@cyanheads/zenodo-mcp-server 0.1.1

package/dist/services/zenodo/text-preview.js

@@ -0,0 +1,151 @@
+/**
+ * @fileoverview Text-preview rules for file reads: which files are previewable,
+ * which are read and sniffed, the fence language hint, and the byte cut that keeps
+ * continuation windows on line or character boundaries.
+ * @module services/zenodo/text-preview
+ */
+const PREVIEWABLE_MIMETYPES = new Set([
+    'application/json',
+    'application/ld+json',
+    'application/geo+json',
+    'application/xml',
+    'application/x-yaml',
+    'application/yaml',
+    'application/x-ipynb+json',
+    'application/x-tex',
+    'application/x-sh',
+    'application/javascript',
+]);
+const PREVIEWABLE_EXTENSIONS = new Set('md markdown txt text csv tsv tab json jsonl ndjson geojson yaml yml xml cff bib ris rst tex py r rmd ipynb jl m sh sql toml ini cfg conf log html htm js ts c h cpp java go rs do sas'.split(' '));
+/** Lowercased extension of the last path segment, without the dot; `''` when none. */
+export function extensionOf(key) {
+    const name = key.slice(key.lastIndexOf('/') + 1);
+    const dot = name.lastIndexOf('.');
+    return dot > 0 ? name.slice(dot + 1).toLowerCase() : '';
+}
+/** The mimetype without parameters, lowercased; `''` when absent. */
+function baseMime(mimetype) {
+    return (mimetype ?? '').split(';')[0]?.trim().toLowerCase() ?? '';
+}
+/**
+ * True when a file is worth previewing as text: a `text/*` mimetype, one of the
+ * listed structured-text mimetypes, or a known text extension (CITATION.cff
+ * arrives as `application/octet-stream`, so the extension list is needed).
+ */
+export function isPreviewable(key, mimetype) {
+    const mime = baseMime(mimetype);
+    return (mime.startsWith('text/') ||
+        PREVIEWABLE_MIMETYPES.has(mime) ||
+        PREVIEWABLE_EXTENSIONS.has(extensionOf(key)));
+}
+/** The {@link PreviewMode} of a file or ZIP member. */
+export function previewMode(key, mimetype) {
+    if (isPreviewable(key, mimetype))
+        return 'text';
+    const mime = baseMime(mimetype);
+    return extensionOf(key) === '' && (mime === '' || mime === 'application/octet-stream')
+        ? 'sniff'
+        : 'binary';
+}
+/** Bytes at the head of a window that {@link looksLikeText} checks. */
+const SNIFF_BYTES = 4096;
+/**
+ * True when the head of a read window is UTF-8 text: its first {@link SNIFF_BYTES}
+ * bytes decode without error. A sequence cut by either edge of the window is
+ * allowed — at a positive offset the window may start mid-character, and the head
+ * ends wherever the sniff length falls. NUL bytes are checked separately
+ * ({@link cutPreview}).
+ */
+export function looksLikeText(bytes, atStart) {
+    let start = 0;
+    if (!atStart)
+        while (start < 3 && ((bytes[start] ?? 0) & 0xc0) === 0x80)
+            start++;
+    const head = bytes.subarray(start, SNIFF_BYTES);
+    try {
+        new TextDecoder('utf-8', { fatal: true }).decode(head.subarray(0, lastCompleteUtf8Boundary(head)));
+        return true;
+    }
+    catch {
+        return false;
+    }
+}
+/** True when the key names a ZIP archive by extension or mimetype. */
+export function isZip(key, mimetype) {
+    return extensionOf(key) === 'zip' || (mimetype ?? '').toLowerCase() === 'application/zip';
+}
+const LANGUAGE_HINTS = {
+    md: 'markdown',
+    markdown: 'markdown',
+    json: 'json',
+    jsonl: 'json',
+    ndjson: 'json',
+    geojson: 'json',
+    ipynb: 'json',
+    yaml: 'yaml',
+    yml: 'yaml',
+    cff: 'yaml',
+    xml: 'xml',
+    html: 'html',
+    htm: 'html',
+    csv: 'csv',
+    tsv: 'tsv',
+    py: 'python',
+    r: 'r',
+    rmd: 'markdown',
+    jl: 'julia',
+    sh: 'bash',
+    sql: 'sql',
+    toml: 'toml',
+    ini: 'ini',
+    js: 'javascript',
+    ts: 'typescript',
+    c: 'c',
+    h: 'c',
+    cpp: 'cpp',
+    java: 'java',
+    go: 'go',
+    rs: 'rust',
+    tex: 'latex',
+    bib: 'bibtex',
+    rst: 'rst',
+};
+/** Code-fence language hint for a file key; `''` when none applies. */
+export function languageHint(key) {
+    return LANGUAGE_HINTS[extensionOf(key)] ?? '';
+}
+/** Index just past the last complete UTF-8 sequence in `bytes`. */
+function lastCompleteUtf8Boundary(bytes) {
+    const end = bytes.length;
+    // Walk back over at most 3 continuation bytes to the lead byte.
