@cyanheads/zenodo-mcp-server 0.1.1 → 0.1.3

package/dist/mcp-server/tools/definitions/lookup-vocabulary.tool.js.map

@@ -1 +1 @@
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package/dist/mcp-server/tools/definitions/read-file.tool.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"read-file.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/read-file.tool.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAyCjE,eAAO,MAAM,QAAQ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EAgcnB,CAAC"}
+{"version":3,"file":"read-file.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/read-file.tool.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAgDjE,eAAO,MAAM,QAAQ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EAubnB,CAAC"}

package/dist/mcp-server/tools/definitions/read-file.tool.js

@@ -10,24 +10,26 @@ import { JsonRpcErrorCode } from '@cyanheads/mcp-ts-core/errors';
 import { downloadUrl, hasDotSegment, parseRecordRef, recordUrl, } from '../../../services/zenodo/identifiers.js';
 import { cutPreview, isZip, languageHint, looksLikeText, previewMode, } from '../../../services/zenodo/text-preview.js';
 import { getZenodoService } from '../../../services/zenodo/zenodo-service.js';
+import { applyCap } from '../paging.js';
 import { fence, inline } from '../render.js';
 import { blankToUndefined } from '../schema-helpers.js';
 const STATUSES = ['text', 'not_text', 'restricted', 'empty'];
-/** The largest max_bytes a call accepts. */
+/** Bytes one read covers: a larger max_bytes is served at this many. */
 const MAX_READ_BYTES = 65_536;
 /**
- * Guidance when a ZIP member read stops at max_bytes. A member cannot be continued
- * at an offset, so the next step depends on whether one larger read covers it.
+ * Guidance when a ZIP member read stops at the applied max_bytes. A member cannot
+ * be continued at an offset, so the next step depends on whether one larger read
+ * covers it.
  */
-function memberTruncationNotice(end, size, maxBytes) {
-    const shown = `Showing bytes 0–${end} of ${size ?? 'an unknown total'}`;
+function memberTruncationNotice(end, size, maxBytes, capNote) {
+    const shown = `Showing bytes 0–${end} of ${size?.toLocaleString('en-US') ?? 'an unknown total'}${capNote ? ` (${capNote})` : ''}`;
     if (size !== undefined && size <= MAX_READ_BYTES) {
         return `${shown}; call zenodo_read_file again with max_bytes ${size} to read the whole member.`;
     }
     if (size === undefined && maxBytes < MAX_READ_BYTES) {
         return `${shown}; call zenodo_read_file again with max_bytes ${MAX_READ_BYTES} to read more of this member, and download the archive from download_url if that still stops short.`;
     }
-    return `${shown}; the member is larger than the ${MAX_READ_BYTES}-byte read cap, so download the archive from download_url for the rest${maxBytes < MAX_READ_BYTES ? ` (max_bytes ${MAX_READ_BYTES} shows more of its start)` : ''}.`;
+    return `${shown}; the member is larger than the ${MAX_READ_BYTES.toLocaleString('en-US')}-byte read cap, so download the archive from download_url for the rest${maxBytes < MAX_READ_BYTES ? ` (max_bytes ${MAX_READ_BYTES} shows more of its start)` : ''}.`;
 }
 export const readFile = tool('zenodo_read_file', {
     title: 'Read a Zenodo file excerpt',
@@ -58,9 +60,8 @@ export const readFile = tool('zenodo_read_file', {
             .number()
             .int()
             .min(256)
-            .max(MAX_READ_BYTES)
             .default(16_384)
-            .describe('Maximum bytes to read (256–65536).'),
+            .describe('Maximum bytes to read (256 or more), at most 65536 per call; larger values return 65536.'),
     }),
     output: z.object({
         recid: z.string().describe('Record id read from (the latest version for a concept id).'),
@@ -112,7 +113,7 @@ export const readFile = tool('zenodo_read_file', {
         notice: z
             .string()
             .optional()
-            .describe('Why no text was returned, or how to read the rest of the file.'),
+            .describe('Why no text was returned, or how to read the rest of the file, naming the 65,536-byte cap when it held back bytes.'),
     },
     errors: [
         {
@@ -187,28 +188,29 @@ export const readFile = tool('zenodo_read_file', {
         },
     ],
