo_list_versions', {
             }
             if (record.record.recid !== recid) {
                 recid = record.record.recid;
-                lookup = await service.listVersions(recid, input.page, input.size, ctx);
+                lookup = await service.listVersions(recid, input.page, size, ctx);
             }
             if (lookup.status === 'not_found')
                 lookup = { status: 'ok', total: 0, hits: [] };
@@ -202,18 +211,18 @@ export const listVersions = tool('zenodo_list_versions', {
         const { hits, total } = lookup;
         const latestRecid = hits.find((h) => h.is_latest)?.recid ??
             (input.page === 1 ? hits[0]?.recid : await service.latestRecid(recid, ctx));
-        const hasMore = input.page * input.size < total;
+        const hasMore = hasMorePages(input.page, size, total);
         ctx.enrich({ shown: hits.length });
         ctx.enrich.total(total);
         if (hasMore) {
             ctx.enrich.truncated({
                 shown: hits.length,
-                cap: input.size,
-                guidance: `Showing ${hits.length} of ${total} versions; call again with page ${input.page + 1}.`,
+                cap: size,
+                guidance: `Showing ${hits.length} of ${total.toLocaleString('en-US')} versions${capNote ? ` (${capNote})` : ''}; call again with page ${input.page + 1}.`,
             });
         }
         else if (total > 0 && hits.length === 0) {
-            ctx.enrich.notice(`Page ${input.page} is past the last page (${Math.max(1, Math.ceil(total / input.size))}).`);
+            ctx.enrich.notice(`Page ${input.page} is past the last page (${Math.max(1, Math.ceil(total / size))}).`);
         }
         return {
             found: true,
@@ -223,7 +232,7 @@ export const listVersions = tool('zenodo_list_versions', {
             total_versions: total,
             ...(latestRecid ? { latest_recid: latestRecid } : {}),
             page: input.page,
-            size: input.size,
+            size,
             has_more: hasMore,
             ...(hasMore ? { next_page: input.page + 1 } : {}),
             versions: hits,

package/dist/mcp-server/tools/definitions/list-versions.tool.js.map

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package/dist/mcp-server/tools/definitions/lookup-vocabulary.tool.d.ts

@@ -28,6 +28,7 @@ export declare const lookupVocabulary: import("@cyanheads/mcp-ts-core").ToolDefi
     }>;
     query: z.ZodOptional<z.ZodString>;
     total: z.ZodNumber;
+    reachable: z.ZodNumber;
     page: z.ZodNumber;
     size: z.ZodNumber;
     has_more: z.ZodBoolean;
@@ -80,7 +81,7 @@ export declare const lookupVocabulary: import("@cyanheads/mcp-ts-core").ToolDefi
 }, {
     readonly reason: "result_window_exceeded";
     readonly code: JsonRpcErrorCode.ValidationError;
-    readonly when: "page × size exceeds 10,000";
+    readonly when: "The page starts past the first 10,000 entries: (page − 1) × size is 10,000 or more, counting a size above 25 as 25";
     readonly recovery: "Narrow the query and call zenodo_lookup_vocabulary again instead of paging past 10,000 entries.";
 }, {
     readonly reason: "rate_limited";

package/dist/mcp-server/tools/definitions/lookup-vocabulary.tool.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"lookup-vocabulary.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/lookup-vocabulary.tool.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AA0JjE,eAAO,MAAM,gBAAgB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EAwP3B,CAAC"}

