@cyanheads/pubmed-mcp-server 2.9.8 → 2.9.9
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/AGENTS.md +30 -8
- package/CLAUDE.md +30 -8
- package/Dockerfile +13 -7
- package/README.md +1 -1
- package/dist/mcp-server/prompts/definitions/research-plan.prompt.d.ts +1 -1
- package/dist/mcp-server/tools/definitions/convert-ids.tool.d.ts +17 -17
- package/dist/mcp-server/tools/definitions/fetch-articles.tool.d.ts +18 -18
- package/dist/mcp-server/tools/definitions/fetch-articles.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/fetch-fulltext.tool.d.ts +40 -40
- package/dist/mcp-server/tools/definitions/find-related.tool.d.ts +33 -33
- package/dist/mcp-server/tools/definitions/format-citations.tool.d.ts +17 -17
- package/dist/mcp-server/tools/definitions/format-citations.tool.js +1 -1
- package/dist/mcp-server/tools/definitions/format-citations.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/lookup-citation.tool.d.ts +16 -16
- package/dist/mcp-server/tools/definitions/lookup-citation.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/lookup-citation.tool.js +9 -12
- package/dist/mcp-server/tools/definitions/lookup-citation.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/lookup-mesh.tool.d.ts +20 -16
- package/dist/mcp-server/tools/definitions/lookup-mesh.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/lookup-mesh.tool.js +73 -22
- package/dist/mcp-server/tools/definitions/lookup-mesh.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/pubmed-europepmc-search.tool.d.ts +18 -18
- package/dist/mcp-server/tools/definitions/pubmed-europepmc-search.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/search-articles.tool.d.ts +22 -22
- package/dist/mcp-server/tools/definitions/spell-check.tool.d.ts +15 -15
- package/dist/mcp-server/tools/definitions/spell-check.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/spell-check.tool.js +2 -2
- package/dist/mcp-server/tools/definitions/spell-check.tool.js.map +1 -1
- package/dist/services/error-contracts.d.ts +33 -33
- package/dist/services/error-contracts.d.ts.map +1 -1
- package/dist/services/europe-pmc/api-client.d.ts.map +1 -1
- package/dist/services/europe-pmc/api-client.js +1 -0
- package/dist/services/europe-pmc/api-client.js.map +1 -1
- package/dist/services/europe-pmc/europe-pmc-service.d.ts.map +1 -1
- package/dist/services/europe-pmc/europe-pmc-service.js.map +1 -1
- package/dist/services/europe-pmc/request-queue.d.ts.map +1 -1
- package/dist/services/europe-pmc/request-queue.js.map +1 -1
- package/dist/services/europe-pmc/types.d.ts +2 -2
- package/dist/services/europe-pmc/types.d.ts.map +1 -1
- package/dist/services/ncbi/api-client.d.ts.map +1 -1
- package/dist/services/ncbi/api-client.js.map +1 -1
- package/dist/services/ncbi/ncbi-service.d.ts.map +1 -1
- package/dist/services/ncbi/ncbi-service.js.map +1 -1