     async handler(input, ctx) {
+        const { applied: maxBytes, capNote } = applyCap('max_bytes', input.max_bytes, MAX_READ_BYTES);
         const ref = parseRecordRef(input.id);
         if (ref.kind === 'invalid') {
-            throw ctx.fail('invalid_identifier', ref.message, ctx.recoveryFor('invalid_identifier'));
+            throw ctx.fail('invalid_identifier', ref.message);
         }
         const service = getZenodoService();
         let record;
         if (ref.kind === 'external_doi') {
             const resolution = await service.resolveDoi(ref.doi, ref.strippedDoi, ctx);
             if (resolution.status === 'not_on_zenodo') {
-                throw ctx.fail('record_not_found', `DOI ${ref.strippedDoi ?? ref.doi} is not registered to a Zenodo record.`, ctx.recoveryFor('record_not_found'));
+                throw ctx.fail('record_not_found', `DOI ${ref.strippedDoi ?? ref.doi} is not registered to a Zenodo record.`);
             }
             record = resolution.record;
         }
         else {
             const lookup = await service.getRecord(ref.recid, ctx);
             if (lookup.status === 'deleted') {
-                throw ctx.fail('record_deleted', `Record ${ref.recid} was deleted from Zenodo; only its tombstone remains.`, ctx.recoveryFor('record_deleted'));
+                throw ctx.fail('record_deleted', `Record ${ref.recid} was deleted from Zenodo; only its tombstone remains.`);
             }
             if (lookup.status !== 'found') {
                 throw ctx.fail('record_not_found', lookup.status === 'restricted'
                     ? `Record ${ref.recid} exists but its metadata is restricted and cannot be read anonymously.`
-                    : `No Zenodo record has id ${ref.recid}.`, ctx.recoveryFor('record_not_found'));
+                    : `No Zenodo record has id ${ref.recid}.`);
             }
             record = lookup.record;
         }
@@ -247,7 +249,7 @@ export const readFile = tool('zenodo_read_file', {
         if (!entry) {
             throw ctx.fail('file_not_found', files.enabled
                 ? `Record ${recid} has no file with key "${inline(input.key)}".`
-                : `Record ${recid} is a metadata-only deposit with no files.`, ctx.recoveryFor('file_not_found'));
+                : `Record ${recid} is a metadata-only deposit with no files.`);
         }
         let meta;
         let mode;
@@ -255,13 +257,13 @@ export const readFile = tool('zenodo_read_file', {
         const notPreviewable = () => withoutText('not_text', `${displayName} is not a previewable text file (${meta.mimetype ?? 'unknown type'}); download it from download_url.`, meta);
         if (member) {
             if (!isZip(entry.key, entry.mimetype)) {
-                throw ctx.fail('not_an_archive', `"${inline(input.key)}" is not a .zip file, so archive_member cannot be read from it.`, ctx.recoveryFor('not_an_archive'));
+                throw ctx.fail('not_an_archive', `"${inline(input.key)}" is not a .zip file, so archive_member cannot be read from it.`);
             }
             if (input.offset_bytes > 0) {
-                throw ctx.fail('member_offset_unsupported', 'Zenodo serves ZIP members only from their first byte; offset_bytes must be 0 with archive_member.', ctx.recoveryFor('member_offset_unsupported'));
+                throw ctx.fail('member_offset_unsupported', 'Zenodo serves ZIP members only from their first byte; offset_bytes must be 0 with archive_member.');
             }
             if (hasDotSegment(member)) {
-                throw ctx.fail('member_not_found', `"${displayName}" has a "." or ".." path segment, so it names no member of the .zip "${inline(input.key)}".`, ctx.recoveryFor('member_not_found'));
+                throw ctx.fail('member_not_found', `"${displayName}" has a "." or ".." path segment, so it names no member of the .zip "${inline(input.key)}".`);
             }
             const container = await service.getContainer(recid, entry.key, ctx);
             const listed = container.status === 'ok'
@@ -276,9 +278,9 @@ export const readFile = tool('zenodo_read_file', {
             mode = previewMode(member, meta.mimetype);
             if (mode === 'binary')
                 return notPreviewable();
-            read = await service.readMember(recid, entry.key, member, input.max_bytes, ctx);