package/dist/mcp-server/tools/definitions/lookup-vocabulary.tool.js

@@ -9,10 +9,10 @@ import { JsonRpcErrorCode } from '@cyanheads/mcp-ts-core/errors';
 import { parseFunderRef } from '../../../services/zenodo/identifiers.js';
 import { filterResourceTypes } from '../../../services/zenodo/resource-types.js';
 import { getZenodoService } from '../../../services/zenodo/zenodo-service.js';
+import { applyCap, hasMorePages, PAGE_SIZE_CAP, RESULT_WINDOW, reachableHits, windowRejection, } from '../paging.js';
 import { hasLineBreak, inline, quoteBlock } from '../render.js';
 import { blankToUndefined, enumPreprocess } from '../schema-helpers.js';
 const VOCABULARIES = ['communities', 'funders', 'awards', 'licenses', 'resource_types'];
-const RESULT_WINDOW = 10_000;
 /** What to try after a query matched nothing, per vocabulary. */
 const ZERO_HIT_ADVICE = {
     communities: "try a shorter name, a keyword from the community's title, or the project's acronym",
@@ -153,28 +153,40 @@ export const lookupVocabulary = tool('zenodo_lookup_vocabulary', {
         funder: z
             .preprocess(blankToUndefined, z.string().max(200).optional())
             .describe('awards only: scope grants to one funder, given as a ROR id (00k4n6c32), a ROR URL, or a Crossref Funder DOI (10.13039/100000002). Resolve a funder name to its ROR id with vocabulary funders first.'),
-        page: z.number().int().min(1).default(1).describe('Result page, starting at 1.'),
-        size: z.number().int().min(1).max(25).default(10).describe('Entries per page (1–25).'),
+        page: z
+            .number()
+            .int()
+            .min(1)
+            .default(1)
+            .describe('Result page, starting at 1. Only the first 10,000 entries of a list are reachable, so the last reachable page is 10,000 ÷ size rounded up (400 at size 25).'),
+        size: z
+            .number()
+            .int()
+            .min(1)
+            .max(10_000)
+            .default(10)
+            .describe('Entries per page, at most 25 per call; larger values return 25.'),
     }),
     output: z.object({
         vocabulary: z.enum(VOCABULARIES).describe('The vocabulary searched.'),
         query: z.string().optional().describe('The query as applied; absent when browsing.'),
         total: z.number().describe('Total entries matching the query.'),
+        reachable: z.number().describe('Entries reachable by paging: min(total, 10,000).'),
         page: z.number().describe('Page returned.'),
-        size: z.number().describe('Page size applied.'),
-        has_more: z.boolean().describe('True when more pages follow this one.'),
+        size: z.number().describe('Page size applied: size, or 25 when size asked for more.'),
+        has_more: z.boolean().describe('True when another page of reachable entries follows.'),
         next_page: z.number().optional().describe('The next page number, when has_more.'),
         entries: z.array(EntrySchema).describe('Matching entries for this page.'),
     }),
     enrichment: {
-        truncated: z.boolean().describe('True when more entries exist beyond this page.'),
+        truncated: z.boolean().describe('True when more reachable entries follow this page.'),
         shown: z.number().describe('Entries returned on this page.'),
-        cap: z.number().describe('Page size applied.'),
+        cap: z.number().describe('Page size applied (at most 25).'),
         totalCount: z.number().describe('Total entries matching the query.'),
         notice: z
             .string()
             .optional()
-            .describe('Guidance on empty results, ambiguous funders, or further pages.'),
+            .describe('Guidance on empty results, ambiguous funders, the 10,000-entry window, the 25-per-call size cap, or further pages.'),
     },
     errors: [
         {
@@ -192,7 +204,7 @@ export const lookupVocabulary = tool('zenodo_lookup_vocabulary', {
         {
             reason: 'result_window_exceeded',
             code: JsonRpcErrorCode.ValidationError,
-            when: 'page × size exceeds 10,000',
+            when: 'The page starts past the first 10,000 entries: (page − 1) × size is 10,000 or more, counting a size above 25 as 25',
             recovery: 'Narrow the query and call zenodo_lookup_vocabulary again instead of paging past 10,000 entries.',
         },
         {
@@ -205,19 +217,20 @@ export const lookupVocabulary = tool('zenodo_lookup_vocabulary', {
         },
     ],
     async handler(input, ctx) {
-        ctx.enrich({ truncated: false, shown: 0, cap: input.size, totalCount: 0 });
+        const { applied: size, capNote } = applyCap('size', input.size, PAGE_SIZE_CAP);
+        ctx.enrich({ truncated: false, shown: 0, cap: size, totalCount: 0 });
         if (input.funder && input.vocabulary !== 'awards') {
             throw ctx.fail('funder_only_for_awards', `funder applies only to vocabulary awards, not ${input.vocabulary}.`);