+    for (let i = end - 1; i >= 0 && i >= end - 4; i--) {
+        const b = bytes[i];
+        if ((b & 0xc0) === 0x80)
+            continue;
+        const need = b >= 0xf0 ? 4 : b >= 0xe0 ? 3 : b >= 0xc0 ? 2 : 1;
+        return i + need <= end ? end : i;
+    }
+    return end;
+}
+/**
+ * Cuts a window of bytes for display. When more bytes remain past the window, the
+ * cut lands after the last `\n`, or — with no newline — after the last complete
+ * UTF-8 sequence. A NUL byte marks the buffer binary. A leading UTF-8 BOM is
+ * dropped from the text when the window starts at offset 0.
+ */
+export function cutPreview(bytes, options) {
+    if (bytes.includes(0))
+        return { binary: true, bytesKept: 0, replacementChars: 0, text: '' };
+    let keep = bytes.length;
+    if (options.moreRemains) {
+        const newline = bytes.lastIndexOf(0x0a);
+        keep = newline >= 0 ? newline + 1 : lastCompleteUtf8Boundary(bytes);
+    }
+    const kept = bytes.subarray(0, keep);
+    let text = new TextDecoder('utf-8', { fatal: false, ignoreBOM: true }).decode(kept);
+    if (options.atStart && text.startsWith('\uFEFF'))
+        text = text.slice(1);
+    const replacementChars = text.match(/\uFFFD/g)?.length ?? 0;
+    return { binary: false, bytesKept: keep, replacementChars, text };
+}
+//# sourceMappingURL=text-preview.js.map

package/dist/services/zenodo/text-preview.js.map

@@ -0,0 +1 @@
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package/dist/services/zenodo/types.d.ts

@@ -0,0 +1,517 @@
+/**
+ * @fileoverview Raw Zenodo (InvenioRDM) response shapes and the normalized domain
+ * types the tools consume. Raw fields are optional unless verified always present:
+ * upstream omits fields rather than sending null, and old records are sparse.
