@cyanheads/pubmed-mcp-server 2.9.9 → 2.10.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/AGENTS.md +2 -2
- package/CLAUDE.md +2 -2
- package/README.md +19 -4
- package/dist/index.js +3 -2
- package/dist/index.js.map +1 -1
- package/dist/mcp-server/tools/definitions/_text.d.ts +22 -0
- package/dist/mcp-server/tools/definitions/_text.d.ts.map +1 -0
- package/dist/mcp-server/tools/definitions/_text.js +32 -0
- package/dist/mcp-server/tools/definitions/_text.js.map +1 -0
- package/dist/mcp-server/tools/definitions/fetch-fulltext.tool.d.ts +35 -0
- package/dist/mcp-server/tools/definitions/fetch-fulltext.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/fetch-fulltext.tool.js +634 -123
- package/dist/mcp-server/tools/definitions/fetch-fulltext.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/pubmed-europepmc-fetch.tool.d.ts +87 -0
- package/dist/mcp-server/tools/definitions/pubmed-europepmc-fetch.tool.d.ts.map +1 -0
- package/dist/mcp-server/tools/definitions/pubmed-europepmc-fetch.tool.js +195 -0
- package/dist/mcp-server/tools/definitions/pubmed-europepmc-fetch.tool.js.map +1 -0
- package/dist/mcp-server/tools/definitions/pubmed-europepmc-search.tool.d.ts +1 -0
- package/dist/mcp-server/tools/definitions/pubmed-europepmc-search.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/pubmed-europepmc-search.tool.js +29 -8
- package/dist/mcp-server/tools/definitions/pubmed-europepmc-search.tool.js.map +1 -1
- package/dist/services/europe-pmc/api-client.d.ts +14 -1
- package/dist/services/europe-pmc/api-client.d.ts.map +1 -1
- package/dist/services/europe-pmc/api-client.js +21 -25
- package/dist/services/europe-pmc/api-client.js.map +1 -1
- package/dist/services/europe-pmc/europe-pmc-service.d.ts +21 -7
- package/dist/services/europe-pmc/europe-pmc-service.d.ts.map +1 -1
- package/dist/services/europe-pmc/europe-pmc-service.js +39 -6
- package/dist/services/europe-pmc/europe-pmc-service.js.map +1 -1
- package/dist/services/europe-pmc/types.d.ts +9 -0
- package/dist/services/europe-pmc/types.d.ts.map +1 -1
- package/dist/services/openalex/api-client.d.ts +15 -1
- package/dist/services/openalex/api-client.d.ts.map +1 -1
- package/dist/services/openalex/api-client.js +21 -24
- package/dist/services/openalex/api-client.js.map +1 -1
- package/package.json +1 -1
- package/server.json +3 -3
|
@@ -18,10 +18,19 @@ import { getEuropePmcService } from '../../../services/europe-pmc/europe-pmc-ser
|
|
|
18
18
|
import { EUROPEPMC_ALL_SOURCES, EUROPEPMC_DEFAULT_SOURCES, } from '../../../services/europe-pmc/types.js';
|
|
19
19
|
import { toDisplayText } from '../../../services/ncbi/parsing/text-helpers.js';
|
|
20
20
|
import { conceptMeta, EDAM_DATABASE_SEARCH, EDAM_PUBMED_ID, SCHEMA_SEARCH_ACTION, } from './_concepts.js';
|
|
21
|
+
import { sliceCodeUnits } from './_text.js';
|
|
21
22
|
const SourceEnum = z.enum(['MED', 'PMC', 'PPR', 'PAT', 'AGR']);
|
|
23
|
+
/**
|
|
24
|
+
* Character budget for `abstractSnippet`. Keeps a search page bounded no matter
|
|
25
|
+
* how many hits carry long abstracts; `pubmed_europepmc_fetch` serves the
|
|
26
|
+
* complete text for the records a caller actually wants. A cut that would split
|
|
27
|
+
* a surrogate pair backs off a code unit, so a snippet can come back one
|
|
28
|
+
* character under the budget. (#93)
|
|
29
|
+
*/
|
|
30
|
+
const ABSTRACT_SNIPPET_LIMIT = 400;
|
|
22
31
|
// ─── Tool Definition ─────────────────────────────────────────────────────────
|
|
23
32
|
export const pubmedEuropepmcSearchTool = tool('pubmed_europepmc_search', {
|
|
24
|
-
description: 'Search Europe PMC, a broad open-access biomedical corpus. Surfaces preprints (`source: PPR`), patents (`source: PAT`), Agricola (`source: AGR`), plus everything in PubMed (`MED`) and PMC. Use when additional coverage is needed — preprints and EPMC-only OA records are the typical recovery. Paginate via `cursorMark`. Defaults to `MED`, `PMC`, and `PPR`; pass `sources` to include `PAT` / `AGR`.',
|
|
33
|
+
description: 'Search Europe PMC, a broad open-access biomedical corpus. Surfaces preprints (`source: PPR`), patents (`source: PAT`), Agricola (`source: AGR`), plus everything in PubMed (`MED`) and PMC. Use when additional coverage is needed — preprints and EPMC-only OA records are the typical recovery. Paginate via `cursorMark`. Defaults to `MED`, `PMC`, and `PPR`; pass `sources` to include `PAT` / `AGR`. Abstracts arrive as a bounded `abstractSnippet` with `abstractTruncated` marking the cut ones — pass a hit’s `source` and `epmcId` to `pubmed_europepmc_fetch` for the complete abstract.',
|
|
25
34
|
annotations: { readOnlyHint: true, openWorldHint: true },
|
|
26
35
|
_meta: conceptMeta([SCHEMA_SEARCH_ACTION, EDAM_DATABASE_SEARCH, EDAM_PUBMED_ID]),
|
|
27
36
|
sourceUrl: 'https://github.com/cyanheads/pubmed-mcp-server/blob/main/src/mcp-server/tools/definitions/pubmed-europepmc-search.tool.ts',
|
|
@@ -38,7 +47,7 @@ export const pubmedEuropepmcSearchTool = tool('pubmed_europepmc_search', {
|
|
|
38
47
|
query: z
|
|
39
48
|
.string()
|
|
40
49
|
.min(1)
|
|
41
|
-
.describe('Europe PMC search query. Supports field tokens like `AUTH:"<name>"`, `JOURNAL:"<title>"`, `TITLE:"<words>"`, `PUB_YEAR:[2020 TO 2024]`, `DOI:"..."`, `EXT_ID
|
|
50
|
+
.describe('Europe PMC search query. Supports field tokens like `AUTH:"<name>"`, `JOURNAL:"<title>"`, `TITLE:"<words>"`, `PUB_YEAR:[2020 TO 2024]`, `DOI:"..."`, `EXT_ID:<pmid> AND SRC:MED`, `PMCID:PMC<digits>`. Identifier tokens combined with `AND SRC:` must be unquoted — the quoted form matches nothing. Free text is matched broadly across abstract/title/keywords.'),
|
|
42
51
|
pageSize: z
|
|
43
52
|
.number()
|
|
44
53
|
.int()
|
|
@@ -71,7 +80,7 @@ export const pubmedEuropepmcSearchTool = tool('pubmed_europepmc_search', {
|
|
|
71
80
|
source: SourceEnum.describe('Europe PMC source — `MED` (PubMed), `PMC` (PubMed Central), `PPR` (preprint), `PAT` (patent), `AGR` (Agricola)'),
|
|
72
81
|
epmcId: z
|
|
73
82
|
.string()
|
|
74
|
-
.describe("Europe PMC's internal record id
|
|
83
|
+
.describe("Europe PMC's internal record id. Pass it with this hit's `source` to `pubmed_europepmc_fetch` for the complete record. Europe PMC's `fullTextXML` is keyed on `pmcId`, not on this id, so records without a PMC counterpart have no full text to fetch."),
|
|
75
84
|
title: z.string().optional().describe('Article title'),
|
|
76
85
|
authors: z.string().optional().describe('Formatted author string'),
|
|
77
86
|
journal: z.string().optional().describe('Journal title'),
|
|
@@ -94,7 +103,11 @@ export const pubmedEuropepmcSearchTool = tool('pubmed_europepmc_search', {
|
|
|
94
103
|
abstractSnippet: z
|
|
95
104
|
.string()
|
|
96
105
|
.optional()
|
|
97
|
-
.describe(
|
|
106
|
+
.describe(`First ${ABSTRACT_SNIPPET_LIMIT} characters of the abstract as display-ready plain text — JATS/HTML markup stripped and HTML entities decoded — when \`resultType: "core"\` is requested, with a trailing … appended when the abstract was cut. Check \`abstractTruncated\` before treating it as the whole abstract.`),
|
|
107
|
+
abstractTruncated: z
|
|
108
|
+
.boolean()
|
|
109
|
+
.optional()
|
|
110
|
+
.describe('Whether `abstractSnippet` was cut short of the full abstract. Retrieve the complete text with `pubmed_europepmc_fetch` using this record’s `source` and `epmcId`. Present whenever `abstractSnippet` is; omitted when Europe PMC carries no abstract.'),
|
|
98
111
|
citedByCount: z.number().optional().describe('Citation count reported by Europe PMC'),
|
|
99
112
|
epmcUrl: z.string().describe('Europe PMC article URL'),
|
|
100
113
|
})
|
|
@@ -151,7 +164,8 @@ export const pubmedEuropepmcSearchTool = tool('pubmed_europepmc_search', {
|
|
|
151
164
|
// un-decoded entities, and soft hyphens (no XML parser runs on it). Clean it
|
|
152
165
|
// to display-ready plain text before truncating, so the snippet budget is
|
|
153
166
|
// spent on text and soft hyphens don't corrupt downstream token matching. (#74)
|
|
154
|
-
const
|
|
167
|
+
const abstract = h.abstractText ? toDisplayText(h.abstractText) : '';
|
|
168
|
+
const truncated = abstract.length > ABSTRACT_SNIPPET_LIMIT;
|
|
155
169
|
return {
|
|
156
170
|
source: h.source,
|
|
157
171
|
epmcId: h.id,
|
|
@@ -165,8 +179,11 @@ export const pubmedEuropepmcSearchTool = tool('pubmed_europepmc_search', {
|
|
|
165
179
|
...(h.doi && { doi: h.doi }),
|
|
166
180
|
...(h.isOpenAccess !== undefined && { isOpenAccess: h.isOpenAccess === 'Y' }),
|
|
167
181
|
...(h.inPMC !== undefined && { hasFullTextXml: h.inPMC === 'Y' }),
|
|
168
|
-
...(
|
|
169
|
-
abstractSnippet:
|
|
182
|
+
...(abstract && {
|
|
183
|
+
abstractSnippet: truncated
|
|
184
|
+
? `${sliceCodeUnits(abstract, ABSTRACT_SNIPPET_LIMIT)}…`
|
|
185
|
+
: abstract,
|
|
186
|
+
abstractTruncated: truncated,
|
|
170
187
|
}),
|
|
171
188
|
...(typeof h.citedByCount === 'number' && { citedByCount: h.citedByCount }),
|
|
172
189
|
epmcUrl: `https://europepmc.org/article/${h.source}/${h.id}`,
|
|
@@ -241,8 +258,12 @@ export const pubmedEuropepmcSearchTool = tool('pubmed_europepmc_search', {
|
|
|
241
258
|
if (typeof h.citedByCount === 'number')
|
|
242
259
|
lines.push(`**Cited by:** ${h.citedByCount}`);
|
|
243
260
|
lines.push(`**URL:** ${h.epmcUrl}`);
|
|
244
|
-
if (h.abstractSnippet)
|
|
261
|
+
if (h.abstractSnippet) {
|
|
245
262
|
lines.push(`\n${h.abstractSnippet}`);
|
|
263
|
+
if (h.abstractTruncated) {
|
|
264
|
+
lines.push(`_Abstract truncated at ${ABSTRACT_SNIPPET_LIMIT} characters — call \`pubmed_europepmc_fetch\` with this record's \`source\` and \`epmcId\` for the complete text._`);
|
|
265
|
+
}
|
|
266
|
+
}
|
|
246
267
|
}
|
|
247
268
|
}
|
|
248
269
|
return [{ type: 'text', text: lines.join('\n') }];
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"pubmed-europepmc-search.tool.js","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/pubmed-europepmc-search.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;GAYG;AAEH,OAAO,EAAE,IAAI,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AACjE,OAAO,EAAE,wBAAwB,EAAE,MAAM,+BAA+B,CAAC;AACzE,OAAO,EAAE,mBAAmB,EAAE,MAAM,6CAA6C,CAAC;AAClF,OAAO,EACL,qBAAqB,EACrB,yBAAyB,GAE1B,MAAM,gCAAgC,CAAC;AACxC,OAAO,EAAE,aAAa,EAAE,MAAM,yCAAyC,CAAC;AACxE,OAAO,EACL,WAAW,EACX,oBAAoB,EACpB,cAAc,EACd,oBAAoB,GACrB,MAAM,gBAAgB,CAAC;
