npm - @cyanheads/pubmed-mcp-server - Versions diffs - 2.10.21 → 2.10.22 - Mend

@cyanheads/pubmed-mcp-server 2.10.21 → 2.10.22

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (86) hide show

package/dist/mcp-server/tools/definitions/pubmed-europepmc-search.tool.js.map CHANGED Viewed

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package/dist/mcp-server/tools/definitions/spell-check.tool.d.ts CHANGED Viewed

@@ -1,8 +1,8 @@
 /**
- * @fileoverview PubMed spell-check tool. Uses NCBI's ESpell service to correct
- * every misspelled token of a PubMed search query in one call — the recovery
- * step after a zero-hit or thin `pubmed_search_articles` result. `term` is
- * accepted as an alias for `query`.
+ * @fileoverview PubMed spell-check tool. Applies NCBI ESpell's corrections to a
+ * PubMed search query in place, keeping its field tags, operators, spacing, and
+ * gene symbols — the recovery step after a zero-hit or thin
+ * `pubmed_search_articles` result. `term` is accepted as an alias for `query`.
  * @module src/mcp-server/tools/definitions/spell-check.tool
  */
 import { z } from '@cyanheads/mcp-ts-core';

package/dist/mcp-server/tools/definitions/spell-check.tool.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"spell-check.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/spell-check.tool.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAMjD,eAAO,MAAM,cAAc;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;cAwEzB,CAAC"}

package/dist/mcp-server/tools/definitions/spell-check.tool.js CHANGED Viewed

@@ -1,8 +1,8 @@
 /**
- * @fileoverview PubMed spell-check tool. Uses NCBI's ESpell service to correct
- * every misspelled token of a PubMed search query in one call — the recovery
- * step after a zero-hit or thin `pubmed_search_articles` result. `term` is
- * accepted as an alias for `query`.
+ * @fileoverview PubMed spell-check tool. Applies NCBI ESpell's corrections to a
+ * PubMed search query in place, keeping its field tags, operators, spacing, and
+ * gene symbols — the recovery step after a zero-hit or thin
+ * `pubmed_search_articles` result. `term` is accepted as an alias for `query`.
  * @module src/mcp-server/tools/definitions/spell-check.tool
  */
 import { tool, z } from '@cyanheads/mcp-ts-core';
@@ -11,7 +11,7 @@ import { getNcbiService } from '../../../services/ncbi/ncbi-service.js';
 import { conceptMeta, SCHEMA_SEARCH_ACTION } from './_concepts.js';
 import { hasVisibleText } from './_visible-text.js';
 export const spellCheckTool = tool('pubmed_spell_check', {
-    description: 'Spell-check a PubMed search query against NCBI ESpell and get the corrected query back. Use after a zero-hit or thin `pubmed_search_articles` result, or when a drug, gene, disease, or author name may be misspelled — every misspelled token is corrected in one call (`alzhiemer diseese treatmnt outcomse` → `alzheimer disease treatment outcomes`), and `hasSuggestion` is false when NCBI has no change to offer. Re-run the search with `corrected`.',
+    description: 'Spell-check a PubMed search query against NCBI ESpell and get the corrected query back. Use after a zero-hit or thin `pubmed_search_articles` result, or when a drug, gene, disease, or author name may be misspelled. Corrections are applied in place, so field tags, operators, spacing, and gene symbols stay as written (`alzhiemer diseese treatmnt outcomse` → `alzheimer disease treatment outcomes`). Words in all capitals, with digits or non-ASCII letters, or differing only in case are never changed, words after a number or symbol ESpell skips are left as written, and `hasSuggestion` is false when no correction was applied. Re-run the search with `corrected`.',
     annotations: { readOnlyHint: true, openWorldHint: true },
     _meta: conceptMeta([SCHEMA_SEARCH_ACTION]),
     sourceUrl: 'https://github.com/cyanheads/pubmed-mcp-server/blob/main/src/mcp-server/tools/definitions/spell-check.tool.ts',
@@ -27,8 +27,12 @@ export const spellCheckTool = tool('pubmed_spell_check', {
     }),
     output: z.object({
         original: z.string().describe('Original query'),
-        corrected: z.string().describe('Corrected query (same as original if no suggestion)'),
-        hasSuggestion: z.boolean().describe('Whether NCBI suggested a correction'),
+        corrected: z
+            .string()
+            .describe("The query with ESpell's accepted corrections applied in place; field tags, operators, spacing, and words in capitals or with digits are kept as written. Same as `original` when `hasSuggestion` is false."),
+        hasSuggestion: z
+            .boolean()
+            .describe('Whether at least one correction was applied to `corrected`'),
     }),
     async handler(input, ctx) {
         ctx.log.info('Executing pubmed_spell_check tool', { query: input.query });
@@ -59,7 +63,7 @@ export const spellCheckTool = tool('pubmed_spell_check', {
         return [
             {
                 type: 'text',
-                text: `No suggestion — query "${result.original}" appears correct as written.`,
+                text: `No correction applied — query "${result.original}" is returned as written.`,
             },
         ];
     },

