@cyanheads/pubmed-mcp-server 2.10.9 → 2.10.11

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (83) hide show
  1. package/AGENTS.md +1 -1
  2. package/CLAUDE.md +1 -1
  3. package/README.md +13 -5
  4. package/dist/mcp-server/tools/definitions/_schemas.d.ts +16 -0
  5. package/dist/mcp-server/tools/definitions/_schemas.d.ts.map +1 -1
  6. package/dist/mcp-server/tools/definitions/_schemas.js +20 -0
  7. package/dist/mcp-server/tools/definitions/_schemas.js.map +1 -1
  8. package/dist/mcp-server/tools/definitions/convert-ids.tool.d.ts +6 -0
  9. package/dist/mcp-server/tools/definitions/convert-ids.tool.d.ts.map +1 -1
  10. package/dist/mcp-server/tools/definitions/convert-ids.tool.js +28 -3
  11. package/dist/mcp-server/tools/definitions/convert-ids.tool.js.map +1 -1
  12. package/dist/mcp-server/tools/definitions/fetch-articles.tool.d.ts +27 -0
  13. package/dist/mcp-server/tools/definitions/fetch-articles.tool.d.ts.map +1 -1
  14. package/dist/mcp-server/tools/definitions/fetch-articles.tool.js +166 -24
  15. package/dist/mcp-server/tools/definitions/fetch-articles.tool.js.map +1 -1
  16. package/dist/mcp-server/tools/definitions/fetch-fulltext.tool.d.ts +18 -0
  17. package/dist/mcp-server/tools/definitions/fetch-fulltext.tool.d.ts.map +1 -1
  18. package/dist/mcp-server/tools/definitions/fetch-fulltext.tool.js +307 -68
  19. package/dist/mcp-server/tools/definitions/fetch-fulltext.tool.js.map +1 -1
  20. package/dist/mcp-server/tools/definitions/find-related.tool.d.ts +12 -0
  21. package/dist/mcp-server/tools/definitions/find-related.tool.d.ts.map +1 -1
  22. package/dist/mcp-server/tools/definitions/find-related.tool.js +171 -27
  23. package/dist/mcp-server/tools/definitions/find-related.tool.js.map +1 -1
  24. package/dist/mcp-server/tools/definitions/format-citations.tool.d.ts.map +1 -1
  25. package/dist/mcp-server/tools/definitions/format-citations.tool.js +11 -13
  26. package/dist/mcp-server/tools/definitions/format-citations.tool.js.map +1 -1
  27. package/dist/mcp-server/tools/definitions/lookup-citation.tool.d.ts.map +1 -1
  28. package/dist/mcp-server/tools/definitions/lookup-citation.tool.js +42 -8
  29. package/dist/mcp-server/tools/definitions/lookup-citation.tool.js.map +1 -1
  30. package/dist/mcp-server/tools/definitions/lookup-mesh.tool.d.ts +6 -0
  31. package/dist/mcp-server/tools/definitions/lookup-mesh.tool.d.ts.map +1 -1
  32. package/dist/mcp-server/tools/definitions/lookup-mesh.tool.js +14 -3
  33. package/dist/mcp-server/tools/definitions/lookup-mesh.tool.js.map +1 -1
  34. package/dist/mcp-server/tools/definitions/search-articles.tool.d.ts +10 -0
  35. package/dist/mcp-server/tools/definitions/search-articles.tool.d.ts.map +1 -1
  36. package/dist/mcp-server/tools/definitions/search-articles.tool.js +52 -5
  37. package/dist/mcp-server/tools/definitions/search-articles.tool.js.map +1 -1
  38. package/dist/mcp-server/tools/definitions/spell-check.tool.d.ts +6 -0
  39. package/dist/mcp-server/tools/definitions/spell-check.tool.d.ts.map +1 -1
  40. package/dist/mcp-server/tools/definitions/spell-check.tool.js +15 -3
  41. package/dist/mcp-server/tools/definitions/spell-check.tool.js.map +1 -1
  42. package/dist/services/error-contracts.d.ts +39 -2
  43. package/dist/services/error-contracts.d.ts.map +1 -1
  44. package/dist/services/error-contracts.js +43 -2
  45. package/dist/services/error-contracts.js.map +1 -1
  46. package/dist/services/ncbi/formatting/citation-formatter.d.ts +0 -29
  47. package/dist/services/ncbi/formatting/citation-formatter.d.ts.map +1 -1
  48. package/dist/services/ncbi/formatting/citation-formatter.js +381 -30