- package/dist/services/ncbi/parsing/article-parser.js.map +1 -1
- package/dist/services/ncbi/parsing/esummary-parser.d.ts.map +1 -1
- package/dist/services/ncbi/parsing/esummary-parser.js +3 -0
- package/dist/services/ncbi/parsing/esummary-parser.js.map +1 -1
- package/dist/services/ncbi/parsing/xml-helpers.js.map +1 -1
- package/dist/services/ncbi/request-queue.d.ts.map +1 -1
- package/dist/services/ncbi/request-queue.js.map +1 -1
- package/dist/services/ncbi/response-handler.d.ts.map +1 -1
- package/dist/services/ncbi/types.d.ts +6 -0
- package/dist/services/ncbi/types.d.ts.map +1 -1
- package/dist/services/openalex/api-client.d.ts.map +1 -1
- package/dist/services/openalex/api-client.js +1 -0
- package/dist/services/openalex/api-client.js.map +1 -1
- package/dist/services/openalex/openalex-service.d.ts.map +1 -1
- package/dist/services/openalex/openalex-service.js.map +1 -1
- package/dist/services/unpaywall/unpaywall-service.d.ts.map +1 -1
- package/dist/services/unpaywall/unpaywall-service.js +1 -0
- package/dist/services/unpaywall/unpaywall-service.js.map +1 -1
- package/package.json +24 -17
- package/server.json +3 -3
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{"version":3,"file":"request-queue.d.ts","sourceRoot":"","sources":["../../../src/services/europe-pmc/request-queue.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAeH;;;;;;;;;;;;GAYG;AACH,qBAAa,qBAAqB;IAChC,OAAO,CAAC,QAAQ,CAAC,OAAO,CAAgB;IACxC,OAAO,CAAC,QAAQ,CAAC,aAAa,CAAS;IACvC,OAAO,CAAC,QAAQ,CAAC,aAAa,CAAS;IACvC,OAAO,CAAC,QAAQ,CAAK;IACrB,OAAO,CAAC,aAAa,CAAK;IAC1B,OAAO,CAAC,iBAAiB,CAA4C;
|
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1
|
+
{"version":3,"file":"request-queue.d.ts","sourceRoot":"","sources":["../../../src/services/europe-pmc/request-queue.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAeH;;;;;;;;;;;;GAYG;AACH,qBAAa,qBAAqB;IAChC,OAAO,CAAC,QAAQ,CAAC,OAAO,CAAgB;IACxC,OAAO,CAAC,QAAQ,CAAC,aAAa,CAAS;IACvC,OAAO,CAAC,QAAQ,CAAC,aAAa,CAAS;IACvC,OAAO,CAAC,QAAQ,CAAK;IACrB,OAAO,CAAC,aAAa,CAAK;IAC1B,OAAO,CAAC,iBAAiB,CAA4C;IAErE,YAAY,aAAa,EAAE,MAAM,EAAE,aAAa,GAAE,MAA+B,EAGhF;IAED,OAAO,CAAC,CAAC,EAAE,IAAI,EAAE,MAAM,OAAO,CAAC,CAAC,CAAC,EAAE,KAAK,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,WAAW,GAAG,OAAO,CAAC,CAAC,CAAC,CA6BlF;IAED,OAAO,CAAC,WAAW;CAoDpB"}
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"request-queue.js","sourceRoot":"","sources":["../../../src/services/europe-pmc/request-queue.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EAAE,MAAM,EAAE,qBAAqB,EAAE,MAAM,8BAA8B,CAAC;AAE7E,MAAM,sBAAsB,GAAG,CAAC,CAAC;AAWjC;;;;;;;;;;;;GAYG;AACH,MAAM,OAAO,qBAAqB;IACf,OAAO,GAAa,EAAE,CAAC;IACvB,aAAa,CAAS;IACtB,aAAa,CAAS;IAC/B,QAAQ,GAAG,CAAC,CAAC;IACb,aAAa,GAAG,CAAC,CAAC;IAClB,iBAAiB,CAA4C;IAErE,YAAY,aAAqB,EAAE,
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1