package/dist/mcp-server/tools/definitions/spell-check.tool.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/services/error-contracts.d.ts CHANGED Viewed

@@ -149,7 +149,7 @@ export declare const EUROPEPMC_SERVICE_ERRORS: readonly [{
 }, {
     readonly reason: 'europepmc_invalid_input';
     readonly code: JsonRpcErrorCode.ValidationError;
-    readonly when: 'Europe PMC rejected the request input — an error message in place of results, an empty response to a sort with an undocumented field or no asc/desc direction, or a pagination cursor it cannot read (an empty response on the last attempt the retry budget allows, or a second HTTP 503 when the first page of the same query is served).';
+    readonly when: 'Europe PMC rejected the request input — an error message in place of results; a sort it cannot use (one whose keys are not each a field plus asc/desc, rejected before any request; an empty response to a sort with an undocumented field; or a second HTTP 503 to a sorted search when the same query without the sort is served); or a pagination cursor it cannot read (an empty response on the last attempt the retry budget allows, or a second HTTP 503 when the first page of the same query is served).';
     readonly recovery: "Fix the rejected input before retrying — the query, the sort, or the cursorMark (pass the previous response's `nextCursorMark` verbatim, or `*` to restart); the same input will most likely be rejected again.";
     readonly retryable: false;
     readonly thrownBy: 'service';

package/dist/services/error-contracts.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/services/error-contracts.js CHANGED Viewed

@@ -166,7 +166,7 @@ export const EUROPEPMC_SERVICE_ERRORS = [
     {
         reason: 'europepmc_invalid_input',
         code: JsonRpcErrorCode.ValidationError,
-        when: 'Europe PMC rejected the request input — an error message in place of results, an empty response to a sort with an undocumented field or no asc/desc direction, or a pagination cursor it cannot read (an empty response on the last attempt the retry budget allows, or a second HTTP 503 when the first page of the same query is served).',
+        when: 'Europe PMC rejected the request input — an error message in place of results; a sort it cannot use (one whose keys are not each a field plus asc/desc, rejected before any request; an empty response to a sort with an undocumented field; or a second HTTP 503 to a sorted search when the same query without the sort is served); or a pagination cursor it cannot read (an empty response on the last attempt the retry budget allows, or a second HTTP 503 when the first page of the same query is served).',
         recovery: "Fix the rejected input before retrying — the query, the sort, or the cursorMark (pass the previous response's `nextCursorMark` verbatim, or `*` to restart); the same input will most likely be rejected again.",
         retryable: false,
         thrownBy: 'service',

package/dist/services/error-contracts.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/services/europe-pmc/europe-pmc-service.d.ts CHANGED Viewed

