@cyanheads/pubmed-mcp-server 2.6.8 → 2.6.9

package/dist/services/error-contracts.d.ts

@@ -0,0 +1,89 @@
+/**
+ * @fileoverview Canonical service-layer error contracts. Single source of truth
+ * for the failure modes both services throw and tools declare in `errors[]`.
+ *
+ * Service-layer code can't reach `ctx.recoveryFor` (no Context), so it spreads
+ * `recoveryFor(reason)` from this module into the error factory's `data` arg.
+ * The framework mirrors `data.recovery.hint` into the wire payload's
+ * `content[]` text, so clients get the same actionable hint they would from a
+ * handler-level `ctx.fail`.
+ *
+ * Tool definitions import the contract arrays directly and spread them into
+ * their `errors: [...]` declarations to surface the failure modes to the LLM.
+ *
+ * @module src/services/error-contracts
+ */
+import { JsonRpcErrorCode } from '@cyanheads/mcp-ts-core/errors';
+/**
+ * Failure modes the NCBI service layer can surface. Tools that consume
+ * `getNcbiService()` should spread these into their own `errors[]` so the
+ * declared contract matches what actually reaches the wire.
+ */
+export declare const NCBI_SERVICE_ERRORS: readonly [{
+    readonly reason: "queue_full";
+    readonly code: JsonRpcErrorCode.RateLimited;
+    readonly when: "Local NCBI request queue is at capacity.";
+    readonly recovery: "Retry after 1-2 seconds; the request queue hit the NCBI rate limit.";
+    readonly retryable: true;
+}, {
+    readonly reason: "ncbi_unreachable";
+    readonly code: JsonRpcErrorCode.ServiceUnavailable;
+    readonly when: "NCBI E-utilities is unreachable after all retry attempts.";
+    readonly recovery: "Retry after a brief delay; NCBI was unreachable across all retry attempts.";
+    readonly retryable: true;
+}, {
+    readonly reason: "ncbi_deadline_exceeded";
+    readonly code: JsonRpcErrorCode.Timeout;
+    readonly when: "Total request deadline expired before NCBI returned a response.";
+    readonly recovery: "Reduce batch size or retry; NCBI may be under temporary load.";
+    readonly retryable: true;
+}, {
+    readonly reason: "ncbi_invalid_response";
+    readonly code: JsonRpcErrorCode.SerializationError;
+    readonly when: "NCBI returned a body that could not be parsed (invalid XML/JSON).";
+    readonly recovery: "Retry the request; NCBI returned a malformed response that could not be parsed.";
+    readonly retryable: true;
+}, {
+    readonly reason: "ncbi_resource_not_found";
+    readonly code: JsonRpcErrorCode.NotFound;
+    readonly when: "NCBI returned a structured \"not found\" error for the requested ID(s).";
+    readonly recovery: "Verify the ID exists in PubMed; the resource was not found in NCBI and retrying will not help.";
+    readonly retryable: false;
+}];
+/**
+ * Failure modes the Unpaywall service layer can surface. Tools that consume
+ * `getUnpaywallService()` (currently `pubmed_fetch_fulltext`) should spread
+ * these into their `errors[]`.
+ */
+export declare const UNPAYWALL_SERVICE_ERRORS: readonly [{
+    readonly reason: "unpaywall_unreachable";
+    readonly code: JsonRpcErrorCode.ServiceUnavailable;
+    readonly when: "Unpaywall was unreachable when resolving a DOI or fetching content.";
+    readonly recovery: "Retry after a brief delay; Unpaywall was unreachable. The PMC source remains the primary path.";
+    readonly retryable: true;
+}];
+/**
+ * Reason identifier union for type-safe authoring on the service layer.
+ * Tool handlers get a tighter typed union from `ctx.fail` / `ctx.recoveryFor`
+ * via the framework — this is the service-side fallback.
+ */
+export type ServiceErrorReason = (typeof NCBI_SERVICE_ERRORS)[number]['reason'] | (typeof UNPAYWALL_SERVICE_ERRORS)[number]['reason'];
+/**
+ * Service-layer counterpart to `ctx.recoveryFor`. Returns `{ recovery: { hint } }`
+ * for the contract reason. Use at every service throw that stamps a `reason` so
+ * the wire payload carries the same actionable hint the LLM gets from
+ * handler-level `ctx.fail`.
+ *
+ * The parameter is constrained to `ServiceErrorReason`, so typos fail at compile
+ * time. The runtime guard catches the impossible case where the reason union
+ * and the recovery map drift apart in future edits.
+ *
+ * @example
+ *   throw serviceUnavailable(msg, { reason: 'ncbi_unreachable', ...recoveryFor('ncbi_unreachable') });
+ */
+export declare function recoveryFor(reason: ServiceErrorReason): {
+    recovery: {
+        hint: string;
+    };
+};
+//# sourceMappingURL=error-contracts.d.ts.map

package/dist/services/error-contracts.d.ts.map

@@ -0,0 +1 @@
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package/dist/services/error-contracts.js