|
|
1
|
+
{"version":3,"file":"pubmed-europepmc-search.tool.js","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/pubmed-europepmc-search.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;GAYG;AAEH,OAAO,EAAE,IAAI,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AACjE,OAAO,EAAE,wBAAwB,EAAE,MAAM,+BAA+B,CAAC;AACzE,OAAO,EAAE,mBAAmB,EAAE,MAAM,6CAA6C,CAAC;AAClF,OAAO,EACL,qBAAqB,EACrB,yBAAyB,GAE1B,MAAM,gCAAgC,CAAC;AACxC,OAAO,EAAE,aAAa,EAAE,MAAM,yCAAyC,CAAC;AACxE,OAAO,EACL,WAAW,EACX,oBAAoB,EACpB,cAAc,EACd,oBAAoB,GACrB,MAAM,gBAAgB,CAAC;AACxB,OAAO,EAAE,cAAc,EAAE,MAAM,YAAY,CAAC;AAE5C,MAAM,UAAU,GAAG,CAAC,CAAC,IAAI,CAAC,CAAC,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,CAAC,CAAC,CAAC;AAE/D;;;;;;GAMG;AACH,MAAM,sBAAsB,GAAG,GAAG,CAAC;AAEnC,gFAAgF;AAEhF,MAAM,CAAC,MAAM,yBAAyB,GAAG,IAAI,CAAC,yBAAyB,EAAE;IACvE,WAAW,EACT,skBAAskB;IACxkB,WAAW,EAAE,EAAE,YAAY,EAAE,IAAI,EAAE,aAAa,EAAE,IAAI,EAAE;IACxD,KAAK,EAAE,WAAW,CAAC,CAAC,oBAAoB,EAAE,oBAAoB,EAAE,cAAc,CAAC,CAAC;IAChF,SAAS,EACP,2HAA2H;IAE7H,MAAM,EAAE;QACN,GAAG,wBAAwB;QAC3B;YACE,MAAM,EAAE,oBAAoB;YAC5B,IAAI,EAAE,gBAAgB,CAAC,kBAAkB;YACzC,IAAI,EAAE,6DAA6D;YACnE,QAAQ,EAAE,mFAAmF;SAC9F;KACO;IAEV,KAAK,EAAE,CAAC,CAAC,MAAM,CAAC;QACd,KAAK,EAAE,CAAC;aACL,MAAM,EAAE;aACR,GAAG,CAAC,CAAC,CAAC;aACN,QAAQ,CACP,oWAAoW,CACrW;QACH,QAAQ,EAAE,CAAC;aACR,MAAM,EAAE;aACR,GAAG,EAAE;aACL,GAAG,CAAC,CAAC,CAAC;aACN,GAAG,CAAC,GAAG,CAAC;aACR,OAAO,CAAC,EAAE,CAAC;aACX,QAAQ,CAAC,yCAAyC,CAAC;QACtD,UAAU,EAAE,CAAC;aACV,MAAM,EAAE;aACR,OAAO,CAAC,GAAG,CAAC;aACZ,QAAQ,CACP,8HAA8H,CAC/H;QACH,OAAO,EAAE,CAAC;aACP,KAAK,CAAC,UAAU,CAAC;aACjB,GAAG,CAAC,CAAC,CAAC;aACN,QAAQ,EAAE;aACV,QAAQ,CACP,gDAAgD,yBAAyB,CAAC,IAAI,CAAC,IAAI,CAAC,mGAAmG,qBAAqB,CAAC,IAAI,CAAC,IAAI,CAAC,GAAG,CAC3N;QACH,UAAU,EAAE,CAAC;aACV,IAAI,CAAC,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;aACtB,OAAO,CAAC,MAAM,CAAC;aACf,QAAQ,CACP,qGAAqG,CACtG;QACH,IAAI,EAAE,CAAC;aACJ,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,CACP,2gBAA2gB,CAC5gB;KACJ,CAAC;IAEF,MAAM,EAAE,CAAC,CAAC,MAAM,CAAC;QACf,IAAI,EAAE,CAAC;aACJ,KAAK,CACJ,CAAC;aACE,MAAM,CAAC;YACN,MAAM,EAAE,UAAU,CAAC,QAAQ,CACzB,gHAAgH,CACjH;YACD,MAAM,EAAE,CAAC;iBACN,MAAM,EAAE;iBACR,QAAQ,CACP,yPAAyP,CAC1P;YACH,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,eAAe,CAAC;YACtD,OAAO,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,yBAAyB,CAAC;YAClE,OAAO,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,eAAe,CAAC;YACxD,OAAO,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,kBAAkB,CAAC;YAC3D,oBAAoB,EAAE,CAAC;iBACpB,MAAM,EAAE;iBACR,QAAQ,EAAE;iBACV,QAAQ,CAAC,yCAAyC,CAAC;YACtD,IAAI,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,6BAA6B,CAAC;YACnE,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,4BAA4B,CAAC;YACnE,GAAG,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,kBAAkB,CAAC;YACvD,YAAY,EAAE,CAAC;iBACZ,OAAO,EAAE;iBACT,QAAQ,EAAE;iBACV,QAAQ,CAAC,gDAAgD,CAAC;YAC7D,cAAc,EAAE,CAAC;iBACd,OAAO,EAAE;iBACT,QAAQ,EAAE;iBACV,QAAQ,CACP,iMAAiM,CAClM;YACH,eAAe,EAAE,CAAC;iBACf,MAAM,EAAE;iBACR,QAAQ,EAAE;iBACV,QAAQ,CACP,SAAS,sBAAsB,uRAAuR,CACvT;YACH,iBAAiB,EAAE,CAAC;iBACjB,OAAO,EAAE;iBACT,QAAQ,EAAE;iBACV,QAAQ,CACP,uPAAuP,CACxP;YACH,YAAY,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,uCAAuC,CAAC;YACrF,OAAO,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,wBAAwB,CAAC;SACvD,CAAC;aACD,QAAQ,CAAC,iDAAiD,CAAC,CAC/D;aACA,QAAQ,CAAC,8DAA8D,CAAC;QAC3E,UAAU,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,yDAAyD,CAAC;QAC1F,cAAc,EAAE,CAAC;aACd,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,CAAC,kFAAkF,CAAC;QAC/F,SAAS,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,gDAAgD,CAAC;KACjF,CAAC;IAEF,qFAAqF;IACrF,oFAAoF;IACpF,sFAAsF;IACtF,UAAU,EAAE;QACV,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,6CAA6C,CAAC;QACzE,UAAU,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,yCAAyC,CAAC;QAC1E,cAAc,EAAE,CAAC;aACd,KAAK,CAAC,UAAU,CAAC;aACjB,QAAQ,CAAC,2DAA2D,CAAC;QACxE,MAAM,EAAE,CAAC;aACN,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,CAAC,6DAA6D,CAAC;KAC3E;IAED,oFAAoF;IACpF,qFAAqF;IACrF,iBAAiB,EAAE;QACjB,KAAK,EAAE,EAAE,KAAK,EAAE,iBAAiB,EAAE;QACnC,UAAU,EAAE,EAAE,KAAK,EAAE,YAAY,EAAE;QACnC,cAAc,EAAE;YACd,MAAM,EAAE,CAAC,OAAO,EAAE,EAAE,CAAC,gBAAgB,OAAO,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE;SAC1D;KACF;IAED,KAAK,CAAC,OAAO,CAAC,KAAK,EAAE,GAAG;QACtB,GAAG,CAAC,GAAG,CAAC,IAAI,CAAC,mCAAmC,EAAE,EAAE,KAAK,EAAE,KAAK,CAAC,KAAK,EAAE,CAAC,CAAC;QAC1E,MAAM,IAAI,GAAG,mBAAmB,EAAE,CAAC;QACnC,IAAI,CAAC,IAAI,EAAE,CAAC;YACV,MAAM,GAAG,CAAC,IAAI,CACZ,oBAAoB,EACpB,mFAAmF,EACnF,EAAE,GAAG,GAAG,CAAC,WAAW,CAAC,oBAAoB,CAAC,EAAE,CAC7C,CAAC;QACJ,CAAC;QAED,MAAM,OAAO,GAAG,CAAC,KAAK,CAAC,OAAO,IAAI,yBAAyB,CAA+B,CAAC;QAC3F,MAAM,MAAM,GAAG,MAAM,IAAI,CAAC,MAAM,CAAC;YAC/B,KAAK,EAAE,KAAK,CAAC,KAAK;YAClB,UAAU,EAAE,KAAK,CAAC,UAAU;YAC5B,QAAQ,EAAE,KAAK,CAAC,QAAQ;YACxB,UAAU,EAAE,KAAK,CAAC,UAAU;YAC5B,OAAO;YACP,GAAG,CAAC,KAAK,CAAC,IAAI,IAAI,EAAE,IAAI,EAAE,KAAK,CAAC,IAAI,EAAE,CAAC;YACvC,GAAG,CAAC,GAAG,CAAC,MAAM,IAAI,EAAE,MAAM,EAAE,GAAG,CAAC,MAAM,EAAE,CAAC;SAC1C,CAAC,CAAC;QAEH,MAAM,IAAI,GAAG,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE;YACjC,4EAA4E;YAC5E,6EAA6E;YAC7E,0EAA0E;YAC1E,gFAAgF;YAChF,MAAM,QAAQ,GAAG,CAAC,CAAC,YAAY,CAAC,CAAC,CAAC,aAAa,CAAC,CAAC,CAAC,YAAY,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC;YACrE,MAAM,SAAS,GAAG,QAAQ,CAAC,MAAM,GAAG,sBAAsB,CAAC;YAC3D,OAAO;gBACL,MAAM,EAAE,CAAC,CAAC,MAA+C;gBACzD,MAAM,EAAE,CAAC,CAAC,EAAE;gBACZ,GAAG,CAAC,CAAC,CAAC,KAAK,IAAI,EAAE,KAAK,EAAE,CAAC,CAAC,KAAK,EAAE,CAAC;gBAClC,GAAG,CAAC,CAAC,CAAC,YAAY,IAAI,EAAE,OAAO,EAAE,CAAC,CAAC,YAAY,EAAE,CAAC;gBAClD,GAAG,CAAC,CAAC,CAAC,YAAY,IAAI,EAAE,OAAO,EAAE,CAAC,CAAC,YAAY,EAAE,CAAC;gBAClD,GAAG,CAAC,CAAC,CAAC,OAAO,IAAI,EAAE,OAAO,EAAE,CAAC,CAAC,OAAO,EAAE,CAAC;gBACxC,GAAG,CAAC,CAAC,CAAC,oBAAoB,IAAI,EAAE,oBAAoB,EAAE,CAAC,CAAC,oBAAoB,EAAE,CAAC;gBAC/E,GAAG,CAAC,CAAC,CAAC,IAAI,IAAI,EAAE,IAAI,EAAE,CAAC,CAAC,IAAI,EAAE,CAAC;gBAC/B,GAAG,CAAC,CAAC,CAAC,KAAK,IAAI,EAAE,KAAK,EAAE,CAAC,CAAC,KAAK,EAAE,CAAC;gBAClC,GAAG,CAAC,CAAC,CAAC,GAAG,IAAI,EAAE,GAAG,EAAE,CAAC,CAAC,GAAG,EAAE,CAAC;gBAC5B,GAAG,CAAC,CAAC,CAAC,YAAY,KAAK,SAAS,IAAI,EAAE,YAAY,EAAE,CAAC,CAAC,YAAY,KAAK,GAAG,EAAE,CAAC;gBAC7E,GAAG,CAAC,CAAC,CAAC,KAAK,KAAK,SAAS,IAAI,EAAE,cAAc,EAAE,CAAC,CAAC,KAAK,KAAK,GAAG,EAAE,CAAC;gBACjE,GAAG,CAAC,QAAQ,IAAI;oBACd,eAAe,EAAE,SAAS;wBACxB,CAAC,CAAC,GAAG,cAAc,CAAC,QAAQ,EAAE,sBAAsB,CAAC,GAAG;wBACxD,CAAC,CAAC,QAAQ;oBACZ,iBAAiB,EAAE,SAAS;iBAC7B,CAAC;gBACF,GAAG,CAAC,OAAO,CAAC,CAAC,YAAY,KAAK,QAAQ,IAAI,EAAE,YAAY,EAAE,CAAC,CAAC,YAAY,EAAE,CAAC;gBAC3E,OAAO,EAAE,iCAAiC,CAAC,CAAC,MAAM,IAAI,CAAC,CAAC,EAAE,EAAE;aAC7D,CAAC;QACJ,CAAC,CAAC,CAAC;QAEH,oEAAoE;QACpE,4EAA4E;QAC5E,8EAA8E;QAC9E,0EAA0E;QAC1E,4EAA4E;QAC5E,MAAM,SAAS,GAAG,KAAK,CAAC,IAAI,EAAE,IAAI,EAAE,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,EAAE,WAAW,EAAE,CAAC;QACpE,MAAM,SAAS,GAAG,OAAO,CAAC,MAAM,GAAG,CAAC,IAAI,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,KAAK,KAAK,CAAC,CAAC;QAC1E,IAAI,MAA0B,CAAC;QAC/B,IAAI,MAAM,CAAC,QAAQ,KAAK,CAAC,EAAE,CAAC;YAC1B,MAAM;gBACJ,yIAAyI,CAAC;QAC9I,CAAC;aAAM,IAAI,SAAS,KAAK,WAAW,IAAI,SAAS,EAAE,CAAC;YAClD,MAAM;gBACJ,oSAAoS,CAAC;QACzS,CAAC;QAED,GAAG,CAAC,GAAG,CAAC,IAAI,CAAC,mCAAmC,EAAE;YAChD,QAAQ,EAAE,MAAM,CAAC,QAAQ;YACzB,YAAY,EAAE,IAAI,CAAC,MAAM;YACzB,WAAW,EAAE,CAAC,CAAC,MAAM,CAAC,cAAc;SACrC,CAAC,CAAC;QAEH,GAAG,CAAC,MAAM,CAAC;YACT,KAAK,EAAE,MAAM,CAAC,KAAK;YACnB,cAAc,EAAE,CAAC,GAAG,OAAO,CAA8C;SAC1E,CAAC,CAAC;QACH,GAAG,CAAC,MAAM,CAAC,KAAK,CAAC,MAAM,CAAC,QAAQ,CAAC,CAAC;QAClC,IAAI,MAAM;YAAE,GAAG,CAAC,MAAM,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC;QAEtC,OAAO;YACL,IAAI;YACJ,UAAU,EAAE,MAAM,CAAC,UAAU,IAAI,GAAG;YACpC,GAAG,CAAC,MAAM,CAAC,cAAc,IAAI,EAAE,cAAc,EAAE,MAAM,CAAC,cAAc,EAAE,CAAC;YACvE,SAAS,EAAE,sCAAsC,kBAAkB,CAAC,KAAK,CAAC,KAAK,CAAC,EAAE;SACnF,CAAC;IACJ,CAAC;IAED,MAAM,EAAE,CAAC,MAAM,EAAE,EAAE;QACjB,MAAM,KAAK,GAAG;YACZ,8BAA8B;YAC9B,iBAAiB,MAAM,CAAC,IAAI,CAAC,MAAM,EAAE;YACrC,eAAe,MAAM,CAAC,UAAU,GAAG,MAAM,CAAC,cAAc,CAAC,CAAC,CAAC,QAAQ,MAAM,CAAC,cAAc,gBAAgB,CAAC,CAAC,CAAC,eAAe,EAAE;YAC5H,mBAAmB,MAAM,CAAC,SAAS,EAAE;SACtC,CAAC;QAEF,IAAI,MAAM,CAAC,IAAI,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;YAC3B,KAAK,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC;YACzB,KAAK,MAAM,CAAC,IAAI,MAAM,CAAC,IAAI,EAAE,CAAC;gBAC5B,KAAK,CAAC,IAAI,CAAC,UAAU,CAAC,CAAC,KAAK,IAAI,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC;gBAC5C,KAAK,CAAC,IAAI,CAAC,eAAe,CAAC,CAAC,MAAM,mBAAmB,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC;gBACjE,IAAI,CAAC,CAAC,OAAO;oBAAE,KAAK,CAAC,IAAI,CAAC,gBAAgB,CAAC,CAAC,OAAO,EAAE,CAAC,CAAC;gBACvD,IAAI,CAAC,CAAC,OAAO;oBAAE,KAAK,CAAC,IAAI,CAAC,gBAAgB,CAAC,CAAC,OAAO,EAAE,CAAC,CAAC;gBACvD,IAAI,CAAC,CAAC,oBAAoB;oBAAE,KAAK,CAAC,IAAI,CAAC,kBAAkB,CAAC,CAAC,oBAAoB,EAAE,CAAC,CAAC;gBACnF,IAAI,CAAC,CAAC,OAAO;oBAAE,KAAK,CAAC,IAAI,CAAC,aAAa,CAAC,CAAC,OAAO,EAAE,CAAC,CAAC;gBACpD,IAAI,CAAC,CAAC,IAAI;oBAAE,KAAK,CAAC,IAAI,CAAC,aAAa,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC;gBAC9C,IAAI,CAAC,CAAC,KAAK;oBAAE,KAAK,CAAC,IAAI,CAAC,cAAc,CAAC,CAAC,KAAK,EAAE,CAAC,CAAC;gBACjD,IAAI,CAAC,CAAC,GAAG;oBAAE,KAAK,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC,GAAG,EAAE,CAAC,CAAC;gBAC3C,IAAI,CAAC,CAAC,YAAY,KAAK,SAAS;oBAC9B,KAAK,CAAC,IAAI,CAAC,oBAAoB,CAAC,CAAC,YAAY,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC;gBAClE,IAAI,CAAC,CAAC,cAAc,KAAK,SAAS,EAAE,CAAC;oBACnC,KAAK,CAAC,IAAI,CAAC,8BAA8B,CAAC,CAAC,cAAc,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC;gBAC9E,CAAC;gBACD,IAAI,OAAO,CAAC,CAAC,YAAY,KAAK,QAAQ;oBAAE,KAAK,CAAC,IAAI,CAAC,iBAAiB,CAAC,CAAC,YAAY,EAAE,CAAC,CAAC;gBACtF,KAAK,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC,OAAO,EAAE,CAAC,CAAC;gBACpC,IAAI,CAAC,CAAC,eAAe,EAAE,CAAC;oBACtB,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,eAAe,EAAE,CAAC,CAAC;oBACrC,IAAI,CAAC,CAAC,iBAAiB,EAAE,CAAC;wBACxB,KAAK,CAAC,IAAI,CACR,0BAA0B,sBAAsB,oHAAoH,CACrK,CAAC;oBACJ,CAAC;gBACH,CAAC;YACH,CAAC;QACH,CAAC;QAED,OAAO,CAAC,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IACpD,CAAC;CACF,CAAC,CAAC"}
|
|
@@ -20,7 +20,15 @@ export type EuropePmcFullTextFetchResult = {
|
|
|
20
20
|
kind: 'not-available';
|
|
21
21
|
reason: string;
|
|
22
22
|
};
|
|
23
|
-
/**
|
|
23
|
+
/**
|
|
24
|
+
* Low-level HTTP client for Europe PMC. Single-attempt — retries upstream.