@@ -14,10 +14,13 @@
  * A search's retry boundary covers fetch and response classification, so
  * Europe PMC's intermittent empty `{ version }` envelope is retried like an
  * HTTP outage; only a sort or cursor that explains it is reported as bad input.
- * Europe PMC answers an unreadable cursor with the HTTP 503 it uses for an
- * outage, so a 503 on a caller-supplied cursor is checked against the first
- * page of the same query, and the cursor is blamed only when a retry draws
- * the 503 again while that first page was served.
+ * A `relevance` sort is sent as none, and a sort whose keys are not each one
+ * field plus `asc`/`desc` fails before the request. Europe PMC answers an
+ * unreadable cursor, and a sort it cannot use, with the HTTP 503 it uses for an
+ * outage, so a 503 on a caller-supplied cursor or a sort is checked against the
+ * first page of the same query — with the sort for the cursor, without it for
+ * the sort — and the input is blamed only when a retry draws the 503 again
+ * while that first page was served.
  * A search reports the effective query Europe PMC echoes back, or — with no
  * echo — the source-filtered query it sent.
  *
@@ -56,14 +59,29 @@ export declare class EuropePmcService {
      * together, so an empty envelope retries like any other transient failure
      * rather than surfacing after the loop has already returned. (#159)
      *
-     * The first HTTP 503 on a caller-supplied cursor draws one probe of the same
-     * query's first page, and the cursor is retried either way: one 503 is not
-     * enough to tell a bad cursor from a transient outage. A later 503 fails the
-     * search at once as non-retryable input only when that probe was served;
-     * otherwise it goes on through the ordinary retry path. A 503 with no retry
-     * left is never probed, since nothing could use the answer. (#180)
+     * The sort is resolved before any request (see {@link effectiveSort}): a
+     * `relevance` sort is dropped, and a malformed one fails with no request.
+     *
+     * Europe PMC answers both an unreadable cursor and a sort it cannot use with
+     * the HTTP 503 it uses for an outage. The first 503 on a search carrying a
+     * caller-supplied cursor or a sort draws probes of the same query's first
+     * page, and the search is retried either way: one 503 is not enough to tell
+     * bad input from a transient outage. With a cursor, the first page with the
+     * sort is probed first (#180); when it is served, the cursor is the suspect.
+     * Otherwise, with a sort, the first page without the sort is probed — never
+     * with the caller's cursor, which Europe PMC binds to the sort that issued
+     * it — and when that is served, the sort is the suspect (#239). A later 503
+     * fails the search at once as non-retryable input naming the suspect; with
+     * no suspect it goes on through the ordinary retry path. A 503 with no retry
+     * left is never probed, since nothing could use the answer.
      */
     search(params: EuropePmcSearchParams): Promise<EuropePmcSearchResult>;
+    /**
+     * Which input, if any, explains a 503 on `request`: the caller's cursor when
+     * the first page with the same sort is served, the sort when the first page
+     * without it is served, otherwise neither.
+     */
+    private diagnose503;
     /**
      * Whether Europe PMC serves the first page of the search in `params`: one
      * request (`cursorMark: '*'`, `pageSize: 1`), paced like any other, with no
@@ -136,7 +154,9 @@ export declare class EuropePmcService {
      *
      * Throws `SerializationError` only for fundamentally invalid XML; an
      * article-free but well-formed body returns `undefined` so callers can
-     * surface a `no-epmc-fulltext` outcome without a hard failure.
+     * surface a `no-epmc-fulltext` outcome without a hard failure. Invisible
+     * characters a deposit carries inside words are dropped before parsing, as
+     * on the PMC EFetch tier. (#224)
      */
     parseFullTextXml(xml: string): JatsNode | undefined;
     /**

package/dist/services/europe-pmc/europe-pmc-service.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/services/europe-pmc/europe-pmc-service.js CHANGED Viewed

