npm - @cyanheads/pubmed-mcp-server - Versions diffs - 2.10.4 → 2.10.5 - Mend

@cyanheads/pubmed-mcp-server 2.10.4 → 2.10.5

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (23) hide show

package/AGENTS.md +2 -2
package/CLAUDE.md +2 -2
package/README.md +3 -2
package/dist/config/server-config.d.ts +4 -4
package/dist/services/europe-pmc/europe-pmc-service.d.ts.map +1 -1
package/dist/services/europe-pmc/europe-pmc-service.js +2 -1
package/dist/services/europe-pmc/europe-pmc-service.js.map +1 -1
package/dist/services/ncbi/api-client.d.ts +2 -3
package/dist/services/ncbi/api-client.d.ts.map +1 -1
package/dist/services/ncbi/api-client.js +9 -9
package/dist/services/ncbi/api-client.js.map +1 -1
package/dist/services/ncbi/ncbi-service.d.ts.map +1 -1
package/dist/services/ncbi/ncbi-service.js +2 -1
package/dist/services/ncbi/ncbi-service.js.map +1 -1
package/dist/services/openalex/openalex-service.d.ts.map +1 -1
package/dist/services/openalex/openalex-service.js +2 -1
package/dist/services/openalex/openalex-service.js.map +1 -1
package/dist/services/retry-policy.d.ts +18 -0
package/dist/services/retry-policy.d.ts.map +1 -0
package/dist/services/retry-policy.js +21 -0
package/dist/services/retry-policy.js.map +1 -0
package/package.json +8 -8
package/server.json +3 -3

package/AGENTS.md CHANGED Viewed

@@ -1,8 +1,8 @@
 # Agent Protocol
 **Server:** @cyanheads/pubmed-mcp-server
-**Version:** 2.10.4
-**Framework:** [@cyanheads/mcp-ts-core](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) `^0.12.3`
+**Version:** 2.10.5
+**Framework:** [@cyanheads/mcp-ts-core](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) `^0.12.5`
 **Engines:** Bun ≥1.3.0, Node ≥24.0.0
 > **Read the framework docs first:** `node_modules/@cyanheads/mcp-ts-core/CLAUDE.md` contains the full API reference — builders, Context, error codes, exports, patterns. This file covers server-specific conventions only.

package/CLAUDE.md CHANGED Viewed

@@ -1,8 +1,8 @@
 # Agent Protocol
 **Server:** @cyanheads/pubmed-mcp-server
-**Version:** 2.10.4
-**Framework:** [@cyanheads/mcp-ts-core](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) `^0.12.3`
+**Version:** 2.10.5
+**Framework:** [@cyanheads/mcp-ts-core](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) `^0.12.5`
 **Engines:** Bun ≥1.3.0, Node ≥24.0.0
 > **Read the framework docs first:** `node_modules/@cyanheads/mcp-ts-core/CLAUDE.md` contains the full API reference — builders, Context, error codes, exports, patterns. This file covers server-specific conventions only.

