npm - @cyanheads/pubmed-mcp-server - Versions diffs - 2.10.18 → 2.10.20 - Mend

@cyanheads/pubmed-mcp-server 2.10.18 → 2.10.20

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (121) hide show

package/dist/mcp-server/tools/definitions/lookup-mesh.tool.js.map CHANGED Viewed

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package/dist/mcp-server/tools/definitions/pubmed-europepmc-fetch.tool.d.ts CHANGED Viewed

@@ -24,6 +24,7 @@ export declare const pubmedEuropepmcFetchTool: import("@cyanheads/mcp-ts-core").
         }>;
         epmcId: z.ZodString;
     }, z.core.$strip>>;
+    maxResponseCharacters: z.ZodOptional<z.ZodNumber>;
 }, z.core.$strip>, z.ZodObject<{
     records: z.ZodArray<z.ZodObject<{
         source: z.ZodEnum<{
@@ -58,6 +59,22 @@ export declare const pubmedEuropepmcFetchTool: import("@cyanheads/mcp-ts-core").
         }>;
         epmcId: z.ZodString;
     }, z.core.$strip>>>;
+    deferred: z.ZodOptional<z.ZodObject<{
+        maxResponseCharacters: z.ZodNumber;
+        returnedCharacters: z.ZodNumber;
+        deferredCount: z.ZodNumber;
+        records: z.ZodArray<z.ZodObject<{
+            source: z.ZodEnum<{
+                AGR: "AGR";
+                MED: "MED";
+                PAT: "PAT";
+                PMC: "PMC";
+                PPR: "PPR";
+            }>;
+            epmcId: z.ZodString;
+        }, z.core.$strip>>;
+        nextDeferredCharacters: z.ZodNumber;
+    }, z.core.$strip>>;
 }, z.core.$strip>, readonly [{
     readonly reason: 'europepmc_unreachable';
     readonly code: JsonRpcErrorCode.ServiceUnavailable;
@@ -75,8 +92,8 @@ export declare const pubmedEuropepmcFetchTool: import("@cyanheads/mcp-ts-core").
 }, {
     readonly reason: 'europepmc_invalid_input';
     readonly code: JsonRpcErrorCode.ValidationError;
-    readonly when: 'Europe PMC rejected the request input — an error message such as an empty query, an empty response to a sort with an undocumented field or no asc/desc direction, or an empty response to a pagination cursor on every attempt.';
-    readonly recovery: 'Adjust the input — the query, the sort, or the cursorMark — before retrying; the same input will be rejected again.';
+    readonly when: 'Europe PMC rejected the request input — an error message in place of results, an empty response to a sort with an undocumented field or no asc/desc direction, or a pagination cursor it cannot read (an empty response on the last attempt the retry budget allows, or a second HTTP 503 when the first page of the same query is served).';
+    readonly recovery: "Fix the rejected input before retrying — the query, the sort, or the cursorMark (pass the previous response's `nextCursorMark` verbatim, or `*` to restart); the same input will most likely be rejected again.";
     readonly retryable: false;
     readonly thrownBy: 'service';
 }, {
@@ -86,5 +103,6 @@ export declare const pubmedEuropepmcFetchTool: import("@cyanheads/mcp-ts-core").