|
|
25
|
+
*
|
|
26
|
+
* Every method here resolves only on HTTP 2xx: `fetchWithTimeout` throws a
|
|
27
|
+
* status-mapped `McpError` for any non-2xx rather than returning the failing
|
|
28
|
+
* `Response`, so a `!response.ok` check after the call can never run. A status
|
|
29
|
+
* that needs graceful handling is converted in the catch block by inspecting
|
|
30
|
+
* `error.code` — see `fullTextXml`'s 404 → `not-available`. (#90)
|
|
31
|
+
*/
|
|
24
32
|
export declare class EuropePmcApiClient {
|
|
25
33
|
private readonly config;
|
|
26
34
|
constructor(config: EuropePmcApiClientConfig);
|
|
@@ -34,6 +42,11 @@ export declare class EuropePmcApiClient {
|
|
|
34
42
|
* Fetch the JATS full-text XML for an EPMC record by its internal id.
|
|
35
43
|
* Returns `{ kind: 'not-available' }` for 404 — EPMC has the record but
|
|
36
44
|
* doesn't publish a full-text XML for it (very common for preprints).
|
|
45
|
+
*
|
|
46
|
+
* `fetchWithTimeout` throws a status-mapped `McpError` on any non-2xx rather
|
|
47
|
+
* than resolving with the `Response` (`expectedStatuses` only lowers the log
|
|
48
|
+
* severity), so the 404 arrives here as `McpError(NotFound)` and must be
|
|
49
|
+
* converted in the catch block. Every other failure keeps throwing. (#90)
|
|
37
50
|
*/
|
|
38
51
|
fullTextXml(epmcId: string, signal?: AbortSignal): Promise<EuropePmcFullTextFetchResult>;
|
|
39
52
|
/**
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"api-client.d.ts","sourceRoot":"","sources":["../../../src/services/europe-pmc/api-client.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;
|
|
1
|
+
{"version":3,"file":"api-client.d.ts","sourceRoot":"","sources":["../../../src/services/europe-pmc/api-client.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAMH,OAAO,EAAsB,KAAK,qBAAqB,EAAE,MAAM,YAAY,CAAC;AAI5E,MAAM,WAAW,wBAAwB;IACvC,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,SAAS,EAAE,MAAM,CAAC;CACnB;AAED;;;GAGG;AACH,MAAM,MAAM,4BAA4B,GACpC;IAAE,IAAI,EAAE,OAAO,CAAC;IAAC,GAAG,EAAE,MAAM,CAAA;CAAE,GAC9B;IAAE,IAAI,EAAE,eAAe,CAAC;IAAC,MAAM,EAAE,MAAM,CAAA;CAAE,CAAC;AAE9C;;;;;;;;GAQG;AACH,qBAAa,kBAAkB;IACjB,OAAO,CAAC,QAAQ,CAAC,MAAM;IAAnC,YAA6B,MAAM,EAAE,wBAAwB,EAAI;IAEjE;;;;OAIG;IACG,MAAM,CAAC,MAAM,EAAE,qBAAqB,GAAG,OAAO,CAAC,MAAM,CAAC,CAwB3D;IAED;;;;;;;;;OASG;IACG,WAAW,CAAC,MAAM,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,WAAW,GAAG,OAAO,CAAC,4BAA4B,CAAC,CA4C7F;IAED;;;;OAIG;IACH,SAAS,CAAC,IAAI,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,WAAW,GAAG,OAAO,CAAC,MAAM,CAAC,CAG7F;IAED;;;;OAIG;IACH,UAAU,CAAC,IAAI,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,WAAW,GAAG,OAAO,CAAC,MAAM,CAAC,CAG9F;IAED,iFAAiF;YACnE,cAAc;IA2B5B,OAAO,CAAC,cAAc;IActB;;;;OAIG;IACH,OAAO,CAAC,gBAAgB;CAMzB"}
|
|
@@ -4,12 +4,20 @@
|
|
|
4
4
|
* fullTextXML calls. Retry logic lives in `EuropePmcService`.
|
|
5
5
|
* @module src/services/europe-pmc/api-client
|
|
6
6
|
*/
|
|
7
|
-
import { McpError, serviceUnavailable } from '@cyanheads/mcp-ts-core/errors';
|
|
8
|
-
import { fetchWithTimeout,
|
|
7
|
+
import { JsonRpcErrorCode, McpError, serviceUnavailable } from '@cyanheads/mcp-ts-core/errors';
|
|
8
|
+
import { fetchWithTimeout, logger, requestContextService } from '@cyanheads/mcp-ts-core/utils';
|
|
9
9
|
import { recoveryFor } from '../../services/error-contracts.js';
|
|
10
10
|
import { EUROPEPMC_API_BASE } from './types.js';
|
|
11
11
|
const USER_AGENT = 'pubmed-mcp-server (+https://github.com/cyanheads/pubmed-mcp-server)';
|
|
12
|
-
/**
|
|
12
|
+
/**
|
|
13
|
+
* Low-level HTTP client for Europe PMC. Single-attempt — retries upstream.
|
|
14
|
+
*
|
|
15
|
+
* Every method here resolves only on HTTP 2xx: `fetchWithTimeout` throws a
|
|
16
|
+
* status-mapped `McpError` for any non-2xx rather than returning the failing
|
|
17
|
+
* `Response`, so a `!response.ok` check after the call can never run. A status
|
|
18
|
+
* that needs graceful handling is converted in the catch block by inspecting
|
|
19
|
+
* `error.code` — see `fullTextXml`'s 404 → `not-available`. (#90)
|
|
20
|
+
*/
|
|
13
21
|
export class EuropePmcApiClient {
|
|
14
22
|
config;
|
|
15
23
|
constructor(config) {
|
|
@@ -39,18 +47,17 @@ export class EuropePmcApiClient {
|
|
|
39
47
|
const msg = error instanceof Error ? error.message : String(error);
|
|
40
48
|
throw serviceUnavailable(`Europe PMC search request failed: ${msg}`, { reason: 'europepmc_unreachable', ...recoveryFor('europepmc_unreachable') }, { cause: error });
|
|
41
49
|
}
|
|
42
|
-
if (!response.ok) {
|
|
43
|
-
throw await httpErrorFromResponse(response, {
|
|
44
|
-
service: 'Europe PMC',
|
|
45
|
-
data: { url, reason: 'europepmc_unreachable', ...recoveryFor('europepmc_unreachable') },
|
|
46
|
-
});
|
|
47
|
-
}
|
|
48
50
|
return response.text();
|
|
49
51
|
}
|
|
50
52
|
/**
|
|
51
53
|
* Fetch the JATS full-text XML for an EPMC record by its internal id.
|
|
52
54
|
* Returns `{ kind: 'not-available' }` for 404 — EPMC has the record but
|
|
53
55
|
* doesn't publish a full-text XML for it (very common for preprints).
|
|
56
|
+
*
|
|
57
|
+
* `fetchWithTimeout` throws a status-mapped `McpError` on any non-2xx rather
|
|
58
|
+
* than resolving with the `Response` (`expectedStatuses` only lowers the log
|
|
59
|
+
* severity), so the 404 arrives here as `McpError(NotFound)` and must be
|
|
60
|
+
* converted in the catch block. Every other failure keeps throwing. (#90)
|
|
54
61
|
*/
|
|
55
62
|
async fullTextXml(epmcId, signal) {
|
|
56
63
|
const url = `${EUROPEPMC_API_BASE}/${encodeURIComponent(epmcId)}/fullTextXML`;
|
|
@@ -70,20 +77,15 @@ export class EuropePmcApiClient {
|
|
|
70
77
|
});
|
|
71
78
|
}
|
|
72
79
|
catch (error) {
|
|
73
|
-
if (error instanceof McpError)
|
|
80
|
+
if (error instanceof McpError) {
|
|
81
|
+
if (error.code === JsonRpcErrorCode.NotFound) {
|
|
82
|
+
return { kind: 'not-available', reason: 'EPMC has no fullTextXML for this record' };
|
|
83
|
+
}
|
|
74
84
|
throw error;
|
|
85
|
+
}
|
|
75
86
|
const msg = error instanceof Error ? error.message : String(error);
|
|
76
87
|
throw serviceUnavailable(`Europe PMC fullTextXML request failed: ${msg}`, { reason: 'europepmc_unreachable', epmcId, ...recoveryFor('europepmc_unreachable') }, { cause: error });
|
|
77
88
|
}
|
|
78
|
-
if (response.status === 404) {
|
|
79
|
-
return { kind: 'not-available', reason: 'EPMC has no fullTextXML for this record' };
|
|
80
|
-
}
|
|
81
|
-
if (!response.ok) {
|
|
82
|
-
throw await httpErrorFromResponse(response, {
|
|
83
|
-
service: 'Europe PMC fullTextXML',
|
|
84
|
-
data: { epmcId, reason: 'europepmc_unreachable', ...recoveryFor('europepmc_unreachable') },
|
|
85
|
-
});
|
|
86
|
-
}
|
|
87
89
|
const xml = await response.text();
|
|
88
90
|
if (!xml.trim()) {
|
|
89
91
|
logger.debug('Europe PMC returned an empty fullTextXML body.', requestContextService.createRequestContext({
|
|
@@ -128,12 +130,6 @@ export class EuropePmcApiClient {
|
|
|
128
130
|
const msg = error instanceof Error ? error.message : String(error);
|
|
129
131
|
throw serviceUnavailable(`Europe PMC links request failed: ${msg}`, { reason: 'europepmc_unreachable', ...recoveryFor('europepmc_unreachable') }, { cause: error });
|
|
130
132
|
}
|
|
131
|
-
if (!response.ok) {
|
|
132
|
-
throw await httpErrorFromResponse(response, {
|
|
133
|
-
service: 'Europe PMC',
|
|
134
|
-
data: { url, reason: 'europepmc_unreachable', ...recoveryFor('europepmc_unreachable') },
|
|
135
|
-
});
|
|
136
|
-
}
|
|
137
133
|
return response.text();
|
|
138
134
|
}
|
|
139
135
|
buildSearchUrl(params) {
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"api-client.js","sourceRoot":"","sources":["../../../src/services/europe-pmc/api-client.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,EAAE,QAAQ,EAAE,kBAAkB,EAAE,MAAM,+BAA+B,CAAC;
|
|
1
|
+
{"version":3,"file":"api-client.js","sourceRoot":"","sources":["../../../src/services/europe-pmc/api-client.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,EAAE,gBAAgB,EAAE,QAAQ,EAAE,kBAAkB,EAAE,MAAM,+BAA+B,CAAC;AAC/F,OAAO,EAAE,gBAAgB,EAAE,MAAM,EAAE,qBAAqB,EAAE,MAAM,8BAA8B,CAAC;AAE/F,OAAO,EAAE,WAAW,EAAE,MAAM,+BAA+B,CAAC;AAC5D,OAAO,EAAE,kBAAkB,EAA8B,MAAM,YAAY,CAAC;AAE5E,MAAM,UAAU,GAAG,qEAAqE,CAAC;AAezF;;;;;;;;GAQG;AACH,MAAM,OAAO,kBAAkB;IACA,MAAM;IAAnC,YAA6B,MAAgC;sBAAhC,MAAM;IAA6B,CAAC;IAEjE;;;;OAIG;IACH,KAAK,CAAC,MAAM,CAAC,MAA6B;QACxC,MAAM,GAAG,GAAG,IAAI,CAAC,cAAc,CAAC,MAAM,CAAC,CAAC;QACxC,MAAM,GAAG,GAAG,qBAAqB,CAAC,oBAAoB,CAAC;YACrD,SAAS,EAAE,iBAAiB;YAC5B,KAAK,EAAE,MAAM,CAAC,KAAK;SACpB,CAAC,CAAC;QAEH,IAAI,QAAkB,CAAC;QACvB,IAAI,CAAC;YACH,QAAQ,GAAG,MAAM,gBAAgB,CAAC,GAAG,EAAE,IAAI,CAAC,MAAM,CAAC,SAAS,EAAE,GAAG,EAAE;gBACjE,OAAO,EAAE,EAAE,MAAM,EAAE,kBAAkB,EAAE,YAAY,EAAE,UAAU,EAAE;gBACjE,GAAG,CAAC,MAAM,CAAC,MAAM,IAAI,EAAE,MAAM,EAAE,MAAM,CAAC,MAAM,EAAE,CAAC;aAChD,CAAC,CAAC;QACL,CAAC;QAAC,OAAO,KAAc,EAAE,CAAC;YACxB,IAAI,KAAK,YAAY,QAAQ;gBAAE,MAAM,KAAK,CAAC;YAC3C,MAAM,GAAG,GAAG,KAAK,YAAY,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC;YACnE,MAAM,kBAAkB,CACtB,qCAAqC,GAAG,EAAE,EAC1C,EAAE,MAAM,EAAE,uBAAuB,EAAE,GAAG,WAAW,CAAC,uBAAuB,CAAC,EAAE,EAC5E,EAAE,KAAK,EAAE,KAAK,EAAE,CACjB,CAAC;QACJ,CAAC;QAED,OAAO,QAAQ,CAAC,IAAI,EAAE,CAAC;IACzB,CAAC;IAED;;;;;;;;;OASG;IACH,KAAK,CAAC,WAAW,CAAC,MAAc,EAAE,MAAoB;QACpD,MAAM,GAAG,GAAG,GAAG,kBAAkB,IAAI,kBAAkB,CAAC,MAAM,CAAC,cAAc,CAAC;QAC9E,MAAM,GAAG,GAAG,qBAAqB,CAAC,oBAAoB,CAAC;YACrD,SAAS,EAAE,sBAAsB;YACjC,MAAM;SACP,CAAC,CAAC;QAEH,IAAI,QAAkB,CAAC;QACvB,IAAI,CAAC;YACH,QAAQ,GAAG,MAAM,gBAAgB,CAAC,GAAG,EAAE,IAAI,CAAC,MAAM,CAAC,SAAS,EAAE,GAAG,EAAE;gBACjE,OAAO,EAAE;oBACP,MAAM,EAAE,sCAAsC;oBAC9C,YAAY,EAAE,UAAU;iBACzB;gBACD,gBAAgB,EAAE,CAAC,GAAG,CAAC;gBACvB,GAAG,CAAC,MAAM,IAAI,EAAE,MAAM,EAAE,CAAC;aAC1B,CAAC,CAAC;QACL,CAAC;QAAC,OAAO,KAAc,EAAE,CAAC;YACxB,IAAI,KAAK,YAAY,QAAQ,EAAE,CAAC;gBAC9B,IAAI,KAAK,CAAC,IAAI,KAAK,gBAAgB,CAAC,QAAQ,EAAE,CAAC;oBAC7C,OAAO,EAAE,IAAI,EAAE,eAAe,EAAE,MAAM,EAAE,yCAAyC,EAAE,CAAC;gBACtF,CAAC;gBACD,MAAM,KAAK,CAAC;YACd,CAAC;YACD,MAAM,GAAG,GAAG,KAAK,YAAY,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC;YACnE,MAAM,kBAAkB,CACtB,0CAA0C,GAAG,EAAE,EAC/C,EAAE,MAAM,EAAE,uBAAuB,EAAE,MAAM,EAAE,GAAG,WAAW,CAAC,uBAAuB,CAAC,EAAE,EACpF,EAAE,KAAK,EAAE,KAAK,EAAE,CACjB,CAAC;QACJ,CAAC;QAED,MAAM,GAAG,GAAG,MAAM,QAAQ,CAAC,IAAI,EAAE,CAAC;QAClC,IAAI,CAAC,GAAG,CAAC,IAAI,EAAE,EAAE,CAAC;YAChB,MAAM,CAAC,KAAK,CACV,gDAAgD,EAChD,qBAAqB,CAAC,oBAAoB,CAAC;gBACzC,SAAS,EAAE,2BAA2B;gBACtC,MAAM;aACP,CAAC,CACH,CAAC;YACF,OAAO,EAAE,IAAI,EAAE,eAAe,EAAE,MAAM,EAAE,yCAAyC,EAAE,CAAC;QACtF,CAAC;QACD,OAAO,EAAE,IAAI,EAAE,OAAO,EAAE,GAAG,EAAE,CAAC;IAChC,CAAC;IAED;;;;OAIG;IACH,SAAS,CAAC,IAAY,EAAE,QAAgB,EAAE,IAAY,EAAE,MAAoB;QAC1E,MAAM,GAAG,GAAG,GAAG,kBAAkB,QAAQ,kBAAkB,CAAC,IAAI,CAAC,mBAAmB,IAAI,aAAa,QAAQ,cAAc,CAAC;QAC5H,OAAO,IAAI,CAAC,cAAc,CAAC,GAAG,EAAE,oBAAoB,EAAE,IAAI,EAAE,MAAM,CAAC,CAAC;IACtE,CAAC;IAED;;;;OAIG;IACH,UAAU,CAAC,IAAY,EAAE,QAAgB,EAAE,IAAY,EAAE,MAAoB;QAC3E,MAAM,GAAG,GAAG,GAAG,kBAAkB,QAAQ,kBAAkB,CAAC,IAAI,CAAC,oBAAoB,IAAI,aAAa,QAAQ,cAAc,CAAC;QAC7H,OAAO,IAAI,CAAC,cAAc,CAAC,GAAG,EAAE,qBAAqB,EAAE,IAAI,EAAE,MAAM,CAAC,CAAC;IACvE,CAAC;IAED,iFAAiF;IACzE,KAAK,CAAC,cAAc,CAC1B,GAAW,EACX,SAAiB,EACjB,IAAY,EACZ,MAAoB;QAEpB,MAAM,GAAG,GAAG,qBAAqB,CAAC,oBAAoB,CAAC,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC;QAE5E,IAAI,QAAkB,CAAC;QACvB,IAAI,CAAC;YACH,QAAQ,GAAG,MAAM,gBAAgB,CAAC,GAAG,EAAE,IAAI,CAAC,MAAM,CAAC,SAAS,EAAE,GAAG,EAAE;gBACjE,OAAO,EAAE,EAAE,MAAM,EAAE,kBAAkB,EAAE,YAAY,EAAE,UAAU,EAAE;gBACjE,GAAG,CAAC,MAAM,IAAI,EAAE,MAAM,EAAE,CAAC;aAC1B,CAAC,CAAC;QACL,CAAC;QAAC,OAAO,KAAc,EAAE,CAAC;YACxB,IAAI,KAAK,YAAY,QAAQ;gBAAE,MAAM,KAAK,CAAC;YAC3C,MAAM,GAAG,GAAG,KAAK,YAAY,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC;YACnE,MAAM,kBAAkB,CACtB,oCAAoC,GAAG,EAAE,EACzC,EAAE,MAAM,EAAE,uBAAuB,EAAE,GAAG,WAAW,CAAC,uBAAuB,CAAC,EAAE,EAC5E,EAAE,KAAK,EAAE,KAAK,EAAE,CACjB,CAAC;QACJ,CAAC;QAED,OAAO,QAAQ,CAAC,IAAI,EAAE,CAAC;IACzB,CAAC;IAEO,cAAc,CAAC,MAA6B;QAClD,MAAM,WAAW,GAA2B;YAC1C,KAAK,EAAE,IAAI,CAAC,gBAAgB,CAAC,MAAM,CAAC;YACpC,MAAM,EAAE,MAAM;YACd,UAAU,EAAE,MAAM,CAAC,UAAU,IAAI,MAAM;YACvC,QAAQ,EAAE,MAAM,CAAC,MAAM,CAAC,QAAQ,IAAI,EAAE,CAAC;YACvC,UAAU,EAAE,MAAM,CAAC,UAAU,IAAI,GAAG;SACrC,CAAC;QACF,IAAI,MAAM,CAAC,IAAI;YAAE,WAAW,CAAC,IAAI,GAAG,MAAM,CAAC,IAAI,CAAC;QAChD,IAAI,IAAI,CAAC,MAAM,CAAC,KAAK;YAAE,WAAW,CAAC,KAAK,GAAG,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC;QAE7D,OAAO,GAAG,kBAAkB,WAAW,IAAI,eAAe,CAAC,WAAW,CAAC,CAAC,QAAQ,EAAE,EAAE,CAAC;IACvF,CAAC;IAED;;;;OAIG;IACK,gBAAgB,CAAC,MAA6B;QACpD,MAAM,IAAI,GAAG,MAAM,CAAC,KAAK,CAAC,IAAI,EAAE,CAAC;QACjC,IAAI,CAAC,MAAM,CAAC,OAAO,IAAI,MAAM,CAAC,OAAO,CAAC,MAAM,KAAK,CAAC;YAAE,OAAO,IAAI,CAAC;QAChE,MAAM,YAAY,GAAG,MAAM,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC;QAC1E,OAAO,IAAI,IAAI,UAAU,YAAY,GAAG,CAAC;IAC3C,CAAC;CACF"}
|
|
@@ -1,9 +1,11 @@
|
|
|
1
1
|
/**
|
|
2
2
|
* @fileoverview Europe PMC service. Wraps the EPMC REST API with rate-limiting,
|
|
3
|
-
* retries, and JATS XML parsing.
|
|
4
|
-
*
|
|
5
|
-
*
|
|
6
|
-
* `
|
|
3
|
+
* retries, and JATS XML parsing. `search()` covers keyword discovery across the
|
|
4
|
+
* EPMC corpus (MED/PMC/PPR/PAT/AGR), `fetchRecords()` resolves specific records
|
|
5
|
+
* by `source` + EPMC id, `fullTextXml()` fetches a record's full-text JATS, and
|
|
6
|
+
* `citations()` / `references()` walk EPMC's link graph. The XML parser matches
|
|
7
|
+
* NCBI's ordered config so `parsePmcArticle` consumes the result without
|
|
8
|
+
* modification.
|
|
7
9
|
*
|
|
8
10
|
* Optional service: only constructed when `EUROPEPMC_ENABLED=true` (the
|
|
9
11
|
* default). `getEuropePmcService()` returns `undefined` when disabled so
|
|
@@ -14,13 +16,15 @@
|
|
|
14
16
|
import type { JatsNode } from '../../services/ncbi/parsing/pmc-xml-helpers.js';
|
|
15
17
|
import { EuropePmcApiClient } from './api-client.js';
|
|
16
18
|
import { EuropePmcRequestQueue } from './request-queue.js';
|
|
17
|
-
import type { EuropePmcFullTextResult, EuropePmcRelatedResult, EuropePmcSearchParams, EuropePmcSearchResult, EuropePmcSource } from './types.js';
|
|
19
|
+
import type { EuropePmcFullTextResult, EuropePmcRecordRef, EuropePmcRelatedResult, EuropePmcSearchHit, EuropePmcSearchParams, EuropePmcSearchResult, EuropePmcSource } from './types.js';
|
|
18
20
|
/**
|
|
19
|
-
* Facade over the Europe PMC REST API
|
|
21
|
+
* Facade over the Europe PMC REST API:
|
|
20
22
|
* - `search()` — keyword search across MED/PMC/PPR/PAT/AGR.
|
|
23
|
+
* - `fetchRecords()` — batch lookup of specific records by source + EPMC id.
|
|
21
24
|
* - `fullTextXml()` — JATS full text for an EPMC record.
|
|
25
|
+
* - `citations()` / `references()` — EPMC's link graph for a PubMed article.
|
|
22
26
|
*
|
|
23
|
-
*
|
|
27
|
+
* All honor `ctx.signal` for cancellation and retry transient failures with
|
|
24
28
|
* capped exponential backoff plus jitter.
|
|
25
29
|
*/
|
|
26
30
|
export declare class EuropePmcService {
|
|
@@ -34,6 +38,16 @@ export declare class EuropePmcService {
|
|
|
34
38
|
* omit) for the first page; pass the returned `nextCursorMark` for the next.
|
|
35
39
|
*/
|
|
36
40
|
search(params: EuropePmcSearchParams): Promise<EuropePmcSearchResult>;
|
|
41
|
+
/**
|
|
42
|
+
* Look up specific records by `source` + EPMC id. One search request covers
|
|
43
|
+
* the whole batch: each ref becomes an `(EXT_ID:<id> AND SRC:<source>)`
|
|
44
|
+
* clause, OR-joined into a single query.
|
|
45
|
+
*
|
|
46
|
+
* Returns the hits Europe PMC resolved, in the order it returned them.
|
|
47
|
+
* Unmatched refs are simply absent — callers diff against their own request
|
|
48
|
+
* to report misses rather than getting a padded array back.
|
|
49
|
+
*/
|
|
50
|
+
fetchRecords(refs: readonly EuropePmcRecordRef[], signal?: AbortSignal): Promise<EuropePmcSearchHit[]>;
|
|
37
51
|
/**
|
|
38
52
|
* Fetch the JATS full text for an EPMC record. Returns:
|
|
39
53
|
* - `{ kind: 'found', xml, epmcId, source }` — JATS XML string usable
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"europe-pmc-service.d.ts","sourceRoot":"","sources":["../../../src/services/europe-pmc/europe-pmc-service.ts"],"names":[],"mappings":"AAAA
|
|
1
|
+
{"version":3,"file":"europe-pmc-service.d.ts","sourceRoot":"","sources":["../../../src/services/europe-pmc/europe-pmc-service.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;GAcG;AAeH,OAAO,KAAK,EAAE,QAAQ,EAAgB,MAAM,4CAA4C,CAAC;AAEzF,OAAO,EAAE,kBAAkB,EAAE,MAAM,iBAAiB,CAAC;AACrD,OAAO,EAAE,qBAAqB,EAAE,MAAM,oBAAoB,CAAC;AAC3D,OAAO,KAAK,EACV,uBAAuB,EAEvB,kBAAkB,EAElB,sBAAsB,EACtB,kBAAkB,EAClB,qBAAqB,EAErB,qBAAqB,EACrB,eAAe,EAChB,MAAM,YAAY,CAAC;AAuCpB;;;;;;;;;GASG;AACH,qBAAa,gBAAgB;IAIzB,OAAO,CAAC,QAAQ,CAAC,MAAM;IACvB,OAAO,CAAC,QAAQ,CAAC,KAAK;IACtB,OAAO,CAAC,QAAQ,CAAC,UAAU;IAL7B,OAAO,CAAC,QAAQ,CAAC,gBAAgB,CAAY;IAE7C,YACmB,MAAM,EAAE,kBAAkB,EAC1B,KAAK,EAAE,qBAAqB,EAC5B,UAAU,EAAE,MAAM,EAiBpC;IAED;;;OAGG;IACG,MAAM,CAAC,MAAM,EAAE,qBAAqB,GAAG,OAAO,CAAC,qBAAqB,CAAC,CA6F1E;IAED;;;;;;;;OAQG;IACG,YAAY,CAChB,IAAI,EAAE,SAAS,kBAAkB,EAAE,EACnC,MAAM,CAAC,EAAE,WAAW,GACnB,OAAO,CAAC,kBAAkB,EAAE,CAAC,CAQ/B;IAED;;;;;;;OAOG;IACG,WAAW,CACf,MAAM,EAAE,MAAM,EACd,MAAM,EAAE,eAAe,EACvB,MAAM,CAAC,EAAE,WAAW,GACnB,OAAO,CAAC,uBAAuB,CAAC,CAgBlC;IAED;;;;;;;;;OASG;IACH,SAAS,CACP,IAAI,EAAE,MAAM,EACZ,QAAQ,EAAE,MAAM,EAChB,IAAI,EAAE,MAAM,EACZ,MAAM,CAAC,EAAE,WAAW,GACnB,OAAO,CAAC,sBAAsB,CAAC,CAQjC;IAED;;;;;;;;;OASG;IACH,UAAU,CACR,IAAI,EAAE,MAAM,EACZ,QAAQ,EAAE,MAAM,EAChB,IAAI,EAAE,MAAM,EACZ,MAAM,CAAC,EAAE,WAAW,GACnB,OAAO,CAAC,sBAAsB,CAAC,CAQjC;IAED;;;OAGG;YACW,iBAAiB;IA6C/B;;;;;;;;OAQG;IACH,gBAAgB,CAAC,GAAG,EAAE,MAAM,GAAG,QAAQ,GAAG,SAAS,CA8BlD;IAED;;;;OAIG;YACW,SAAS;CAsDxB;AAMD;;;;GAIG;AACH,wBAAgB,oBAAoB,IAAI,IAAI,CAuB3C;AAED,6EAA6E;AAC7E,wBAAgB,mBAAmB,IAAI,gBAAgB,GAAG,SAAS,CAElE"}
|
|
@@ -1,9 +1,11 @@
|
|
|
1
1
|
/**
|
|
2
2
|
* @fileoverview Europe PMC service. Wraps the EPMC REST API with rate-limiting,
|
|
3
|
-
* retries, and JATS XML parsing.
|
|
4
|
-
*
|
|
5
|
-
*
|
|
6
|
-
* `
|
|
3
|
+
* retries, and JATS XML parsing. `search()` covers keyword discovery across the
|
|
4
|
+
* EPMC corpus (MED/PMC/PPR/PAT/AGR), `fetchRecords()` resolves specific records
|
|
5
|
+
* by `source` + EPMC id, `fullTextXml()` fetches a record's full-text JATS, and
|
|
6
|
+
* `citations()` / `references()` walk EPMC's link graph. The XML parser matches
|
|
7
|
+
* NCBI's ordered config so `parsePmcArticle` consumes the result without
|
|
8
|
+
* modification.
|
|
7
9
|
*
|
|
8
10
|
* Optional service: only constructed when `EUROPEPMC_ENABLED=true` (the
|
|
9
11
|
* default). `getEuropePmcService()` returns `undefined` when disabled so
|
|
@@ -45,11 +47,24 @@ function abortableSleep(ms, signal) {
|
|
|
45
47
|
});
|
|
46
48
|
}
|
|
47
49
|
/**
|
|
48
|
-
*
|
|
50
|
+
* Europe PMC lookup clause for one record addressed by `source` + EPMC id.
|
|
51
|
+
*
|
|
52
|
+
* The unquoted form is load-bearing: Europe PMC matches zero records for
|
|
53
|
+
* `EXT_ID:"<id>" AND SRC:<source>` — quotes survive on an identifier token only
|
|
54
|
+
* while no `AND SRC:` clause follows it. Callers pass ids through a schema that
|
|
55
|
+
* restricts them to identifier characters, so no escaping is applied here.
|
|
56
|
+
*/
|
|
57
|
+
function recordLookupQuery({ epmcId, source }) {
|
|
58
|
+
return `(EXT_ID:${epmcId} AND SRC:${source})`;
|
|
59
|
+
}
|
|
60
|
+
/**
|
|
61
|
+
* Facade over the Europe PMC REST API:
|
|
49
62
|
* - `search()` — keyword search across MED/PMC/PPR/PAT/AGR.
|
|
63
|
+
* - `fetchRecords()` — batch lookup of specific records by source + EPMC id.
|
|
50
64
|
* - `fullTextXml()` — JATS full text for an EPMC record.
|
|
65
|
+
* - `citations()` / `references()` — EPMC's link graph for a PubMed article.
|
|
51
66
|
*
|
|
52
|
-
*
|
|
67
|
+
* All honor `ctx.signal` for cancellation and retry transient failures with
|
|
53
68
|
* capped exponential backoff plus jitter.