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+
{"version":3,"file":"request-queue.js","sourceRoot":"","sources":["../../../src/services/europe-pmc/request-queue.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EAAE,MAAM,EAAE,qBAAqB,EAAE,MAAM,8BAA8B,CAAC;AAE7E,MAAM,sBAAsB,GAAG,CAAC,CAAC;AAWjC;;;;;;;;;;;;GAYG;AACH,MAAM,OAAO,qBAAqB;IACf,OAAO,GAAa,EAAE,CAAC;IACvB,aAAa,CAAS;IACtB,aAAa,CAAS;IAC/B,QAAQ,GAAG,CAAC,CAAC;IACb,aAAa,GAAG,CAAC,CAAC;IAClB,iBAAiB,CAA4C;IAErE,YAAY,aAAqB,EAAE,aAAa,GAAW,sBAAsB;QAC/E,IAAI,CAAC,aAAa,GAAG,aAAa,CAAC;QACnC,IAAI,CAAC,aAAa,GAAG,aAAa,CAAC;IACrC,CAAC;IAED,OAAO,CAAI,IAAsB,EAAE,KAAa,EAAE,MAAoB;QACpE,OAAO,IAAI,OAAO,CAAI,CAAC,OAAO,EAAE,MAAM,EAAE,EAAE;YACxC,IAAI,MAAM,EAAE,OAAO,EAAE,CAAC;gBACpB,MAAM,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC;gBACtB,OAAO;YACT,CAAC;YAED,MAAM,MAAM,GAAc;gBACxB,OAAO;gBACP,MAAM;gBACN,IAAI;gBACJ,KAAK;gBACL,GAAG,CAAC,MAAM,IAAI,EAAE,MAAM,EAAE,CAAC;aAC1B,CAAC;YAEF,IAAI,MAAM,EAAE,CAAC;gBACX,MAAM,OAAO,GAAG,GAAG,EAAE;oBACnB,MAAM,GAAG,GAAG,IAAI,CAAC,OAAO,CAAC,OAAO,CAAC,MAAgB,CAAC,CAAC;oBACnD,IAAI,GAAG,KAAK,CAAC,CAAC;wBAAE,OAAO;oBACvB,IAAI,CAAC,OAAO,CAAC,MAAM,CAAC,GAAG,EAAE,CAAC,CAAC,CAAC;oBAC5B,MAAM,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC;gBACxB,CAAC,CAAC;gBACF,MAAM,CAAC,OAAO,GAAG,OAAO,CAAC;gBACzB,MAAM,CAAC,gBAAgB,CAAC,OAAO,EAAE,OAAO,EAAE,EAAE,IAAI,EAAE,IAAI,EAAE,CAAC,CAAC;YAC5D,CAAC;YAED,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,MAAgB,CAAC,CAAC;YACpC,IAAI,CAAC,WAAW,EAAE,CAAC;QACrB,CAAC,CAAC,CAAC;IACL,CAAC;IAEO,WAAW;QACjB,IAAI,IAAI,CAAC,iBAAiB,KAAK,SAAS;YAAE,OAAO;QAEjD,OAAO,IAAI,CAAC,QAAQ,GAAG,IAAI,CAAC,aAAa,IAAI,IAAI,CAAC,OAAO,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;YACrE,MAAM,GAAG,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC;YACvB,MAAM,GAAG,GAAG,IAAI,CAAC,aAAa,GAAG,CAAC,GAAG,GAAG,IAAI,CAAC,aAAa,CAAC,CAAC;YAC5D,IAAI,GAAG,GAAG,CAAC,EAAE,CAAC;gBACZ,IAAI,CAAC,iBAAiB,GAAG,UAAU,CAAC,GAAG,EAAE;oBACvC,IAAI,CAAC,iBAAiB,GAAG,SAAS,CAAC;oBACnC,IAAI,CAAC,WAAW,EAAE,CAAC;gBACrB,CAAC,EAAE,GAAG,CAAC,CAAC;gBACR,OAAO;YACT,CAAC;YAED,MAAM,MAAM,GAAG,IAAI,CAAC,OAAO,CAAC,KAAK,EAAE,CAAC;YACpC,IAAI,CAAC,MAAM;gBAAE,OAAO;YAEpB,IAAI,MAAM,CAAC,MAAM,IAAI,MAAM,CAAC,OAAO,EAAE,CAAC;gBACpC,MAAM,CAAC,MAAM,CAAC,mBAAmB,CAAC,OAAO,EAAE,MAAM,CAAC,OAAO,CAAC,CAAC;YAC7D,CAAC;YAED,IAAI,CAAC,aAAa,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC;YAChC,IAAI,CAAC,QAAQ,IAAI,CAAC,CAAC;YACnB,MAAM,CAAC,KAAK,CACV,2CAA2C,MAAM,CAAC,KAAK,EAAE,EACzD,qBAAqB,CAAC,oBAAoB,CAAC;gBACzC,SAAS,EAAE,wBAAwB;gBACnC,KAAK,EAAE,MAAM,CAAC,KAAK;gBACnB,QAAQ,EAAE,IAAI,CAAC,QAAQ;gBACvB,UAAU,EAAE,IAAI,CAAC,OAAO,CAAC,MAAM;aAChC,CAAC,CACH,CAAC;YAEF,OAAO,CAAC,OAAO,EAAE;iBACd,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,IAAI,EAAE,CAAC;iBACzB,IAAI,CAAC,MAAM,CAAC,OAAO,EAAE,CAAC,GAAG,EAAE,EAAE;gBAC5B,MAAM,CAAC,KAAK,CACV,iDAAiD,EACjD,qBAAqB,CAAC,oBAAoB,CAAC;oBACzC,SAAS,EAAE,uBAAuB;oBAClC,KAAK,EAAE,MAAM,CAAC,KAAK;oBACnB,YAAY,EAAE,GAAG,YAAY,KAAK,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,GAAG,CAAC;iBAC/D,CAAC,CACH,CAAC;gBACF,MAAM,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC;YACrB,CAAC,CAAC;iBACD,OAAO,CAAC,GAAG,EAAE;gBACZ,IAAI,CAAC,QAAQ,IAAI,CAAC,CAAC;gBACnB,IAAI,CAAC,WAAW,EAAE,CAAC;YACrB,CAAC,CAAC,CAAC;QACP,CAAC;IACH,CAAC;CACF"}