     readonly recovery: 'Set EUROPEPMC_ENABLED=true (the default) and restart the server to use this tool.';
 }], {
     readonly notice: z.ZodOptional<z.ZodString>;
+    readonly truncated: z.ZodOptional<z.ZodBoolean>;
 }>;
 //# sourceMappingURL=pubmed-europepmc-fetch.tool.d.ts.map

package/dist/mcp-server/tools/definitions/pubmed-europepmc-fetch.tool.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/mcp-server/tools/definitions/pubmed-europepmc-fetch.tool.js CHANGED Viewed

@@ -17,6 +17,7 @@ import { EUROPEPMC_SERVICE_ERRORS } from '../../../services/error-contracts.js';
 import { getEuropePmcService } from '../../../services/europe-pmc/europe-pmc-service.js';
 import { EUROPEPMC_ALL_SOURCES } from '../../../services/europe-pmc/types.js';
 import { toDisplayText } from '../../../services/ncbi/parsing/text-helpers.js';
+import { fitWholeItems } from './_budget.js';
 import { conceptMeta, EDAM_ACCESSION, EDAM_DATA_RETRIEVAL, SCHEMA_SCHOLARLY_ARTICLE, } from './_concepts.js';
 import { escapeMarkdownInline } from './_text.js';
 const SourceEnum = z.enum(EUROPEPMC_ALL_SOURCES);
@@ -78,9 +79,28 @@ const FetchedRecordSchema = z
     epmcUrl: z.string().describe('Europe PMC article URL'),
 })
     .describe('Complete Europe PMC record');
+const DeferredSchema = z
+    .object({
+    maxResponseCharacters: z
+        .number()
+        .describe('The `maxResponseCharacters` ceiling this response was budgeted against'),
+    returnedCharacters: z
+        .number()
+        .describe('Serialized characters the returned records account for'),
+    deferredCount: z
+        .number()
+        .describe('Records that resolved but were withheld to stay under the ceiling'),
+    records: z
+        .array(FetchedRecordSchema.pick({ source: true, epmcId: true }).describe('One deferred record, addressed by its own `source` + `epmcId`'))
+        .describe("The deferred records, in response order, each as the resolved record's own `source` + `epmcId` — a `PMC` request answered by its `MED` record is listed as that `MED` pair. Pass them back as `records` to retrieve them. Never contains a pair from `notFound`."),
+    nextDeferredCharacters: z
+        .number()
+        .describe('Serialized size of the next deferred record — the first entry in `records`, where the response stopped. Raise `maxResponseCharacters` to at least this to make progress; a smaller record further down `records` cannot be reached until this one fits.'),
+})
+    .describe('Continuation state for records the whole-response budget withheld. Present only when `maxResponseCharacters` deferred at least one record.');
 // ─── Tool Definition ─────────────────────────────────────────────────────────
 export const pubmedEuropepmcFetchTool = tool('pubmed_europepmc_fetch', {
-    description: "Fetch complete Europe PMC records — including the full, untruncated abstract — for records addressed by `source` plus `epmcId`. Pairs with `pubmed_europepmc_search`, which returns bounded `abstractSnippet` values and flags cut ones with `abstractTruncated: true`; pass those hits' `source` and `epmcId` here to read the whole abstract. This is the retrieval path for preprint (`PPR`), patent (`PAT`), and Agricola (`AGR`) records, which frequently carry no PMID and no DOI, so `pubmed_fetch_articles` and `pubmed_fetch_fulltext` cannot address them. Up to 25 records per call.",
+    description: "Fetch complete Europe PMC records — including the full, untruncated abstract — for records addressed by `source` plus `epmcId`. Pairs with `pubmed_europepmc_search`, which returns bounded `abstractSnippet` values and flags cut ones with `abstractTruncated: true`; pass those hits' `source` and `epmcId` here to read the whole abstract. This is the retrieval path for preprint (`PPR`), patent (`PAT`), and Agricola (`AGR`) records, which frequently carry no PMID and no DOI, so `pubmed_fetch_articles` and `pubmed_fetch_fulltext` cannot address them. Up to 25 records per call. Set `maxResponseCharacters` to bound the whole response: records past the ceiling are deferred whole and listed in `deferred.records` for a follow-up call.",