  49. package/dist/services/ncbi/formatting/citation-formatter.js.map +1 -1
  50. package/dist/services/ncbi/ncbi-service.d.ts +3 -2
  51. package/dist/services/ncbi/ncbi-service.d.ts.map +1 -1
  52. package/dist/services/ncbi/ncbi-service.js +22 -10
  53. package/dist/services/ncbi/ncbi-service.js.map +1 -1
  54. package/dist/services/ncbi/parsing/article-parser.d.ts +45 -2
  55. package/dist/services/ncbi/parsing/article-parser.d.ts.map +1 -1
  56. package/dist/services/ncbi/parsing/article-parser.js +208 -1
  57. package/dist/services/ncbi/parsing/article-parser.js.map +1 -1
  58. package/dist/services/ncbi/parsing/esummary-parser.d.ts.map +1 -1
  59. package/dist/services/ncbi/parsing/esummary-parser.js +32 -1
  60. package/dist/services/ncbi/parsing/esummary-parser.js.map +1 -1
  61. package/dist/services/ncbi/parsing/pmc-article-parser.d.ts +24 -4
  62. package/dist/services/ncbi/parsing/pmc-article-parser.d.ts.map +1 -1
  63. package/dist/services/ncbi/parsing/pmc-article-parser.js +505 -57
  64. package/dist/services/ncbi/parsing/pmc-article-parser.js.map +1 -1
  65. package/dist/services/ncbi/response-handler.d.ts.map +1 -1
  66. package/dist/services/ncbi/response-handler.js +42 -1
  67. package/dist/services/ncbi/response-handler.js.map +1 -1
  68. package/dist/services/ncbi/types.d.ts +215 -2
  69. package/dist/services/ncbi/types.d.ts.map +1 -1
  70. package/dist/services/openalex/api-client.d.ts +13 -4
  71. package/dist/services/openalex/api-client.d.ts.map +1 -1
  72. package/dist/services/openalex/api-client.js +19 -8
  73. package/dist/services/openalex/api-client.js.map +1 -1
  74. package/dist/services/openalex/openalex-service.d.ts +34 -17
  75. package/dist/services/openalex/openalex-service.d.ts.map +1 -1
  76. package/dist/services/openalex/openalex-service.js +119 -35
  77. package/dist/services/openalex/openalex-service.js.map +1 -1
  78. package/dist/services/openalex/types.d.ts +34 -1
  79. package/dist/services/openalex/types.d.ts.map +1 -1
  80. package/dist/services/openalex/types.js +20 -0
  81. package/dist/services/openalex/types.js.map +1 -1
  82. package/package.json +1 -1
  83. package/server.json +3 -3
package/dist/services/ncbi/parsing/pmc-article-parser.js.map CHANGED
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+ {"version":3,"file":"response-handler.d.ts","sourceRoot":"","sources":["../../../src/services/ncbi/response-handler.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAsBH,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAC;AAmNrD;;;;;;;;;;;;;;;;GAgBG;AACH,wBAAgB,mBAAmB,CAAC,GAAG,EAAE,MAAM,GAAG,MAAM,CAMvD;AAeD;;;GAGG;AACH,qBAAa,mBAAmB;IAC9B,OAAO,CAAC,QAAQ,CAAC,SAAS,CAAgB;IAC1C;;;;OAIG;IACH,OAAO,CAAC,QAAQ,CAAC,gBAAgB,CAAgB;IACjD;;;;;;;;;OASG;IACH,OAAO,CAAC,QAAQ,CAAC,iBAAiB,CAAgB;IAElD,cAcC;IAED;;;;;;;;OAQG;IACH,OAAO,CAAC,cAAc;IA2BtB,wBAAwB,CAAC,SAAS,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,GAAG,MAAM,EAAE,CAoBrE;IAED,sBAAsB,CAAC,CAAC,EACtB,YAAY,EAAE,MAAM,EACpB,QAAQ,EAAE,MAAM,EAChB,OAAO,CAAC,EAAE,kBAAkB,GAC3B,CAAC,CAsOH;CACF"}
package/dist/services/ncbi/response-handler.js CHANGED
@@ -19,14 +19,26 @@ import { logger, requestContextService } from '@cyanheads/mcp-ts-core/utils';
19
19
  import { XMLParser as FastXmlParser, XMLValidator } from 'fast-xml-parser';
20
20
  import { recoveryFor } from '../error-contracts.js';
21
21
  import { ORDERED_XML_PARSER_OPTIONS, XML_PROCESS_ENTITIES_OPTIONS, } from './parsing/ordered-xml-parser-options.js';
22
+ import { decodeHtmlEntities } from './parsing/text-helpers.js';
22
23
  /**
23
24
  * jpaths that NCBI may return as either a single value or an array.