+ * @module services/zenodo/types
+ */
+/** Multilingual title/description map (`{ en: '…', de: '…' }`). */
+export type RawI18n = Record<string, string | undefined>;
+export interface RawIdentifier {
+    identifier?: string;
+    scheme?: string;
+}
+export interface RawVocabRef {
+    id?: string;
+    title?: RawI18n;
+}
+export interface RawPersonOrOrg {
+    family_name?: string;
+    given_name?: string;
+    identifiers?: RawIdentifier[];
+    name?: string;
+    type?: string;
+}
+export interface RawCreator {
+    affiliations?: {
+        id?: string;
+        name?: string;
+    }[];
+    person_or_org?: RawPersonOrOrg;
+    role?: RawVocabRef;
+}
+export interface RawFileEntry {
+    checksum?: string;
+    key?: string;
+    mimetype?: string;
+    size?: number;
+}
+export interface RawFiles {
+    count?: number;
+    enabled?: boolean;
+    entries?: Record<string, RawFileEntry>;
+    order?: string[];
+    total_bytes?: number;
+}
+export interface RawDoiPid {
+    identifier?: string;
+    provider?: string;
+}
+export interface RawCommunity {
+    id?: string;
+    metadata?: {
+        organizations?: {
+            id?: string;
+            name?: string;
+        }[];
+        title?: string;
+        type?: RawVocabRef;
+        website?: string;
+    };
+    slug?: string;
+}
+export interface RawFunding {
+    award?: {
+        acronym?: string;
+        id?: string;
+        identifiers?: RawIdentifier[];
+        number?: string;
+        program?: string;
+        title?: RawI18n;
+    };
+    funder?: {
+        id?: string;
+        name?: string;
+    };
+}
+export interface RawStatsBlock {
+    downloads?: number;
+    unique_downloads?: number;
+    unique_views?: number;
+    views?: number;
+}
+export interface RawRecord {
+    access?: {
+        embargo?: {
+            active?: boolean;
+            reason?: string | null;
+            until?: string;
+        };
+        files?: string;
+        record?: string;
+        status?: string;
+    };
+    custom_fields?: Record<string, unknown>;
+    files?: RawFiles;
+    id: string;
+    metadata?: {
+        additional_descriptions?: {
+            description?: string;
+            type?: RawVocabRef;
+        }[];
+        contributors?: RawCreator[];
+        creators?: RawCreator[];
+        description?: string;
+        funding?: RawFunding[];
+        publication_date?: string;
+        publisher?: string;
+        related_identifiers?: {
+            identifier?: string;
+            relation_type?: RawVocabRef;
+            resource_type?: RawVocabRef;
+            scheme?: string;
+        }[];
+        resource_type?: RawVocabRef;
+        rights?: {
+            id?: string;
+            props?: {
+                url?: string;
+            };
+            title?: RawI18n;
+        }[];
+        subjects?: {
+            subject?: string;
+        }[];
+        title?: string;
+        version?: string;
+    };
+    parent?: {
+        communities?: {
+            entries?: RawCommunity[];
+        };
+        id?: string;
+        pids?: {
+            doi?: RawDoiPid;
+        };
+    };
+    pids?: {
+        doi?: RawDoiPid;
+        oai?: {
+            identifier?: string;
+        };
+    };
+    revision_id?: number;
+    stats?: {
+        all_versions?: RawStatsBlock;
+        this_version?: RawStatsBlock;
+    };
+    versions?: {
+        index?: number;
+        is_latest?: boolean;
+    };
+}
+export interface RawTombstone {
+    citation_text?: string;
+    is_visible?: boolean;
+    note?: string;
+    removal_date?: string;
+    removal_reason?: {
+        id?: string;
+    };
+}
+export interface RawAggregationBucket {
+    doc_count?: number;
+    inner?: {
+        buckets?: RawAggregationBucket[];
+    };
+    key?: string | number;
+    label?: string;
+}
+export interface RawSearchResponse<T = RawRecord> {
+    aggregations?: Record<string, {
+        buckets?: RawAggregationBucket[];
+    }>;
+    hits?: {
+        hits?: T[];
+        total?: number;
+    };
+}
+export interface RawContainerEntry {
+    compressed_size?: number;
+    key?: string;
+    mimetype?: string;
+    size?: number;
+}
+export interface RawContainer {