|
|
54
69
|
*/
|
|
55
70
|
export class EuropePmcService {
|
|
@@ -159,6 +174,24 @@ export class EuropePmcService {
|
|
|
159
174
|
query: echoed,
|
|
160
175
|
};
|
|
161
176
|
}
|
|
177
|
+
/**
|
|
178
|
+
* Look up specific records by `source` + EPMC id. One search request covers
|
|
179
|
+
* the whole batch: each ref becomes an `(EXT_ID:<id> AND SRC:<source>)`
|
|
180
|
+
* clause, OR-joined into a single query.
|
|
181
|
+
*
|
|
182
|
+
* Returns the hits Europe PMC resolved, in the order it returned them.
|
|
183
|
+
* Unmatched refs are simply absent — callers diff against their own request
|
|
184
|
+
* to report misses rather than getting a padded array back.
|
|
185
|
+
*/
|
|
186
|
+
async fetchRecords(refs, signal) {
|
|
187
|
+
const result = await this.search({
|
|
188
|
+
query: refs.map(recordLookupQuery).join(' OR '),
|
|
189
|
+
resultType: 'core',
|
|
190
|
+
pageSize: refs.length,
|
|
191
|
+
...(signal && { signal }),
|
|
192
|
+
});
|
|
193
|
+
return result.hits;
|
|
194
|
+
}
|
|
162
195
|
/**
|
|
163
196
|
* Fetch the JATS full text for an EPMC record. Returns:
|
|
164
197
|
* - `{ kind: 'found', xml, epmcId, source }` — JATS XML string usable
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"europe-pmc-service.js","sourceRoot":"","sources":["../../../src/services/europe-pmc/europe-pmc-service.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;GAYG;AAEH,OAAO,EACL,aAAa,EACb,gBAAgB,EAChB,QAAQ,EACR,kBAAkB,EAClB,eAAe,GAChB,MAAM,+BAA+B,CAAC;AACvC,OAAO,EAAE,MAAM,EAAE,qBAAqB,EAAE,MAAM,8BAA8B,CAAC;AAC7E,mHAAmH;AACnH,OAAO,EAAE,SAAS,EAAE,YAAY,EAAE,MAAM,iBAAiB,CAAC;AAE1D,OAAO,EAAE,eAAe,EAAE,MAAM,2BAA2B,CAAC;AAC5D,OAAO,EAAE,WAAW,EAAE,MAAM,+BAA+B,CAAC;AAE5D,OAAO,EAAE,WAAW,EAAE,MAAM,wCAAwC,CAAC;AACrE,OAAO,EAAE,kBAAkB,EAAE,MAAM,iBAAiB,CAAC;AACrD,OAAO,EAAE,qBAAqB,EAAE,MAAM,oBAAoB,CAAC;AAa3D,sDAAsD;AACtD,MAAM,eAAe,GAAG,IAAI,GAAG,CAAmB;IAChD,gBAAgB,CAAC,kBAAkB;IACnC,gBAAgB,CAAC,OAAO;IACxB,gBAAgB,CAAC,WAAW;CAC7B,CAAC,CAAC;AAEH,MAAM,cAAc,GAAG,MAAM,CAAC;AAE9B,SAAS,cAAc,CAAC,EAAU,EAAE,MAAoB;IACtD,IAAI,CAAC,MAAM;QAAE,OAAO,IAAI,OAAO,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,UAAU,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC;IAC1D,IAAI,MAAM,CAAC,OAAO;QAAE,OAAO,OAAO,CAAC,MAAM,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC;IACzD,OAAO,IAAI,OAAO,CAAO,CAAC,OAAO,EAAE,MAAM,EAAE,EAAE;QAC3C,MAAM,OAAO,GAAG,GAAG,EAAE;YACnB,YAAY,CAAC,KAAK,CAAC,CAAC;YACpB,MAAM,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC;QACxB,CAAC,CAAC;QACF,MAAM,KAAK,GAAG,UAAU,CAAC,GAAG,EAAE;YAC5B,MAAM,CAAC,mBAAmB,CAAC,OAAO,EAAE,OAAO,CAAC,CAAC;YAC7C,OAAO,EAAE,CAAC;QACZ,CAAC,EAAE,EAAE,CAAC,CAAC;QACP,MAAM,CAAC,gBAAgB,CAAC,OAAO,EAAE,OAAO,EAAE,EAAE,IAAI,EAAE,IAAI,EAAE,CAAC,CAAC;IAC5D,CAAC,CAAC,CAAC;AACL,CAAC;AAED;;;;;;;GAOG;AACH,MAAM,OAAO,gBAAgB;IAIR,MAAM;IACN,KAAK;IACL,UAAU;IALZ,gBAAgB,CAAY;IAE7C,YACmB,MAA0B,EAC1B,KAA4B,EAC5B,UAAkB;sBAFlB,MAAM;qBACN,KAAK;0BACL,UAAU;QAE3B;;;;;WAKG;QACH,IAAI,CAAC,gBAAgB,GAAG,IAAI,SAAS,CAAC;YACpC,aAAa,EAAE,IAAI;YACnB,gBAAgB,EAAE,KAAK;YACvB,mBAAmB,EAAE,IAAI;YACzB,aAAa,EAAE,IAAI;YACnB,UAAU,EAAE,KAAK;YACjB,eAAe,EAAE,IAAI;YACrB,YAAY,EAAE,IAAI;SACnB,CAAC,CAAC;IACL,CAAC;IAED;;;OAGG;IACH,KAAK,CAAC,MAAM,CAAC,MAA6B;QACxC,MAAM,IAAI,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,OAAO,CACnC,GAAG,EAAE,CAAC,IAAI,CAAC,SAAS,CAAC,GAAG,EAAE,CAAC,IAAI,CAAC,MAAM,CAAC,MAAM,CAAC,MAAM,CAAC,EAAE,QAAQ,EAAE,MAAM,CAAC,MAAM,CAAC,EAC/E,QAAQ,EACR,MAAM,CAAC,MAAM,CACd,CAAC;QAEF,IAAI,MAA+B,CAAC;QACpC,IAAI,CAAC;YACH,MAAM,GAAG,IAAI,CAAC,KAAK,CAAC,IAAI,CAA4B,CAAC;QACvD,CAAC;QAAC,OAAO,KAAc,EAAE,CAAC;YACxB,MAAM,kBAAkB,CACtB,kDAAkD,EAClD;gBACE,MAAM,EAAE,4BAA4B;gBACpC,eAAe,EAAE,IAAI,CAAC,SAAS,CAAC,CAAC,EAAE,GAAG,CAAC;gBACvC,GAAG,WAAW,CAAC,4BAA4B,CAAC;aAC7C,EACD,EAAE,KAAK,EAAE,KAAK,EAAE,CACjB,CAAC;QACJ,CAAC;QAED;;;;WAIG;QACH,MAAM,MAAM,GAAG,OAAO,MAAM,CAAC,MAAM,KAAK,QAAQ,CAAC,CAAC,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC,SAAS,CAAC;QAC7E,IAAI,MAAM,EAAE,CAAC;YACX,MAAM,eAAe,CAAC,oCAAoC,MAAM,EAAE,EAAE;gBAClE,MAAM,EAAE,yBAAyB;gBACjC,WAAW,EAAE,MAAM,CAAC,OAAO;gBAC3B,UAAU,EAAE,MAAM;gBAClB,QAAQ,EAAE,EAAE,IAAI,EAAE,yBAAyB,MAAM,6BAA6B,EAAE;aACjF,CAAC,CAAC;QACL,CAAC;QAED;;;;;;;WAOG;QACH,IACE,MAAM,CAAC,QAAQ,KAAK,SAAS;YAC7B,MAAM,CAAC,OAAO,KAAK,SAAS;YAC5B,MAAM,CAAC,UAAU,KAAK,SAAS,EAC/B,CAAC;YACD,wEAAwE;YACxE,qEAAqE;YACrE,qEAAqE;YACrE,uEAAuE;YACvE,sBAAsB;YACtB,MAAM,EAAE,OAAO,EAAE,IAAI,EAAE,GAAG,MAAM,CAAC,IAAI;gBACnC,CAAC,CAAC;oBACE,OAAO,EAAE,kFAAkF,MAAM,CAAC,IAAI,IAAI;oBAC1G,IAAI,EAAE,qIAAqI;iBAC5I;gBACH,CAAC,CAAC;oBACE,OAAO,EAAE,6EAA6E;oBACtF,IAAI,EAAE,kEAAkE;iBACzE,CAAC;YACN,MAAM,eAAe,CAAC,OAAO,EAAE;gBAC7B,MAAM,EAAE,yBAAyB;gBACjC,GAAG,CAAC,MAAM,CAAC,IAAI,IAAI,EAAE,IAAI,EAAE,MAAM,CAAC,IAAI,EAAE,CAAC;gBACzC,GAAG,CAAC,MAAM,CAAC,UAAU,IAAI,MAAM,CAAC,UAAU,KAAK,GAAG,IAAI,EAAE,UAAU,EAAE,MAAM,CAAC,UAAU,EAAE,CAAC;gBACxF,eAAe,EAAE,IAAI,CAAC,SAAS,CAAC,CAAC,EAAE,GAAG,CAAC;gBACvC,QAAQ,EAAE,EAAE,IAAI,EAAE;aACnB,CAAC,CAAC;QACL,CAAC;QAED,MAAM,IAAI,GAAG,WAAW,CAAqB,MAAM,CAAC,UAAU,EAAE,MAAM,CAAC,CAAC;QACxE,MAAM,MAAM,GAAG,MAAM,CAAC,OAAO,EAAE,WAAW,IAAI,MAAM,CAAC,KAAK,CAAC;QAE3D,yEAAyE;QACzE,0EAA0E;QAC1E,wEAAwE;QACxE,2DAA2D;QAC3D,MAAM,UAAU,GAAG,MAAM,CAAC,UAAU,IAAI,GAAG,CAAC;QAC5C,MAAM,UAAU,GACd,MAAM,CAAC,cAAc,IAAI,MAAM,CAAC,cAAc,KAAK,UAAU;YAC3D,CAAC,CAAC,MAAM,CAAC,cAAc;YACvB,CAAC,CAAC,SAAS,CAAC;QAEhB,OAAO;YACL,IAAI;YACJ,QAAQ,EAAE,MAAM,CAAC,QAAQ,IAAI,IAAI,CAAC,MAAM;YACxC,GAAG,CAAC,UAAU,IAAI,EAAE,cAAc,EAAE,UAAU,EAAE,CAAC;YACjD,UAAU;YACV,KAAK,EAAE,MAAM;SACd,CAAC;IACJ,CAAC;IAED;;;;;;;OAOG;IACH,KAAK,CAAC,WAAW,CACf,MAAc,EACd,MAAuB,EACvB,MAAoB;QAEpB,MAAM,OAAO,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,OAAO,CACtC,GAAG,EAAE,CACH,IAAI,CAAC,SAAS,CACZ,GAAG,EAAE,CAAC,IAAI,CAAC,MAAM,CAAC,WAAW,CAAC,MAAM,EAAE,MAAM,CAAC,EAC7C,eAAe,MAAM,GAAG,EACxB,MAAM,CACP,EACH,eAAe,MAAM,GAAG,EACxB,MAAM,CACP,CAAC;QAEF,IAAI,OAAO,CAAC,IAAI,KAAK,eAAe,EAAE,CAAC;YACrC,OAAO,EAAE,IAAI,EAAE,eAAe,EAAE,MAAM,EAAE,OAAO,CAAC,MAAM,EAAE,CAAC;QAC3D,CAAC;QACD,OAAO,EAAE,IAAI,EAAE,OAAO,EAAE,GAAG,EAAE,OAAO,CAAC,GAAG,EAAE,MAAM,EAAE,MAAM,EAAE,CAAC;IAC7D,CAAC;IAED;;;;;;;;;OASG;IACH,SAAS,CACP,IAAY,EACZ,QAAgB,EAChB,IAAY,EACZ,MAAoB;QAEpB,OAAO,IAAI,CAAC,iBAAiB,CAC3B,GAAG,EAAE,CAAC,IAAI,CAAC,MAAM,CAAC,SAAS,CAAC,IAAI,EAAE,QAAQ,EAAE,IAAI,EAAE,MAAM,CAAC,EACzD,WAAW,EACX,IAAI,EACJ,CAAC,MAAM,EAAE,EAAE,CAAC,WAAW,CAAyB,MAAM,CAAC,YAAY,EAAE,QAAQ,CAAC,EAC9E,MAAM,CACP,CAAC;IACJ,CAAC;IAED;;;;;;;;;OASG;IACH,UAAU,CACR,IAAY,EACZ,QAAgB,EAChB,IAAY,EACZ,MAAoB;QAEpB,OAAO,IAAI,CAAC,iBAAiB,CAC3B,GAAG,EAAE,CAAC,IAAI,CAAC,MAAM,CAAC,UAAU,CAAC,IAAI,EAAE,QAAQ,EAAE,IAAI,EAAE,MAAM,CAAC,EAC1D,YAAY,EACZ,IAAI,EACJ,CAAC,MAAM,EAAE,EAAE,CAAC,WAAW,CAAyB,MAAM,CAAC,aAAa,EAAE,SAAS,CAAC,EAChF,MAAM,CACP,CAAC;IACJ,CAAC;IAED;;;OAGG;IACK,KAAK,CAAC,iBAAiB,CAC7B,KAA4B,EAC5B,IAAY,EACZ,IAAY,EACZ,cAA4E,EAC5E,MAAoB;QAEpB,MAAM,IAAI,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,OAAO,CACnC,GAAG,EAAE,CAAC,IAAI,CAAC,SAAS,CAAC,KAAK,EAAE,GAAG,IAAI,IAAI,IAAI,GAAG,EAAE,MAAM,CAAC,EACvD,GAAG,IAAI,IAAI,IAAI,GAAG,EAClB,MAAM,CACP,CAAC;QAEF,IAAI,MAA8B,CAAC;QACnC,IAAI,CAAC;YACH,MAAM,GAAG,IAAI,CAAC,KAAK,CAAC,IAAI,CAA2B,CAAC;QACtD,CAAC;QAAC,OAAO,KAAc,EAAE,CAAC;YACxB,MAAM,kBAAkB,CACtB,8BAA8B,IAAI,iBAAiB,EACnD;gBACE,MAAM,EAAE,4BAA4B;gBACpC,eAAe,EAAE,IAAI,CAAC,SAAS,CAAC,CAAC,EAAE,GAAG,CAAC;gBACvC,GAAG,WAAW,CAAC,4BAA4B,CAAC;aAC7C,EACD,EAAE,KAAK,EAAE,KAAK,EAAE,CACjB,CAAC;QACJ,CAAC;QAED,MAAM,OAAO,GAAG,cAAc,CAAC,MAAM,CAAC,CAAC;QACvC,MAAM,KAAK,GAAa,EAAE,CAAC;QAC3B,KAAK,MAAM,GAAG,IAAI,OAAO,EAAE,CAAC;YAC1B,0EAA0E;YAC1E,2EAA2E;YAC3E,6EAA6E;YAC7E,MAAM,SAAS,GAAG