package/README.md CHANGED Viewed

@@ -9,7 +9,7 @@
-[![Version](https://img.shields.io/badge/Version-2.10.4-blue.svg?style=flat-square)](./CHANGELOG.md) [![License](https://img.shields.io/badge/License-Apache%202.0-orange.svg?style=flat-square)](./LICENSE) [![Docker](https://img.shields.io/badge/Docker-ghcr.io-2496ED?style=flat-square&logo=docker&logoColor=white)](https://github.com/users/cyanheads/packages/container/package/pubmed-mcp-server) [![MCP SDK](https://img.shields.io/badge/MCP%20SDK-^2.0.0-green.svg?style=flat-square)](https://modelcontextprotocol.io/) [![npm](https://img.shields.io/npm/v/@cyanheads/pubmed-mcp-server?style=flat-square&logo=npm&logoColor=white)](https://www.npmjs.com/package/@cyanheads/pubmed-mcp-server) [![TypeScript](https://img.shields.io/badge/TypeScript-^7.0.2-3178C6.svg?style=flat-square)](https://www.typescriptlang.org/) [![Bun](https://img.shields.io/badge/Bun-v1.4.0-blueviolet.svg?style=flat-square)](https://bun.sh/)
+[![Version](https://img.shields.io/badge/Version-2.10.5-blue.svg?style=flat-square)](./CHANGELOG.md) [![License](https://img.shields.io/badge/License-Apache%202.0-orange.svg?style=flat-square)](./LICENSE) [![Docker](https://img.shields.io/badge/Docker-ghcr.io-2496ED?style=flat-square&logo=docker&logoColor=white)](https://github.com/users/cyanheads/packages/container/package/pubmed-mcp-server) [![MCP SDK](https://img.shields.io/badge/MCP%20SDK-^2.0.0-green.svg?style=flat-square)](https://modelcontextprotocol.io/) [![npm](https://img.shields.io/npm/v/@cyanheads/pubmed-mcp-server?style=flat-square&logo=npm&logoColor=white)](https://www.npmjs.com/package/@cyanheads/pubmed-mcp-server) [![TypeScript](https://img.shields.io/badge/TypeScript-^7.0.2-3178C6.svg?style=flat-square)](https://www.typescriptlang.org/) [![Bun](https://img.shields.io/badge/Bun-v1.4.0-blueviolet.svg?style=flat-square)](https://bun.sh/)
 </div>
@@ -322,11 +322,12 @@ All configuration is validated at startup via Zod schemas in `src/config/server-
 | `MCP_TRANSPORT_TYPE` | Transport: `stdio` or `http` | `stdio` |
 | `MCP_HTTP_PORT` | HTTP server port | `3010` |
 | `MCP_HTTP_ENDPOINT_PATH` | HTTP endpoint path where the MCP server is mounted | `/mcp` |
+| `MCP_SESSION_MODE` | HTTP session mode: `stateless`, `stateful`, or `auto` (resolves to `stateful`). This server ships `stateless` — it has no `ctx.requestInput` call sites. | `stateless` |
 | `MCP_PUBLIC_URL` | Public origin override for TLS-terminating reverse-proxy deployments (landing page, Server Card, RFC 9728 metadata). | none |
 | `MCP_AUTH_MODE` | Authentication: `none`, `jwt`, or `oauth` | `none` |
 | `MCP_LOG_LEVEL` | Log level (`debug`, `info`, `warning`, `error`, etc.) | `info` |
 | `MCP_GC_PRESSURE_INTERVAL_MS` | Opt-in Bun-only forced-GC pressure loop (ms). Drains the per-request `McpServer`/`McpSessionTransport` cycle under sustained low-traffic HTTP. Recommended starting point if heap growth is observed: `60000`. | `0` (disabled) |
-| `LOGS_DIR` | Directory for log files (Node.js only). | `<project-root>/logs` |
+| `LOGS_DIR` | Directory for log files (Node.js only). Relative paths resolve against the application root. | `<app-root>/logs` |
 | `STORAGE_PROVIDER_TYPE` | Storage backend: `in-memory`, `filesystem`, `supabase`, `cloudflare-kv/r2/d1` | `in-memory` |
 | `NCBI_API_KEY` | NCBI API key for higher rate limits (10 req/s vs 3 req/s) | none |
 | `NCBI_ADMIN_EMAIL` | Contact email sent with NCBI requests (recommended by NCBI) | none |