@@ -0,0 +1,97 @@
+/**
+ * @fileoverview Canonical service-layer error contracts. Single source of truth
+ * for the failure modes both services throw and tools declare in `errors[]`.
+ *
+ * Service-layer code can't reach `ctx.recoveryFor` (no Context), so it spreads
+ * `recoveryFor(reason)` from this module into the error factory's `data` arg.
+ * The framework mirrors `data.recovery.hint` into the wire payload's
+ * `content[]` text, so clients get the same actionable hint they would from a
+ * handler-level `ctx.fail`.
+ *
+ * Tool definitions import the contract arrays directly and spread them into
+ * their `errors: [...]` declarations to surface the failure modes to the LLM.
+ *
+ * @module src/services/error-contracts
+ */
+import { JsonRpcErrorCode } from '@cyanheads/mcp-ts-core/errors';
+/**
+ * Failure modes the NCBI service layer can surface. Tools that consume
+ * `getNcbiService()` should spread these into their own `errors[]` so the
+ * declared contract matches what actually reaches the wire.
+ */
+export const NCBI_SERVICE_ERRORS = [
+    {
+        reason: 'queue_full',
+        code: JsonRpcErrorCode.RateLimited,
+        when: 'Local NCBI request queue is at capacity.',
+        recovery: 'Retry after 1-2 seconds; the request queue hit the NCBI rate limit.',
+        retryable: true,
+    },
+    {
+        reason: 'ncbi_unreachable',
+        code: JsonRpcErrorCode.ServiceUnavailable,
+        when: 'NCBI E-utilities is unreachable after all retry attempts.',
+        recovery: 'Retry after a brief delay; NCBI was unreachable across all retry attempts.',
+        retryable: true,
+    },
+    {
+        reason: 'ncbi_deadline_exceeded',
+        code: JsonRpcErrorCode.Timeout,
+        when: 'Total request deadline expired before NCBI returned a response.',
+        recovery: 'Reduce batch size or retry; NCBI may be under temporary load.',
+        retryable: true,
+    },
+    {
+        reason: 'ncbi_invalid_response',
+        code: JsonRpcErrorCode.SerializationError,
+        when: 'NCBI returned a body that could not be parsed (invalid XML/JSON).',
+        recovery: 'Retry the request; NCBI returned a malformed response that could not be parsed.',
+        retryable: true,
+    },
+    {
+        reason: 'ncbi_resource_not_found',
+        code: JsonRpcErrorCode.NotFound,
+        when: 'NCBI returned a structured "not found" error for the requested ID(s).',
+        recovery: 'Verify the ID exists in PubMed; the resource was not found in NCBI and retrying will not help.',
+        retryable: false,
+    },
+];
+/**
+ * Failure modes the Unpaywall service layer can surface. Tools that consume
+ * `getUnpaywallService()` (currently `pubmed_fetch_fulltext`) should spread
+ * these into their `errors[]`.
+ */
+export const UNPAYWALL_SERVICE_ERRORS = [
+    {
+        reason: 'unpaywall_unreachable',
+        code: JsonRpcErrorCode.ServiceUnavailable,
+        when: 'Unpaywall was unreachable when resolving a DOI or fetching content.',
+        recovery: 'Retry after a brief delay; Unpaywall was unreachable. The PMC source remains the primary path.',
+        retryable: true,
+    },
+];
+const REASON_TO_RECOVERY = new Map([...NCBI_SERVICE_ERRORS, ...UNPAYWALL_SERVICE_ERRORS].map((entry) => [
+    entry.reason,
+    entry.recovery,
+]));
+/**
+ * Service-layer counterpart to `ctx.recoveryFor`. Returns `{ recovery: { hint } }`
+ * for the contract reason. Use at every service throw that stamps a `reason` so
+ * the wire payload carries the same actionable hint the LLM gets from
+ * handler-level `ctx.fail`.
+ *
+ * The parameter is constrained to `ServiceErrorReason`, so typos fail at compile
+ * time. The runtime guard catches the impossible case where the reason union
+ * and the recovery map drift apart in future edits.
+ *
+ * @example
+ *   throw serviceUnavailable(msg, { reason: 'ncbi_unreachable', ...recoveryFor('ncbi_unreachable') });
+ */
+export function recoveryFor(reason) {
+    const hint = REASON_TO_RECOVERY.get(reason);
+    if (hint === undefined) {
+        throw new Error(`recoveryFor: no recovery hint registered for reason "${reason}"`);
+    }
+    return { recovery: { hint } };
+}
+//# sourceMappingURL=error-contracts.js.map

