npm - @cyanheads/pubmed-mcp-server - Versions diffs - 2.6.4 → 2.6.5 - Mend

@cyanheads/pubmed-mcp-server 2.6.4 → 2.6.5

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (57) hide show

package/dist/services/ncbi/ncbi-service.js CHANGED Viewed

@@ -4,8 +4,8 @@
  * typed methods for each E-utility endpoint. Uses init/accessor pattern.
  * @module src/services/ncbi/ncbi-service
  */
-import { JsonRpcErrorCode, McpError } from '@cyanheads/mcp-ts-core/errors';
-import { logger } from '@cyanheads/mcp-ts-core/utils';
+import { internalError, JsonRpcErrorCode, McpError, serializationError, timeout, } from '@cyanheads/mcp-ts-core/errors';
+import { logger, requestContextService } from '@cyanheads/mcp-ts-core/utils';
 import { getServerConfig } from '../../config/server-config.js';
 import { NcbiApiClient } from './api-client.js';
 import { NcbiRequestQueue } from './request-queue.js';
@@ -100,11 +100,12 @@ export class NcbiService {
         const spellResult = response.eSpellResult;
         const original = spellResult.Query ?? params.term ?? '';
         const corrected = spellResult.CorrectedQuery ?? '';
-        logger.debug('ESpell result parsed.', {
+        logger.debug('ESpell result parsed.', requestContextService.createRequestContext({
+            operation: 'NcbiESpell',
             original,
             corrected,
             hasSuggestion: corrected.length > 0 && corrected !== original,
-        });
+        }));
         return {
             original,
             corrected: corrected || original,
@@ -177,8 +178,8 @@ export class NcbiService {
         try {
             parsed = JSON.parse(text);
         }
-        catch {
-            throw new McpError(JsonRpcErrorCode.SerializationError, 'Failed to parse ID Converter JSON response.', { responseSnippet: text.substring(0, 200) });
+        catch (error) {
+            throw serializationError('Failed to parse ID Converter JSON response.', { responseSnippet: text.substring(0, 200) }, { cause: error });
         }
         return parsed.records ?? [];
     }
@@ -207,9 +208,7 @@ export class NcbiService {
         }
         catch (error) {
             if (error instanceof NcbiDeadlineExceeded) {
-                throw new McpError(JsonRpcErrorCode.Timeout, error.message, {
-                    deadlineMs: this.totalDeadlineMs,
-                });
+                throw timeout(error.message, { reason: 'ncbi_deadline_exceeded', deadlineMs: this.totalDeadlineMs }, { cause: error });
             }
             throw error;
         }
@@ -243,21 +242,26 @@ export class NcbiService {
                     const baseDelay = Math.min(1000 * 2 ** attempt, NcbiService.MAX_BACKOFF_MS);
                     const jitter = baseDelay * (0.75 + 0.5 * Math.random()); // ±25%
                     const retryDelay = Math.round(jitter);
-                    logger.warning(`NCBI request to ${label} failed. Retrying (${attempt + 1}/${this.maxRetries}) in ${retryDelay}ms.`, { endpoint: label, attempt: attempt + 1, retryDelay });
+                    logger.warning(`NCBI request to ${label} failed. Retrying (${attempt + 1}/${this.maxRetries}) in ${retryDelay}ms.`, requestContextService.createRequestContext({
+                        operation: 'NcbiRetry',
+                        endpoint: label,
+                        attempt: attempt + 1,
+                        retryDelay,
+                    }));
                     await abortableSleep(retryDelay, signal);
                     continue;
                 }
                 const attempts = this.maxRetries + 1;
                 const msg = error instanceof Error ? error.message : String(error);
-                throw new McpError(error.code, `${msg} (failed after ${attempts} attempts)`, {
-                    endpoint: label,
-                    attempts,
-                });
+                // Tag transient ServiceUnavailable retries-exhausted with `ncbi_unreachable` so
+                // tool callers can switch on a stable reason. Other retryable codes (Timeout,
+                // RateLimited) keep their original code with no reason — `ncbi_deadline_exceeded`
+                // and `queue_full` are stamped at their own throw sites.
+                const reason = error.code === JsonRpcErrorCode.ServiceUnavailable ? 'ncbi_unreachable' : undefined;
+                throw new McpError(error.code, `${msg} (failed after ${attempts} attempts)`, { ...(reason && { reason }), endpoint: label, attempts }, { cause: error });
             }
         }
-        throw new McpError(JsonRpcErrorCode.InternalError, 'Request failed after all retries.', {
-            endpoint: label,
-        });
+        throw internalError('Request failed after all retries.', { endpoint: label });
     }
     /**
      * Enqueues a request with a service-level deadline and retry logic that covers
@@ -293,12 +297,13 @@ export function initNcbiService() {
     const queue = new NcbiRequestQueue(config.requestDelayMs);
     const responseHandler = new NcbiResponseHandler();
     _service = new NcbiService(apiClient, queue, responseHandler, config.maxRetries, config.totalDeadlineMs);
-    logger.info('NCBI service initialized.', {
+    logger.info('NCBI service initialized.', requestContextService.createRequestContext({
+        operation: 'NcbiInit',
         toolIdentifier: config.toolIdentifier,
         hasApiKey: !!config.apiKey,
         requestDelayMs: config.requestDelayMs,
         totalDeadlineMs: config.totalDeadlineMs,
-    });
+    }));
 }
 /** Get the initialized NCBI service. Throws if not initialized. */
 export function getNcbiService() {