package/dist/config/server-config.d.ts CHANGED Viewed

@@ -6,18 +6,18 @@
  */
 import { z } from '@cyanheads/mcp-ts-core';
 declare const ServerConfigSchema: z.ZodObject<{
-    apiKey: z.ZodPreprocess<z.ZodOptional<z.ZodString>>;
+    apiKey: z.ZodPreprocess<z.ZodOptional<z.ZodString>, unknown>;
     toolIdentifier: z.ZodDefault<z.ZodString>;
-    adminEmail: z.ZodPreprocess<z.ZodOptional<z.ZodEmail>>;
+    adminEmail: z.ZodPreprocess<z.ZodOptional<z.ZodEmail>, unknown>;
     requestDelayMs: z.ZodDefault<z.ZodCoercedNumber<unknown>>;
     maxConcurrent: z.ZodDefault<z.ZodCoercedNumber<unknown>>;
     maxRetries: z.ZodDefault<z.ZodCoercedNumber<unknown>>;
     timeoutMs: z.ZodDefault<z.ZodCoercedNumber<unknown>>;
     totalDeadlineMs: z.ZodDefault<z.ZodCoercedNumber<unknown>>;
-    unpaywallEmail: z.ZodPreprocess<z.ZodOptional<z.ZodEmail>>;
+    unpaywallEmail: z.ZodPreprocess<z.ZodOptional<z.ZodEmail>, unknown>;
     unpaywallTimeoutMs: z.ZodDefault<z.ZodCoercedNumber<unknown>>;
     europepmcEnabled: z.ZodDefault<z.ZodCodec<z.ZodString, z.ZodBoolean>>;
-    europepmcEmail: z.ZodPreprocess<z.ZodOptional<z.ZodEmail>>;
+    europepmcEmail: z.ZodPreprocess<z.ZodOptional<z.ZodEmail>, unknown>;
     europepmcRequestDelayMs: z.ZodDefault<z.ZodCoercedNumber<unknown>>;
     europepmcMaxRetries: z.ZodDefault<z.ZodCoercedNumber<unknown>>;
     europepmcTimeoutMs: z.ZodDefault<z.ZodCoercedNumber<unknown>>;

package/dist/services/europe-pmc/europe-pmc-service.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"europe-pmc-service.d.ts","sourceRoot":"","sources":["../../../src/services/europe-pmc/europe-pmc-service.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;GAcG;AAeH,OAAO,KAAK,EAAE,QAAQ,EAAgB,MAAM,4CAA4C,CAAC;AAGzF,OAAO,EAAE,kBAAkB,EAAE,MAAM,iBAAiB,CAAC;AACrD,OAAO,EAAE,qBAAqB,EAAE,MAAM,oBAAoB,CAAC;AAC3D,OAAO,KAAK,EACV,uBAAuB,EAEvB,kBAAkB,EAElB,sBAAsB,EACtB,kBAAkB,EAClB,qBAAqB,EAErB,qBAAqB,EACrB,eAAe,EAChB,MAAM,YAAY,CAAC;AAkDpB;;;;;;;;;GASG;AACH,qBAAa,gBAAgB;IAIzB,OAAO,CAAC,QAAQ,CAAC,MAAM;IACvB,OAAO,CAAC,QAAQ,CAAC,KAAK;IACtB,OAAO,CAAC,QAAQ,CAAC,UAAU;IAL7B,OAAO,CAAC,QAAQ,CAAC,gBAAgB,CAAY;IAE7C,YACmB,MAAM,EAAE,kBAAkB,EAC1B,KAAK,EAAE,qBAAqB,EAC5B,UAAU,EAAE,MAAM,EAiBpC;IAED;;;OAGG;IACG,MAAM,CAAC,MAAM,EAAE,qBAAqB,GAAG,OAAO,CAAC,qBAAqB,CAAC,CA6F1E;IAED;;;;;;;;;;OAUG;IACG,YAAY,CAChB,IAAI,EAAE,SAAS,kBAAkB,EAAE,EACnC,MAAM,CAAC,EAAE,WAAW,GACnB,OAAO,CAAC,kBAAkB,EAAE,CAAC,CAQ/B;IAED;;;;;;;OAOG;IACG,WAAW,CACf,MAAM,EAAE,MAAM,EACd,MAAM,EAAE,eAAe,EACvB,MAAM,CAAC,EAAE,WAAW,GACnB,OAAO,CAAC,uBAAuB,CAAC,CAgBlC;IAED;;;;;;;;;OASG;IACH,SAAS,CACP,IAAI,EAAE,MAAM,EACZ,QAAQ,EAAE,MAAM,EAChB,IAAI,EAAE,MAAM,EACZ,MAAM,CAAC,EAAE,WAAW,GACnB,OAAO,CAAC,sBAAsB,CAAC,CAQjC;IAED;;;;;;;;;OASG;IACH,UAAU,CACR,IAAI,EAAE,MAAM,EACZ,QAAQ,EAAE,MAAM,EAChB,IAAI,EAAE,MAAM,EACZ,MAAM,CAAC,EAAE,WAAW,GACnB,OAAO,CAAC,sBAAsB,CAAC,CAQjC;IAED;;;OAGG;YACW,iBAAiB;IA6C/B;;;;;;;;OAQG;IACH,gBAAgB,CAAC,GAAG,EAAE,MAAM,GAAG,QAAQ,GAAG,SAAS,CA8BlD;IAED;;;;OAIG;YACW,SAAS;CAoDxB;AAMD;;;;GAIG;AACH,wBAAgB,oBAAoB,IAAI,IAAI,CAyB3C;AAED,6EAA6E;AAC7E,wBAAgB,mBAAmB,IAAI,gBAAgB,GAAG,SAAS,CAElE"}