package/dist/services/error-contracts.js.map

@@ -0,0 +1 @@
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package/dist/services/ncbi/api-client.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"api-client.d.ts","sourceRoot":"","sources":["../../../src/services/ncbi/api-client.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAUH,OAAO,EAAwB,KAAK,kBAAkB,EAAE,KAAK,iBAAiB,EAAE,MAAM,YAAY,CAAC;AAKnG,MAAM,WAAW,mBAAmB;IAClC,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,SAAS,EAAE,MAAM,CAAC;IAClB,cAAc,EAAE,MAAM,CAAC;CACxB;AAED;;;;GAIG;AACH,qBAAa,aAAa;IACZ,OAAO,CAAC,QAAQ,CAAC,MAAM;gBAAN,MAAM,EAAE,mBAAmB;IAElD,WAAW,CACf,QAAQ,EAAE,MAAM,EAChB,MAAM,EAAE,iBAAiB,EACzB,OAAO,CAAC,EAAE,kBAAkB,GAC3B,OAAO,CAAC,MAAM,CAAC;IAgClB;;;;;OAKG;IACG,mBAAmB,CACvB,GAAG,EAAE,MAAM,EACX,MAAM,EAAE,iBAAiB,EACzB,cAAc,CAAC,EAAE,WAAW,GAC3B,OAAO,CAAC,MAAM,CAAC;IA0ClB,OAAO,CAAC,WAAW;IAiBnB,OAAO,CAAC,UAAU;IAMlB,OAAO,CAAC,UAAU;IAWlB,OAAO,CAAC,WAAW;CAcpB"}
+{"version":3,"file":"api-client.d.ts","sourceRoot":"","sources":["../../../src/services/ncbi/api-client.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAWH,OAAO,EAAwB,KAAK,kBAAkB,EAAE,KAAK,iBAAiB,EAAE,MAAM,YAAY,CAAC;AAKnG,MAAM,WAAW,mBAAmB;IAClC,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,SAAS,EAAE,MAAM,CAAC;IAClB,cAAc,EAAE,MAAM,CAAC;CACxB;AAED;;;;GAIG;AACH,qBAAa,aAAa;IACZ,OAAO,CAAC,QAAQ,CAAC,MAAM;gBAAN,MAAM,EAAE,mBAAmB;IAElD,WAAW,CACf,QAAQ,EAAE,MAAM,EAChB,MAAM,EAAE,iBAAiB,EACzB,OAAO,CAAC,EAAE,kBAAkB,GAC3B,OAAO,CAAC,MAAM,CAAC;IAoClB;;;;;OAKG;IACG,mBAAmB,CACvB,GAAG,EAAE,MAAM,EACX,MAAM,EAAE,iBAAiB,EACzB,cAAc,CAAC,EAAE,WAAW,GAC3B,OAAO,CAAC,MAAM,CAAC;IA8ClB,OAAO,CAAC,WAAW;IAiBnB,OAAO,CAAC,UAAU;IAMlB,OAAO,CAAC,UAAU;IAWlB,OAAO,CAAC,WAAW;CAcpB"}