@@ -14,10 +14,13 @@
  * A search's retry boundary covers fetch and response classification, so
  * Europe PMC's intermittent empty `{ version }` envelope is retried like an
  * HTTP outage; only a sort or cursor that explains it is reported as bad input.
- * Europe PMC answers an unreadable cursor with the HTTP 503 it uses for an
- * outage, so a 503 on a caller-supplied cursor is checked against the first
- * page of the same query, and the cursor is blamed only when a retry draws
- * the 503 again while that first page was served.
+ * A `relevance` sort is sent as none, and a sort whose keys are not each one
+ * field plus `asc`/`desc` fails before the request. Europe PMC answers an
+ * unreadable cursor, and a sort it cannot use, with the HTTP 503 it uses for an
+ * outage, so a 503 on a caller-supplied cursor or a sort is checked against the
+ * first page of the same query — with the sort for the cursor, without it for
+ * the sort — and the input is blamed only when a retry draws the 503 again
+ * while that first page was served.
  * A search reports the effective query Europe PMC echoes back, or — with no
  * echo — the source-filtered query it sent.
  *
@@ -33,6 +36,7 @@ import { defaultIsTransient, logger, requestContextService, withRetry, } from '@
 import { XMLParser, XMLValidator } from 'fast-xml-parser';
 import { getServerConfig } from '../../config/server-config.js';
 import { ORDERED_XML_PARSER_OPTIONS } from '../ncbi/parsing/ordered-xml-parser-options.js';
+import { stripInvisibleFormatChars } from '../ncbi/parsing/text-helpers.js';
 import { ensureArray } from '../ncbi/parsing/xml-helpers.js';
 import { buildSearchQuery, EuropePmcApiClient } from './api-client.js';
 import { createEuropePmcRequestQueue } from './request-queue.js';
@@ -99,27 +103,60 @@ function callerCursor({ cursorMark }) {
 /** Next step for a cursor Europe PMC cannot read, whichever way it signals that. */
 const CURSOR_RECOVERY_HINT = "Pass the previous response's `nextCursorMark` verbatim as `cursorMark`, or `*` to restart from the first page.";
 /** The sort fields Europe PMC documents. */
-const DOCUMENTED_SORT_FIELDS = new Set(['P_PDATE_D', 'CITED', 'AUTH_FIRST', 'PUB_YEAR']);
+const DOCUMENTED_SORT_FIELDS = new Set([
+    'P_PDATE_D',
+    'CITED',
+    'AUTH_FIRST',
+    'PUB_YEAR',
+    'FIRST_IDATE_D',
+]);
+/** Next step for a sort Europe PMC cannot use, whichever way it signals that. */
+const SORT_RECOVERY_HINT = 'Use a documented sort (`P_PDATE_D desc`, `CITED desc`, `AUTH_FIRST asc`, `PUB_YEAR desc`, or `FIRST_IDATE_D desc`), or omit `sort` for relevance ranking.';
+/** `relevance`, alone or with `desc`: Europe PMC's default order, which it refuses as a sort. */
+const RELEVANCE_SORT_RE = /^\s*relevance(?:\s+desc)?\s*$/i;
+/** One sort key: a single field token and an `asc`/`desc` direction, any case and spacing. */
+const SORT_KEY_RE = /^\s*\S+\s+(?:asc|desc)\s*$/i;
 /**
- * Whether a sort is the likely cause of an empty `{ version }` envelope: one of
- * its comma-separated keys has a field outside the documented set, or lacks an
- * `asc`/`desc` direction. Europe PMC answers those shapes with the envelope on
- * every request, and orders by every key of a valid list (`PUB_YEAR desc, CITED
- * desc`). Field and direction compare case-insensitively and tolerate extra
- * whitespace, matching Europe PMC's own parsing.
+ * The sort a search sends. `relevance` and `relevance desc` read as no sort,
+ * since relevance is Europe PMC's default order and it refuses the word as a
+ * sort. Any other sort must be a comma-separated list of keys, each one field
+ * token plus `asc` or `desc`, or it fails here with no request: Europe PMC
+ * refuses every other shape (a key with no direction, an empty key, an extra
+ * token) on every request, with the HTTP 503 it also uses for an outage.
  *
- * Classification only, never a local allowlist: the request always goes out.
- * Europe PMC honors some undocumented fields (`ID asc` reorders results) and
- * silently ignores others (`SCORE desc`), so only the envelope itself decides.
+ * The field itself is never checked locally: Europe PMC honors some
+ * undocumented fields (`ID asc` reorders results), silently ignores others
+ * (`SCORE desc`), and refuses the rest with a 503 the search diagnoses by
+ * probing the same query unsorted. An empty or whitespace-only sort is no sort,
+ * as Europe PMC serves it. (#159, #239)
  */
-function sortExplainsEnvelope(sort) {
-    return sort.split(',').some((key) => {
-        const [field = '', direction = '', ...rest] = key.trim().split(/\s+/);
-        return (rest.length > 0 ||
-            !DOCUMENTED_SORT_FIELDS.has(field.toUpperCase()) ||
-            !/^(asc|desc)$/i.test(direction));
+function effectiveSort(sort) {
+    if (!sort?.trim() || RELEVANCE_SORT_RE.test(sort))
+        return;