package/dist/services/ncbi/ncbi-service.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/services/ncbi/request-queue.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/services/ncbi/request-queue.js CHANGED Viewed

@@ -4,7 +4,7 @@
  * @module src/services/ncbi/request-queue
  */
 import { JsonRpcErrorCode, McpError } from '@cyanheads/mcp-ts-core/errors';
-import { logger } from '@cyanheads/mcp-ts-core/utils';
+import { logger, requestContextService } from '@cyanheads/mcp-ts-core/utils';
 const DEFAULT_MAX_QUEUE_SIZE = 100;
 /**
  * Processes NCBI API requests through a FIFO queue, inserting a configurable
@@ -22,7 +22,7 @@ export class NcbiRequestQueue {
     }
     enqueue(task, endpoint, params) {
         if (this.queue.length >= this.maxQueueSize) {
-            return Promise.reject(new McpError(JsonRpcErrorCode.RateLimited, `NCBI request queue is full (max ${this.maxQueueSize}).`, { endpoint, queueSize: this.queue.length }));
+            return Promise.reject(new McpError(JsonRpcErrorCode.RateLimited, `NCBI request queue is full (max ${this.maxQueueSize}).`, { reason: 'queue_full', endpoint, queueSize: this.queue.length }));
         }
         return new Promise((resolve, reject) => {
             this.queue.push({
@@ -52,24 +52,24 @@ export class NcbiRequestQueue {
             const elapsed = now - this.lastRequestTime;
             const wait = this.delayMs - elapsed;
             if (wait > 0) {
-                logger.debug(`Delaying NCBI request by ${wait}ms to respect rate limit.`, {
+                logger.debug(`Delaying NCBI request by ${wait}ms to respect rate limit.`, requestContextService.createRequestContext({
+                    operation: 'NcbiQueueWait',
                     endpoint,
                     delayMs: wait,
-                });
+                }));
                 await new Promise((r) => setTimeout(r, wait));
             }
             this.lastRequestTime = Date.now();
-            logger.info(`Executing NCBI request via queue: ${endpoint}`, {
-                endpoint,
-            });
+            logger.info(`Executing NCBI request via queue: ${endpoint}`, requestContextService.createRequestContext({ operation: 'NcbiQueueDispatch', endpoint }));
             const result = await task();
             resolve(result);
         }
         catch (error) {
-            logger.error('Error processing NCBI request from queue.', {
+            logger.error('Error processing NCBI request from queue.', requestContextService.createRequestContext({
+                operation: 'NcbiQueueProcess',
                 endpoint,
                 errorMessage: error instanceof Error ? error.message : String(error),
-            });
+            }));
             reject(error);
         }
         finally {

package/dist/services/ncbi/request-queue.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/services/ncbi/response-handler.d.ts CHANGED Viewed