+            read = await service.readMember(recid, entry.key, member, maxBytes, ctx);
             if (read.status === 'not_found') {
-                throw ctx.fail('member_not_found', `The .zip "${inline(input.key)}" in record ${recid} has no member "${displayName}".`, ctx.recoveryFor('member_not_found'));
+                throw ctx.fail('member_not_found', `The .zip "${inline(input.key)}" in record ${recid} has no member "${displayName}".`);
             }
         }
         else {
@@ -287,23 +289,23 @@ export const readFile = tool('zenodo_read_file', {
                 ...(entry.size !== undefined ? { size: entry.size } : {}),
             };
             if (meta.size !== undefined && input.offset_bytes >= meta.size && meta.size > 0) {
-                throw ctx.fail('offset_out_of_range', `offset_bytes ${input.offset_bytes} is at or past the end of ${displayName} (${meta.size} bytes).`, ctx.recoveryFor('offset_out_of_range'));
+                throw ctx.fail('offset_out_of_range', `offset_bytes ${input.offset_bytes} is at or past the end of ${displayName} (${meta.size.toLocaleString('en-US')} bytes).`);
             }
             if (meta.size === 0) {
                 if (input.offset_bytes > 0) {
-                    throw ctx.fail('offset_out_of_range', `${displayName} is empty, so offset_bytes ${input.offset_bytes} is past its end.`, ctx.recoveryFor('offset_out_of_range'));
+                    throw ctx.fail('offset_out_of_range', `${displayName} is empty, so offset_bytes ${input.offset_bytes} is past its end.`);
                 }
                 return withoutText('empty', `${displayName} is empty.`, meta);
             }
             mode = previewMode(entry.key, meta.mimetype);
             if (mode === 'binary')
                 return notPreviewable();
-            read = await service.readContent(recid, entry.key, input.offset_bytes, input.max_bytes, ctx);
+            read = await service.readContent(recid, entry.key, input.offset_bytes, maxBytes, ctx);
             if (read.status === 'range_not_satisfiable') {
-                throw ctx.fail('offset_out_of_range', `offset_bytes ${input.offset_bytes} is past the end of ${displayName}.`, ctx.recoveryFor('offset_out_of_range'));
+                throw ctx.fail('offset_out_of_range', `offset_bytes ${input.offset_bytes} is past the end of ${displayName}.`);
             }
             if (read.status === 'not_found') {
-                throw ctx.fail('file_not_found', `Zenodo has no content for "${displayName}" in record ${recid}.`, ctx.recoveryFor('file_not_found'));
+                throw ctx.fail('file_not_found', `Zenodo has no content for "${displayName}" in record ${recid}.`);
             }
             if (meta.size === undefined && read.fileSize !== undefined)
                 meta.size = read.fileSize;
@@ -315,7 +317,7 @@ export const readFile = tool('zenodo_read_file', {
         if (read.bytes.length === 0) {
             // No bytes past a positive offset means the offset is past the end, not an empty file.
             if (input.offset_bytes > 0) {
-                throw ctx.fail('offset_out_of_range', `offset_bytes ${input.offset_bytes} is past the end of ${displayName}.`, ctx.recoveryFor('offset_out_of_range'));
+                throw ctx.fail('offset_out_of_range', `offset_bytes ${input.offset_bytes} is past the end of ${displayName}.`);
             }
             return withoutText('empty', `${displayName} is empty.`, meta);
         }
@@ -334,8 +336,8 @@ export const readFile = tool('zenodo_read_file', {
         if (hasMore) {
             const end = nextOffset - 1;
             ctx.enrich.notice(member
-                ? memberTruncationNotice(end, meta.size, input.max_bytes)
-                : `Showing bytes ${input.offset_bytes}–${end} of ${meta.size ?? 'an unknown total'}; call zenodo_read_file again with offset_bytes ${nextOffset}.`);
+                ? memberTruncationNotice(end, meta.size, maxBytes, capNote)
+                : `Showing bytes ${input.offset_bytes}–${end} of ${meta.size?.toLocaleString('en-US') ?? 'an unknown total'}${capNote ? ` (${capNote})` : ''}; call zenodo_read_file again with offset_bytes ${nextOffset}.`);
         }
         return {
             ...described('text', meta),