,GAAG,CAAC,IAAI,IAAI,CAAC,GAAG,CAAC,MAAM,KAAK,KAAK,CAAC,CAAC,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC;YAC1E,MAAM,CAAC,GAAG,SAAS,EAAE,IAAI,EAAE,CAAC;YAC5B,IAAI,CAAC,IAAI,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC;gBAAE,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;QAC1C,CAAC;QAED,OAAO;YACL,KAAK;YACL,UAAU,EAAE,MAAM,CAAC,QAAQ,IAAI,OAAO,CAAC,MAAM;SAC9C,CAAC;IACJ,CAAC;IAED;;;;;;;;OAQG;IACH,gBAAgB,CAAC,GAAW;QAC1B,MAAM,gBAAgB,GAAG,YAAY,CAAC,QAAQ,CAAC,GAAG,CAAC,OAAO,CAAC,mBAAmB,EAAE,EAAE,CAAC,CAAC,CAAC;QACrF,IAAI,gBAAgB,KAAK,IAAI,EAAE,CAAC;YAC9B,MAAM,kBAAkB,CAAC,uCAAuC,EAAE;gBAChE,MAAM,EAAE,4BAA4B;gBACpC,eAAe,EAAE,GAAG,CAAC,SAAS,CAAC,CAAC,EAAE,GAAG,CAAC;gBACtC,GAAG,WAAW,CAAC,4BAA4B,CAAC;aAC7C,CAAC,CAAC;QACL,CAAC;QAED,IAAI,MAAe,CAAC;QACpB,IAAI,CAAC;YACH,MAAM,GAAG,IAAI,CAAC,gBAAgB,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC;QAC5C,CAAC;QAAC,OAAO,KAAc,EAAE,CAAC;YACxB,MAAM,WAAW,GAAG,KAAK,YAAY,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC;YAC3E,MAAM,kBAAkB,CACtB,oDAAoD,WAAW,EAAE,EACjE;gBACE,MAAM,EAAE,4BAA4B;gBACpC,WAAW;gBACX,eAAe,EAAE,GAAG,CAAC,SAAS,CAAC,CAAC,EAAE,GAAG,CAAC;gBACtC,GAAG,WAAW,CAAC,4BAA4B,CAAC;aAC7C,EACD,EAAE,KAAK,EAAE,KAAK,EAAE,CACjB,CAAC;QACJ,CAAC;QAED,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,MAAM,CAAC;YAAE,OAAO;QACnC,MAAM,KAAK,GAAG,MAAsB,CAAC;QACrC,OAAO,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,SAAS,IAAI,CAAC,CAAC,CAAC;IAC3C,CAAC;IAED;;;;OAIG;IACK,KAAK,CAAC,SAAS,CACrB,OAAyB,EACzB,KAAa,EACb,MAAoB;QAEpB,KAAK,IAAI,OAAO,GAAG,CAAC,EAAE,OAAO,IAAI,IAAI,CAAC,UAAU,EAAE,OAAO,EAAE,EAAE,CAAC;YAC5D,IAAI,MAAM,EAAE,OAAO;gBAAE,MAAM,MAAM,CAAC,MAAM,CAAC;YAEzC,IAAI,CAAC;gBACH,OAAO,MAAM,OAAO,EAAE,CAAC;YACzB,CAAC;YAAC,OAAO,KAAc,EAAE,CAAC;gBACxB,IAAI,MAAM,EAAE,OAAO;oBAAE,MAAM,MAAM,CAAC,MAAM,CAAC;gBACzC,IAAI,CAAC,CAAC,KAAK,YAAY,QAAQ,CAAC;oBAAE,MAAM,KAAK,CAAC;gBAC9C,IAAI,CAAC,eAAe,CAAC,GAAG,CAAC,KAAK,CAAC,IAAI,CAAC;oBAAE,MAAM,KAAK,CAAC;gBAElD,IAAI,OAAO,GAAG,IAAI,CAAC,UAAU,EAAE,CAAC;oBAC9B,MAAM,SAAS,GAAG,IAAI,CAAC,GAAG,CAAC,IAAI,GAAG,CAAC,IAAI,OAAO,EAAE,cAAc,CAAC,CAAC;oBAChE,MAAM,MAAM,GAAG,SAAS,GAAG,CAAC,IAAI,GAAG,GAAG,GAAG,IAAI,CAAC,MAAM,EAAE,CAAC,CAAC;oBACxD,MAAM,UAAU,GAAG,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC;oBACtC,MAAM,CAAC,OAAO,CACZ,cAAc,KAAK,sBAAsB,OAAO,GAAG,CAAC,IAAI,IAAI,CAAC,UAAU,QAAQ,UAAU,KAAK,EAC9F,qBAAqB,CAAC,oBAAoB,CAAC;wBACzC,SAAS,EAAE,gBAAgB;wBAC3B,KAAK;wBACL,OAAO,EAAE,OAAO,GAAG,CAAC;wBACpB,UAAU;qBACX,CAAC,CACH,CAAC;oBACF,MAAM,cAAc,CAAC,UAAU,EAAE,MAAM,CAAC,CAAC;oBACzC,SAAS;gBACX,CAAC;gBAED,MAAM,QAAQ,GAAG,IAAI,CAAC,UAAU,GAAG,CAAC,CAAC;gBACrC,MAAM,GAAG,GAAG,KAAK,YAAY,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC;gBACnE,MAAM,IAAI,QAAQ,CAChB,KAAK,CAAC,IAAI,EACV,GAAG,GAAG,kBAAkB,QAAQ,YAAY,EAC5C;oBACE,MAAM,EAAE,uBAAuB;oBAC/B,KAAK;oBACL,QAAQ;oBACR,GAAG,WAAW,CAAC,uBAAuB,CAAC;iBACxC,EACD,EAAE,KAAK,EAAE,KAAK,EAAE,CACjB,CAAC;YACJ,CAAC;QACH,CAAC;QAED,MAAM,aAAa,CAAC,8CAA8C,EAAE;YAClE,MAAM,EAAE,uBAAuB;YAC/B,KAAK;YACL,GAAG,WAAW,CAAC,uBAAuB,CAAC;SACxC,CAAC,CAAC;IACL,CAAC;CACF;AAED,+EAA+E;AAE/E,IAAI,QAAsC,CAAC;AAE3C;;;;GAIG;AACH,MAAM,UAAU,oBAAoB;IAClC,MAAM,MAAM,GAAG,eAAe,EAAE,CAAC;IACjC,IAAI,CAAC,MAAM,CAAC,gBAAgB,EAAE,CAAC;QAC7B,MAAM,CAAC,IAAI,CAAC,wDAAwD,CAAC,CAAC;QACtE,OAAO;IACT,CAAC;IAED,MAAM,MAAM,GAAG,IAAI,kBAAkB,CAAC;QACpC,SAAS,EAAE,MAAM,CAAC,kBAAkB;QACpC,GAAG,CAAC,MAAM,CAAC,cAAc,IAAI,EAAE,KAAK,EAAE,MAAM,CAAC,cAAc,EAAE,CAAC;KAC/D,CAAC,CAAC;IACH,MAAM,KAAK,GAAG,IAAI,qBAAqB,CAAC,MAAM,CAAC,uBAAuB,CAAC,CAAC;IACxE,QAAQ,GAAG,IAAI,gBAAgB,CAAC,MAAM,EAAE,KAAK,EAAE,MAAM,CAAC,mBAAmB,CAAC,CAAC;IAC3E,MAAM,CAAC,IAAI,CACT,iCAAiC,EACjC,qBAAqB,CAAC,oBAAoB,CAAC;QACzC,SAAS,EAAE,eAAe;QAC1B,cAAc,EAAE,MAAM,CAAC,uBAAuB;QAC9C,UAAU,EAAE,MAAM,CAAC,mBAAmB;QACtC,SAAS,EAAE,MAAM,CAAC,kBAAkB;QACpC,QAAQ,EAAE,CAAC,CAAC,MAAM,CAAC,cAAc;KAClC,CAAC,CACH,CAAC;AACJ,CAAC;AAED,6EAA6E;AAC7E,MAAM,UAAU,mBAAmB;IACjC,OAAO,QAAQ,CAAC;AAClB,CAAC"}
|
|
1
|
+
{"version":3,"file":"europe-pmc-service.js","sourceRoot":"","sources":["../../../src/services/europe-pmc/europe-pmc-service.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;GAcG;AAEH,OAAO,EACL,aAAa,EACb,gBAAgB,EAChB,QAAQ,EACR,kBAAkB,EAClB,eAAe,GAChB,MAAM,+BAA+B,CAAC;AACvC,OAAO,EAAE,MAAM,EAAE,qBAAqB,EAAE,MAAM,8BAA8B,CAAC;AAC7E,mHAAmH;AACnH,OAAO,EAAE,SAAS,EAAE,YAAY,EAAE,MAAM,iBAAiB,CAAC;AAE1D,OAAO,EAAE,eAAe,EAAE,MAAM,2BAA2B,CAAC;AAC5D,OAAO,EAAE,WAAW,EAAE,MAAM,+BAA+B,CAAC;AAE5D,OAAO,EAAE,WAAW,EAAE,MAAM,wCAAwC,CAAC;AACrE,OAAO,EAAE,kBAAkB,EAAE,MAAM,iBAAiB,CAAC;AACrD,OAAO,EAAE,qBAAqB,EAAE,MAAM,oBAAoB,CAAC;AAc3D,sDAAsD;AACtD,MAAM,eAAe,GAAG,IAAI,GAAG,CAAmB;IAChD,gBAAgB,CAAC,kBAAkB;IACnC,gBAAgB,CAAC,OAAO;IACxB,gBAAgB,CAAC,WAAW;CAC7B,CAAC,CAAC;AAEH,MAAM,cAAc,GAAG,MAAM,CAAC;AAE9B,SAAS,cAAc,CAAC,EAAU,EAAE,MAAoB;IACtD,IAAI,CAAC,MAAM;QAAE,OAAO,IAAI,OAAO,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,UAAU,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC;IAC1D,IAAI,MAAM,CAAC,OAAO;QAAE,OAAO,OAAO,CAAC,MAAM,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC;IACzD,OAAO,IAAI,OAAO,CAAO,CAAC,OAAO,EAAE,MAAM,EAAE,EAAE;QAC3C,MAAM,OAAO,GAAG,GAAG,EAAE;YACnB,YAAY,CAAC,KAAK,CAAC,CAAC;YACpB,MAAM,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC;QACxB,CAAC,CAAC;QACF,MAAM,KAAK,GAAG,UAAU,CAAC,GAAG,EAAE;YAC5B,MAAM,CAAC,mBAAmB,CAAC,OAAO,EAAE,OAAO,CAAC,CAAC;YAC7C,OAAO,EAAE,CAAC;QACZ,CAAC,EAAE,EAAE,CAAC,CAAC;QACP,MAAM,CAAC,gBAAgB,CAAC,OAAO,EAAE,OAAO,EAAE,EAAE,IAAI,EAAE,IAAI,EAAE,CAAC,CAAC;IAC5D,CAAC,CAAC,CAAC;AACL,CAAC;AAED;;;;;;;GAOG;AACH,SAAS,iBAAiB,CAAC,EAAE,MAAM,EAAE,MAAM,EAAsB;IAC/D,OAAO,WAAW,MAAM,YAAY,MAAM,GAAG,CAAC;AAChD,CAAC;AAED;;;;;;;;;GASG;AACH,MAAM,OAAO,gBAAgB;IAIR,MAAM;IACN,KAAK;IACL,UAAU;IALZ,gBAAgB,CAAY;IAE7C,YACmB,MAA0B,EAC1B,KAA4B,EAC5B,UAAkB;sBAFlB,MAAM;qBACN,KAAK;0BACL,UAAU;QAE3B;;;;;WAKG;QACH,IAAI,CAAC,gBAAgB,GAAG,IAAI,SAAS,CAAC;YACpC,aAAa,EAAE,IAAI;YACnB,gBAAgB,EAAE,KAAK;YACvB,mBAAmB,EAAE,IAAI;YACzB,aAAa,EAAE,IAAI;YACnB,UAAU,EAAE,KAAK;YACjB,eAAe,EAAE,IAAI;YACrB,YAAY,EAAE,IAAI;SACnB,CAAC,CAAC;IACL,CAAC;IAED;;;OAGG;IACH,KAAK,CAAC,MAAM,CAAC,MAA6B;QACxC,MAAM,IAAI,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,OAAO,CACnC,GAAG,EAAE,CAAC,IAAI,CAAC,SAAS,CAAC,GAAG,EAAE,CAAC,IAAI,CAAC,MAAM,CAAC,MAAM,CAAC,MAAM,CAAC,EAAE,QAAQ,EAAE,MAAM,CAAC,MAAM,CAAC,EAC/E,QAAQ,EACR,MAAM,CAAC,MAAM,CACd,CAAC;QAEF,IAAI,MAA+B,CAAC;QACpC,IAAI,CAAC;YACH,MAAM,GAAG,IAAI,CAAC,KAAK,CAAC,IAAI,CAA4B,CAAC;QACvD,CAAC;QAAC,OAAO,KAAc,EAAE,CAAC;YACxB,MAAM,kBAAkB,CACtB,kDAAkD,EAClD;gBACE,MAAM,EAAE,4BAA4B;gBACpC,eAAe,EAAE,IAAI,CAAC,SAAS,CAAC,CAAC,EAAE,GAAG,CAAC;gBACvC,GAAG,WAAW,CAAC,4BAA4B,CAAC;aAC7C,EACD,EAAE,KAAK,EAAE,KAAK,EAAE,CACjB,CAAC;QACJ,CAAC;QAED;;;;WAIG;QACH,MAAM,MAAM,GAAG,OAAO,MAAM,CAAC,MAAM,KAAK,QAAQ,CAAC,CAAC,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC,SAAS,CAAC;QAC7E,IAAI,MAAM,EAAE,CAAC;YACX,MAAM,eAAe,CAAC,oCAAoC,MAAM,EAAE,EAAE;gBAClE,MAAM,EAAE,yBAAyB;gBACjC,WAAW,EAAE,MAAM,CAAC,OAAO;gBAC3B,UAAU,EAAE,MAAM;gBAClB,QAAQ,EAAE,EAAE,IAAI,EAAE,yBAAyB,MAAM,6BAA6B,EAAE;aACjF,CAAC,CAAC;QACL,CAAC;QAED;;;;;;;WAOG;QACH,IACE,MAAM,CAAC,QAAQ,KAAK,SAAS;YAC7B,MAAM,CAAC,OAAO,KAAK,SAAS;YAC5B,MAAM,CAAC,UAAU,KAAK,SAAS,EAC/B,CAAC;YACD,wEAAwE;YACxE,qEAAqE;YACrE,qEAAqE;YACrE,uEAAuE;YACvE,sBAAsB;YACtB,MAAM,EAAE,OAAO,EAAE,IAAI,EAAE,GAAG,MAAM,CAAC,IAAI;gBACnC,CAAC,CAAC;oBACE,OAAO,EAAE,kFAAkF,MAAM,CAAC,IAAI,IAAI;oBAC1G,IAAI,EAAE,qIAAqI;iBAC5I;gBACH,CAAC,CAAC;oBACE,OAAO,EAAE,6EAA6E;oBACtF,IAAI,EAAE,kEAAkE;iBACzE,CAAC;YACN,MAAM,eAAe,CAAC,OAAO,EAAE;gBAC7B,MAAM,EAAE,yBAAyB;gBACjC,GAAG,CAAC,MAAM,CAAC,IAAI,IAAI,EAAE,IAAI,EAAE,MAAM,CAAC,IAAI,EAAE,CAAC;gBACzC,GAAG,