@@ -38,8 +38,8 @@ export declare class NcbiResponseHandler {
     private readonly orderedXmlParser;
     constructor();
     /**
-     * Extract a structured error from a parsed NCBI XML body and throw it as an
-     * `McpError`. Never returns.
+     * Extract a structured error from a parsed NCBI XML body and throw it via
+     * `serviceUnavailable()`. Never returns.
      */
     private throwNcbiError;
     extractNcbiErrorMessages(parsedXml: Record<string, unknown>): string[];

package/dist/services/ncbi/response-handler.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"response-handler.d.ts","sourceRoot":"","sources":["../../../src/services/ncbi/response-handler.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAMH,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAC;AAsLrD;;;;;;;;;;;;;;;;GAgBG;AACH,wBAAgB,mBAAmB,CAAC,GAAG,EAAE,MAAM,GAAG,MAAM,CAMvD;AAED;;;GAGG;AACH,qBAAa,mBAAmB;IAC9B,OAAO,CAAC,QAAQ,CAAC,SAAS,CAAgB;IAC1C;;;;;OAKG;IACH,OAAO,CAAC,QAAQ,CAAC,gBAAgB,CAAgB;;IAsBjD;;;OAGG;IACH,OAAO,CAAC,cAAc;IAgBtB,wBAAwB,CAAC,SAAS,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,GAAG,MAAM,EAAE;IAsBtE,sBAAsB,CAAC,CAAC,EACtB,YAAY,EAAE,MAAM,EACpB,QAAQ,EAAE,MAAM,EAChB,OAAO,CAAC,EAAE,kBAAkB,GAC3B,CAAC;CA8KL"}