     annotations: { readOnlyHint: true, openWorldHint: true },
     _meta: conceptMeta([SCHEMA_SCHOLARLY_ARTICLE, EDAM_DATA_RETRIEVAL, EDAM_ACCESSION]),
     sourceUrl: 'https://github.com/cyanheads/pubmed-mcp-server/blob/main/src/mcp-server/tools/definitions/pubmed-europepmc-fetch.tool.ts',
@@ -99,32 +119,45 @@ export const pubmedEuropepmcFetchTool = tool('pubmed_europepmc_fetch', {
             .min(1)
             .max(25)
             .describe('Records to retrieve, each addressed by the `source` and `epmcId` of a `pubmed_europepmc_search` hit. The whole batch resolves in one Europe PMC request.'),
+        maxResponseCharacters: z
+            .number()
+            .int()
+            .min(1)
+            .max(1_000_000)
+            .optional()
+            .describe('Opt-in ceiling for the whole response, in characters. Each record is measured as the JSON record it is returned as — title, authors, journal, abstract, identifiers, every field it carries. Records are kept in the order Europe PMC returned them until the next one would cross the ceiling; that record and the rest are deferred whole (never partially populated) and listed in `deferred.records`. Response envelope fields — `notFound`, `deferred` itself — are not counted. Omit to return every resolved record.'),
     }),
     output: z.object({
         records: z
             .array(FetchedRecordSchema)
-            .describe('Resolved records, in the order Europe PMC returned them'),
+            .describe('Resolved records, in the order Europe PMC returned them. Under a `maxResponseCharacters` budget, only the leading records that fit; `deferred.records` lists the rest.'),
         notFound: z
             .array(RecordRefSchema)
             .optional()
-            .describe('Requested `source` + `epmcId` pairs Europe PMC returned no record for'),
+            .describe('Requested `source` + `epmcId` pairs Europe PMC returned no record for. Reported in full regardless of where a `maxResponseCharacters` cut lands — these are misses, not deferrals.'),
+        deferred: DeferredSchema.optional(),
     }),
-    // Recovery guidance when some or all requested pairs resolve to nothing —
-    // agent-facing context, surfaced to structuredContent and content[] alike.
+    // Recovery guidance when some or all requested pairs resolve to nothing, and
+    // when the whole-response budget deferred records — agent-facing context,
+    // surfaced to structuredContent and content[] alike.
     enrichment: {
         notice: z
             .string()
             .optional()
-            .describe('Guidance when one or more requested records could not be resolved. Absent when every record came back.'),
+            .describe('Guidance when one or more requested records could not be resolved, or when `maxResponseCharacters` deferred records — naming how to retrieve them. Absent when every requested record came back.'),
+        truncated: z
+            .boolean()
+            .optional()
+            .describe('True when `maxResponseCharacters` withheld at least one resolved record. Absent when the response carries every record that resolved. The continuation state is in `deferred`.'),
     },
     async handler(input, ctx) {
         ctx.log.info('Executing pubmed_europepmc_fetch', { recordCount: input.records.length });
         const epmc = getEuropePmcService();
         if (!epmc) {
-            throw ctx.fail('europepmc_disabled', 'Europe PMC service is not available. Set EUROPEPMC_ENABLED=true to use this tool.', { ...ctx.recoveryFor('europepmc_disabled') });
+            throw ctx.fail('europepmc_disabled', 'Europe PMC service is not available. Set EUROPEPMC_ENABLED=true to use this tool.');
         }
         const hits = await epmc.fetchRecords(input.records, ctx.signal);
-        const records = hits.map((h) => {
+        const resolvedRecords = hits.map((h) => {
             // EPMC returns these as raw JSON strings carrying JATS/HTML markup,
             // un-decoded entities, and soft hyphens (no XML parser runs on them).