package/dist/services/ncbi/api-client.js

@@ -6,6 +6,7 @@
  */
 import { McpError, serviceUnavailable } from '@cyanheads/mcp-ts-core/errors';
 import { fetchWithTimeout, httpErrorFromResponse, logger, requestContextService, } from '@cyanheads/mcp-ts-core/utils';
+import { recoveryFor } from '../../services/error-contracts.js';
 import { NCBI_EUTILS_BASE_URL } from './types.js';
 /** Maximum encoded query-string length before automatically switching to POST. */
 const POST_THRESHOLD = 2000;
@@ -41,7 +42,7 @@ export class NcbiApiClient {
             if (error instanceof McpError)
                 throw error;
             const msg = error instanceof Error ? error.message : String(error);
-            throw serviceUnavailable(`NCBI request failed: ${msg}`, { endpoint }, { cause: error });
+            throw serviceUnavailable(`NCBI request failed: ${msg}`, { reason: 'ncbi_unreachable', endpoint, ...recoveryFor('ncbi_unreachable') }, { cause: error });
         }
     }
     /**
@@ -82,7 +83,7 @@ export class NcbiApiClient {
             if (error instanceof McpError)
                 throw error;
             const msg = error instanceof Error ? error.message : String(error);
-            throw serviceUnavailable(`NCBI request failed: ${msg}`, { url }, { cause: error });
+            throw serviceUnavailable(`NCBI request failed: ${msg}`, { reason: 'ncbi_unreachable', url, ...recoveryFor('ncbi_unreachable') }, { cause: error });
         }
     }
     buildParams(params) {

package/dist/services/ncbi/api-client.js.map

@@ -1 +1 @@
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package/dist/services/ncbi/formatting/citation-formatter.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"citation-formatter.d.ts","sourceRoot":"","sources":["../../../../src/services/ncbi/formatting/citation-formatter.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,KAAK,EAAE,aAAa,EAAuB,MAAM,aAAa,CAAC;AAEtE,yCAAyC;AACzC,MAAM,MAAM,aAAa,GAAG,KAAK,GAAG,KAAK,GAAG,QAAQ,GAAG,KAAK,CAAC;AAgM7D;;;;;;;GAOG;AACH,wBAAgB,SAAS,CAAC,OAAO,EAAE,aAAa,GAAG,MAAM,CA6CxD;AAMD;;;;;;;GAOG;AACH,wBAAgB,SAAS,CAAC,OAAO,EAAE,aAAa,GAAG,MAAM,CAkDxD;AAMD;;;;;;;;;;;;GAYG;AACH,wBAAgB,YAAY,CAAC,OAAO,EAAE,aAAa,GAAG,MAAM,CA8E3D;AAMD;;;;;GAKG;AACH,wBAAgB,SAAS,CAAC,OAAO,EAAE,aAAa,GAAG,MAAM,CA4FxD;AAMD;;;GAGG;AACH,wBAAgB,cAAc,CAAC,OAAO,EAAE,aAAa,EAAE,KAAK,EAAE,aAAa,GAAG,MAAM,CAWnF;AAED;;;GAGG;AACH,wBAAgB,eAAe,CAC7B,OAAO,EAAE,aAAa,EACtB,MAAM,EAAE,aAAa,EAAE,GACtB,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,CAMxB"}

package/dist/services/ncbi/formatting/citation-formatter.js

@@ -106,10 +106,9 @@ function formatAuthorApa(author) {
             .join(' ');
     if (!initials)
         return last;
-    // Extract only letter characters, format each as "X." separated by spaces
-    const formatted = initials
-        .replace(/[^A-Za-z]/g, '')
-        .split('')
+    // Extract only letter characters (Unicode-aware: preserve Á, Ö, É, etc.),
+    // format each as "X." separated by spaces.
+    const formatted = Array.from(initials.replace(/[^\p{L}]/gu, ''))
         .map((c) => `${c}.`)
         .join(' ');
     if (!last)

package/dist/services/ncbi/formatting/citation-formatter.js.map

@@ -1 +1 @@
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package/dist/services/ncbi/ncbi-service.d.ts.map

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package/dist/services/ncbi/ncbi-service.js