package/dist/services/ncbi/response-handler.js CHANGED Viewed

@@ -4,8 +4,8 @@
  * NCBI's inconsistent XML structures where single-element lists are collapsed to scalars.
  * @module src/services/ncbi/response-handler
  */
-import { JsonRpcErrorCode, McpError } from '@cyanheads/mcp-ts-core/errors';
-import { logger } from '@cyanheads/mcp-ts-core/utils';
+import { serializationError, serviceUnavailable } from '@cyanheads/mcp-ts-core/errors';
+import { logger, requestContextService } from '@cyanheads/mcp-ts-core/utils';
 import { XMLParser as FastXmlParser, XMLValidator } from 'fast-xml-parser';
 /**
  * jpaths that NCBI may return as either a single value or an array.
@@ -232,16 +232,20 @@ export class NcbiResponseHandler {
         });
     }
     /**
-     * Extract a structured error from a parsed NCBI XML body and throw it as an
-     * `McpError`. Never returns.
+     * Extract a structured error from a parsed NCBI XML body and throw it via
+     * `serviceUnavailable()`. Never returns.
      */
     throwNcbiError(parsedXml, endpoint) {
         const errorMessages = this.extractNcbiErrorMessages(parsedXml);
-        logger.error('NCBI API returned an error in XML response.', {
+        logger.error('NCBI API returned an error in XML response.', requestContextService.createRequestContext({
+            operation: 'NcbiXmlError',
             endpoint,
             errors: errorMessages,
+        }));
+        throw serviceUnavailable(`NCBI API Error: ${errorMessages.join('; ')}`, {
+            endpoint,
+            ncbiErrors: errorMessages,
         });
-        throw new McpError(JsonRpcErrorCode.ServiceUnavailable, `NCBI API Error: ${errorMessages.join('; ')}`, { endpoint, ncbiErrors: errorMessages });
     }
     extractNcbiErrorMessages(parsedXml) {
         const messages = [];
@@ -264,26 +268,36 @@ export class NcbiResponseHandler {
     parseAndHandleResponse(responseText, endpoint, options) {
         const retmode = options?.retmode ?? 'xml';
         if (retmode === 'text') {
-            logger.debug('Received text response from NCBI.', { endpoint, retmode });
+            logger.debug('Received text response from NCBI.', requestContextService.createRequestContext({
+                operation: 'NcbiParseText',
+                endpoint,
+                retmode,
+            }));
             return responseText;
         }
         if (retmode === 'xml') {
-            logger.debug('Parsing XML response from NCBI.', { endpoint, retmode });
+            logger.debug('Parsing XML response from NCBI.', requestContextService.createRequestContext({
+                operation: 'NcbiParseXml',
+                endpoint,
+                retmode,
+            }));
             const xmlForValidation = responseText.replace(/<!DOCTYPE[^>]*>/gi, '');
             const validationResult = XMLValidator.validate(xmlForValidation);
             if (validationResult !== true) {
                 const isHtml = /^\s*<(!DOCTYPE\s+html|html[\s>])/i.test(responseText);
                 if (isHtml) {
-                    logger.warning('NCBI returned HTML instead of XML (likely rate-limited).', {
+                    logger.warning('NCBI returned HTML instead of XML (likely rate-limited).', requestContextService.createRequestContext({
+                        operation: 'NcbiHtmlResponse',
                         endpoint,
-                    });
-                    throw new McpError(JsonRpcErrorCode.ServiceUnavailable, 'NCBI API returned an HTML response instead of XML — likely rate-limited.', { endpoint });
+                    }));
+                    throw serviceUnavailable('NCBI API returned an HTML response instead of XML — likely rate-limited.', { endpoint });
                 }
-                logger.error('Invalid XML response from NCBI.', {
+                logger.error('Invalid XML response from NCBI.', requestContextService.createRequestContext({
+                    operation: 'NcbiInvalidXml',
                     endpoint,
                     responseSnippet: responseText.substring(0, 500),
-                });
-                throw new McpError(JsonRpcErrorCode.SerializationError, 'Received invalid XML from NCBI.', {
+                }));
+                throw serializationError('Received invalid XML from NCBI.', {
                     endpoint,
                     responseSnippet: responseText.substring(0, 200),
                 });
@@ -307,16 +321,17 @@ export class NcbiResponseHandler {
             }
             catch (error) {
                 const parserError = error instanceof Error ? error.message : String(error);
-                logger.error('Failed to parse validated XML response from NCBI.', {
+                logger.error('Failed to parse validated XML response from NCBI.', requestContextService.createRequestContext({
+                    operation: 'NcbiXmlParseError',
                     endpoint,
                     parserError,
                     responseSnippet: responseText.substring(0, 500),
-                });
-                throw new McpError(JsonRpcErrorCode.SerializationError, `Failed to parse XML response from NCBI: ${parserError}`, {
+                }));
+                throw serializationError(`Failed to parse XML response from NCBI: ${parserError}`, {
                     endpoint,
                     parserError,
                     responseSnippet: responseText.substring(0, 200),
-                });
+                }, { cause: error });
             }
             if (!useOrdered) {
                 const parsedObj = parsedXml;
@@ -326,39 +341,45 @@ export class NcbiResponseHandler {
                 }
             }
             if (options?.returnRawXml) {
-                logger.debug('Returning raw XML string after validation.', { endpoint });
+                logger.debug('Returning raw XML string after validation.', requestContextService.createRequestContext({ operation: 'NcbiRawXml', endpoint }));
                 return responseText;
             }
-            logger.debug('Successfully parsed XML response.', { endpoint });
+            logger.debug('Successfully parsed XML response.', requestContextService.createRequestContext({ operation: 'NcbiParseXmlOk', endpoint }));
             return parsedXml;
         }
         if (retmode === 'json') {
-            logger.debug('Parsing JSON response from NCBI.', { endpoint, retmode });
+            logger.debug('Parsing JSON response from NCBI.', requestContextService.createRequestContext({
+                operation: 'NcbiParseJson',
+                endpoint,
+                retmode,
+            }));
             let parsed;
             try {
                 parsed = JSON.parse(responseText);
             }
-            catch {
-                throw new McpError(JsonRpcErrorCode.SerializationError, 'Failed to parse NCBI JSON response.', { endpoint, responseSnippet: responseText.substring(0, 200) });
+            catch (error) {
+                throw serializationError('Failed to parse NCBI JSON response.', { endpoint, responseSnippet: responseText.substring(0, 200) }, { cause: error });
             }
             if (parsed && typeof parsed === 'object' && 'error' in parsed) {
                 const errorMessage = String(parsed.error);
-                logger.error('NCBI API returned an error in JSON response.', {
+                logger.error('NCBI API returned an error in JSON response.', requestContextService.createRequestContext({
+                    operation: 'NcbiJsonError',
                     endpoint,
                     error: errorMessage,
-                });
-                throw new McpError(JsonRpcErrorCode.ServiceUnavailable, `NCBI API Error: ${errorMessage}`, {
+                }));
+                throw serviceUnavailable(`NCBI API Error: ${errorMessage}`, {
                     endpoint,
                     ncbiError: errorMessage,
                 });
             }
-            logger.debug('Successfully parsed JSON response.', { endpoint });
+            logger.debug('Successfully parsed JSON response.', requestContextService.createRequestContext({ operation: 'NcbiParseJsonOk', endpoint }));
             return parsed;
         }
-        logger.warning(`Unhandled retmode "${retmode}". Returning raw response text.`, {
+        logger.warning(`Unhandled retmode "${retmode}". Returning raw response text.`, requestContextService.createRequestContext({
+            operation: 'NcbiUnknownRetmode',
             endpoint,
             retmode,
-        });
+        }));
         return responseText;
     }
 }