package/dist/services/europe-pmc/europe-pmc-service.js CHANGED Viewed

@@ -20,6 +20,7 @@ import { XMLParser, XMLValidator } from 'fast-xml-parser';
 import { getServerConfig } from '../../config/server-config.js';
 import { recoveryFor } from '../../services/error-contracts.js';
 import { ensureArray } from '../../services/ncbi/parsing/xml-helpers.js';
+import { isTransient } from '../../services/retry-policy.js';
 import { EuropePmcApiClient } from './api-client.js';
 import { EuropePmcRequestQueue } from './request-queue.js';
 /** Retryable transient codes — same set NCBI uses. */
@@ -332,7 +333,7 @@ export class EuropePmcService {
                     throw signal.reason;
                 if (!(error instanceof McpError))
                     throw error;
-                if (!RETRYABLE_CODES.has(error.code))
+                if (!isTransient(error, RETRYABLE_CODES))
                     throw error;
                 if (attempt < this.maxRetries) {
                     const baseDelay = Math.min(1000 * 2 ** attempt, MAX_BACKOFF_MS);

package/dist/services/europe-pmc/europe-pmc-service.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/services/ncbi/api-client.d.ts CHANGED Viewed

@@ -31,9 +31,8 @@ export declare class NcbiApiClient {
     private shouldPost;
     /**
      * GET an eutils endpoint. Uses plain fetch (not fetchWithTimeout) so {@link makeRequest}
-     * can inspect the response status and apply its 500→ServiceUnavailable reclassification —
-     * fetchWithTimeout throws on any non-2xx before the status can be read, which left that
-     * override unreachable.
+     * holds the failing `Response` and can build the error from it — fetchWithTimeout throws
+     * on any non-2xx before the response is reachable.
      */
     private getRequest;
     /** POST an eutils endpoint (large payloads). Plain fetch — see {@link getRequest}. */

package/dist/services/ncbi/api-client.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/services/ncbi/api-client.js CHANGED Viewed