CAAC,MAAM,CAAC,UAAU,IAAI,MAAM,CAAC,UAAU,KAAK,GAAG,IAAI,EAAE,UAAU,EAAE,MAAM,CAAC,UAAU,EAAE,CAAC;gBACxF,eAAe,EAAE,IAAI,CAAC,SAAS,CAAC,CAAC,EAAE,GAAG,CAAC;gBACvC,QAAQ,EAAE,EAAE,IAAI,EAAE;aACnB,CAAC,CAAC;QACL,CAAC;QAED,MAAM,IAAI,GAAG,WAAW,CAAqB,MAAM,CAAC,UAAU,EAAE,MAAM,CAAC,CAAC;QACxE,MAAM,MAAM,GAAG,MAAM,CAAC,OAAO,EAAE,WAAW,IAAI,MAAM,CAAC,KAAK,CAAC;QAE3D,yEAAyE;QACzE,0EAA0E;QAC1E,wEAAwE;QACxE,2DAA2D;QAC3D,MAAM,UAAU,GAAG,MAAM,CAAC,UAAU,IAAI,GAAG,CAAC;QAC5C,MAAM,UAAU,GACd,MAAM,CAAC,cAAc,IAAI,MAAM,CAAC,cAAc,KAAK,UAAU;YAC3D,CAAC,CAAC,MAAM,CAAC,cAAc;YACvB,CAAC,CAAC,SAAS,CAAC;QAEhB,OAAO;YACL,IAAI;YACJ,QAAQ,EAAE,MAAM,CAAC,QAAQ,IAAI,IAAI,CAAC,MAAM;YACxC,GAAG,CAAC,UAAU,IAAI,EAAE,cAAc,EAAE,UAAU,EAAE,CAAC;YACjD,UAAU;YACV,KAAK,EAAE,MAAM;SACd,CAAC;IACJ,CAAC;IAED;;;;;;;;OAQG;IACH,KAAK,CAAC,YAAY,CAChB,IAAmC,EACnC,MAAoB;QAEpB,MAAM,MAAM,GAAG,MAAM,IAAI,CAAC,MAAM,CAAC;YAC/B,KAAK,EAAE,IAAI,CAAC,GAAG,CAAC,iBAAiB,CAAC,CAAC,IAAI,CAAC,MAAM,CAAC;YAC/C,UAAU,EAAE,MAAM;YAClB,QAAQ,EAAE,IAAI,CAAC,MAAM;YACrB,GAAG,CAAC,MAAM,IAAI,EAAE,MAAM,EAAE,CAAC;SAC1B,CAAC,CAAC;QACH,OAAO,MAAM,CAAC,IAAI,CAAC;IACrB,CAAC;IAED;;;;;;;OAOG;IACH,KAAK,CAAC,WAAW,CACf,MAAc,EACd,MAAuB,EACvB,MAAoB;QAEpB,MAAM,OAAO,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,OAAO,CACtC,GAAG,EAAE,CACH,IAAI,CAAC,SAAS,CACZ,GAAG,EAAE,CAAC,IAAI,CAAC,MAAM,CAAC,WAAW,CAAC,MAAM,EAAE,MAAM,CAAC,EAC7C,eAAe,MAAM,GAAG,EACxB,MAAM,CACP,EACH,eAAe,MAAM,GAAG,EACxB,MAAM,CACP,CAAC;QAEF,IAAI,OAAO,CAAC,IAAI,KAAK,eAAe,EAAE,CAAC;YACrC,OAAO,EAAE,IAAI,EAAE,eAAe,EAAE,MAAM,EAAE,OAAO,CAAC,MAAM,EAAE,CAAC;QAC3D,CAAC;QACD,OAAO,EAAE,IAAI,EAAE,OAAO,EAAE,GAAG,EAAE,OAAO,CAAC,GAAG,EAAE,MAAM,EAAE,MAAM,EAAE,CAAC;IAC7D,CAAC;IAED;;;;;;;;;OASG;IACH,SAAS,CACP,IAAY,EACZ,QAAgB,EAChB,IAAY,EACZ,MAAoB;QAEpB,OAAO,IAAI,CAAC,iBAAiB,CAC3B,GAAG,EAAE,CAAC,IAAI,CAAC,MAAM,CAAC,SAAS,CAAC,IAAI,EAAE,QAAQ,EAAE,IAAI,EAAE,MAAM,CAAC,EACzD,WAAW,EACX,IAAI,EACJ,CAAC,MAAM,EAAE,EAAE,CAAC,WAAW,CAAyB,MAAM,CAAC,YAAY,EAAE,QAAQ,CAAC,EAC9E,MAAM,CACP,CAAC;IACJ,CAAC;IAED;;;;;;;;;OASG;IACH,UAAU,CACR,IAAY,EACZ,QAAgB,EAChB,IAAY,EACZ,MAAoB;QAEpB,OAAO,IAAI,CAAC,iBAAiB,CAC3B,GAAG,EAAE,CAAC,IAAI,CAAC,MAAM,CAAC,UAAU,CAAC,IAAI,EAAE,QAAQ,EAAE,IAAI,EAAE,MAAM,CAAC,EAC1D,YAAY,EACZ,IAAI,EACJ,CAAC,MAAM,EAAE,EAAE,CAAC,WAAW,CAAyB,MAAM,CAAC,aAAa,EAAE,SAAS,CAAC,EAChF,MAAM,CACP,CAAC;IACJ,CAAC;IAED;;;OAGG;IACK,KAAK,CAAC,iBAAiB,CAC7B,KAA4B,EAC5B,IAAY,EACZ,IAAY,EACZ,cAA4E,EAC5E,MAAoB;QAEpB,MAAM,IAAI,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,OAAO,CACnC,GAAG,EAAE,CAAC,IAAI,CAAC,SAAS,CAAC,KAAK,EAAE,GAAG,IAAI,IAAI,IAAI,GAAG,EAAE,MAAM,CAAC,EACvD,GAAG,IAAI,IAAI,IAAI,GAAG,EAClB,MAAM,CACP,CAAC;QAEF,IAAI,MAA8B,CAAC;QACnC,IAAI,CAAC;YACH,MAAM,GAAG,IAAI,CAAC,KAAK,CAAC,IAAI,CAA2B,CAAC;QACtD,CAAC;QAAC,OAAO,KAAc,EAAE,CAAC;YACxB,MAAM,kBAAkB,CACtB,8BAA8B,IAAI,iBAAiB,EACnD;gBACE,MAAM,EAAE,4BAA4B;gBACpC,eAAe,EAAE,IAAI,CAAC,SAAS,CAAC,CAAC,EAAE,GAAG,CAAC;gBACvC,GAAG,WAAW,CAAC,4BAA4B,CAAC;aAC7C,EACD,EAAE,KAAK,EAAE,KAAK,EAAE,CACjB,CAAC;QACJ,CAAC;QAED,MAAM,OAAO,GAAG,cAAc,CAAC,MAAM,CAAC,CAAC;QACvC,MAAM,KAAK,GAAa,EAAE,CAAC;QAC3B,KAAK,MAAM,GAAG,IAAI,OAAO,EAAE,CAAC;YAC1B,0EAA0E;YAC1E,2EAA2E;YAC3E,6EAA6E;YAC7E,MAAM,SAAS,GAAG,GAAG,CAAC,IAAI,IAAI,CAAC,GAAG,CAAC,MAAM,KAAK,KAAK,CAAC,CAAC,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC;YAC1E,MAAM,CAAC,GAAG,SAAS,EAAE,IAAI,EAAE,CAAC;YAC5B,IAAI,CAAC,IAAI,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC;gBAAE,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;QAC1C,CAAC;QAED,OAAO;YACL,KAAK;YACL,UAAU,EAAE,MAAM,CAAC,QAAQ,IAAI,OAAO,CAAC,MAAM;SAC9C,CAAC;IACJ,CAAC;IAED;;;;;;;;OAQG;IACH,gBAAgB,CAAC,GAAW;QAC1B,MAAM,gBAAgB,GAAG,YAAY,CAAC,QAAQ,CAAC,GAAG,CAAC,OAAO,CAAC,mBAAmB,EAAE,EAAE,CAAC,CAAC,CAAC;QACrF,IAAI,gBAAgB,KAAK,IAAI,EAAE,CAAC;YAC9B,MAAM,kBAAkB,CAAC,uCAAuC,EAAE;gBAChE,MAAM,EAAE,4BAA4B;gBACpC,eAAe,EAAE,GAAG,CAAC,SAAS,CAAC,CAAC,EAAE,GAAG,CAAC;gBACtC,GAAG,WAAW,CAAC,4BAA4B,CAAC;aAC7C,CAAC,CAAC;QACL,CAAC;QAED,IAAI,MAAe,CAAC;QACpB,IAAI,CAAC;YACH,MAAM,GAAG,IAAI,CAAC,gBAAgB,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC;QAC5C,CAAC;QAAC,OAAO,KAAc,EAAE,CAAC;YACxB,MAAM,WAAW,GAAG,KAAK,YAAY,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC;YAC3E,MAAM,kBAAkB,CACtB,oDAAoD,WAAW,EAAE,EACjE;gBACE,MAAM,EAAE,4BAA4B;gBACpC,WAAW;gBACX,eAAe,EAAE,GAAG,CAAC,SAAS,CAAC,CAAC,EAAE,GAAG,CAAC;gBACtC,GAAG,WAAW,CAAC,4BAA4B,CAAC;aAC7C,EACD,EAAE,KAAK,EAAE,KAAK,EAAE,CACjB,CAAC;QACJ,CAAC;QAED,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,MAAM,CAAC;YAAE,OAAO;QACnC,MAAM,KAAK,GAAG,MAAsB,CAAC;QACrC,OAAO,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,SAAS,IAAI,CAAC,CAAC,CAAC;IAC3C,CAAC;IAED;;;;OAIG;IACK,KAAK,CAAC,SAAS,CACrB,OAAyB,EACzB,KAAa,EACb,MAAoB;QAEpB,KAAK,IAAI,OAAO,GAAG,CAAC,EAAE,OAAO,IAAI,IAAI,CAAC,UAAU,EAAE,OAAO,EAAE,EAAE,CAAC;YAC5D,IAAI,MAAM,EAAE,OAAO;gBAAE,MAAM,MAAM,CAAC,MAAM,CAAC;YAEzC,IAAI,CAAC;gBACH,OAAO,MAAM,OAAO,EAAE,CAAC;YACzB,CAAC;YAAC,OAAO,KAAc,EAAE,CAAC;gBACxB,IAAI,MAAM,EAAE,OAAO;oBAAE,MAAM,MAAM,CAAC,MAAM,CAAC;gBACzC,IAAI,CAAC,CAAC,KAAK,YAAY,QAAQ,CAAC;oBAAE,MAAM,KAAK,CAAC;gBAC9C,IAAI,CAAC,eAAe,CAAC,GAAG,CAAC,KAAK,CAAC,IAAI,CAAC;oBAAE,MAAM,KAAK,CAAC;gBAElD,IAAI,OAAO,GAAG,IAAI,CAAC,UAAU,EAAE,CAAC;oBAC9B,MAAM,SAAS,GAAG,IAAI,CAAC,GAAG,CAAC,IAAI,GAAG,CAAC,IAAI,OAAO,EAAE,cAAc,CAAC,CAAC;oBAChE,MAAM,MAAM,GAAG,SAAS,GAAG,CAAC,IAAI,GAAG,GAAG,GAAG,IAAI,CAAC,MAAM,EAAE,CAAC,CAAC;oBACxD,MAAM,UAAU,GAAG,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC;oBACtC,MAAM,CAAC,OAAO,CACZ,cAAc,KAAK,sBAAsB,OAAO,GAAG,CAAC,IAAI,IAAI,CAAC,UAAU,QAAQ,UAAU,KAAK,EAC9F,qBAAqB,CAAC,oBAAoB,CAAC;wBACzC,SAAS,EAAE,gBAAgB;wBAC3B,KAAK;wBACL,OAAO,EAAE,OAAO,GAAG,CAAC;wBACpB,UAAU;qBACX,CAAC,CACH,CAAC;oBACF,MAAM,cAAc,CAAC,UAAU,EAAE,MAAM,CAAC,CAAC;oBACzC,SAAS;gBACX,CAAC;gBAED,MAAM,QAAQ,GAAG,IAAI,CAAC,UAAU,GAAG,CAAC,CAAC;gBACrC,MAAM,GAAG,GAAG,KAAK,YAAY,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC;gBACnE,MAAM,IAAI,QAAQ,CAChB,KAAK,CAAC,IAAI,EACV,GAAG,GAAG,kBAAkB,QAAQ,YAAY,EAC5C;oBACE,MAAM,EAAE,uBAAuB;oBAC/B,KAAK;oBACL,QAAQ;oBACR,GAAG,WAAW,CAAC,uBAAuB,CAAC;iBACxC,EACD,EAAE,KAAK,EAAE,KAAK,EAAE,CACjB,CAAC;YACJ,CAAC;QACH,CAAC;QAED,MAAM,aAAa,CAAC,8CAA8C,EAAE;YAClE,MAAM,EAAE,uBAAuB;YAC/B,KAAK;YACL,GAAG,WAAW,CAAC,uBAAuB,CAAC;SACxC,CAAC,CAAC;IACL,CAAC;CACF;AAED,+EAA+E;AAE/E,IAAI,QAAsC,CAAC;AAE3C;;;;GAIG;AACH,MAAM,UAAU,oBAAoB;IAClC,MAAM,MAAM,GAAG,eAAe,EAAE,CAAC;IACjC,IAAI,CAAC,MAAM,CAAC,gBAAgB,EAAE,CAAC;QAC7B,MAAM,CAAC,IAAI,CAAC,wDAAwD,CAAC,CAAC;QACtE,OAAO;IACT,CAAC;IAED,MAAM,MAAM,GAAG,IAAI,kBAAkB,CAAC;QACpC,SAAS,EAAE,MAAM,CAAC,kBAAkB;QACpC,GAAG,CAAC,MAAM,CAAC,cAAc,IAAI,EAAE,KAAK,EAAE,MAAM,CAAC,cAAc,EAAE,CAAC;KAC/D,CAAC,CAAC;IACH,MAAM,KAAK,GAAG,IAAI,qBAAqB,CAAC,MAAM,CAAC,uBAAuB,CAAC,CAAC;IACxE,QAAQ,GAAG,IAAI,gBAAgB,CAAC,MAAM,EAAE,KAAK,EAAE,MAAM,CAAC,mBAAmB,CAAC,CAAC;IAC3E,MAAM,CAAC,IAAI,CACT,iCAAiC,EACjC,qBAAqB,CAAC,oBAAoB,CAAC;QACzC,SAAS,EAAE,eAAe;QAC1B,cAAc,EAAE,MAAM,CAAC,uBAAuB;QAC9C,UAAU,EAAE,MAAM,CAAC,mBAAmB;QACtC,SAAS,EAAE,MAAM,CAAC,kBAAkB;QACpC,QAAQ,EAAE,CAAC,CAAC,MAAM,CAAC,cAAc;KAClC,CAAC,CACH,CAAC;AACJ,CAAC;AAED,6EAA6E;AAC7E,MAAM,UAAU,mBAAmB;IACjC,OAAO,QAAQ,CAAC;AAClB,CAAC"}
|
|
@@ -114,6 +114,15 @@ export interface EuropePmcSearchParams {
|
|
|
114
114
|
/** Allowed sources, comma-joined into the query as `(SRC:"MED" OR ...)`. */
|
|
115
115
|
sources?: readonly EuropePmcSource[];
|
|
116
116
|
}
|
|
117
|
+
/**
|
|
118
|
+
* Address of one Europe PMC record: the corpus it lives in plus EPMC's own
|
|
119
|
+
* identifier within that corpus. The pair is the only identifier many PPR,
|
|
120
|
+
* PAT, and AGR records carry — they frequently have no PMID and no DOI.