package/dist/services/ncbi/response-handler.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/services/unpaywall/unpaywall-service.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"unpaywall-service.d.ts","sourceRoot":"","sources":["../../../src/services/unpaywall/unpaywall-service.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;~~AAMH~~,OAAO,EAEL,KAAK,gBAAgB,EACrB,KAAK,iBAAiB,EACtB,KAAK,mBAAmB,EAEzB,MAAM,YAAY,CAAC;AAIpB;;;GAGG;AACH,qBAAa,gBAAgB;IAEzB,OAAO,CAAC,QAAQ,CAAC,KAAK;IACtB,OAAO,CAAC,QAAQ,CAAC,SAAS;gBADT,KAAK,EAAE,MAAM,EACb,SAAS,EAAE,MAAM;IAGpC;;;;OAIG;IACG,OAAO,CAAC,GAAG,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,WAAW,GAAG,OAAO,CAAC,mBAAmB,CAAC;~~IAkD9E~~;;;;;OAKG;IACG,YAAY,CAAC,QAAQ,EAAE,iBAAiB,EAAE,MAAM,CAAC,EAAE,WAAW,GAAG,OAAO,CAAC,gBAAgB,CAAC;~~YAkBlF~~,OAAO;~~CAqDtB~~;AAiBD;;;;GAIG;AACH,wBAAgB,oBAAoB,IAAI,IAAI,~~CAU3C~~;AAED,qFAAqF;AACrF,wBAAgB,mBAAmB,IAAI,gBAAgB,GAAG,SAAS,CAElE"}
1	+ {"version":3,"file":"unpaywall-service.d.ts","sourceRoot":"","sources":["../../../src/services/unpaywall/unpaywall-service.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAWH,OAAO,EAEL,KAAK,gBAAgB,EACrB,KAAK,iBAAiB,EACtB,KAAK,mBAAmB,EAEzB,MAAM,YAAY,CAAC;AAIpB;;;GAGG;AACH,qBAAa,gBAAgB;IAEzB,OAAO,CAAC,QAAQ,CAAC,KAAK;IACtB,OAAO,CAAC,QAAQ,CAAC,SAAS;gBADT,KAAK,EAAE,MAAM,EACb,SAAS,EAAE,MAAM;IAGpC;;;;OAIG;IACG,OAAO,CAAC,GAAG,EAAE,MAAM,EAAE,MAAM,CAAC,EAAE,WAAW,GAAG,OAAO,CAAC,mBAAmB,CAAC;IAsD9E;;;;;OAKG;IACG,YAAY,CAAC,QAAQ,EAAE,iBAAiB,EAAE,MAAM,CAAC,EAAE,WAAW,GAAG,OAAO,CAAC,gBAAgB,CAAC;YAsBlF,OAAO;CA8CtB;AAiBD;;;;GAIG;AACH,wBAAgB,oBAAoB,IAAI,IAAI,CAc3C;AAED,qFAAqF;AACrF,wBAAgB,mBAAmB,IAAI,gBAAgB,GAAG,SAAS,CAElE"}