24
25
  * The `isArray` callback forces these to always parse as arrays for consistency.
26
+ *
27
+ * A jpath is the **full** dotted path from the document root, so only an entry
28
+ * that spells out every ancestor matches. Read sites still pass values through
29
+ * `ensureArray`, which is what makes the shorter, ancestor-less entries below
30
+ * harmless.
25
31
  */
26
32
  const NCBI_ARRAY_JPATHS = new Set([
27
33
  'IdList.Id',
28
34
  'eSearchResult.IdList.Id',
29
35
  'PubmedArticleSet.PubmedArticle',
36
+ 'PubmedArticleSet.PubmedBookArticle',
37
+ 'PubmedArticleSet.PubmedBookArticle.BookDocument.AuthorList',
38
+ 'PubmedArticleSet.PubmedBookArticle.BookDocument.PublicationType',
39
+ 'PubmedArticleSet.PubmedBookArticle.BookDocument.Book.AuthorList',
40
+ 'PubmedArticleSet.PubmedBookArticle.BookDocument.Book.ELocationID',
41
+ 'PubmedArticleSet.PubmedBookArticle.BookDocument.Book.Isbn',
30
42
  'PubmedArticleSet.DeleteCitation.PMID',
31
43
  'AuthorList.Author',
32
44
  'AffiliationInfo',
@@ -134,6 +146,11 @@ const ERROR_TAG_REGEX = /<ERROR(?:\s[^>]*)?>/;
134
146
  * Unicode superscript map. Covers digits, common operators, and the few
135
147
  * letters that have superscript codepoints (n, i). `−` (U+2212, the proper
136
148
  * minus) is normalized to U+207B alongside ASCII `-`.
149
+ *
150
+ * `®` and `™` map to themselves. They have no superscript codepoint because
151
+ * they need none — the glyphs are already raised, and the `<sup>` around them
152
+ * (`GeneReviews<sup>&#xae;</sup>`) is presentation, not content. Without an
153
+ * entry the `^` fallback fires and a book title renders `GeneReviews^®`. (#114)
137
154
  */
138
155
  const SUPERSCRIPT_MAP = {
139
156
  '0': '⁰',
@@ -154,6 +171,8 @@ const SUPERSCRIPT_MAP = {
154
171
  ')': '⁾',
155
172
  n: 'ⁿ',
156
173
  i: 'ⁱ',
174
+ '®': '®',
175
+ '™': '™',
157
176
  };
158
177
  /**
159
178
  * Unicode subscript map. Covers digits and operators; alphabetic subscripts
@@ -178,9 +197,19 @@ const SUBSCRIPT_MAP = {
178
197
  '(': '₍',
179
198
  ')': '₎',
180
199
  };
200
+ /**
201
+ * Map one `<sup>`/`<sub>` payload, or fall back to the ASCII prefix form.
202
+ *
203
+ * Lookup runs on the decoded text because this pass happens before the XML
204
+ * parser: a registered mark reaches it as `&#xae;`, not `®`, and a per-character
205
+ * lookup over the entity's own characters can only ever miss. The fallback
206
+ * returns the *original* content, so an unmappable payload keeps whatever
207
+ * encoding it arrived in and the string stays valid XML for the parser that
208
+ * follows — nothing in either table decodes to `&`, `<` or `>`.
209
+ */
181
210
  function mapInlineContent(content, table, asciiPrefix) {
182
211
  let out = '';
183
- for (const ch of content) {
212
+ for (const ch of decodeHtmlEntities(content)) {
184
213
  const mapped = table[ch];
185
214
  if (mapped === undefined)
186
215
  return `${asciiPrefix}${content}`;
@@ -212,6 +241,17 @@ export function flattenInlineMarkup(xml) {
212
241
  .replace(/<inf>([^<]*)<\/inf>/g, (_, c) => mapInlineContent(c, SUBSCRIPT_MAP, '_'))
213
242
  .replace(/<\/?(?:i|b|u|sc)>/g, '');
214
243
  }
244
+ /**
245
+ * Keeps `Book/Isbn` out of fast-xml-parser's numeric coercion.