             // Title is the confirmed live vector — preprints carry italicized species
@@ -159,7 +192,7 @@ export const pubmedEuropepmcFetchTool = tool('pubmed_europepmc_fetch', {
         // missing over a casing difference.
         const refKey = (source, id) => `${source}:${id.toUpperCase()}`;
         const resolved = new Set();
-        for (const r of records) {
+        for (const r of resolvedRecords) {
             resolved.add(refKey(r.source, r.epmcId));
             // A `PMC` request for a PubMed-indexed article resolves to that article's
             // canonical `MED` record, which reports the requested PMCID in `pmcId`
@@ -168,33 +201,68 @@ export const pubmedEuropepmcFetchTool = tool('pubmed_europepmc_fetch', {
             if (r.pmcId)
                 resolved.add(refKey('PMC', r.pmcId));
         }
+        // Diffed against every resolved record, before the budget cut below, so a
+        // deferred record is never also reported missing.
         const notFound = input.records.filter((ref) => !resolved.has(refKey(ref.source, ref.epmcId)));
+        // Whole-response budget: fill with complete records in response order and
+        // hand the rest back as pairs the caller can re-submit. Without
+        // `maxResponseCharacters` nothing is measured and the response is exactly
+        // what it was before the budget existed. (#188)
+        const ceiling = input.maxResponseCharacters;
+        const fit = ceiling === undefined ? undefined : fitWholeItems(resolvedRecords, ceiling);
+        const records = fit?.kept ?? resolvedRecords;
+        const deferred = ceiling !== undefined && fit?.nextDeferredCharacters !== undefined
+            ? {
+                maxResponseCharacters: ceiling,
+                returnedCharacters: fit.keptCharacters,
+                deferredCount: fit.deferred.length,
+                records: fit.deferred.map((r) => ({ source: r.source, epmcId: r.epmcId })),
+                nextDeferredCharacters: fit.nextDeferredCharacters,
+            }
+            : undefined;
         ctx.log.info('pubmed_europepmc_fetch completed', {
             requested: input.records.length,
             returned: records.length,
+            ...(deferred && { deferred: deferred.deferredCount }),
         });
         // An unresolved id shaped like a PMCID is reachable by another route:
         // pubmed_fetch_fulltext addresses PMCIDs directly, with no `source` pair.
         const pmcidHint = notFound.some((r) => PMCID_SHAPED_RE.test(r.epmcId))
             ? ' An id shaped like a PMCID also resolves through pubmed_fetch_fulltext, whose `pmcids` input takes it on its own.'
             : '';
-        if (records.length === 0) {
-            ctx.enrich.notice(`Europe PMC returned no record for any requested pair. Both fields must be copied verbatim from a pubmed_europepmc_search hit — \`epmcId\` is Europe PMC's own id (the PMID only for \`source: "MED"\`), and it must be paired with the same hit's \`source\`.${pmcidHint}`);
+        // Only the last ctx.enrich.notice survives, so the applicable guidance is
+        // collected and emitted once. The empty-batch case keys on what resolved,
+        // not on what the budget kept: a batch emptied by a small ceiling is a
+        // budget outcome, not a batch of unknown pairs.
+        const notices = [];
+        if (resolvedRecords.length === 0) {
+            notices.push(`Europe PMC returned no record for any requested pair. Both fields must be copied verbatim from a pubmed_europepmc_search hit — \`epmcId\` is Europe PMC's own id (the PMID only for \`source: "MED"\`), and it must be paired with the same hit's \`source\`.${pmcidHint}`);
         }
         else if (notFound.length > 0) {
-            ctx.enrich.notice(`Europe PMC returned no record for ${notFound.length} of ${input.records.length} requested pairs: ${notFound
-                .map((r) => `${r.source}/${r.epmcId}`)
+            notices.push(`Europe PMC returned no record for ${notFound.length} of ${input.records.length} requested pairs: ${notFound
