@cyanheads/pubmed-mcp-server 2.6.6 → 2.6.7

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (6) hide show
  1. package/CLAUDE.md +7 -3
  2. package/Dockerfile +2 -2
  3. package/README.md +1 -1
  4. package/dist/config/server-config.d.ts +3 -3
  5. package/package.json +7 -7
  6. package/server.json +2 -2
package/CLAUDE.md CHANGED
@@ -1,8 +1,9 @@
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  # Agent Protocol
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  **Server:** @cyanheads/pubmed-mcp-server
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- **Version:** 2.6.6
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- **Framework:** [@cyanheads/mcp-ts-core](https://www.npmjs.com/package/@cyanheads/mcp-ts-core)
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+ **Version:** 2.6.7
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+ **Framework:** [@cyanheads/mcp-ts-core](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) `^0.8.19`
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+ **Engines:** Bun ≥1.3.2, Node ≥24.0.0
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  > **Read the framework docs first:** `node_modules/@cyanheads/mcp-ts-core/CLAUDE.md` contains the full API reference — builders, Context, error codes, exports, patterns. This file covers server-specific conventions only.
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@@ -256,19 +257,22 @@ Available skills:
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  | `add-service` | Scaffold a new service integration |
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  | `add-test` | Scaffold test file for a tool, resource, or service |
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  | `field-test` | Exercise tools/resources/prompts with real inputs, verify behavior, report issues |
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+ | `tool-defs-analysis` | Read-only audit of definition language: voice, leaks, defaults, recovery hints, examples |
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  | `security-pass` | Audit server for MCP-flavored security gaps: output injection, scope blast radius, input sinks, tenant isolation |
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  | `devcheck` | Lint, format, typecheck, audit |
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  | `polish-docs-meta` | Finalize docs, README, metadata, and agent protocol for shipping |
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  | `maintenance` | Investigate changelogs, adopt upstream changes, and sync skills after `bun update --latest` |
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  | `release-and-publish` | Ship a release: verification gate, push commits+tags, publish to npm / MCP Registry / GHCR |
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  | `api-auth` | Auth modes, scopes, JWT/OAuth |
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+ | `api-canvas` | DataCanvas: register tabular data, run SQL, export, plus the `spillover()` helper for big result sets — Tier 3 opt-in |
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  | `api-config` | AppConfig, parseConfig, env vars |
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  | `api-context` | Context interface, logger, state, progress |
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  | `api-errors` | McpError, JsonRpcErrorCode, error patterns |
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  | `api-linter` | Definition lint rules reference (`format-parity`, `schema-*`, `server-json-*`, …) |
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  | `api-services` | LLM, Speech, Graph services |
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+ | `api-telemetry` | OTel catalog: spans, metrics, completion logs, env config, cardinality rules |
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  | `api-testing` | createMockContext, test patterns |
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- | `api-utils` | Formatting, parsing, security, pagination, scheduling |
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+ | `api-utils` | Formatting, parsing, security, pagination, scheduling, telemetry helpers |
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  | `api-workers` | Cloudflare Workers runtime |
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  | `report-issue-framework` | File bug/feature request against @cyanheads/mcp-ts-core |
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  | `report-issue-local` | File bug/feature request against this server's repo |
package/Dockerfile CHANGED
@@ -4,7 +4,7 @@
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  # This stage installs all dependencies (including dev), builds the TypeScript
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  # source code into JavaScript, and prepares the production assets.
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  # ==============================================================================
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- FROM oven/bun:1 AS build
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+ FROM oven/bun:1.3 AS build
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  WORKDIR /usr/src/app
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@@ -28,7 +28,7 @@ RUN bun run build
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  # application. It uses a slim base image and only includes production
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  # dependencies and build artifacts.