@@ -4,7 +4,7 @@
  * retry logic lives in NcbiService.performRequest to cover both HTTP and XML-level errors.
  * @module src/services/ncbi/api-client
  */
-import { JsonRpcErrorCode, McpError, serviceUnavailable } from '@cyanheads/mcp-ts-core/errors';
+import { McpError, serviceUnavailable } from '@cyanheads/mcp-ts-core/errors';
 import { httpErrorFromResponse, logger, requestContextService } from '@cyanheads/mcp-ts-core/utils';
 import { recoveryFor } from '../../services/error-contracts.js';
 import { NCBI_EUTILS_BASE_URL } from './types.js';
@@ -34,13 +34,14 @@ export class NcbiApiClient {
                 ? await this.postRequest(url, finalParams, options?.signal)
                 : await this.getRequest(url, finalParams, options?.signal);
             if (!response.ok) {
+                /**
+                 * The framework classifies both 500 and 501 as ServiceUnavailable, so the
+                 * transient mesh-layer 500s the eutils proxy returns reach the retry loop in
+                 * NcbiService.withRetry. A 501 also carries `data.retryable: false`, which that
+                 * gate honors to fail a Not Implemented response on the first attempt.
+                 */
                 throw await httpErrorFromResponse(response, {
                     service: 'NCBI',
-                    // NCBI's eutils proxy returns HTTP 500 for transient mesh-layer failures
-                    // that are safe to retry. Reclassify as ServiceUnavailable so the retry
-                    // loop in NcbiService.withRetry picks it up — 501 (Not Implemented) is
-                    // left as InternalError since those are not transient.
-                    codeOverride: (s) => (s === 500 ? JsonRpcErrorCode.ServiceUnavailable : undefined),
                     data: { endpoint },
                 });
             }
@@ -117,9 +118,8 @@ export class NcbiApiClient {
     }
     /**
      * GET an eutils endpoint. Uses plain fetch (not fetchWithTimeout) so {@link makeRequest}
-     * can inspect the response status and apply its 500→ServiceUnavailable reclassification —
-     * fetchWithTimeout throws on any non-2xx before the status can be read, which left that
-     * override unreachable.
+     * holds the failing `Response` and can build the error from it — fetchWithTimeout throws
+     * on any non-2xx before the response is reachable.
      */
     getRequest(url, params, signal) {
         const qs = new URLSearchParams(params).toString();

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package/dist/services/ncbi/ncbi-service.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/services/ncbi/ncbi-service.js CHANGED Viewed

@@ -8,6 +8,7 @@ import { internalError, JsonRpcErrorCode, McpError, serializationError, timeout,
 import { logger, requestContextService } from '@cyanheads/mcp-ts-core/utils';
 import { getServerConfig } from '../../config/server-config.js';
 import { recoveryFor } from '../../services/error-contracts.js';
+import { isTransient } from '../../services/retry-policy.js';
 import { NcbiApiClient } from './api-client.js';
 import { NcbiRequestQueue } from './request-queue.js';
 import { NcbiResponseHandler } from './response-handler.js';
@@ -310,7 +311,7 @@ export class NcbiService {
                 if (!(error instanceof McpError)) {
                     throw error;
                 }
-                if (!NcbiService.RETRYABLE_CODES.has(error.code)) {
+                if (!isTransient(error, NcbiService.RETRYABLE_CODES)) {
                     throw error;
                 }
                 if (attempt < this.maxRetries) {