package/dist/services/unpaywall/unpaywall-service.js CHANGED Viewed

@@ -7,8 +7,8 @@
  * resolution; only genuine service failures (5xx, network, timeout) throw.
  * @module src/services/unpaywall/unpaywall-service
  */
-import { JsonRpcErrorCode, McpError } from '@cyanheads/mcp-ts-core/errors';
-import { fetchWithTimeout, logger, requestContextService } from '@cyanheads/mcp-ts-core/utils';
+import { serviceUnavailable } from '@cyanheads/mcp-ts-core/errors';
+import { fetchWithTimeout, httpErrorFromResponse, logger, requestContextService, } from '@cyanheads/mcp-ts-core/utils';
 import { getServerConfig } from '../../config/server-config.js';
 import { UNPAYWALL_API_BASE, } from './types.js';
 const USER_AGENT = 'pubmed-mcp-server (+https://github.com/cyanheads/pubmed-mcp-server)';
@@ -43,9 +43,7 @@ export class UnpaywallService {
         }
         catch (error) {
             const msg = error instanceof Error ? error.message : String(error);
-            throw new McpError(JsonRpcErrorCode.ServiceUnavailable, `Unpaywall request failed: ${msg}`, {
-                doi: normalized,
-            });
+            throw serviceUnavailable(`Unpaywall request failed: ${msg}`, { doi: normalized }, { cause: error });
         }
         if (response.status === 404)
             return { kind: 'no-oa', reason: 'DOI unknown to Unpaywall' };
@@ -53,9 +51,11 @@ export class UnpaywallService {
             return { kind: 'no-oa', reason: 'Invalid DOI format' };
         if (!response.ok) {
             const body = await response.text().catch(() => '');
-            throw new McpError(response.status >= 500
-                ? JsonRpcErrorCode.ServiceUnavailable
-                : JsonRpcErrorCode.InvalidRequest, `Unpaywall returned HTTP ${response.status}.`, { doi: normalized, status: response.status, body: body.substring(0, 300) });
+            throw await httpErrorFromResponse(response, {
+                service: 'Unpaywall',
+                captureBody: false,
+                data: { doi: normalized, body: body.substring(0, 300) },
+            });
         }
         const data = (await response.json());
         if (!data.is_oa)
@@ -63,12 +63,13 @@ export class UnpaywallService {
         const location = data.best_oa_location ?? data.oa_locations?.[0];
         if (!location?.url)
             return { kind: 'no-oa', reason: 'OA flagged but no usable location URL' };
-        logger.debug('Unpaywall resolved DOI', {
+        logger.debug('Unpaywall resolved DOI', requestContextService.createRequestContext({
+            operation: 'UnpaywallResolved',
             doi: normalized,
             hostType: location.host_type ?? null,
             license: location.license ?? null,
             version: location.version ?? null,
-        });
+        }));
         return { kind: 'found', location };
     }
     /**
@@ -85,10 +86,11 @@ export class UnpaywallService {
                 return await this.fetchAs(pdfUrl, 'pdf', signal);
             }
             catch (pdfErr) {
-                logger.debug('Unpaywall PDF fetch failed; falling back to HTML URL', {
+                logger.debug('Unpaywall PDF fetch failed; falling back to HTML URL', requestContextService.createRequestContext({
+                    operation: 'UnpaywallPdfFallback',
                     url: pdfUrl,
                     error: pdfErr instanceof Error ? pdfErr.message : String(pdfErr),
-                });
+                }));
             }
         }
         return this.fetchAs(htmlUrl, 'auto', signal);
@@ -112,12 +114,13 @@ export class UnpaywallService {
         }
         catch (error) {
             const msg = error instanceof Error ? error.message : String(error);
-            throw new McpError(JsonRpcErrorCode.ServiceUnavailable, `Unpaywall content fetch failed: ${msg}`, { url });
+            throw serviceUnavailable(`Unpaywall content fetch failed: ${msg}`, { url }, { cause: error });
         }
         if (!response.ok) {
-            throw new McpError(response.status >= 500
-                ? JsonRpcErrorCode.ServiceUnavailable
-                : JsonRpcErrorCode.InvalidRequest, `Unpaywall content fetch returned HTTP ${response.status}.`, { url, status: response.status });
+            throw await httpErrorFromResponse(response, {
+                service: 'Unpaywall content fetch',
+                data: { url },
+            });
         }
         const contentType = response.headers.get('content-type')?.toLowerCase() ?? '';
         const fetchedUrl = response.url || url;
@@ -154,9 +157,10 @@ export function initUnpaywallService() {
         return;
     }
     _service = new UnpaywallService(config.unpaywallEmail, config.unpaywallTimeoutMs);
-    logger.info('Unpaywall service initialized.', {
+    logger.info('Unpaywall service initialized.', requestContextService.createRequestContext({
+        operation: 'UnpaywallInit',
         timeoutMs: config.unpaywallTimeoutMs,
-    });
+    }));
 }
 /** Returns the initialized service, or `undefined` when the fallback is disabled. */
 export function getUnpaywallService() {