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package/dist/mcp-server/tools/definitions/search-records.tool.d.ts

@@ -117,8 +117,8 @@ export declare const searchRecords: import("@cyanheads/mcp-ts-core").ToolDefinit
 }, {
     readonly reason: "query_syntax";
     readonly code: JsonRpcErrorCode.ValidationError;
-    readonly when: "The query has an unpaired unescaped / outside quotes";
-    readonly recovery: "Escape the slash as \\/ or wrap that term in double quotes, then call zenodo_search_records again.";
+    readonly when: "The query holds something Zenodo cannot run: a regular expression with no closing / (an unescaped / outside double quotes) or with a \" inside /…/ left open; a \" inside a word whose phrase never closes (with a filter other than community and all_versions set, only when the query still fails once that phrase is closed at its end) or closes past a bracket the query needs; a range bound ending in a backslash, as one holding an escaped space, ] or } does; an unescaped ! with nothing after it; or a boost, fuzziness, or proximity value it cannot convert. Or a filter other than community and all_versions is set and the query is not valid search syntax, which Zenodo would match as plain text with every filter dropped";
+    readonly recovery: "Fix the syntax the message names, then call zenodo_search_records again: double-quote or backslash-escape any / [ ] { } ~ ^ : or ! meant as plain text (\"[CMIP6]\", \\[CMIP6\\], 10.5281\\/zenodo.1, climate\\!) and any \" inside a regular expression or a word (12\\\" vinyl), write phrases in double quotes rather than single, drop a doubled or dangling operator (AND AND, or one with nothing after it inside parentheses, as in (climate AND)), give a field: prefix a value, close a range as [a TO b] and double-quote a bound that holds a space, ] or } ([a TO \"b]\"]), and give a boost or fuzziness one decimal number and a phrase proximity a whole number (^2, ~0.5, \"x y\"~2).";
 }, {
     readonly reason: "query_failed";
     readonly code: JsonRpcErrorCode.ServiceUnavailable;
@@ -151,7 +151,7 @@ export declare const searchRecords: import("@cyanheads/mcp-ts-core").ToolDefinit
 }, {
     readonly reason: "result_window_exceeded";
     readonly code: JsonRpcErrorCode.ValidationError;
-    readonly when: "page × size exceeds 10,000";
+    readonly when: "The page starts past the first 10,000 matches: (page − 1) × size is 10,000 or more, counting a size above 25 as 25";
     readonly recovery: "Zenodo serves only the first 10,000 matches; add filters or a published_from/published_to range to zenodo_search_records instead of paging deeper.";
 }, {
     readonly reason: "rate_limited";

package/dist/mcp-server/tools/definitions/search-records.tool.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"search-records.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/search-records.tool.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AA2SjE,eAAO,MAAM,aAAa;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EAsfxB,CAAC"}