246
+ *
247
+ * An ISBN-10 can start with a zero (`0309605393`); coerced, it becomes the
248
+ * number 309605393 and the leading digit is gone before any read site sees it,
249
+ * so the record ships a wrong ISBN with no error anywhere. The processor's
250
+ * contract does the work: returning `undefined` leaves the raw text alone,
251
+ * while returning the value unchanged for every other tag keeps the existing
252
+ * coercion exactly as it was. (#114)
253
+ */
254
+ const preserveIsbnText = (tagName, tagValue) => tagName === 'Isbn' ? undefined : tagValue;
215
255
  /**
216
256
  * Parses NCBI E-utility responses (XML, JSON, text) and checks for NCBI-specific
217
257
  * error structures embedded in response bodies.
@@ -243,6 +283,7 @@ export class NcbiResponseHandler {
243
283
  processEntities: XML_PROCESS_ENTITIES_OPTIONS,
244
284
  htmlEntities: true,
245
285
  isArray: (_name, jpath) => NCBI_ARRAY_JPATHS.has(jpath),
286
+ tagValueProcessor: preserveIsbnText,
246
287
  };
247
288
  this.xmlParser = new FastXmlParser({ ...flatOptions, parseTagValue: true });
248
289
  this.verbatimXmlParser = new FastXmlParser({ ...flatOptions, parseTagValue: false });
package/dist/services/ncbi/response-handler.js.map CHANGED
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1
+ 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package/dist/services/ncbi/types.d.ts CHANGED
@@ -93,6 +93,11 @@ export interface XmlAuthor {
93
93
  }
94
94
  export interface XmlAuthorList {
95
95
  '@_CompleteYN'?: 'Y' | 'N';
96
+ /**
97
+ * `authors` or `editors` — the DTD declares it `#IMPLIED`, and a `Book` can
98
+ * carry one list of each. Never infer the role from position: read this.
99
+ */
100
+ '@_Type'?: 'authors' | 'editors';
96
101
  Author?: XmlAuthor[] | XmlAuthor;
97
102
  }
98
103
  export interface XmlPublicationType extends XmlTextElement {
@@ -220,11 +225,75 @@ export interface XmlPubmedArticle {
220
225
  ReferenceList?: unknown;
221
226
  };
222
227
  }
228
+ /** `Book/Publisher` — the citation's imprint. */
229
+ export interface XmlPublisher {
230
+ PublisherLocation?: XmlTextElement;
231
+ PublisherName?: XmlTextElement;
232
+ }
233
+ /**
234
+ * `BookDocument/Book` — the containing book. `AuthorList` is repeatable and
235
+ * carries a `Type` attribute distinguishing the book's editors from its authors.
236
+ */
237
+ export interface XmlBook {
238
+ AuthorList?: XmlAuthorList[] | XmlAuthorList;
239
+ BeginningDate?: XmlPubDate;
240
+ BookTitle?: XmlTextElement | string;
241
+ CollectionTitle?: XmlTextElement | string;
242
+ Edition?: XmlTextElement;
243
+ ELocationID?: XmlELocationID[] | XmlELocationID;
244
+ EndingDate?: XmlPubDate;
245
+ /** Repeatable — two ISBNs on one record is normal (print and electronic). */
246
+ Isbn?: XmlTextElement[] | XmlTextElement | string | string[];
247
+ Medium?: XmlTextElement;
248
+ PubDate?: XmlPubDate;
249
+ Publisher?: XmlPublisher;
250
+ ReportNumber?: XmlTextElement;
251
+ Volume?: XmlTextElement;
252
+ VolumeTitle?: XmlTextElement;
253
+ }
254
+ /**
255
+ * `PubmedBookArticle/BookDocument` — one Bookshelf record. `ArticleTitle` is
256
+ * absent on a whole-book record, which is what separates it from a chapter.
257
+ * `PublicationType` sits directly on the document, not inside a
258
+ * `PublicationTypeList` as it does for a journal article.
259
+ *
260
+ * `Sections`, `ReferenceList` and `ItemList` are deliberately not declared:
261
+ * chapter body content is out of scope, metadata and abstract only.
