@cyanheads/pubmed-mcp-server 2.6.10 → 2.6.11

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Files changed (9) hide show
  1. package/CLAUDE.md +2 -2
  2. package/README.md +1 -1
  3. package/dist/index.js +1 -0
  4. package/dist/index.js.map +1 -1
  5. package/dist/services/ncbi/response-handler.d.ts.map +1 -1
  6. package/dist/services/ncbi/response-handler.js +8 -0
  7. package/dist/services/ncbi/response-handler.js.map +1 -1
  8. package/package.json +7 -7
  9. package/server.json +3 -3
package/CLAUDE.md CHANGED
@@ -1,8 +1,8 @@
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  # Agent Protocol
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  **Server:** @cyanheads/pubmed-mcp-server
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- **Version:** 2.6.10
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- **Framework:** [@cyanheads/mcp-ts-core](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) `^0.8.20`
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+ **Version:** 2.6.11
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+ **Framework:** [@cyanheads/mcp-ts-core](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) `^0.9.0`
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  **Engines:** Bun ≥1.3.2, Node ≥24.0.0
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  > **Read the framework docs first:** `node_modules/@cyanheads/mcp-ts-core/CLAUDE.md` contains the full API reference — builders, Context, error codes, exports, patterns. This file covers server-specific conventions only.
package/README.md CHANGED
@@ -7,7 +7,7 @@
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  <div align="center">
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- [![npm](https://img.shields.io/npm/v/@cyanheads/pubmed-mcp-server?style=flat-square&logo=npm&logoColor=white)](https://www.npmjs.com/package/@cyanheads/pubmed-mcp-server) [![Version](https://img.shields.io/badge/Version-2.6.10-blue.svg?style=flat-square)](./CHANGELOG.md) [![Framework](https://img.shields.io/badge/Built%20on-@cyanheads/mcp--ts--core-259?style=flat-square)](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) [![MCP SDK](https://img.shields.io/badge/MCP%20SDK-^1.29.0-green.svg?style=flat-square)](https://modelcontextprotocol.io/)
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+ [![npm](https://img.shields.io/npm/v/@cyanheads/pubmed-mcp-server?style=flat-square&logo=npm&logoColor=white)](https://www.npmjs.com/package/@cyanheads/pubmed-mcp-server) [![Version](https://img.shields.io/badge/Version-2.6.11-blue.svg?style=flat-square)](./CHANGELOG.md) [![Framework](https://img.shields.io/badge/Built%20on-@cyanheads/mcp--ts--core-259?style=flat-square)](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) [![MCP SDK](https://img.shields.io/badge/MCP%20SDK-^1.29.0-green.svg?style=flat-square)](https://modelcontextprotocol.io/)
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  [![License](https://img.shields.io/badge/License-Apache%202.0-orange.svg?style=flat-square)](./LICENSE) [![TypeScript](https://img.shields.io/badge/TypeScript-^6.0.3-3178C6.svg?style=flat-square)](https://www.typescriptlang.org/) [![Bun](https://img.shields.io/badge/Bun-v1.3.2-blueviolet.svg?style=flat-square)](https://bun.sh/)
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package/dist/index.js CHANGED
@@ -31,6 +31,7 @@ await createApp({
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  ],
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  resources: [databaseInfoResource],
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  prompts: [researchPlanPrompt],
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+ instructions: "PubMed/NCBI E-utilities wrapper. Typical research flow: `pubmed_search_articles` → `pubmed_fetch_articles` (metadata) → `pubmed_fetch_fulltext`. Prefer `pubmed_lookup_citation` over free-text search when you have a partial known reference — it's deterministic. Use `pubmed_lookup_mesh` and `pubmed_spell_check` to refine queries before searching, when needed.",
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  landing: {
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  tagline: 'Search PubMed, fetch articles, generate citations, explore MeSH terms, and discover related research.',
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  repoRoot: 'https://github.com/cyanheads/pubmed-mcp-server',
package/dist/index.js.map CHANGED
@@ -1 +1 @@
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package/dist/services/ncbi/response-handler.d.ts.map CHANGED
@@ -1 +1 @@
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package/dist/services/ncbi/response-handler.js CHANGED
@@ -6,6 +6,14 @@
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  */
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  import { notFound, serializationError, serviceUnavailable } from '@cyanheads/mcp-ts-core/errors';
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  import { logger, requestContextService } from '@cyanheads/mcp-ts-core/utils';
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+ /**
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+ * fast-xml-parser is pinned to `~5.7.3` in package.json. 5.8.0 deprecates
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+ * `XMLValidator` in favor of a new sibling package `fast-xml-validator`
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+ * (published days before the deprecation, 0 dependents, by the same author).