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@@ -18,8 +18,8 @@ export declare const EUROPEPMC_API_BASE = "https://www.ebi.ac.uk/europepmc/webse
|
|
|
18
18
|
*/
|
|
19
19
|
export type EuropePmcSource = 'MED' | 'PMC' | 'PPR' | 'PAT' | 'AGR' | 'CTX' | 'CBA' | 'ETH' | 'HIR';
|
|
20
20
|
/** Allowed sources for `pubmed_europepmc_search` input. */
|
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21
|
-
export declare const EUROPEPMC_DEFAULT_SOURCES: readonly [
|
|
22
|
-
export declare const EUROPEPMC_ALL_SOURCES: readonly [
|
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21
|
+
export declare const EUROPEPMC_DEFAULT_SOURCES: readonly ['MED', 'PMC', 'PPR'];
|
|
22
|
+
export declare const EUROPEPMC_ALL_SOURCES: readonly ['MED', 'PMC', 'PPR', 'PAT', 'AGR'];
|
|
23
23
|
/**
|
|
24
24
|
* Single record from a Europe PMC search response. Only fields the server
|
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25
25
|
* actually consumes are typed; the upstream payload carries many more under
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@@ -1 +1 @@
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1
|
-
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|
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1
|
+
{"version":3,"file":"types.d.ts","sourceRoot":"","sources":["../../../src/services/europe-pmc/types.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAEH,qDAAqD;AACrD,eAAO,MAAM,kBAAkB,qDAAqD,CAAC;AAErF;;;;;GAKG;AACH,MAAM,MAAM,eAAe,GAAG,KAAK,GAAG,KAAK,GAAG,KAAK,GAAG,KAAK,GAAG,KAAK,GAAG,KAAK,GAAG,KAAK,GAAG,KAAK,GAAG,KAAK,CAAC;AAEpG,2DAA2D;AAC3D,eAAO,MAAM,yBAAyB,YAAI,KAAK,EAAE,KAAK,EAAE,KAAK,CAAU,CAAC;AACxE,eAAO,MAAM,qBAAqB,YAAI,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,CAAU,CAAC;AAElF;;;;;GAKG;AACH,MAAM,WAAW,kBAAkB;IACjC,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,mBAAmB,CAAC,EAAE,OAAO,CAAC;IAC9B,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,GAAG,CAAC,EAAE,MAAM,CAAC;IACb,oDAAoD;IACpD,cAAc,CAAC,EAAE,MAAM,CAAC;IACxB,wDAAwD;IACxD,oBAAoB,CAAC,EAAE,MAAM,CAAC;IAC9B,OAAO,CAAC,EAAE,GAAG,GAAG,GAAG,CAAC;IACpB,MAAM,CAAC,EAAE,GAAG,GAAG,GAAG,CAAC;IACnB,oFAAoF;IACpF,iBAAiB,CAAC,EAAE,GAAG,GAAG,GAAG,CAAC;IAC9B,6EAA6E;IAC7E,EAAE,EAAE,MAAM,CAAC;IACX,MAAM,CAAC,EAAE,GAAG,GAAG,GAAG,CAAC;IACnB,KAAK,CAAC,EAAE,GAAG,GAAG,GAAG,CAAC;IAClB,YAAY,CAAC,EAAE,GAAG,GAAG,GAAG,CAAC;IACzB,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,aAAa,