262
+ */
263
+ export interface XmlBookDocument {
264
+ Abstract?: XmlAbstract;
265
+ ArticleIdList?: XmlArticleIdList;
266
+ ArticleTitle?: XmlTextElement | string;
267
+ AuthorList?: XmlAuthorList[] | XmlAuthorList;
268
+ Book: XmlBook;
269
+ ContributionDate?: XmlArticleDate;
270
+ DateRevised?: XmlArticleDate;
271
+ KeywordList?: XmlKeywordList[] | XmlKeywordList;
272
+ Language?: XmlTextElement[] | XmlTextElement;
273
+ LocationLabel?: XmlTextElement[] | XmlTextElement;
274
+ Pagination?: XmlPagination;
275
+ PMID: XmlPMID;
276
+ PublicationType?: XmlPublicationType[] | XmlPublicationType;
277
+ VernacularTitle?: XmlTextElement;
278
+ }
279
+ export interface XmlPubmedBookArticle {
280
+ BookDocument: XmlBookDocument;
281
+ PubmedBookData?: {
282
+ ArticleIdList?: XmlArticleIdList;
283
+ History?: {
284
+ PubMedPubDate: (XmlArticleDate & {
285
+ '@_PubStatus'?: string;
286
+ })[];
287
+ };
288
+ PublicationStatus?: XmlTextElement;
289
+ };
290
+ }
223
291
  export interface XmlPubmedArticleSet {
224
292
  DeleteCitation?: {
225
293
  PMID: XmlPMID[] | XmlPMID;
226
294
  };
227
295
  PubmedArticle?: XmlPubmedArticle[] | XmlPubmedArticle;
296
+ PubmedBookArticle?: XmlPubmedBookArticle[] | XmlPubmedBookArticle;
228
297
  }
229
298
  export interface ParsedArticleAuthor {
230
299
  affiliationIndices?: number[];
@@ -248,6 +317,15 @@ export interface ParsedJournalPublicationDate {
248
317
  }
249
318
  export interface ParsedJournalInfo {
250
319
  eIssn?: string;
320
+ /**
321
+ * Electronic article locator from `ELocationID` — the publisher-assigned
322
+ * article number carried by journals that do not paginate. Distinct from
323
+ * {@link pages} and never a substitute for it; DOI-typed `ELocationID`
324
+ * entries are excluded, since the DOI has its own field.
325
+ */
326
+ elocationId?: string;
327
+ /** `EIdType` of the locator (e.g. `pii`). Free-form — NCBI's DTD is open. */
328
+ elocationIdType?: string;
251
329
  isoAbbreviation?: string;
252
330
  issn?: string;
253
331
  issue?: string;
@@ -273,19 +351,83 @@ export interface ParsedGrant {
273
351
  country?: string;
274
352
  grantId?: string;
275
353
  }
354
+ /**
355
+ * Which kind of record a {@link ParsedArticle} came from. PubMed's own
356
+ * `publicationTypes` cannot carry this — a Bookshelf record's `PublicationType`
357
+ * is `Review` or `Study Guide`, never anything book-shaped — so the distinction
358
+ * is made here, at parse time, from the element the record arrived in. (#114)
359
+ *
360
+ * - `journal-article` — a `PubmedArticle`.
361
+ * - `book-chapter` — a `BookDocument` carrying its own `ArticleTitle`.
362
+ * - `book` — a `BookDocument` with no `ArticleTitle`: the whole book is the record.
363
+ */
364
+ export type ParsedRecordType = 'journal-article' | 'book-chapter' | 'book';
365
+ /**
366
+ * An editor of the containing book. Deliberately narrower than
367
+ * {@link ParsedArticleAuthor} — name parts only, no affiliations or ORCID.
368
+ * Editors are a citation credit, not a contributor record, and the framework's
369
+ * `format-parity` linter stops walking at depth 8: reusing the author shape
370
+ * would put `book.editors[].affiliationIndices[]` at exactly that limit, with no
371
+ * headroom for any later field. Assignable to {@link ParsedArticleAuthor}, so
372
+ * the citation formatters' author helpers take an editor unchanged.
373
+ */
374
+ export interface ParsedBookEditor {
375
+ /** Group editor, e.g. a committee. Kept so such an entry is not silently dropped. */
376
+ collectiveName?: string;
377
+ firstName?: string;
378
+ initials?: string;
379
+ lastName?: string;
380
+ }
381
+ /**
382
+ * The containing book of a `book-chapter`, or the book itself for a `book`
383
+ * record. Present only on those two record types — never synthesized, and never
384
+ * a stand-in for {@link ParsedJournalInfo}.