+                .map(formatPair)
                 .join(', ')}. Verify each against its pubmed_europepmc_search hit — a mismatched \`source\` is the usual cause.${pmcidHint}`);
         }
+        if (deferred) {
+            ctx.enrich({ truncated: true });
+            notices.push(buildDeferralNotice(deferred));
+        }
+        if (notices.length > 0)
+            ctx.enrich.notice(notices.join(' '));
         return {
             records,
             ...(notFound.length > 0 && { notFound }),
+            ...(deferred && { deferred }),
         };
     },
     format: (result) => {
         const lines = ['## Europe PMC Records', `**Returned:** ${result.records.length}`];
         if (result.notFound?.length) {
-            lines.push(`**Not found:** ${result.notFound.map((r) => `${r.source}/${r.epmcId}`).join(', ')}`);
+            lines.push(`**Not found:** ${result.notFound.map(formatPair).join(', ')}`);
+        }
+        if (result.deferred) {
+            const d = result.deferred;
+            lines.push(`**Deferred by the response budget:** ${d.deferredCount} record(s) — ${d.returnedCharacters} of ${d.maxResponseCharacters} budgeted characters returned; next deferred record ${d.nextDeferredCharacters} characters`, `Re-call \`pubmed_europepmc_fetch\` with these as \`records\` (\`source\`/\`epmcId\`): ${d.records.map(formatPair).join(', ')}`);
         }
         for (const r of result.records) {
             // Escaping is render-time only — the structuredContent values above stay
@@ -230,4 +298,20 @@ export const pubmedEuropepmcFetchTool = tool('pubmed_europepmc_fetch', {
         return [{ type: 'text', text: lines.join('\n') }];
     },
 });
+/** A record address as the notices and `content[]` render it: `SOURCE/epmcId`. */
+function formatPair(pair) {
+    return `${pair.source}/${pair.epmcId}`;
+}
+/**
+ * Compose the recovery notice for a response the whole-response budget bounded.
+ * Names what was spent, which pairs are still retrievable, and the ceiling the
+ * next call has to clear — so a caller reading only `content[]` can resume
+ * without inspecting `deferred`. (#188)
+ */
+function buildDeferralNotice(deferred) {
+    const spent = deferred.returnedCharacters === 0
+        ? `The first record alone exceeds the requested maxResponseCharacters of ${deferred.maxResponseCharacters}, so none were returned.`
+        : `Response character budget reached: ${deferred.returnedCharacters} of ${deferred.maxResponseCharacters} characters returned.`;
+    return `${spent} ${deferred.deferredCount} resolved record(s) were deferred whole: ${deferred.records.map(formatPair).join(', ')}. Re-call pubmed_europepmc_fetch with those pairs as \`records\` to retrieve them, or raise maxResponseCharacters to at least ${deferred.nextDeferredCharacters} — the size of the next deferred record.`;
+}
 //# sourceMappingURL=pubmed-europepmc-fetch.tool.js.map

package/dist/mcp-server/tools/definitions/pubmed-europepmc-fetch.tool.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/mcp-server/tools/definitions/pubmed-europepmc-search.tool.d.ts CHANGED Viewed

@@ -3,10 +3,13 @@
  * can't reach: preprints (source `PPR`), Agricola (`AGR`), patents (`PAT`),
  * and EPMC-only OA articles. Uses EPMC's cursor-based pagination
  * (`cursorMark`) — unlike `pubmed_search_articles`'s offset-based paging,
- * because EPMC's search API doesn't support offset. `max_results` and `limit`
- * are accepted as aliases for `pageSize`. The total hit count rides in
- * `output` so `format()` can state it in the header, and `searchUrl` opens the
- * source-filtered query Europe PMC actually ran.
+ * because EPMC's search API doesn't support offset. `max_results`, `limit`, and
+ * `maxResults` are accepted as aliases for `pageSize`. A `query` with no search
+ * term (`()`, `<b></b>`) or a blank `cursorMark` is rejected before Europe PMC
+ * is called.
+ * The total hit count rides in `output` so `format()` can state it in the
+ * header, and `searchUrl` opens the source-filtered query Europe PMC actually
+ * ran.