+    if (sort.split(',').every((key) => SORT_KEY_RE.test(key)))
+        return sort;
+    throw validationError(`Europe PMC cannot use the sort "${sort}" — each comma-separated key needs one field and an \`asc\` or \`desc\` direction.`, {
+        reason: 'europepmc_invalid_input',
+        retryable: false,
+        sort,
+        recovery: { hint: SORT_RECOVERY_HINT },
     });
 }
+/**
+ * Whether a well-shaped sort is the likely cause of an empty `{ version }`
+ * envelope: one of its keys names a field outside the documented set. Europe
+ * PMC orders by every key of a valid list (`PUB_YEAR desc, CITED desc`); fields
+ * compare case-insensitively, matching its own parsing.
+ *
+ * Classification only, never a local allowlist: the request has already gone
+ * out, and only the envelope decides. Malformed keys never get this far —
+ * {@link effectiveSort} rejects them before the request. (#159)
+ */
+function sortExplainsEnvelope(sort) {
+    return sort
+        .split(',')
+        .some((key) => !DOCUMENTED_SORT_FIELDS.has(key.trim().split(/\s+/)[0]?.toUpperCase() ?? ''));
+}
 /**
  * Facade over the Europe PMC REST API:
  *   - `search()` — keyword search across MED/PMC/PPR/PAT/AGR.
@@ -155,38 +192,76 @@ export class EuropePmcService {
      * together, so an empty envelope retries like any other transient failure
      * rather than surfacing after the loop has already returned. (#159)
      *
-     * The first HTTP 503 on a caller-supplied cursor draws one probe of the same
-     * query's first page, and the cursor is retried either way: one 503 is not
-     * enough to tell a bad cursor from a transient outage. A later 503 fails the
-     * search at once as non-retryable input only when that probe was served;
-     * otherwise it goes on through the ordinary retry path. A 503 with no retry
-     * left is never probed, since nothing could use the answer. (#180)
+     * The sort is resolved before any request (see {@link effectiveSort}): a
+     * `relevance` sort is dropped, and a malformed one fails with no request.
+     *
+     * Europe PMC answers both an unreadable cursor and a sort it cannot use with
+     * the HTTP 503 it uses for an outage. The first 503 on a search carrying a
+     * caller-supplied cursor or a sort draws probes of the same query's first
+     * page, and the search is retried either way: one 503 is not enough to tell
+     * bad input from a transient outage. With a cursor, the first page with the
+     * sort is probed first (#180); when it is served, the cursor is the suspect.
+     * Otherwise, with a sort, the first page without the sort is probed — never
+     * with the caller's cursor, which Europe PMC binds to the sort that issued
+     * it — and when that is served, the sort is the suspect (#239). A later 503
+     * fails the search at once as non-retryable input naming the suspect; with
+     * no suspect it goes on through the ordinary retry path. A 503 with no retry
+     * left is never probed, since nothing could use the answer.
      */
-    search(params) {
-        const cursorMark = callerCursor(params);
-        let firstPage = 'unknown';
-        return this.runPaced('search', params.signal, (attempt) => this.searchOnce(params, attempt === this.maxRetries + 1), cursorMark === undefined
+    async search(params) {
+        const { sort: requestedSort, ...rest } = params;
+        const sort = effectiveSort(requestedSort);
+        const request = { ...rest, ...(sort && { sort }) };
+        const cursorMark = callerCursor(request);
+        let suspect;
+        return await this.runPaced('search', request.signal, (attempt) => this.searchOnce(request, attempt === this.maxRetries + 1), cursorMark === undefined && sort === undefined
             ? undefined
             : async (error, signal, attempt) => {
                 if (!(error instanceof McpError) || error.data?.status !== 503)
                     return error;
-                if (firstPage === 'unknown') {
+                if (suspect === undefined) {
                     if (attempt <= this.maxRetries) {
-                        firstPage = (await this.firstPageServed(params, signal)) ? 'served' : 'failed';
+                        suspect = await this.diagnose503(request, signal);
                     }
                     return error;
                 }
-                if (firstPage === 'failed')
-                    return error;
-                return validationError(`Europe PMC answered cursorMark "${cursorMark}" with HTTP 503 twice but served the first page of the same query — the cursor is most likely invalid or expired.`, {
-                    reason: 'europepmc_invalid_input',
-                    cursorMark,
-                    status: 503,
-                    retryable: false,
-                    recovery: { hint: CURSOR_RECOVERY_HINT },
-                }, { cause: error });