385
+ */
386
+ export interface ParsedBookInfo {
387
+ /** NCBI Bookshelf accession (`NBK1247`) — resolves at `ncbi.nlm.nih.gov/books/<accession>/`. */
388
+ accession?: string;
389
+ /** First year of a continuously-updated book (GeneReviews runs 1993 →). */
390
+ beginningDate?: string;
391
+ /** Series the book belongs to, e.g. "The National Academies Collection". */
392
+ collectionTitle?: string;
393
+ /** Book-level DOI from `Book/ELocationID`. Distinct from the record's own `doi`. */
394
+ doi?: string;
395
+ edition?: string;
396
+ editors?: ParsedBookEditor[];
397
+ /** Last year of a closed date range. Absent while a book is still being updated. */
398
+ endingDate?: string;
399
+ /** Every `Book/Isbn`, verbatim — leading zeros intact, print and electronic alike. */
400
+ isbns?: string[];
401
+ /** `Book/Medium` — `Internet` wherever NCBI supplies it. */
402
+ medium?: string;
403
+ /** Year from `Book/PubDate`. */
404
+ pubDate?: string;
405
+ publisher?: string;
406
+ publisherLocation?: string;
407
+ title?: string;
408
+ }
276
409
  export interface ParsedArticle {
277
410
  abstractText?: string;
278
411
  affiliations?: string[];
279
412
  articleDates?: ParsedArticleDate[];
280
413
  authors?: ParsedArticleAuthor[];
414
+ /** Set on `book-chapter` and `book` records only. */
415
+ book?: ParsedBookInfo;
281
416
  doi?: string;
282
417
  grantList?: ParsedGrant[];
418
+ /**
419
+ * Absent on `book-chapter` and `book` records — a Bookshelf record has no
420
+ * journal, and the book title is never promoted into one.
421
+ */
283
422
  journalInfo?: ParsedJournalInfo;
284
423
  keywords?: string[];
285
424
  meshTerms?: ParsedMeshTerm[];
286
425
  pmcId?: string;
287
426
  pmid: string;
288
427
  publicationTypes?: string[];
428
+ /** Discriminator — read this, never the title or `publicationTypes`. */
429
+ recordType: ParsedRecordType;
430
+ /** Chapter title, or the book title on a whole-book record. */
289
431
  title?: string;
290
432
  }
291
433
  /**
@@ -355,7 +497,11 @@ export interface ESummaryDocumentSummary {
355
497
  Authors?: XmlESummaryAuthorRaw[] | {
356
498
  Author: XmlESummaryAuthorRaw[] | XmlESummaryAuthorRaw;
357
499
  } | string;
500
+ /** Containing book — present on a Bookshelf record, where `Source` is empty. */
501
+ BookTitle?: string;
358
502
  DOI?: string;
503
+ /** `chapter`, `book`, or `citation` (an ordinary journal article). */
504
+ DocType?: string;
359
505
  EPubDate?: string;
360
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  ESSN?: string;
361
507
  FullJournalName?: string;
@@ -368,6 +514,8 @@ export interface ESummaryDocumentSummary {
368
514
  LastAuthor?: string;
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515
  Pages?: string;
370
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  PubDate?: string;
517
+ /** Publisher of the containing book. Absent for journal records. */
518
+ PublisherName?: string;
371
519
  PubStatus?: string;
372
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  PubType?: string[];
373
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  RecordStatus?: string;
@@ -393,17 +541,34 @@ export interface ESummaryResponseContainer {
393
541
  }
394
542
  export interface ParsedBriefSummary {
395
543
  /**
396
- * Full, untruncated author roster from ESummary. `authors` collapses to three
397
- * names for display, so any check that must consider every author (e.g.
544
+ * Full, untruncated author roster from ESummary — the same people `authors`
545
+ * collapses for display, so any check that must consider every author (e.g.
398
546
  * verifying a queried author appears on the article) reads this instead.
547
+ * Editors are not in it; they are in {@link editors}.