  *
  * Only registered when `EUROPEPMC_ENABLED=true` (the default). The handler
  * fails fast with a configuration error if the service is unset, since the
@@ -78,10 +81,22 @@ export declare const pubmedEuropepmcSearchTool: import("@cyanheads/mcp-ts-core")
 }, {
     readonly reason: 'europepmc_invalid_input';
     readonly code: JsonRpcErrorCode.ValidationError;
-    readonly when: 'Europe PMC rejected the request input — an error message such as an empty query, an empty response to a sort with an undocumented field or no asc/desc direction, or an empty response to a pagination cursor on every attempt.';
-    readonly recovery: 'Adjust the input — the query, the sort, or the cursorMark — before retrying; the same input will be rejected again.';
+    readonly when: 'Europe PMC rejected the request input — an error message in place of results, an empty response to a sort with an undocumented field or no asc/desc direction, or a pagination cursor it cannot read (an empty response on the last attempt the retry budget allows, or a second HTTP 503 when the first page of the same query is served).';
+    readonly recovery: "Fix the rejected input before retrying — the query, the sort, or the cursorMark (pass the previous response's `nextCursorMark` verbatim, or `*` to restart); the same input will most likely be rejected again.";
     readonly retryable: false;
     readonly thrownBy: 'service';
+}, {
+    readonly reason: 'blank_query';
+    readonly code: JsonRpcErrorCode.ValidationError;
+    readonly when: 'The query contains no search term: nothing is left once whitespace and invisible characters such as a zero-width space are disregarded. pubmed_search_articles and pubmed_europepmc_search first decode HTML entities and also disregard markup and parentheses, so `()`, `<b></b>`, and `&nbsp;` hold no term there; pubmed_search_articles also disregards bracketed field tags such as `[pdat]`.';
+    readonly recovery: 'Supply a nonblank search term; retrying the same blank input will not help.';
+    readonly retryable: false;
+}, {
+    readonly reason: 'blank_cursor';
+    readonly code: JsonRpcErrorCode.ValidationError;
+    readonly when: 'The `cursorMark` holds only whitespace or invisible characters such as a zero-width space. Europe PMC cannot read it and answers with the HTTP 503 it also uses for an outage.';
+    readonly recovery: "Omit `cursorMark` or pass `*` for the first page, or pass the previous response's `nextCursorMark` verbatim for the next page.";
+    readonly retryable: false;
 }, {
     readonly reason: 'europepmc_disabled';
     readonly code: JsonRpcErrorCode.ConfigurationError;

package/dist/mcp-server/tools/definitions/pubmed-europepmc-search.tool.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"pubmed-europepmc-search.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/pubmed-europepmc-search.tool.ts"],"names":[],"mappings":"AAAA~~;;;;;;;;;;;;;;;GAeG~~;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;~~AA8BjE~~,eAAO,MAAM,yBAAyB~~;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;qBAWxB~~,oBAAoB;;mBAEtB,6DAA6D;uBACzD,mFAAmF;;;;;;;;;;;~~EAwSjG~~,CAAC"}
1	+ {"version":3,"file":"pubmed-europepmc-search.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/pubmed-europepmc-search.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;GAkBG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAgCjE,eAAO,MAAM,yBAAyB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;qBAYxB,cAAc;;mBAEhB,gLAAgL;uBAEpL,gIAAgI;;;qBAI1H,oBAAoB;;mBAEtB,6DAA6D;uBACzD,mFAAmF;;;;;;;;;;;EAgUjG,CAAC"}

package/dist/mcp-server/tools/definitions/pubmed-europepmc-search.tool.js CHANGED Viewed

@@ -3,10 +3,13 @@
  * can't reach: preprints (source `PPR`), Agricola (`AGR`), patents (`PAT`),
  * and EPMC-only OA articles. Uses EPMC's cursor-based pagination
  * (`cursorMark`) — unlike `pubmed_search_articles`'s offset-based paging,
- * because EPMC's search API doesn't support offset. `max_results` and `limit`
- * are accepted as aliases for `pageSize`. The total hit count rides in
- * `output` so `format()` can state it in the header, and `searchUrl` opens the
- * source-filtered query Europe PMC actually ran.
+ * because EPMC's search API doesn't support offset. `max_results`, `limit`, and
+ * `maxResults` are accepted as aliases for `pageSize`. A `query` with no search
+ * term (`()`, `<b></b>`) or a blank `cursorMark` is rejected before Europe PMC
+ * is called.