@@ -4,13 +4,25 @@
  * typed methods for each E-utility endpoint. Uses init/accessor pattern.
  * @module src/services/ncbi/ncbi-service
  */
-import { internalError, JsonRpcErrorCode, McpError, serializationError, timeout, } from '@cyanheads/mcp-ts-core/errors';
+import { internalError, JsonRpcErrorCode, McpError, serializationError, timeout, validationError, } from '@cyanheads/mcp-ts-core/errors';
 import { logger, requestContextService } from '@cyanheads/mcp-ts-core/utils';
 import { getServerConfig } from '../../config/server-config.js';
+import { recoveryFor } from '../../services/error-contracts.js';
 import { NcbiApiClient } from './api-client.js';
 import { NcbiRequestQueue } from './request-queue.js';
 import { NcbiResponseHandler } from './response-handler.js';
 import { NCBI_PMC_IDCONV_URL, } from './types.js';
+/**
+ * Per-idType expected-format hints surfaced when PMC ID Converter rejects a
+ * batch with HTTP 400. Informational only — NCBI's API is the authority on
+ * what's accepted, so a stale hint here only weakens the error message, never
+ * blocks a valid request.
+ */
+const ID_CONVERT_FORMAT_HINTS = {
+    pmid: 'numeric digits, e.g. "23193287"',
+    pmcid: '"PMC" + digits, e.g. "PMC3531190"',
+    doi: 'starts with "10.", e.g. "10.1093/nar/gks1195"',
+};
 /** Sentinel reason used when the service-level deadline expires. */
 class NcbiDeadlineExceeded extends Error {
     constructor(deadlineMs) {
@@ -173,13 +185,33 @@ export class NcbiService {
             format: 'json',
             ...(idtype && { idtype }),
         };
-        const text = await this.queue.enqueue(() => this.runWithDeadline((signal) => this.withRetry(() => this.apiClient.makeExternalRequest(NCBI_PMC_IDCONV_URL, params, signal), 'idconv', signal), options?.signal), 'idconv', params);
+        let text;
+        try {
+            text = await this.queue.enqueue(() => this.runWithDeadline((signal) => this.withRetry(() => this.apiClient.makeExternalRequest(NCBI_PMC_IDCONV_URL, params, signal), 'idconv', signal), options?.signal), 'idconv', params);
+        }
+        catch (error) {
+            // PMC ID Converter returns 400 (InvalidParams) for malformed inputs and
+            // leaks the upstream HTML/text body into `data.body`. Rewrite to a typed
+            // validation error with idType-specific guidance and drop the leaky body.
+            if (error instanceof McpError && error.code === JsonRpcErrorCode.InvalidParams) {
+                const hint = ID_CONVERT_FORMAT_HINTS[idtype ?? ''];
+                const message = hint
+                    ? `PMC ID Converter rejected one or more inputs as malformed (idType="${idtype}"). Expected: ${hint}.`
+                    : `PMC ID Converter rejected the input as malformed (idType="${idtype ?? 'unspecified'}").`;
+                throw validationError(message, { idType: idtype, idCount: ids.length }, { cause: error });
+            }
+            throw error;
+        }
         let parsed;
         try {
             parsed = JSON.parse(text);
         }
         catch (error) {
-            throw serializationError('Failed to parse ID Converter JSON response.', { responseSnippet: text.substring(0, 200) }, { cause: error });
+            throw serializationError('Failed to parse ID Converter JSON response.', {
+                reason: 'ncbi_invalid_response',
+                responseSnippet: text.substring(0, 200),
+                ...recoveryFor('ncbi_invalid_response'),
+            }, { cause: error });
         }
         return parsed.records ?? [];
     }
@@ -208,7 +240,11 @@ export class NcbiService {
         }
         catch (error) {
             if (error instanceof NcbiDeadlineExceeded) {
-                throw timeout(error.message, { reason: 'ncbi_deadline_exceeded', deadlineMs: this.totalDeadlineMs }, { cause: error });
+                throw timeout(error.message, {
+                    reason: 'ncbi_deadline_exceeded',
+                    deadlineMs: this.totalDeadlineMs,
+                    ...recoveryFor('ncbi_deadline_exceeded'),
+                }, { cause: error });
             }
             throw error;
         }
@@ -258,10 +294,18 @@ export class NcbiService {
                 // RateLimited) keep their original code with no reason — `ncbi_deadline_exceeded`
                 // and `queue_full` are stamped at their own throw sites.
                 const reason = error.code === JsonRpcErrorCode.ServiceUnavailable ? 'ncbi_unreachable' : undefined;
-                throw new McpError(error.code, `${msg} (failed after ${attempts} attempts)`, { ...(reason && { reason }), endpoint: label, attempts }, { cause: error });
+                throw new McpError(error.code, `${msg} (failed after ${attempts} attempts)`, {
+                    ...(reason && { reason, ...recoveryFor(reason) }),
+                    endpoint: label,
+                    attempts,
+                }, { cause: error });
             }
         }
-        throw internalError('Request failed after all retries.', { endpoint: label });
+        throw internalError('Request failed after all retries.', {
+            reason: 'ncbi_unreachable',
+            endpoint: label,
+            ...recoveryFor('ncbi_unreachable'),
+        });
     }
     /**
      * Enqueues a request with a service-level deadline and retry logic that covers