CAAC,EAAE,MAAM,CAAC;IACvB,6DAA6D;IAC7D,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,MAAM,EAAE,eAAe,CAAC;IACxB,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,CAAC,KAAK,EAAE,MAAM,GAAG,OAAO,CAAC;CAC1B;AAED,+DAA+D;AAC/D,MAAM,WAAW,mBAAmB;IAClC,MAAM,CAAC,EAAE,kBAAkB,EAAE,GAAG,kBAAkB,CAAC;CACpD;AAED;;;;GAIG;AACH,MAAM,WAAW,uBAAuB;IACtC,mEAAmE;IACnE,OAAO,CAAC,EAAE,MAAM,GAAG,MAAM,CAAC;IAC1B,sEAAsE;IACtE,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,+CAA+C;IAC/C,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,gEAAgE;IAChE,cAAc,CAAC,EAAE,MAAM,CAAC;IACxB,mEAAmE;IACnE,OAAO,CAAC,EAAE;QACR,WAAW,CAAC,EAAE,MAAM,CAAC;QACrB,UAAU,CAAC,EAAE,MAAM,CAAC;QACpB,UAAU,CAAC,EAAE,MAAM,CAAC;QACpB,QAAQ,CAAC,EAAE,MAAM,CAAC;QAClB,IAAI,CAAC,EAAE,MAAM,CAAC;QACd,CAAC,KAAK,EAAE,MAAM,GAAG,OAAO,CAAC;KAC1B,CAAC;IACF,UAAU,CAAC,EAAE,mBAAmB,CAAC;IACjC,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,CAAC,KAAK,EAAE,MAAM,GAAG,OAAO,CAAC;CAC1B;AAED,8DAA8D;AAC9D,MAAM,WAAW,qBAAqB;IACpC,4EAA4E;IAC5E,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,QAAQ,EAAE,MAAM,CAAC;IACjB,IAAI,EAAE,kBAAkB,EAAE,CAAC;IAC3B,uEAAuE;IACvE,cAAc,CAAC,EAAE,MAAM,CAAC;IACxB,KAAK,EAAE,MAAM,CAAC;CACf;AAED,uDAAuD;AACvD,MAAM,WAAW,qBAAqB;IACpC,yEAAyE;IACzE,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,+BAA+B;IAC/B,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,KAAK,EAAE,MAAM,CAAC;IACd,2EAA2E;IAC3E,UAAU,CAAC,EAAE,MAAM,GAAG,MAAM,GAAG,QAAQ,CAAC;IACxC,MAAM,CAAC,EAAE,WAAW,CAAC;IACrB,oDAAoD;IACpD,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,4EAA4E;IAC5E,OAAO,CAAC,EAAE,SAAS,eAAe,EAAE,CAAC;CACtC;AAED,uCAAuC;AACvC,MAAM,MAAM,uBAAuB,GAC/B;IAAE,IAAI,EAAE,OAAO,CAAC;IAAC,GAAG,EAAE,MAAM,CAAC;IAAC,MAAM,EAAE,MAAM,CAAC;IAAC,MAAM,EAAE,eAAe,CAAA;CAAE,GACvE;IAAE,IAAI,EAAE,eAAe,CAAC;IAAC,MAAM,EAAE,MAAM,CAAA;CAAE,CAAC;AAE9C;;;GAGG;AACH,MAAM,WAAW,sBAAsB;IACrC,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,GAAG,CAAC,EAAE,MAAM,CAAC;IACb,EAAE,EAAE,MAAM,CAAC;IACX,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,CAAC,GAAG,EAAE,MAAM,GAAG,OAAO,CAAC;CACxB;AAED,0EAA0E;AAC1E,MAAM,WAAW,sBAAsB;IACrC,YAAY,CAAC,EAAE;QAAE,QAAQ,CAAC,EAAE,sBAAsB,EAAE,GAAG,sBAAsB,CAAA;KAAE,CAAC;IAChF,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,aAAa,CAAC,EAAE;QAAE,SAAS,CAAC,EAAE,sBAAsB,EAAE,GAAG,sBAAsB,CAAA;KAAE,CAAC;CACnF;AAED,0DAA0D;AAC1D,MAAM,WAAW,sBAAsB;IACrC,KAAK,EAAE,MAAM,EAAE,CAAC;IAChB,UAAU,EAAE,MAAM,CAAC;CACpB"}
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"api-client.d.ts","sourceRoot":"","sources":["../../../src/services/ncbi/api-client.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAMH,OAAO,EAAwB,KAAK,kBAAkB,EAAE,KAAK,iBAAiB,EAAE,MAAM,YAAY,CAAC;AAKnG,MAAM,WAAW,mBAAmB;IAClC,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,SAAS,EAAE,MAAM,CAAC;IAClB,cAAc,EAAE,MAAM,CAAC;CACxB;AAED;;;;GAIG;AACH,qBAAa,aAAa;IACZ,OAAO,CAAC,QAAQ,CAAC,MAAM;