+ * The total hit count rides in `output` so `format()` can state it in the
+ * header, and `searchUrl` opens the source-filtered query Europe PMC actually
+ * ran.
  *
  * Only registered when `EUROPEPMC_ENABLED=true` (the default). The handler
  * fails fast with a configuration error if the service is unset, since the
@@ -16,12 +19,14 @@
  */
 import { tool, z } from '@cyanheads/mcp-ts-core';
 import { JsonRpcErrorCode } from '@cyanheads/mcp-ts-core/errors';
-import { EUROPEPMC_SERVICE_ERRORS } from '../../../services/error-contracts.js';
+import { sanitization } from '@cyanheads/mcp-ts-core/utils';
+import { EUROPEPMC_SERVICE_ERRORS, QUERY_INPUT_ERRORS } from '../../../services/error-contracts.js';
 import { getEuropePmcService } from '../../../services/europe-pmc/europe-pmc-service.js';
 import { EUROPEPMC_ALL_SOURCES, EUROPEPMC_DEFAULT_SOURCES, } from '../../../services/europe-pmc/types.js';
 import { toDisplayText } from '../../../services/ncbi/parsing/text-helpers.js';
 import { conceptMeta, EDAM_DATABASE_SEARCH, EDAM_PUBMED_ID, SCHEMA_SEARCH_ACTION, } from './_concepts.js';
 import { escapeMarkdownInline, sliceCodeUnits } from './_text.js';
+import { hasVisibleText } from './_visible-text.js';
 const SourceEnum = z.enum(['MED', 'PMC', 'PPR', 'PAT', 'AGR']);
 /**
  * Character budget for `abstractSnippet`. Keeps a search page bounded no matter
@@ -39,6 +44,14 @@ export const pubmedEuropepmcSearchTool = tool('pubmed_europepmc_search', {
     sourceUrl: 'https://github.com/cyanheads/pubmed-mcp-server/blob/main/src/mcp-server/tools/definitions/pubmed-europepmc-search.tool.ts',
     errors: [
         ...EUROPEPMC_SERVICE_ERRORS,
+        ...QUERY_INPUT_ERRORS,
+        {
+            reason: 'blank_cursor',
+            code: JsonRpcErrorCode.ValidationError,
+            when: 'The `cursorMark` holds only whitespace or invisible characters such as a zero-width space. Europe PMC cannot read it and answers with the HTTP 503 it also uses for an outage.',
+            recovery: "Omit `cursorMark` or pass `*` for the first page, or pass the previous response's `nextCursorMark` verbatim for the next page.",
+            retryable: false,
+        },
         {
             reason: 'europepmc_disabled',
             code: JsonRpcErrorCode.ConfigurationError,
@@ -47,13 +60,14 @@ export const pubmedEuropepmcSearchTool = tool('pubmed_europepmc_search', {
         },
     ],
     // Never advertised; rewritten to the canonical key before the schema parses.