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  # ==============================================================================
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- FROM oven/bun:1-slim AS production
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+ FROM oven/bun:1.3-slim AS production
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  WORKDIR /usr/src/app
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package/README.md CHANGED
@@ -7,7 +7,7 @@
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  <div align="center">
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- [![npm](https://img.shields.io/npm/v/@cyanheads/pubmed-mcp-server?style=flat-square&logo=npm&logoColor=white)](https://www.npmjs.com/package/@cyanheads/pubmed-mcp-server) [![Version](https://img.shields.io/badge/Version-2.6.6-blue.svg?style=flat-square)](./CHANGELOG.md) [![Framework](https://img.shields.io/badge/Built%20on-@cyanheads/mcp--ts--core-259?style=flat-square)](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) [![MCP SDK](https://img.shields.io/badge/MCP%20SDK-^1.29.0-green.svg?style=flat-square)](https://modelcontextprotocol.io/)
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+ [![npm](https://img.shields.io/npm/v/@cyanheads/pubmed-mcp-server?style=flat-square&logo=npm&logoColor=white)](https://www.npmjs.com/package/@cyanheads/pubmed-mcp-server) [![Version](https://img.shields.io/badge/Version-2.6.7-blue.svg?style=flat-square)](./CHANGELOG.md) [![Framework](https://img.shields.io/badge/Built%20on-@cyanheads/mcp--ts--core-259?style=flat-square)](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) [![MCP SDK](https://img.shields.io/badge/MCP%20SDK-^1.29.0-green.svg?style=flat-square)](https://modelcontextprotocol.io/)
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  [![License](https://img.shields.io/badge/License-Apache%202.0-orange.svg?style=flat-square)](./LICENSE) [![TypeScript](https://img.shields.io/badge/TypeScript-^6.0.3-3178C6.svg?style=flat-square)](https://www.typescriptlang.org/) [![Bun](https://img.shields.io/badge/Bun-v1.3.2-blueviolet.svg?style=flat-square)](https://bun.sh/)
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package/dist/config/server-config.d.ts CHANGED
@@ -6,14 +6,14 @@
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  */
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  import { z } from '@cyanheads/mcp-ts-core';
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  declare const ServerConfigSchema: z.ZodObject<{
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- apiKey: z.ZodPipe<z.ZodTransform<unknown, unknown>, z.ZodOptional<z.ZodString>>;
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+ apiKey: z.ZodPreprocess<z.ZodOptional<z.ZodString>>;
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  toolIdentifier: z.ZodDefault<z.ZodString>;
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- adminEmail: z.ZodPipe<z.ZodTransform<unknown, unknown>, z.ZodOptional<z.ZodEmail>>;
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+ adminEmail: z.ZodPreprocess<z.ZodOptional<z.ZodEmail>>;
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  requestDelayMs: z.ZodDefault<z.ZodCoercedNumber<unknown>>;
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  maxRetries: z.ZodDefault<z.ZodCoercedNumber<unknown>>;
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  timeoutMs: z.ZodDefault<z.ZodCoercedNumber<unknown>>;
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  totalDeadlineMs: z.ZodDefault<z.ZodCoercedNumber<unknown>>;
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- unpaywallEmail: z.ZodPipe<z.ZodTransform<unknown, unknown>, z.ZodOptional<z.ZodEmail>>;
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+ unpaywallEmail: z.ZodPreprocess<z.ZodOptional<z.ZodEmail>>;
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  unpaywallTimeoutMs: z.ZodDefault<z.ZodCoercedNumber<unknown>>;
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  }, z.core.$strip>;
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  export type ServerConfig = z.infer<typeof ServerConfigSchema>;
package/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "@cyanheads/pubmed-mcp-server",
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- "version": "2.6.6",
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+ "version": "2.6.7",
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  "mcpName": "io.github.cyanheads/pubmed-mcp-server",
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  "description": "MCP server for PubMed/NCBI E-utilities integration. Search articles, fetch metadata and open-access full text (PMC + Unpaywall), generate citations, explore MeSH terms, and discover related research.",
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  "type": "module",
@@ -65,29 +65,29 @@
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  "packageManager": "bun@1.3.2",
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  "engines": {
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  "bun": ">=1.3.2",
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- "node": ">=22.0.0"
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+ "node": ">=24.0.0"
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  },
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  "publishConfig": {
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  "access": "public"
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  },
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  "dependencies": {
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- "@cyanheads/mcp-ts-core": "^0.8.6",
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+ "@cyanheads/mcp-ts-core": "^0.8.19",
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  "defuddle": "^0.18.1",
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- "fast-xml-parser": "^5.7.2",
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+ "fast-xml-parser": "^5.7.3",
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  "linkedom": "^0.18.12",
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  "pino-pretty": "^13.1.3",
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  "sanitize-html": "^2.17.3",
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  "unpdf": "^1.6.2"
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  },
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  "devDependencies": {
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- "@biomejs/biome": "^2.4.13",
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- "@types/node": "^25.6.0",
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+ "@biomejs/biome": "^2.4.14",
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+ "@types/node": "^25.6.2",
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  "@types/sanitize-html": "^2.16.1",
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  "@vitest/coverage-istanbul": "^4.1.5",
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  "depcheck": "^1.4.7",
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  "fast-check": "^4.7.0",
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  "ignore": "^7.0.5",
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- "tsc-alias": "^1.8.16",
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+ "tsc-alias": "^1.8.17",
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  "typescript": "^6.0.3",
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  "vitest": "^4.1.5"
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  }
package/server.json CHANGED
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  "registryBaseUrl": "https://registry.npmjs.org",
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  "identifier": "@cyanheads/pubmed-mcp-server",
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  "runtimeHint": "bun",
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- "version": "2.6.6",
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+ "version": "2.6.7",
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  "packageArguments": [
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  {
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  "type": "positional",
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  "registryBaseUrl": "https://registry.npmjs.org",
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  "identifier": "@cyanheads/pubmed-mcp-server",
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  "runtimeHint": "bun",
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- "version": "2.6.6",
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+ "version": "2.6.7",
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  "packageArguments": [
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  {
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  "type": "positional",