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package/dist/services/openalex/openalex-service.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"openalex-service.d.ts","sourceRoot":"","sources":["../../../src/services/openalex/openalex-service.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;GAYG;~~AAOH~~,OAAO,EAAE,iBAAiB,EAAE,MAAM,iBAAiB,CAAC;AAyCpD,gFAAgF;AAChF,qBAAa,eAAe;IAExB,OAAO,CAAC,QAAQ,CAAC,MAAM;IACvB,OAAO,CAAC,QAAQ,CAAC,UAAU;IAF7B,YACmB,MAAM,EAAE,iBAAiB,EACzB,UAAU,EAAE,MAAM,EACjC;IAEJ;;;;OAIG;IACG,OAAO,CACX,IAAI,EAAE,MAAM,EACZ,CAAC,EAAE,MAAM,EACT,MAAM,CAAC,EAAE,WAAW,GACnB,OAAO,CAAC;QAAE,KAAK,EAAE,MAAM,EAAE,CAAC;QAAC,UAAU,EAAE,MAAM,CAAA;KAAE,CAAC,CAmBlD;IAED;;;OAGG;IACG,OAAO,CACX,IAAI,EAAE,MAAM,EACZ,CAAC,EAAE,MAAM,EACT,MAAM,CAAC,EAAE,WAAW,GACnB,OAAO,CAAC;QAAE,KAAK,EAAE,MAAM,EAAE,CAAC;QAAC,UAAU,EAAE,MAAM,CAAA;KAAE,CAAC,CAgBlD;IAED;;;OAGG;IACG,UAAU,CACd,IAAI,EAAE,MAAM,EACZ,CAAC,EAAE,MAAM,EACT,MAAM,CAAC,EAAE,WAAW,GACnB,OAAO,CAAC;QAAE,KAAK,EAAE,MAAM,EAAE,CAAC;QAAC,UAAU,EAAE,MAAM,CAAA;KAAE,CAAC,CAmBlD;IAED;;;OAGG;IACH,OAAO,CAAC,YAAY;IAYpB,8EAA8E;YAChE,SAAS;CAmDxB;AAMD,yEAAyE;AACzE,wBAAgB,mBAAmB,IAAI,IAAI,CAmB1C;AAED,uEAAuE;AACvE,wBAAgB,kBAAkB,IAAI,eAAe,CAIpD;AAED,kFAAkF;AAClF,wBAAgB,0BAA0B,IAAI,eAAe,GAAG,SAAS,CAExE"}
1	+ {"version":3,"file":"openalex-service.d.ts","sourceRoot":"","sources":["../../../src/services/openalex/openalex-service.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;GAYG;AAQH,OAAO,EAAE,iBAAiB,EAAE,MAAM,iBAAiB,CAAC;AAyCpD,gFAAgF;AAChF,qBAAa,eAAe;IAExB,OAAO,CAAC,QAAQ,CAAC,MAAM;IACvB,OAAO,CAAC,QAAQ,CAAC,UAAU;IAF7B,YACmB,MAAM,EAAE,iBAAiB,EACzB,UAAU,EAAE,MAAM,EACjC;IAEJ;;;;OAIG;IACG,OAAO,CACX,IAAI,EAAE,MAAM,EACZ,CAAC,EAAE,MAAM,EACT,MAAM,CAAC,EAAE,WAAW,GACnB,OAAO,CAAC;QAAE,KAAK,EAAE,MAAM,EAAE,CAAC;QAAC,UAAU,EAAE,MAAM,CAAA;KAAE,CAAC,CAmBlD;IAED;;;OAGG;IACG,OAAO,CACX,IAAI,EAAE,MAAM,EACZ,CAAC,EAAE,MAAM,EACT,MAAM,CAAC,EAAE,WAAW,GACnB,OAAO,CAAC;QAAE,KAAK,EAAE,MAAM,EAAE,CAAC;QAAC,UAAU,EAAE,MAAM,CAAA;KAAE,CAAC,CAgBlD;IAED;;;OAGG;IACG,UAAU,CACd,IAAI,EAAE,MAAM,EACZ,CAAC,EAAE,MAAM,EACT,MAAM,CAAC,EAAE,WAAW,GACnB,OAAO,CAAC;QAAE,KAAK,EAAE,MAAM,EAAE,CAAC;QAAC,UAAU,EAAE,MAAM,CAAA;KAAE,CAAC,CAmBlD;IAED;;;OAGG;IACH,OAAO,CAAC,YAAY;IAYpB,8EAA8E;YAChE,SAAS;CAmDxB;AAMD,yEAAyE;AACzE,wBAAgB,mBAAmB,IAAI,IAAI,CAmB1C;AAED,uEAAuE;AACvE,wBAAgB,kBAAkB,IAAI,eAAe,CAIpD;AAED,kFAAkF;AAClF,wBAAgB,0BAA0B,IAAI,eAAe,GAAG,SAAS,CAExE"}