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+ * 5.8.0 carries no security fix or feature we need, so we stay on 5.7.x until
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+ * `fast-xml-validator` has time in the wild. Re-evaluate during a future
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+ * `maintenance` pass — if `bun update --latest` bumps this, restore the pin.
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+ */
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  import { XMLParser as FastXmlParser, XMLValidator } from 'fast-xml-parser';
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  import { recoveryFor } from '../../services/error-contracts.js';
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  /**
package/dist/services/ncbi/response-handler.js.map CHANGED
@@ -1 +1 @@
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- 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package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@cyanheads/pubmed-mcp-server",
3
- "version": "2.6.10",
3
+ "version": "2.6.11",
4
4
  "mcpName": "io.github.cyanheads/pubmed-mcp-server",
5
5
  "description": "MCP server for PubMed/NCBI E-utilities integration. Search articles, fetch metadata and open-access full text (PMC + Unpaywall), generate citations, explore MeSH terms, and discover related research.",
6
6
  "type": "module",
@@ -71,9 +71,9 @@
71
71
  "access": "public"
72
72
  },
73
73
  "dependencies": {
74
- "@cyanheads/mcp-ts-core": "^0.8.20",
74
+ "@cyanheads/mcp-ts-core": "^0.9.0",
75
75
  "defuddle": "^0.18.1",
76
- "fast-xml-parser": "^5.7.3",
76
+ "fast-xml-parser": "~5.7.3",
77
77
  "linkedom": "^0.18.12",
78
78
  "pino-pretty": "^13.1.3",
79
79
  "sanitize-html": "^2.17.3",
@@ -81,14 +81,14 @@
81
81
  },
82
82
  "devDependencies": {
83
83
  "@biomejs/biome": "^2.4.15",
84
- "@types/node": "^25.6.2",
84
+ "@types/node": "^25.7.0",
85
85
  "@types/sanitize-html": "^2.16.1",
86
- "@vitest/coverage-istanbul": "^4.1.5",
86
+ "@vitest/coverage-istanbul": "^4.1.6",
87
87
  "depcheck": "^1.4.7",
88
- "fast-check": "^4.7.0",
88
+ "fast-check": "^4.8.0",
89
89
  "ignore": "^7.0.5",
90
90
  "tsc-alias": "^1.8.17",
91
91
  "typescript": "^6.0.3",
92
- "vitest": "^4.1.5"
92
+ "vitest": "^4.1.6"
93
93
  }
94
94
  }
package/server.json CHANGED
@@ -6,7 +6,7 @@
6
6
  "url": "https://github.com/cyanheads/pubmed-mcp-server",
7
7
  "source": "github"
8
8
  },
9
- "version": "2.6.10",
9
+ "version": "2.6.11",
10
10
  "remotes": [
11
11
  {
12
12
  "type": "streamable-http",
@@ -19,7 +19,7 @@
19
19
  "registryBaseUrl": "https://registry.npmjs.org",
20
20
  "identifier": "@cyanheads/pubmed-mcp-server",
21
21
  "runtimeHint": "bun",
22
- "version": "2.6.10",
22
+ "version": "2.6.11",
23
23
  "packageArguments": [
24
24
  {
25
25
  "type": "positional",
@@ -66,7 +66,7 @@
66
66
  "registryBaseUrl": "https://registry.npmjs.org",
67
67
  "identifier": "@cyanheads/pubmed-mcp-server",
68
68
  "runtimeHint": "bun",
69
- "version": "2.6.10",
69
+ "version": "2.6.11",
70
70
  "packageArguments": [
71
71
  {
72
72
  "type": "positional",