399
548
  */
400
549
  authorNames?: string[];
401
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  authors?: string;
551
+ /**
552
+ * Containing book title. ESummary leaves `Source` and `FullJournalName` empty
553
+ * on a Bookshelf record and carries the venue here instead, so a book record
554
+ * renders with a venue rather than none. (#114)
555
+ */
556
+ bookTitle?: string;
557
+ /** ESummary `DocType` — `chapter`, `book`, or `citation` (an ordinary article). */
558
+ docType?: string;
402
559
  doi?: string;
560
+ /**
561
+ * Book editors (`AuthType=Editor`). ESummary lists them ahead of the chapter's
562
+ * own authors, so they are split out rather than allowed to displace the
563
+ * authors in the display string.
564
+ */
565
+ editors?: string[];
403
566
  epubDate?: string;
404
567
  pmcId?: string;
405
568
  pmid: string;
406
569
  pubDate?: string;
570
+ /** Publisher of the containing book. Absent for journal records. */
571
+ publisherName?: string;
407
572
  source?: string;
408
573
  title?: string;
409
574
  }
@@ -481,6 +646,8 @@ export interface ParsedPmcArticle {
481
646
  abstract?: string;
482
647
  affiliations?: string[];
483
648
  articleType?: string;
649
+ /** Figures and supplementary material, in document order. Absent when the article carries none. */
650
+ assets?: ParsedPmcAsset[];
484
651
  authors?: ParsedPmcAuthor[];
485
652
  doi?: string;
486
653
  journal?: ParsedPmcJournal;
@@ -499,6 +666,47 @@ export interface ParsedPmcArticle {
499
666
  tables?: ParsedPmcTable[];
500
667
  title?: string;
501
668
  }
669
+ /** Which captioned element an asset came from. */
670
+ export type ParsedPmcAssetType = 'figure' | 'supplementary-material';
671
+ /**
672
+ * A captioned asset lifted out of a PMC full-text article — a `<fig>` or a
673
+ * `<supplementary-material>`. Both are a caption plus a pointer that prose
674
+ * refers to by label, and a sixth of them sit outside `<body>` with no section
675
+ * to hang from, so they are reported at article level the way `tables[]` is,
676
+ * leaving a positional marker in the section text they were lifted from.
677
+ *
678
+ * Scalar leaves only: the tool-layer schema that renders these sits under the
679
+ * framework's `format-parity` walker depth cap.
680
+ *
681
+ * There is no per-asset unextractable reason, and deliberately so. A table
682
+ * promises cells, so a graphic-only deposit has to disclose that it has none; an
683
+ * asset promises a caption, and an uncaptioned supplement is still fully
684
+ * represented by its `id` and `href`, with no re-call that would produce more.
685
+ * There is no media-type field either — `mimetype`/`mime-subtype` are in the
686
+ * JATS model but appear zero times across a 68-record draw. (#130)
687
+ */
688
+ export interface ParsedPmcAsset {
689
+ /** Which element this came from. */
690
+ assetType: ParsedPmcAssetType;
691
+ /** Caption text, without the label. */
692
+ caption?: string;
693
+ /**
694
+ * The `<graphic>`/`<media>` `@xlink:href`, verbatim. A deposit-relative
695
+ * filename (`MOL2-20-1253-g001.jpg`), not a fetchable URL — no absolute form
696
+ * of it resolves. Use `pmcUrl` for the rendered article.
697
+ */
698
+ href?: string;
699
+ /** The `id` attribute, when the deposit carries one. */
700
+ id?: string;
701
+ /** Display label, e.g. `Fig. 1`. */
702
+ label?: string;
703
+ /**
704
+ * Title of the innermost enclosing `<sec>` wherever it sits — body, back
705
+ * matter, or appendix. Absent for a `<floats-group>` deposit, which sits in no
706
+ * section at all.
707
+ */
708
+ sectionTitle?: string;
709
+ }
502
710
  /** Parsed PMC author. */
503
711
  export interface ParsedPmcAuthor {
504
712
  collectiveName?: string;
@@ -507,6 +715,11 @@ export interface ParsedPmcAuthor {
507
715
  }
508
716
  /** Parsed PMC journal info. */
509
717
  export interface ParsedPmcJournal {
718
+ /**
719
+ * Electronic article locator from JATS `<elocation-id>`. JATS carries no type
720
+ * attribute, so there is no counterpart to `ParsedJournalInfo.elocationIdType`.
721
+ */
722
+ elocationId?: string;
510
723
  issn?: string;
511
724
  issue?: string;
512
725
  pages?: string;