         }
-        if (input.page * input.size > RESULT_WINDOW) {
-            throw ctx.fail('result_window_exceeded', `page ${input.page} × size ${input.size} is past the first ${RESULT_WINDOW.toLocaleString('en-US')} entries.`);
-        }
+        const pastWindow = windowRejection(input.page, size, 'entries', capNote);
+        if (pastWindow)
+            throw ctx.fail('result_window_exceeded', pastWindow);
         let total;
         let entries;
         if (input.vocabulary === 'resource_types') {
             const matched = filterResourceTypes(input.query);
             total = matched.length;
-            entries = matched.slice((input.page - 1) * input.size, input.page * input.size).map((t) => ({
+            entries = matched.slice((input.page - 1) * size, input.page * size).map((t) => ({
                 filter_param: 'resource_type',
                 filter_value: t.id,
                 label: t.label,
@@ -236,12 +249,12 @@ export const lookupVocabulary = tool('zenodo_lookup_vocabulary', {
                 }
                 funderRor = funder.ror_id;
             }
-            const page = await service.searchVocabulary(input.vocabulary, { query: input.query, funderRor, page: input.page, size: input.size }, ctx);
+            const page = await service.searchVocabulary(input.vocabulary, { query: input.query, funderRor, page: input.page, size }, ctx);
             total = page.total;
             entries = toEntries(page);
         }
-        const reachable = Math.min(total, RESULT_WINDOW);
-        const hasMore = input.page * input.size < reachable;
+        const reachable = reachableHits(total);
+        const hasMore = hasMorePages(input.page, size, total);
         ctx.enrich({ shown: entries.length });
         ctx.enrich.total(total);
         const notice = [];
@@ -251,15 +264,18 @@ export const lookupVocabulary = tool('zenodo_lookup_vocabulary', {
                 : `No ${input.vocabulary} entries were returned.`);
         }
         else if (entries.length === 0) {
-            const last = Math.max(1, Math.ceil(reachable / input.size));
+            const last = Math.max(1, Math.ceil(reachable / size));
             notice.push(`Page ${input.page} is past the last page (${last}); call again with page ${last} or lower.`);
         }
         if (input.vocabulary === 'funders' && entries.length > 1) {
             notice.push('Several funders share names across countries; pick by country and ROR id.');
         }
+        if (total > RESULT_WINDOW) {
+            notice.push(`Only the first 10,000 of ${total.toLocaleString('en-US')} ${input.vocabulary} are reachable; narrow the list with query${input.vocabulary === 'awards' ? ' or funder' : ''}.`);
+        }
         if (hasMore) {
-            notice.push(`Showing ${entries.length} of ${total}; call again with page ${input.page + 1}.`);
-            ctx.enrich.truncated({ shown: entries.length, cap: input.size, guidance: notice.join(' ') });
+            notice.push(`Showing ${entries.length} of ${reachable.toLocaleString('en-US')}${capNote ? ` (${capNote})` : ''}; call again with page ${input.page + 1}.`);
+            ctx.enrich.truncated({ shown: entries.length, cap: size, guidance: notice.join(' ') });
         }
         else if (notice.length) {
             ctx.enrich.notice(notice.join(' '));
@@ -268,8 +284,9 @@ export const lookupVocabulary = tool('zenodo_lookup_vocabulary', {
             vocabulary: input.vocabulary,
             ...(input.query ? { query: input.query } : {}),
             total,
+            reachable,
             page: input.page,
-            size: input.size,
+            size,
             has_more: hasMore,
             ...(hasMore ? { next_page: input.page + 1 } : {}),
             entries,
@@ -278,7 +295,7 @@ export const lookupVocabulary = tool('zenodo_lookup_vocabulary', {
     format: (result) => {
         const lines = [
             `## Zenodo ${result.vocabulary}${result.query ? ` matching "${inline(result.query)}"` : ''}`,
-            `**Total:** ${result.total} | **Page:** ${result.page} | **Size:** ${result.size} | **Has more:** ${result.has_more}${result.next_page !== undefined ? ` | **Next page:** ${result.next_page}` : ''}`,
+            `**Total:** ${result.total} (${result.reachable} reachable) | **Page:** ${result.page} | **Size:** ${result.size} | **Has more:** ${result.has_more}${result.next_page !== undefined ? ` | **Next page:** ${result.next_page}` : ''}`,
         ];
         for (const e of result.entries) {
             lines.push('', `### ${inline(e.label)}`, `- **Filter:** ${e.filter_param} = \`${inline(e.filter_value)}\``);

package/dist/mcp-server/tools/definitions/lookup-vocabulary.tool.js.map

@@ -1 +1 @@
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package/dist/mcp-server/tools/definitions/read-file.tool.d.ts.map

@@ -1 +1 @@
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