+    directories?: unknown[];
+    entries?: RawContainerEntry[];
+    total?: number;
+    truncated?: boolean;
+}
+export interface RawFunder {
+    acronym?: string | null;
+    country?: string;
+    country_name?: string;
+    id?: string;
+    identifiers?: RawIdentifier[];
+    name?: string;
+    title?: RawI18n;
+}
+export interface RawAward {
+    acronym?: string;
+    end_date?: string;
+    funder?: {
+        id?: string;
+        name?: string;
+    };
+    id?: string;
+    identifiers?: RawIdentifier[];
+    number?: string;
+    program?: string;
+    start_date?: string;
+    title?: RawI18n;
+}
+export interface RawLicense {
+    id?: string;
+    props?: {
+        osi_approved?: string;
+        url?: string;
+    };
+    tags?: string[];
+    title?: RawI18n;
+}
+/** One top-level file in a record's manifest. */
+export interface FileEntry {
+    download_url: string;
+    key: string;
+    md5?: string;
+    mimetype?: string;
+    size?: number;
+}
+export interface Affiliation {
+    name?: string;
+    ror?: string;
+}
+export interface Person {
+    affiliations: Affiliation[];
+    name: string;
+    orcid?: string;
+    role?: string;
+    type?: string;
+}
+export interface FundingEntry {
+    award_acronym?: string;
+    award_doi?: string;
+    award_id?: string;
+    award_number?: string;
+    award_program?: string;
+    award_title?: string;
+    award_url?: string;
+    funder_id?: string;
+    funder_name?: string;
+}
+export interface RelatedIdentifier {
+    identifier: string;
+    relation?: string;
+    resource_type?: string;
+    scheme?: string;
+}
+export interface RecordAccess {
+    embargo_active: boolean;
+    embargo_reason?: string;
+    embargo_until?: string;
+    files?: string;
+    record?: string;
+    status: string;
+}
+export interface UsageCounts {
+    downloads?: number;
+    views?: number;
+}
+/**
+ * A fully normalized record: complete lists and the complete file manifest, with
+ * descriptions converted to plain text. Tools apply their own display caps.
+ */
+export interface ZenodoRecord {
+    access: RecordAccess;
+    additional_descriptions: {
+        text: string;
+        type?: string;
+    }[];
+    code_repository?: string;
+    communities: {
+        slug: string;
+        title?: string;
+    }[];
+    concept_doi?: string;
+    concept_recid?: string;
+    contributors: Person[];
+    creators: Person[];
+    description?: string;
+    doi?: string;
+    doi_provider?: string;
+    files: {
+        count?: number;
+        enabled: boolean;
+        entries: FileEntry[];
+        total_bytes?: number;
+    };
+    funding: FundingEntry[];
+    keywords: string[];
+    oai_id?: string;
+    publication_date?: string;
+    publisher?: string;
+    recid: string;
+    related_identifiers: RelatedIdentifier[];
+    resource_type?: {
+        id: string;
+        title?: string;
+    };
+    revision?: number;
+    rights: {
+        id?: string;
+        title: string;
+        url?: string;
+    }[];
+    stats?: {
+        all_versions: UsageCounts;
+        this_version: UsageCounts;
+    };
+    title: string;
+    version?: string;
+    versions: {
+        index?: number;
+        is_latest?: boolean;
+    };
+}
+/** A deleted record's tombstone — the only data a removed record still serves. */
+export interface Tombstone {
+    citation_text?: string;
+    note?: string;
+    removal_date?: string;
+    removal_reason?: string;
+}
+/** Outcome of a record GET. A miss is a result, not an error. */
+export type RecordLookup = {
+    record: ZenodoRecord;
+    status: 'found';
+} | {
+    status: 'not_found';
+} | {
+    status: 'restricted';
+} | {
+    status: 'deleted';
+    tombstone: Tombstone;
+};
+/** One search hit, file manifest stripped. */
+export interface RecordSummary {
+    access: {
+        embargo_until?: string;
+        files?: string;
+        status: string;
+    };
+    communities: string[];
+    concept_doi?: string;
+    concept_recid?: string;
+    creator_count: number;
+    creators: {
+        name: string;
+        orcid?: string;
+    }[];
+    description_snippet?: string;
+    doi?: string;
+    doi_provider?: string;