-    // `pageSize` is this tool's only count parameter, so both map to it. (#156)
-    inputAliases: { max_results: 'pageSize', limit: 'pageSize' },
+    // `pageSize` is this tool's only count parameter, so every sibling tool's count
+    // name maps to it. (#156, #190)
+    inputAliases: { max_results: 'pageSize', limit: 'pageSize', maxResults: 'pageSize' },
     input: z.object({
         query: z
             .string()
             .min(1)
-            .describe('Europe PMC search query. Supports field tokens like `AUTH:"<name>"`, `JOURNAL:"<title>"`, `TITLE:"<words>"`, `PUB_YEAR:[2020 TO 2024]`, `DOI:"..."`, `EXT_ID:<pmid> AND SRC:MED`, `PMCID:PMC<digits>`. Identifier tokens may be quoted or unquoted — this tool wraps every query with its `sources` filter, and Europe PMC honors a quoted identifier inside that wrapper. A PubMed-indexed article resolves under `SRC:MED`, not `SRC:PMC`, whichever identifier is used. Free text is matched broadly across abstract/title/keywords.'),
+            .describe('Europe PMC search query. Supports field tokens like `AUTH:"<name>"`, `JOURNAL:"<title>"`, `TITLE:"<words>"`, `PUB_YEAR:[2020 TO 2024]`, `DOI:"..."`, `EXT_ID:<pmid> AND SRC:MED`, `PMCID:PMC<digits>`. Identifier tokens may be quoted or unquoted — this tool wraps every query with its `sources` filter, and Europe PMC honors a quoted identifier inside that wrapper. A PubMed-indexed article resolves under `SRC:MED`, not `SRC:PMC`, whichever identifier is used. Free text is matched broadly across abstract/title/keywords. A query with no search term — blank once HTML entities are decoded and markup, parentheses, and invisible characters are disregarded, such as `()` or `<b></b>` — is rejected; any other query is sent as written.'),
         pageSize: z
             .number()
             .int()
@@ -64,7 +78,7 @@ export const pubmedEuropepmcSearchTool = tool('pubmed_europepmc_search', {
         cursorMark: z
             .string()
             .default('*')
-            .describe("Pagination cursor. Use `*` (default) for the first page; pass the previous response's `nextCursorMark` for subsequent pages."),
+            .describe("Pagination cursor. Use `*` (default) for the first page; pass the previous response's `nextCursorMark` verbatim for subsequent pages. A whitespace-only cursor, invisible characters included, is rejected before the request, and a cursor Europe PMC cannot read fails with `europepmc_invalid_input` once a retry of it fails again while the first page of the same query is served."),
         sources: z
             .array(SourceEnum)
             .min(1)
@@ -164,9 +178,27 @@ export const pubmedEuropepmcSearchTool = tool('pubmed_europepmc_search', {
     },
     async handler(input, ctx) {
         ctx.log.info('Executing pubmed_europepmc_search', { query: input.query });
+        // `min(1)` counts whitespace, and the source wrapper trims a blank query to
+        // `() AND (SRC:"MED")`, which Europe PMC answers with every record of that
+        // source. The check runs on the caller's query, before the wrapper, and
+        // applies pubmed_search_articles' rule: markup stripped, entities decoded,
+        // parentheses and invisible characters disregarded. Europe PMC would search
+        // `<b></b>` as the word `b`, but that is no term the caller wrote. The
+        // sanitized copy only decides blankness; the query is sent as written. (#176)
+        const checkedQuery = await sanitization.sanitizeString(input.query, { context: 'text' });
+        if (!hasVisibleText(checkedQuery.replace(/[()]/g, ''))) {
+            throw ctx.fail('blank_query', 'The `query` contains no search term — it is blank once HTML entities are decoded and markup, parentheses, and invisible characters are disregarded.');
+        }
+        // Europe PMC answers a blank cursor — whitespace or invisible characters —
+        // with the HTTP 503 it uses for an outage, which would be retried as one.
+        // An exactly-empty cursor reads as the first page upstream and passes
+        // through. (#180)
+        if (input.cursorMark !== '' && !hasVisibleText(input.cursorMark)) {
+            throw ctx.fail('blank_cursor', 'The `cursorMark` holds only whitespace or invisible characters, which Europe PMC cannot read as a page position.');
+        }
         const epmc = getEuropePmcService();
         if (!epmc) {
-            throw ctx.fail('europepmc_disabled', 'Europe PMC service is not available. Set EUROPEPMC_ENABLED=true to use this tool.', { ...ctx.recoveryFor('europepmc_disabled') });
+            throw ctx.fail('europepmc_disabled', 'Europe PMC service is not available. Set EUROPEPMC_ENABLED=true to use this tool.');
         }
         const sources = (input.sources ?? EUROPEPMC_DEFAULT_SOURCES);
         const result = await epmc.search({

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	@@ -1 +1 @@
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