package/dist/services/openalex/openalex-service.js CHANGED Viewed

@@ -15,6 +15,7 @@ import { internalError, JsonRpcErrorCode, McpError } from '@cyanheads/mcp-ts-cor
 import { logger, requestContextService } from '@cyanheads/mcp-ts-core/utils';
 import { getServerConfig } from '../../config/server-config.js';
 import { recoveryFor } from '../../services/error-contracts.js';
+import { isTransient } from '../../services/retry-policy.js';
 import { OpenAlexApiClient } from './api-client.js';
 /** Transient codes eligible for retry. */
 const RETRYABLE_CODES = new Set([
@@ -133,7 +134,7 @@ export class OpenAlexService {
                     throw signal.reason;
                 if (!(error instanceof McpError))
                     throw error;
-                if (!RETRYABLE_CODES.has(error.code))
+                if (!isTransient(error, RETRYABLE_CODES))
                     throw error;
                 if (attempt < this.maxRetries) {
                     const baseDelay = Math.min(1000 * 2 ** attempt, MAX_BACKOFF_MS);

package/dist/services/openalex/openalex-service.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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1	+ 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package/dist/services/retry-policy.d.ts ADDED Viewed

@@ -0,0 +1,18 @@
+/**
+ * @fileoverview Shared transience check for the hand-rolled retry loops in the NCBI,
+ * OpenAlex, and Europe PMC services. Mirrors the framework's `defaultIsTransient`
+ * (`withRetry`, `@cyanheads/mcp-ts-core/utils`) so the three gates classify identically
+ * to the framework path they don't use.
+ * @module src/services/retry-policy
+ */
+import type { JsonRpcErrorCode, McpError } from '@cyanheads/mcp-ts-core/errors';
+/**
+ * Whether a thrown `McpError` should be retried. An explicit `data.retryable === false`
+ * opt-out wins over code-based classification; absent (or `true`) the code decides.
+ *
+ * The HTTP helpers stamp the opt-out on an upstream 501, which classifies as
+ * `ServiceUnavailable` — a transient code — but re-asks for a method the upstream has
+ * declared absent, so it must fail on the first attempt.
+ */
+export declare function isTransient(error: McpError, transientCodes: ReadonlySet<JsonRpcErrorCode>): boolean;
+//# sourceMappingURL=retry-policy.d.ts.map

package/dist/services/retry-policy.d.ts.map ADDED Viewed

	@@ -0,0 +1 @@
1	+ {"version":3,"file":"retry-policy.d.ts","sourceRoot":"","sources":["../../src/services/retry-policy.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAEH,OAAO,KAAK,EAAE,gBAAgB,EAAE,QAAQ,EAAE,MAAM,+BAA+B,CAAC;AAEhF;;;;;;;GAOG;AACH,wBAAgB,WAAW,CACzB,KAAK,EAAE,QAAQ,EACf,cAAc,EAAE,WAAW,CAAC,gBAAgB,CAAC,GAC5C,OAAO,CAGT"}

package/dist/services/retry-policy.js ADDED Viewed

@@ -0,0 +1,21 @@
+/**
+ * @fileoverview Shared transience check for the hand-rolled retry loops in the NCBI,
+ * OpenAlex, and Europe PMC services. Mirrors the framework's `defaultIsTransient`
+ * (`withRetry`, `@cyanheads/mcp-ts-core/utils`) so the three gates classify identically
+ * to the framework path they don't use.
+ * @module src/services/retry-policy
+ */
+/**
+ * Whether a thrown `McpError` should be retried. An explicit `data.retryable === false`
+ * opt-out wins over code-based classification; absent (or `true`) the code decides.
+ *
+ * The HTTP helpers stamp the opt-out on an upstream 501, which classifies as
+ * `ServiceUnavailable` — a transient code — but re-asks for a method the upstream has
+ * declared absent, so it must fail on the first attempt.
+ */
+export function isTransient(error, transientCodes) {
+    if (error.data?.retryable === false)
+        return false;
+    return transientCodes.has(error.code);
+}
+//# sourceMappingURL=retry-policy.js.map