package/dist/services/ncbi/ncbi-service.js.map

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package/dist/services/ncbi/request-queue.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"request-queue.d.ts","sourceRoot":"","sources":["../../../src/services/ncbi/request-queue.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAKH,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,YAAY,CAAC;AAYpD;;;GAGG;AACH,qBAAa,gBAAgB;IAC3B,OAAO,CAAC,QAAQ,CAAC,KAAK,CAAuB;IAC7C,OAAO,CAAC,QAAQ,CAAC,OAAO,CAAS;IACjC,OAAO,CAAC,QAAQ,CAAC,YAAY,CAAS;IACtC,OAAO,CAAC,UAAU,CAAS;IAC3B,OAAO,CAAC,eAAe,CAAK;gBAEhB,OAAO,EAAE,MAAM,EAAE,YAAY,SAAyB;IAKlE,OAAO,CAAC,CAAC,EAAE,IAAI,EAAE,MAAM,OAAO,CAAC,CAAC,CAAC,EAAE,QAAQ,EAAE,MAAM,EAAE,MAAM,EAAE,iBAAiB,GAAG,OAAO,CAAC,CAAC,CAAC;YA0B7E,YAAY;CAqD3B"}
+{"version":3,"file":"request-queue.d.ts","sourceRoot":"","sources":["../../../src/services/ncbi/request-queue.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAMH,OAAO,KAAK,EAAE,iBAAiB,EAAE,MAAM,YAAY,CAAC;AAYpD;;;GAGG;AACH,qBAAa,gBAAgB;IAC3B,OAAO,CAAC,QAAQ,CAAC,KAAK,CAAuB;IAC7C,OAAO,CAAC,QAAQ,CAAC,OAAO,CAAS;IACjC,OAAO,CAAC,QAAQ,CAAC,YAAY,CAAS;IACtC,OAAO,CAAC,UAAU,CAAS;IAC3B,OAAO,CAAC,eAAe,CAAK;gBAEhB,OAAO,EAAE,MAAM,EAAE,YAAY,SAAyB;IAKlE,OAAO,CAAC,CAAC,EAAE,IAAI,EAAE,MAAM,OAAO,CAAC,CAAC,CAAC,EAAE,QAAQ,EAAE,MAAM,EAAE,MAAM,EAAE,iBAAiB,GAAG,OAAO,CAAC,CAAC,CAAC;YA+B7E,YAAY;CAqD3B"}

package/dist/services/ncbi/request-queue.js

@@ -5,6 +5,7 @@
  */
 import { JsonRpcErrorCode, McpError } from '@cyanheads/mcp-ts-core/errors';
 import { logger, requestContextService } from '@cyanheads/mcp-ts-core/utils';
+import { recoveryFor } from '../../services/error-contracts.js';
 const DEFAULT_MAX_QUEUE_SIZE = 100;
 /**
  * Processes NCBI API requests through a FIFO queue, inserting a configurable
@@ -22,7 +23,12 @@ export class NcbiRequestQueue {
     }
     enqueue(task, endpoint, params) {
         if (this.queue.length >= this.maxQueueSize) {
-            return Promise.reject(new McpError(JsonRpcErrorCode.RateLimited, `NCBI request queue is full (max ${this.maxQueueSize}).`, { reason: 'queue_full', endpoint, queueSize: this.queue.length }));
+            return Promise.reject(new McpError(JsonRpcErrorCode.RateLimited, `NCBI request queue is full (max ${this.maxQueueSize}).`, {
+                reason: 'queue_full',
+                endpoint,
+                queueSize: this.queue.length,
+                ...recoveryFor('queue_full'),
+            }));
         }
         return new Promise((resolve, reject) => {
             this.queue.push({

package/dist/services/ncbi/request-queue.js.map

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package/dist/services/ncbi/response-handler.d.ts

@@ -38,8 +38,13 @@ export declare class NcbiResponseHandler {
     private readonly orderedXmlParser;
     constructor();
     /**
-     * Extract a structured error from a parsed NCBI XML body and throw it via
-     * `serviceUnavailable()`. Never returns.
+     * Extract a structured error from a parsed NCBI XML body and throw it as
+     * `notFound()` for permanent "no such record" responses or `serviceUnavailable()`
+     * for transient backend failures. Never returns.
+     *
+     * NCBI returns "cannot get document summary" / "Empty id list" for invalid
+     * UIDs — these are permanent (the record doesn't exist), so we surface them
+     * as NotFound so the retry loop short-circuits instead of hammering NCBI.
      */
     private throwNcbiError;
     extractNcbiErrorMessages(parsedXml: Record<string, unknown>): string[];

package/dist/services/ncbi/response-handler.d.ts.map

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