|
|
1
|
+
{"version":3,"file":"api-client.d.ts","sourceRoot":"","sources":["../../../src/services/ncbi/api-client.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAMH,OAAO,EAAwB,KAAK,kBAAkB,EAAE,KAAK,iBAAiB,EAAE,MAAM,YAAY,CAAC;AAKnG,MAAM,WAAW,mBAAmB;IAClC,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,SAAS,EAAE,MAAM,CAAC;IAClB,cAAc,EAAE,MAAM,CAAC;CACxB;AAED;;;;GAIG;AACH,qBAAa,aAAa;IACZ,OAAO,CAAC,QAAQ,CAAC,MAAM;IAAnC,YAA6B,MAAM,EAAE,mBAAmB,EAAI;IAEtD,WAAW,CACf,QAAQ,EAAE,MAAM,EAChB,MAAM,EAAE,iBAAiB,EACzB,OAAO,CAAC,EAAE,kBAAkB,GAC3B,OAAO,CAAC,MAAM,CAAC,CAuCjB;IAED;;;;;OAKG;IACG,mBAAmB,CACvB,GAAG,EAAE,MAAM,EACX,MAAM,EAAE,iBAAiB,EACzB,cAAc,CAAC,EAAE,WAAW,GAC3B,OAAO,CAAC,MAAM,CAAC,CAyCjB;IAED,OAAO,CAAC,WAAW;IAiBnB,OAAO,CAAC,UAAU;IAMlB;;;;;OAKG;IACH,OAAO,CAAC,UAAU;IAUlB,sFAAsF;IACtF,OAAO,CAAC,WAAW;IAcnB;;;OAGG;IACH,OAAO,CAAC,kBAAkB;CAI3B"}
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"api-client.js","sourceRoot":"","sources":["../../../src/services/ncbi/api-client.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,EAAE,gBAAgB,EAAE,QAAQ,EAAE,kBAAkB,EAAE,MAAM,+BAA+B,CAAC;AAC/F,OAAO,EAAE,qBAAqB,EAAE,MAAM,EAAE,qBAAqB,EAAE,MAAM,8BAA8B,CAAC;AAEpG,OAAO,EAAE,WAAW,EAAE,MAAM,+BAA+B,CAAC;AAC5D,OAAO,EAAE,oBAAoB,EAAmD,MAAM,YAAY,CAAC;AAEnG,kFAAkF;AAClF,MAAM,cAAc,GAAG,IAAI,CAAC;AAS5B;;;;GAIG;AACH,MAAM,OAAO,aAAa;IACK;
|
|
1
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1
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{"version":3,"file":"esummary-parser.d.ts","sourceRoot":"","sources":["../../../../src/services/ncbi/parsing/esummary-parser.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,8BAA8B,CAAC;AAEnE,OAAO,KAAK,EAKV,cAAc,EACd,kBAAkB,EAClB,cAAc,IAAI,iBAAiB,EAEpC,MAAM,aAAa,CAAC;AAGrB;;;GAGG;AACH,wBAAgB,qBAAqB,CAAC,OAAO,CAAC,EAAE,iBAAiB,EAAE,GAAG,MAAM,CAQ3E;AA8BD;;;;;;;GAOG;AACH,wBAAgB,aAAa,CAAC,OAAO,EAAE,MAAM,GAAG,MAAM,GAAG,SAAS,CAajE;AAED;;;;GAIG;AACH,wBAAsB,uBAAuB,CAC3C,OAAO,CAAC,EAAE,MAAM,EAChB,aAAa,CAAC,EAAE,cAAc,GAC7B,OAAO,CAAC,MAAM,GAAG,SAAS,CAAC,CAkC7B;
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1
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+
{"version":3,"file":"esummary-parser.d.ts","sourceRoot":"","sources":["../../../../src/services/ncbi/parsing/esummary-parser.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,8BAA8B,CAAC;AAEnE,OAAO,KAAK,EAKV,cAAc,EACd,kBAAkB,EAClB,cAAc,IAAI,iBAAiB,EAEpC,MAAM,aAAa,CAAC;AAGrB;;;GAGG;AACH,wBAAgB,qBAAqB,CAAC,OAAO,CAAC,EAAE,iBAAiB,EAAE,GAAG,MAAM,CAQ3E;AA8BD;;;;;;;GAOG;AACH,wBAAgB,aAAa,CAAC,OAAO,EAAE,MAAM,GAAG,MAAM,GAAG,SAAS,CAajE;AAED;;;;GAIG;AACH,wBAAsB,uBAAuB,CAC3C,OAAO,CAAC,EAAE,MAAM,EAChB,aAAa,CAAC,EAAE,cAAc,GAC7B,OAAO,CAAC,MAAM,GAAG,SAAS,CAAC,CAkC7B;AAoQD;;;GAGG;AACH,wBAAsB,qBAAqB,CACzC,cAAc,CAAC,EAAE,cAAc,EAC/B,OAAO,CAAC,EAAE,cAAc,GACvB,OAAO,CAAC,kBAAkB,EAAE,CAAC,CAkD/B"}