|
|
121
|
+
*/
|
|
122
|
+
export interface EuropePmcRecordRef {
|
|
123
|
+
epmcId: string;
|
|
124
|
+
source: EuropePmcSource;
|
|
125
|
+
}
|
|
117
126
|
/** Outcome of a fullTextXML lookup. */
|
|
118
127
|
export type EuropePmcFullTextResult = {
|
|
119
128
|
kind: 'found';
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"types.d.ts","sourceRoot":"","sources":["../../../src/services/europe-pmc/types.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAEH,qDAAqD;AACrD,eAAO,MAAM,kBAAkB,qDAAqD,CAAC;AAErF;;;;;GAKG;AACH,MAAM,MAAM,eAAe,GAAG,KAAK,GAAG,KAAK,GAAG,KAAK,GAAG,KAAK,GAAG,KAAK,GAAG,KAAK,GAAG,KAAK,GAAG,KAAK,GAAG,KAAK,CAAC;AAEpG,2DAA2D;AAC3D,eAAO,MAAM,yBAAyB,YAAI,KAAK,EAAE,KAAK,EAAE,KAAK,CAAU,CAAC;AACxE,eAAO,MAAM,qBAAqB,YAAI,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,CAAU,CAAC;AAElF;;;;;GAKG;AACH,MAAM,WAAW,kBAAkB;IACjC,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,mBAAmB,CAAC,EAAE,OAAO,CAAC;IAC9B,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,GAAG,CAAC,EAAE,MAAM,CAAC;IACb,oDAAoD;IACpD,cAAc,CAAC,EAAE,MAAM,CAAC;IACxB,wDAAwD;IACxD,oBAAoB,CAAC,EAAE,MAAM,CAAC;IAC9B,OAAO,CAAC,EAAE,GAAG,GAAG,GAAG,CAAC;IACpB,MAAM,CAAC,EAAE,GAAG,GAAG,GAAG,CAAC;IACnB,oFAAoF;IACpF,iBAAiB,CAAC,EAAE,GAAG,GAAG,GAAG,CAAC;IAC9B,6EAA6E;IAC7E,EAAE,EAAE,MAAM,CAAC;IACX,MAAM,CAAC,EAAE,GAAG,GAAG,GAAG,CAAC;IACnB,KAAK,CAAC,EAAE,GAAG,GAAG,GAAG,CAAC;IAClB,YAAY,CAAC,EAAE,GAAG,GAAG,GAAG,CAAC;IACzB,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,aAAa,CAAC,EAAE,MAAM,CAAC;IACvB,6DAA6D;IAC7D,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,MAAM,EAAE,eAAe,CAAC;IACxB,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,CAAC,KAAK,EAAE,MAAM,GAAG,OAAO,CAAC;CAC1B;AAED,+DAA+D;AAC/D,MAAM,WAAW,mBAAmB;IAClC,MAAM,CAAC,EAAE,kBAAkB,EAAE,GAAG,kBAAkB,CAAC;CACpD;AAED;;;;GAIG;AACH,MAAM,WAAW,uBAAuB;IACtC,mEAAmE;IACnE,OAAO,CAAC,EAAE,MAAM,GAAG,MAAM,CAAC;IAC1B,sEAAsE;IACtE,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,+CAA+C;IAC/C,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,gEAAgE;IAChE,cAAc,CAAC,EAAE,MAAM,CAAC;IACxB,mEAAmE;IACnE,OAAO,CAAC,EAAE;QACR,WAAW,CAAC,EAAE,MAAM,CAAC;QACrB,UAAU,CAAC,EAAE,MAAM,CAAC;QACpB,UAAU,CAAC,EAAE,MAAM,CAAC;QACpB,QAAQ,CAAC,EAAE,MAAM,CAAC;QAClB,IAAI,CAAC,EAAE,MAAM,CAAC;QACd,CAAC,KAAK,EAAE,MAAM,GAAG,OAAO,CAAC;KAC1B,CAAC;IACF,UAAU,CAAC,EAAE,mBAAmB,CAAC;IACjC,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,CAAC,KAAK,EAAE,MAAM,GAAG,OAAO,CAAC;CAC1B;AAED,8DAA8D;AAC9D,MAAM,WAAW,qBAAqB;IACpC,4EAA4E;IAC5E,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,QAAQ,EAAE,MAAM,CAAC;IACjB,IAAI,EAAE,kBAAkB,EAAE,CAAC;IAC3B,uEAAuE;IACvE,cAAc,CAAC,EAAE,MAAM,CAAC;IACxB,KAAK,EAAE,MAAM,CAAC;CACf;AAED,uDAAuD;AACvD,MAAM,WAAW,qBAAqB;IACpC,yEAAyE;IACzE,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,+BAA+B;IAC/B,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,KAAK,EAAE,MAAM,CAAC;IACd,2EAA2E;IAC3E,UAAU,CAAC,EAAE,MAAM,GAAG,MAAM,GAAG,QAAQ,CAAC;IACxC,MAAM,CAAC,EAAE,WAAW,CAAC;IACrB,oDAAoD;IACpD,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,4EAA4E;IAC5E,OAAO,CAAC,EAAE,SAAS,eAAe,EAAE,CAAC;CACtC;AAED,uCAAuC;AACvC,MAAM,MAAM,uBAAuB,GAC/B;IAAE,IAAI,EAAE,OAAO,CAAC;IAAC,GAAG,EAAE,MAAM,CAAC;IAAC,MAAM,EAAE,MAAM,CAAC;IAAC,MAAM,EAAE,eAAe,CAAA;CAAE,GACvE;IAAE,IAAI,EAAE,eAAe,CAAC;IAAC,MAAM,EAAE,MAAM,CAAA;CAAE,CAAC;AAE9C;;;GAGG;AACH,MAAM,WAAW,sBAAsB;IACrC,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,GAAG,CAAC,EAAE,MAAM,CAAC;IACb,EAAE,EAAE,MAAM,CAAC;IACX,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,CAAC,GAAG,EAAE,MAAM,GAAG,OAAO,CAAC;CACxB;AAED,0EAA0E;AAC1E,MAAM,WAAW,sBAAsB;IACrC,YAAY,CAAC,EAAE;QAAE,QAAQ,CAAC,EAAE,sBAAsB,EAAE,GAAG,sBAAsB,CAAA;KAAE,CAAC;IAChF,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,aAAa,CAAC,EAAE;QAAE,SAAS,CAAC,EAAE,sBAAsB,EAAE,GAAG,sBAAsB,CAAA;KAAE,CAAC;CACnF;AAED,0DAA0D;AAC1D,MAAM,WAAW,sBAAsB;IACrC,KAAK,EAAE,MAAM,EAAE,CAAC;IAChB,UAAU,EAAE,MAAM,CAAC;CACpB"}
|
|
1
|
+
{"version":3,"file":"types.d.ts","sourceRoot":"","sources":["../../../src/services/europe-pmc/types.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAEH,qDAAqD;AACrD,eAAO,MAAM,kBAAkB,qDAAqD,CAAC;AAErF;;;;;GAKG;AACH,MAAM,MAAM,eAAe,GAAG,KAAK,GAAG,KAAK,GAAG,KAAK,GAAG,KAAK,GAAG,KAAK,GAAG,KAAK,GAAG,KAAK,GAAG,KAAK,GAAG,KAAK,CAAC;AAEpG,2DAA2D;AAC3D,eAAO,MAAM,yBAAyB,YAAI,KAAK,EAAE,KAAK,EAAE,KAAK,CAAU,CAAC;AACxE,eAAO,MAAM,qBAAqB,YAAI,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,CAAU,CAAC;AAElF;;;;;GAKG;AACH,MAAM,WAAW,kBAAkB;IACjC,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,mBAAmB,CAAC,EAAE,OAAO,CAAC;IAC9B,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,GAAG,CAAC,EAAE,MAAM,CAAC;IACb,oDAAoD;IACpD,cAAc,CAAC,EAAE,MAAM,CAAC;IACxB,wDAAwD;IACxD,oBAAoB,CAAC,EAAE,MAAM,CAAC;IAC9B,OAAO,CAAC,EAAE,GAAG,GAAG,GAAG,CAAC;IACpB,MAAM,CAAC,EAAE,GAAG,GAAG,GAAG,CAAC;IACnB,oFAAoF;IACpF,iBAAiB,CAAC,EAAE,GAAG,GAAG,GAAG,CAAC;IAC9B,6EAA6E;IAC7E,EAAE,EAAE,MAAM,CAAC;IACX,MAAM,CAAC,EAAE,GAAG,GAAG,GAAG,CAAC;IACnB,KAAK,CAAC,EAAE,GAAG,GAAG,GAAG,CAAC;IAClB,YAAY,CAAC,EAAE,GAAG,GAAG,GAAG,CAAC;IACzB,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,aAAa,CAAC,EAAE,MAAM,CAAC;IACvB,6DAA6D;IAC7D,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,MAAM,EAAE,eAAe,CAAC;IACxB,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,CAAC,KAAK,EAAE,MAAM,GAAG,OAAO,CAAC;CAC1B;AAED,+DAA+D;AAC/D,MAAM,WAAW,mBAAmB;IAClC,MAAM,CAAC,EAAE,kBAAkB,EAAE,GAAG,kBAAkB,CAAC;CACpD;AAED;;;;GAIG;AACH,MAAM,WAAW,uBAAuB;IACtC,mEAAmE;IACnE,OAAO,CAAC,EAAE,MAAM,GAAG,MAAM,CAAC;IAC1B,sEAAsE;IACtE,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,+CAA+C;IAC/C,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,gEAAgE;IAChE,cAAc,CAAC,EAAE,MAAM,CAAC;IACxB,mEAAmE;IACnE,OAAO,CAAC,EAAE;QACR,WAAW,CAAC,EAAE,MAAM,CAAC;QACrB,UAAU,CAAC,EAAE,MAAM,CAAC;QACpB,UAAU,CAAC,EAAE,MAAM,CAAC;QACpB,QAAQ,CAAC,EAAE,MAAM,CAAC;QAClB,IAAI,CAAC,EAAE,MAAM,CAAC;QACd,CAAC,KAAK,EAAE,MAAM,GAAG,OAAO,CAAC;KAC1B,CAAC;IACF,UAAU,CAAC,EAAE,mBAAmB,CAAC;IACjC,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,CAAC,KAAK,EAAE,MAAM,GAAG,OAAO,CAAC;CAC1B;AAED,8DAA8D;AAC9D,MAAM,WAAW,qBAAqB;IACpC,4EAA4E;IAC5E,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,QAAQ,EAAE,MAAM,CAAC;IACjB,IAAI,EAAE,kBAAkB,EAAE,CAAC;IAC3B,uEAAuE;IACvE,cAAc,CAAC,EAAE,MAAM,CAAC;IACxB,KAAK,EAAE,MAAM,CAAC;CACf;AAED,uDAAuD;AACvD,MAAM,WAAW,qBAAqB;IACpC,yEAAyE;IACzE,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,+BAA+B;IAC/B,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,KAAK,EAAE,MAAM,CAAC;IACd,2EAA2E;IAC3E,UAAU,CAAC,EAAE,MAAM,GAAG,MAAM,GAAG,QAAQ,CAAC;IACxC,MAAM,CAAC,EAAE,WAAW,CAAC;IACrB,oDAAoD;IACpD,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,4EAA4E;IAC5E,OAAO,CAAC,EAAE,SAAS,eAAe,EAAE,CAAC;CACtC;AAED;;;;GAIG;AACH,MAAM,WAAW,kBAAkB;IACjC,MAAM,EAAE,MAAM,CAAC;IACf,MAAM,EAAE,eAAe,CAAC;CACzB;AAED,uCAAuC;AACvC,MAAM,MAAM,uBAAuB,GAC/B;IAAE,IAAI,EAAE,OAAO,CAAC;IAAC,GAAG,EAAE,MAAM,CAAC;IAAC,MAAM,EAAE,MAAM,CAAC;IAAC,MAAM,EAAE,eAAe,CAAA;CAAE,GACvE;IAAE,IAAI,EAAE,eAAe,CAAC;IAAC,MAAM,EAAE,MAAM,CAAA;CAAE,CAAC;AAE9C;;;GAGG;AACH,MAAM,WAAW,sBAAsB;IACrC,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,GAAG,CAAC,EAAE,MAAM,CAAC;IACb,EAAE,EAAE,MAAM,CAAC;IACX,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,CAAC,GAAG,EAAE,MAAM,GAAG,OAAO,CAAC;CACxB;AAED,0EAA0E;AAC1E,MAAM,WAAW,sBAAsB;IACrC,YAAY,CAAC,EAAE;QAAE,QAAQ,CAAC,EAAE,sBAAsB,EAAE,GAAG,sBAAsB,CAAA;KAAE,CAAC;IAChF,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,aAAa,CAAC,EAAE;QAAE,SAAS,CAAC,EAAE,sBAAsB,EAAE,GAAG,sBAAsB,CAAA;KAAE,CAAC;CACnF;AAED,0DAA0D;AAC1D,MAAM,WAAW,sBAAsB;IACrC,KAAK,EAAE,MAAM,EAAE,CAAC;IAChB,UAAU,EAAE,MAAM,CAAC;CACpB"}
|
|
@@ -10,13 +10,27 @@ export interface OpenAlexApiClientConfig {
|
|
|
10
10
|
email?: string;
|
|
11
11
|
timeoutMs: number;
|
|
12
12
|
}
|
|
13
|
-
/**
|
|
13
|
+
/**
|
|
14
|
+
* Low-level HTTP client for OpenAlex. Single-attempt — retries upstream.
|
|
15
|
+
*
|
|
16
|
+
* Every method here resolves only on HTTP 2xx: `fetchWithTimeout` throws a
|
|
17
|
+
* status-mapped `McpError` for any non-2xx rather than returning the failing
|
|
18
|
+
* `Response`, so a `!response.ok` check after the call can never run. A status
|
|
19
|
+
* that needs graceful handling is converted in the catch block by inspecting
|
|
20
|
+
* `error.code` — see `getWorkByPmid`'s 404 → `null`. (#90)
|
|
21
|
+
*/
|
|
14
22
|
export declare class OpenAlexApiClient {
|
|
15
23
|
private readonly config;
|
|
16
24
|
constructor(config: OpenAlexApiClientConfig);
|
|
17
25
|
/**
|
|
18
26
|
* Fetch a single work by PMID. Returns the work record (with related_works
|
|
19
27
|
* and referenced_works populated) or null when the PMID is unknown.
|
|
28
|
+
*
|
|
29
|
+
* `fetchWithTimeout` throws a status-mapped `McpError` on any non-2xx rather
|
|
30
|
+
* than resolving with the `Response` (`expectedStatuses` only lowers the log
|
|
31
|
+
* severity), so a PMID OpenAlex doesn't index arrives here as
|
|
32
|
+
* `McpError(NotFound)` and must be converted in the catch block. Every other
|
|
33
|
+
* failure keeps throwing. (#90)
|
|
20
34
|
*/
|
|
21
35
|
getWorkByPmid(pmid: string, signal?: AbortSignal): Promise<OpenAlexWork | null>;
|
|
22
36
|
/**
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"api-client.d.ts","sourceRoot":"","sources":["../../../src/services/openalex/api-client.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;
|
|
1
|
+
{"version":3,"file":"api-client.d.ts","sourceRoot":"","sources":["../../../src/services/openalex/api-client.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAMH,OAAO,EAAqB,KAAK,YAAY,EAA8B,MAAM,YAAY,CAAC;AAI9F,MAAM,WAAW,uBAAuB;IACtC,sEAAsE;IACtE,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,SAAS,EAAE,MAAM,CAAC;CACnB;AAED;;;;;;;;GAQG;AACH,qBAAa,iBAAiB;IAChB,OAAO,CAAC,QAAQ,CAAC,MAAM;IAAnC,YAA6B,MAAM,EAAE,uBAAuB,EAAI;IAEhE;;;;;;;;;OASG;IACG,aAAa,CAAC,IAAI,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,WAAW,GAAG,OAAO,CAAC,YAAY,GAAG,IAAI,CAAC,CA0CpF;IAED;;;;OAIG;IACH,mBAAmB,CAAC,KAAK,EAAE,MAAM,EAAE,EAAE,MAAM,CAAC,EAAE,WAAW,GAAG,OAAO,CAAC,YAAY,EAAE,CAAC,CAiBlF;IAED;;;OAGG;IACG,UAAU,CACd,IAAI,EAAE,MAAM,EACZ,OAAO,EAAE,MAAM,EACf,MAAM,CAAC,EAAE,WAAW,GACnB,OAAO,CAAC;QAAE,KAAK,EAAE,YAAY,EAAE,CAAC;QAAC,UAAU,EAAE,MAAM,CAAA;KAAE,CAAC,CA6DxD;IAED,gEAAgE;YAClD,cAAc;CAqC7B"}
|