@cyanheads/pubmed-mcp-server 2.7.2 → 2.7.4
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/CLAUDE.md +5 -2
- package/README.md +5 -4
- package/package.json +5 -2
- package/server.json +3 -3
package/CLAUDE.md
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# Agent Protocol
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**Server:** @cyanheads/pubmed-mcp-server
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**Version:** 2.
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**Framework:** [@cyanheads/mcp-ts-core](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) `^0.9.
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**Version:** 2.7.4
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**Framework:** [@cyanheads/mcp-ts-core](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) `^0.9.6`
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**Engines:** Bun ≥1.3.2, Node ≥24.0.0
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> **Read the framework docs first:** `node_modules/@cyanheads/mcp-ts-core/CLAUDE.md` contains the full API reference — builders, Context, error codes, exports, patterns. This file covers server-specific conventions only.
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|:---------|:------------|
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| `ctx.log` | Request-scoped logger — `.debug()`, `.info()`, `.notice()`, `.warning()`, `.error()`. Auto-correlates requestId, traceId, tenantId. |
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| `ctx.state` | Tenant-scoped KV — `.get(key)`, `.set(key, value, { ttl? })`, `.delete(key)`, `.list(prefix, { cursor, limit })`. Accepts any serializable value. |
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| `ctx.elicit` | Ask user for structured input. **Check for presence first:** `if (ctx.elicit) { ... }` |
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| `ctx.sample` | Request LLM completion from the client. **Check for presence first:** `if (ctx.sample) { ... }` |
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| `ctx.progress` | Task progress (present when `task: true`) — `.setTotal(n)`, `.increment()`, `.update(message)`. |
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| `ctx.recoveryFor(reason)` | Typed lookup of the contract `recovery` for a declared reason. Returns `{ recovery: { hint } }` for known reasons, `{}` otherwise. Spread into `ctx.fail` data to mirror the contract hint into `content[]`. |
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| `ctx.signal` | `AbortSignal` for cancellation. |
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| `ctx.requestId` | Unique request ID. |
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package/README.md
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<div align="center">
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[](https://www.npmjs.com/package/@cyanheads/mcp-ts-core)
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[](./CHANGELOG.md) [](./LICENSE) [](https://github.com/users/cyanheads/packages/container/package/pubmed-mcp-server)
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[](https://modelcontextprotocol.io/) [](https://www.npmjs.com/package/@cyanheads/pubmed-mcp-server) [](https://www.typescriptlang.org/) [](https://bun.sh/)
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[](./CHANGELOG.md) [](./LICENSE) [](https://github.com/users/cyanheads/packages/container/package/pubmed-mcp-server) [](https://modelcontextprotocol.io/) [](https://www.npmjs.com/package/@cyanheads/pubmed-mcp-server) [](https://www.typescriptlang.org/) [](https://bun.sh/)
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</div>
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<div align="center">
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[](https://github.com/cyanheads/pubmed-mcp-server/releases/latest/download/pubmed-mcp-server.mcpb) [](cursor
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[](https://github.com/cyanheads/pubmed-mcp-server/releases/latest/download/pubmed-mcp-server.mcpb) [](https://cursor.com/en/install-mcp?name=pubmed-mcp-server&config=eyJjb21tYW5kIjoibnB4IC15IEBjeWFuaGVhZHMvcHVibWVkLW1jcC1zZXJ2ZXIifQ%3D%3D) [](https://vscode.dev/redirect?url=vscode:mcp/install?%7B%22name%22%3A%22pubmed-mcp-server%22%2C%22command%22%3A%22npx%22%2C%22args%22%3A%5B%22-y%22%2C%22%40cyanheads%2Fpubmed-mcp-server%22%5D%7D)
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[](https://www.npmjs.com/package/@cyanheads/mcp-ts-core)
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</div>
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| `MCP_PUBLIC_URL` | Public origin override for TLS-terminating reverse-proxy deployments (landing page, Server Card, RFC 9728 metadata). | none |
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| `MCP_AUTH_MODE` | Authentication: `none`, `jwt`, or `oauth` | `none` |
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| `MCP_LOG_LEVEL` | Log level (`debug`, `info`, `warning`, `error`, etc.) | `info` |
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| `MCP_GC_PRESSURE_INTERVAL_MS` | Opt-in Bun-only forced-GC pressure loop (ms). Drains the per-request `McpServer`/`McpSessionTransport` cycle under sustained low-traffic HTTP. Recommended starting point if heap growth is observed: `60000`. | `0` (disabled) |
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| `LOGS_DIR` | Directory for log files (Node.js only). | `<project-root>/logs` |
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| `STORAGE_PROVIDER_TYPE` | Storage backend: `in-memory`, `filesystem`, `supabase`, `cloudflare-kv/r2/d1` | `in-memory` |
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| `NCBI_API_KEY` | NCBI API key for higher rate limits (10 req/s vs 3 req/s) | none |
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package/package.json
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{
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"name": "@cyanheads/pubmed-mcp-server",
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"version": "2.7.
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"version": "2.7.4",
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"mcpName": "io.github.cyanheads/pubmed-mcp-server",
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"description": "Search PubMed/Europe PMC, fetch articles and full text (PMC/EPMC/Unpaywall), citations, MeSH terms via MCP. STDIO or Streamable HTTP.",
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"type": "module",
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"model-context-protocol",
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"mcp-server",
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"typescript",
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"bun",
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"stdio",
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"streamable-http",
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"ai-agent",
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"e-utilities",
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"open-access",
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"access": "public"
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},
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"dependencies": {
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"@cyanheads/mcp-ts-core": "^0.9.
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"@cyanheads/mcp-ts-core": "^0.9.6",
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"defuddle": "^0.18.1",
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"fast-xml-parser": "^5.8.0",
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"linkedom": "^0.18.12",
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package/server.json
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"url": "https://github.com/cyanheads/pubmed-mcp-server",
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"source": "github"
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},
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"version": "2.7.
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"version": "2.7.4",
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"remotes": [
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"type": "streamable-http",
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"registryBaseUrl": "https://registry.npmjs.org",
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"identifier": "@cyanheads/pubmed-mcp-server",
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"runtimeHint": "bun",
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"version": "2.7.
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"version": "2.7.4",
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"packageArguments": [
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"type": "positional",
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"registryBaseUrl": "https://registry.npmjs.org",
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"identifier": "@cyanheads/pubmed-mcp-server",
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"runtimeHint": "bun",
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"version": "2.7.
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"version": "2.7.4",
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"packageArguments": [
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{
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"type": "positional",
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