package/dist/services/retry-policy.js.map ADDED Viewed

	@@ -0,0 +1 @@
1	+ {"version":3,"file":"retry-policy.js","sourceRoot":"","sources":["../../src/services/retry-policy.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAIH;;;;;;;GAOG;AACH,MAAM,UAAU,WAAW,CACzB,KAAe,EACf,cAA6C;IAE7C,IAAI,KAAK,CAAC,IAAI,EAAE,SAAS,KAAK,KAAK;QAAE,OAAO,KAAK,CAAC;IAClD,OAAO,cAAc,CAAC,GAAG,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC;AACxC,CAAC"}

package/package.json CHANGED Viewed

@@ -1,6 +1,6 @@
 {
   "name": "@cyanheads/pubmed-mcp-server",
-  "version": "2.10.4",
+  "version": "2.10.5",
   "mcpName": "io.github.cyanheads/pubmed-mcp-server",
   "description": "Search PubMed/Europe PMC, fetch articles and full text (PMC/EPMC/Unpaywall), citations, MeSH terms via MCP. STDIO or Streamable HTTP.",
   "type": "module",
@@ -81,24 +81,24 @@
     "access": "public"
   },
   "dependencies": {
-    "@cyanheads/mcp-ts-core": "^0.12.3",
-    "defuddle": "^0.19.2",
-    "fast-xml-parser": "^5.11.0",
+    "@cyanheads/mcp-ts-core": "^0.12.5",
+    "defuddle": "^0.19.3",
+    "fast-xml-parser": "^5.11.1",
     "linkedom": "^0.18.13",
     "pino-pretty": "^13.1.3",
     "sanitize-html": "^2.17.7",
     "unpdf": "^1.8.1",
-    "zod": "^4.4.3"
+    "zod": "^4.5.4"
   },
   "devDependencies": {
-    "@biomejs/biome": "^2.5.9",
+    "@biomejs/biome": "^2.5.11",
     "@socketsecurity/bun-security-scanner": "^1.1.2",
-    "@types/node": "^26.2.0",
+    "@types/node": "^26.4.0",
     "@types/sanitize-html": "^2.16.1",
     "@vitest/coverage-istanbul": "^4.1.11",
     "depcheck": "^1.4.7",
     "fast-check": "^4.9.0",
-    "ignore": "^7.0.6",
+    "ignore": "^7.0.7",
     "tsc-alias": "^1.9.2",
     "typescript": "^7.0.2",
     "vitest": "^4.1.11"

package/server.json CHANGED Viewed

@@ -6,7 +6,7 @@
     "url": "https://github.com/cyanheads/pubmed-mcp-server",
     "source": "github"
   },
-  "version": "2.10.4",
+  "version": "2.10.5",
   "remotes": [
     {
       "type": "streamable-http",
@@ -19,7 +19,7 @@
       "registryBaseUrl": "https://registry.npmjs.org",
       "identifier": "@cyanheads/pubmed-mcp-server",
       "runtimeHint": "bun",
-      "version": "2.10.4",
+      "version": "2.10.5",
       "packageArguments": [
         {
           "type": "positional",
@@ -66,7 +66,7 @@
       "registryBaseUrl": "https://registry.npmjs.org",
       "identifier": "@cyanheads/pubmed-mcp-server",
       "runtimeHint": "bun",
-      "version": "2.10.4",
+      "version": "2.10.5",
       "packageArguments": [
         {
           "type": "positional",