+    downloads?: number;
+    file_count?: number;
+    is_latest?: boolean;
+    license_ids: string[];
+    publication_date?: string;
+    recid: string;
+    resource_type?: {
+        id: string;
+        title?: string;
+    };
+    title: string;
+    total_bytes?: number;
+    version?: string;
+    version_index?: number;
+    views?: number;
+    zenodo_url: string;
+}
+export interface FacetBucket {
+    count: number;
+    id: string;
+    label: string;
+}
+export interface SearchFacets {
+    access_status: FacetBucket[];
+    file_type: FacetBucket[];
+    publication_year: {
+        count: number;
+        year: string;
+    }[];
+    resource_type: (FacetBucket & {
+        subtypes?: FacetBucket[];
+    })[];
+    subject: {
+        count: number;
+        label: string;
+    }[];
+}
+export interface SearchPage {
+    facets: SearchFacets;
+    hits: RecordSummary[];
+    total: number;
+}
+/** One version in a version series. */
+export interface VersionSummary {
+    doi?: string;
+    downloads?: number;
+    file_count?: number;
+    index?: number;
+    is_latest?: boolean;
+    publication_date?: string;
+    recid: string;
+    title: string;
+    total_bytes?: number;
+    version?: string;
+    views?: number;
+}
+export type VersionsLookup = {
+    /** Concept record id of the series, from the first hit's `parent`. */
+    concept_recid?: string;
+    /** Concept DOI of the series, from the first hit's `parent`. */
+    concept_doi?: string;
+    hits: VersionSummary[];
+    status: 'ok';
+    total: number;
+}
+/** `/versions` answered 404, 403, or 410: the id names no listable series. */
+ | {
+    status: 'not_found';
+};
+export interface ContainerMember {
+    compressed_size?: number;
+    mimetype?: string;
+    path: string;
+    size?: number;
+}
+/** A ZIP listing as Zenodo serves it (capped at 1,000 nodes upstream). */
+export interface ContainerListing {
+    directory_count: number;
+    members: ContainerMember[];
+    total?: number;
+    upstream_truncated: boolean;
+}
+export type ContainerLookup = {
+    listing: ContainerListing;
+    status: 'ok';
+} | {
+    status: 'not_found';
+};
+/** Result of a byte-capped content read. */
+export interface ContentRead {
+    bytes: Uint8Array;
+    /** Total file size from `Content-Range`, when upstream sent one. */
+    fileSize?: number;
+    /** True when bytes remain past the returned window. */
+    moreRemains: boolean;
+    status: 'ok' | 'forbidden' | 'not_found' | 'range_not_satisfiable';
+}
+export interface CommunityEntry {
+    community_type?: string;
+    organizations: string[];
+    slug: string;
+    title?: string;
+    uuid: string;
+    website?: string;
+}
+export interface FunderEntry {
+    acronym?: string;
+    country?: string;
+    country_name?: string;
+    funder_doi?: string;
+    name?: string;
+    ror_id: string;
+}
+export interface AwardEntry {
+    acronym?: string;
+    award_doi?: string;
+    award_url?: string;
+    end_date?: string;
+    funder_id?: string;
+    funder_name?: string;
+    id: string;
+    number?: string;
+    program?: string;
+    start_date?: string;
+    title?: string;
+}
+export interface LicenseEntry {
+    id: string;
+    osi_approved?: boolean;
+    tags: string[];
+    title?: string;
+    url?: string;
+}
+/** Vocabularies served by the upstream API (resource types are a static table). */
+export type RemoteVocabulary = 'communities' | 'funders' | 'awards' | 'licenses';
+export type VocabularyPage = {
+    entries: CommunityEntry[];
+    total: number;
+    vocabulary: 'communities';
+} | {
+    entries: FunderEntry[];
+    total: number;
+    vocabulary: 'funders';
+} | {
+    entries: AwardEntry[];
+    total: number;
+    vocabulary: 'awards';
+} | {
+    entries: LicenseEntry[];
+    total: number;
+    vocabulary: 'licenses';
+};
+/** Citation formats the export endpoint serves. */
+export type CitationStyle = 'bibtex' | 'csl-json' | 'apa' | 'chicago-author-date' | 'harvard-cite-them-right' | 'ieee' | 'modern-language-association' | 'nature';
+//# sourceMappingURL=types.d.ts.map

package/dist/services/zenodo/types.d.ts.map

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