package/dist/services/unpaywall/unpaywall-service.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/package.json CHANGED Viewed

@@ -1,6 +1,6 @@
 {
   "name": "@cyanheads/pubmed-mcp-server",
-  "version": "2.6.4",
+  "version": "2.6.5",
   "mcpName": "io.github.cyanheads/pubmed-mcp-server",
   "description": "MCP server for PubMed/NCBI E-utilities integration. Search articles, fetch metadata and open-access full text (PMC + Unpaywall), generate citations, explore MeSH terms, and discover related research.",
   "type": "module",
@@ -73,13 +73,13 @@
     "access": "public"
   },
   "dependencies": {
-    "@cyanheads/mcp-ts-core": "^0.7.5",
+    "@cyanheads/mcp-ts-core": "^0.8.2",
     "defuddle": "^0.18.1",
     "fast-xml-parser": "^5.7.2",
     "linkedom": "^0.18.12",
     "pino-pretty": "^13.1.3",
     "sanitize-html": "^2.17.3",
-    "unpdf": "^1.6.0"
+    "unpdf": "^1.6.1"
   },
   "devDependencies": {
     "@biomejs/biome": "^2.4.13",
@@ -87,6 +87,7 @@
     "@types/sanitize-html": "^2.16.1",
     "@vitest/coverage-istanbul": "^4.1.5",
     "depcheck": "^1.4.7",
+    "fast-check": "^4.7.0",
     "ignore": "^7.0.5",
     "tsc-alias": "^1.8.16",
     "typescript": "^6.0.3",