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@@ -235,6 +235,7 @@ function parseSingleDocumentSummary(docSummary) {
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authors: formatESummaryAuthors(authorsArray),
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authorNames: authorsArray.map((a) => a.name),
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@@ -291,6 +292,7 @@ function parseSingleDocSumOldXml(docSum) {
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|
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@@ -334,6 +336,7 @@ export async function extractBriefSummaries(eSummaryResult, context) {
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...(rawSummary.authorNames !== undefined && { authorNames: rawSummary.authorNames }),
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...(rawSummary.pmcId !== undefined && { pmcId: rawSummary.pmcId }),
|
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@@ -1 +1 @@
|
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1
|
-
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1
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+
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|
|
@@ -1 +1 @@
|
|
|
1
|
-
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|
|
1
|
+
{"version":3,"file":"response-handler.d.ts","sourceRoot":"","sources":["../../../src/services/ncbi/response-handler.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAiBH,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAC;AAiMrD;;;;;;;;;;;;;;;;GAgBG;AACH,wBAAgB,mBAAmB,CAAC,GAAG,EAAE,MAAM,GAAG,MAAM,CAMvD;AAED;;;GAGG;AACH,qBAAa,mBAAmB;IAC9B,OAAO,CAAC,QAAQ,CAAC,SAAS,CAAgB;IAC1C;;;;;;;;;;OAUG;IACH,OAAO,CAAC,QAAQ,CAAC,gBAAgB,CAAgB;IAEjD,cAkBC;IAED;;;;;;;;OAQG;IACH,OAAO,CAAC,cAAc;IA4BtB,wBAAwB,CAAC,SAAS,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,GAAG,MAAM,EAAE,CAoBrE;IAED,sBAAsB,CAAC,CAAC,EACtB,YAAY,EAAE,MAAM,EACpB,QAAQ,EAAE,MAAM,EAChB,OAAO,CAAC,EAAE,kBAAkB,GAC3B,CAAC,CAyNH;CACF"}
|
|
@@ -381,6 +381,12 @@ export interface ESummaryResponseContainer {
|
|
|
381
381
|
eSummaryResult: ESummaryResult;
|
|
382
382
|
}
|
|
383
383
|
export interface ParsedBriefSummary {
|
|
384
|
+
/**
|
|
385
|
+
* Full, untruncated author roster from ESummary. `authors` collapses to three
|
|
386
|
+
* names for display, so any check that must consider every author (e.g.
|
|
387
|
+
* verifying a queried author appears on the article) reads this instead.
|
|
388
|
+
*/
|
|
389
|
+
authorNames?: string[];
|
|
384
390
|
authors?: string;
|
|
385
391
|
doi?: string;
|
|
386
392
|
epubDate?: string;
|
|
@@ -1 +1 @@
|
|
|
1
|
-
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1
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+
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1
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