+                if (suspect === 'cursor') {
+                    return validationError(`Europe PMC answered cursorMark "${cursorMark}" with HTTP 503 twice but served the first page of the same query — the cursor is most likely invalid or expired.`, {
+                        reason: 'europepmc_invalid_input',
+                        cursorMark,
+                        status: 503,
+                        retryable: false,
+                        recovery: { hint: CURSOR_RECOVERY_HINT },
+                    }, { cause: error });
+                }
+                if (suspect === 'sort') {
+                    return validationError(`Europe PMC answered sort "${sort}" with HTTP 503 twice but served the same query without it — Europe PMC most likely cannot sort by it.`, {
+                        reason: 'europepmc_invalid_input',
+                        sort,
+                        status: 503,
+                        retryable: false,
+                        recovery: { hint: SORT_RECOVERY_HINT },
+                    }, { cause: error });
+                }
+                return error;
             });
     }
+    /**
+     * Which input, if any, explains a 503 on `request`: the caller's cursor when
+     * the first page with the same sort is served, the sort when the first page
+     * without it is served, otherwise neither.
+     */
+    async diagnose503(request, signal) {
+        if (callerCursor(request) !== undefined && (await this.firstPageServed(request, signal))) {
+            return 'cursor';
+        }
+        if (request.sort !== undefined) {
+            const { sort: _sort, ...unsorted } = request;
+            if (await this.firstPageServed(unsorted, signal))
+                return 'sort';
+        }
+        return 'none';
+    }
     /**
      * Whether Europe PMC serves the first page of the search in `params`: one
      * request (`cursorMark: '*'`, `pageSize: 1`), paced like any other, with no
@@ -263,15 +338,13 @@ export class EuropePmcService {
             parsed.resultList === undefined) {
             const cursorMark = callerCursor(params);
             if (params.sort && sortExplainsEnvelope(params.sort)) {
-                throw validationError(`Europe PMC silently rejected the request — most likely the sort "${params.sort}", which needs a documented field and an asc/desc direction.`, {
+                throw validationError(`Europe PMC silently rejected the request — most likely the sort "${params.sort}", which uses a field outside the documented set.`, {
                     reason: 'europepmc_invalid_input',
                     retryable: false,
                     sort: params.sort,
                     ...(cursorMark && { cursorMark }),
                     responseSnippet: text.substring(0, 200),
-                    recovery: {
-                        hint: 'Use a documented sort (`P_PDATE_D desc`, `CITED desc`, `AUTH_FIRST asc`, or `PUB_YEAR desc`), or omit `sort` for relevance ranking.',
-                    },
+                    recovery: { hint: SORT_RECOVERY_HINT },
                 });
             }
             if (cursorMark && isLastAttempt) {
@@ -433,7 +506,9 @@ export class EuropePmcService {
      *
      * Throws `SerializationError` only for fundamentally invalid XML; an
      * article-free but well-formed body returns `undefined` so callers can
-     * surface a `no-epmc-fulltext` outcome without a hard failure.
+     * surface a `no-epmc-fulltext` outcome without a hard failure. Invisible
+     * characters a deposit carries inside words are dropped before parsing, as
+     * on the PMC EFetch tier. (#224)
      */
     parseFullTextXml(xml) {
         const validationResult = XMLValidator.validate(xml.replace(/<!DOCTYPE[^>]*>/gi, ''));
@@ -445,7 +520,7 @@ export class EuropePmcService {
         }
         let parsed;
         try {
-            parsed = this.orderedXmlParser.parse(xml);
+            parsed = this.orderedXmlParser.parse(stripInvisibleFormatChars(xml));
         }
         catch (error) {
             const parserError = error instanceof Error ? error.message : String(error);

package/dist/services/europe-pmc/europe-pmc-service.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/services/europe-pmc/types.d.ts CHANGED Viewed

@@ -109,7 +109,11 @@ export interface EuropePmcSearchParams {
     /** Default `core` — richest payload with abstract, IDs, dates, license. */
     resultType?: 'core' | 'lite' | 'idlist';
     signal?: AbortSignal;
-    /** Optional sort spec, e.g. `FIRST_PIDATE desc`. */
+    /**
+     * Optional sort spec: comma-separated `<field> asc|desc` keys, e.g.
+     * `CITED desc` or `PUB_YEAR desc, CITED desc`. `relevance` (Europe PMC's
+     * default order) is sent as no sort.
+     */
     sort?: string;
     /**
      * Allowed sources, OR-joined into a `(SRC:"MED" OR ...)` clause ANDed with the