@cyanheads/pubmed-mcp-server 2.10.13 → 2.10.15

package/dist/mcp-server/tools/definitions/find-related.tool.d.ts

@@ -37,66 +37,6 @@ export declare const findRelatedTool: import("@cyanheads/mcp-ts-core").ToolDefin
         pubDate: z.ZodOptional<z.ZodString>;
     }, z.core.$strip>>;
 }, z.core.$strip>, readonly [{
-    readonly reason: 'queue_full';
-    readonly code: JsonRpcErrorCode.RateLimited;
-    readonly when: 'Local NCBI request queue is at capacity.';
-    readonly recovery: 'Retry after 1-2 seconds; the request queue hit the NCBI rate limit.';
-    readonly retryable: true;
-}, {
-    readonly reason: 'ncbi_unreachable';
-    readonly code: JsonRpcErrorCode.ServiceUnavailable;
-    readonly when: 'NCBI E-utilities is unreachable after all retry attempts.';
-    readonly recovery: 'Retry after a brief delay; NCBI was unreachable across all retry attempts.';
-    readonly retryable: true;
-}, {
-    readonly reason: 'ncbi_deadline_exceeded';
-    readonly code: JsonRpcErrorCode.Timeout;
-    readonly when: 'Total request deadline expired before NCBI returned a response.';
-    readonly recovery: 'Reduce batch size or retry; NCBI may be under temporary load.';
-    readonly retryable: true;
-}, {
-    readonly reason: 'ncbi_invalid_response';
-    readonly code: JsonRpcErrorCode.SerializationError;
-    readonly when: 'NCBI returned a body that could not be parsed (invalid XML/JSON).';
-    readonly recovery: 'Retry the request; NCBI returned a malformed response that could not be parsed.';
-    readonly retryable: true;
-}, {
-    readonly reason: 'ncbi_resource_not_found';
-    readonly code: JsonRpcErrorCode.NotFound;
-    readonly when: 'NCBI returned a structured "not found" error for the requested ID(s).';
-    readonly recovery: 'Verify the ID exists in PubMed; the resource was not found in NCBI and retrying will not help.';
-    readonly retryable: false;
-}, {
-    readonly reason: 'europepmc_unreachable';
-    readonly code: JsonRpcErrorCode.ServiceUnavailable;
-    readonly when: 'Europe PMC was unreachable after all retry attempts.';
-    readonly recovery: 'Retry after a brief delay; Europe PMC was unreachable. NCBI PMC and Unpaywall remain available.';
-    readonly retryable: true;
-}, {
-    readonly reason: 'europepmc_invalid_response';
-    readonly code: JsonRpcErrorCode.SerializationError;
-    readonly when: 'Europe PMC returned a body that could not be parsed (invalid JSON or XML).';
-    readonly recovery: 'Retry the request; Europe PMC returned a malformed response that could not be parsed.';
-    readonly retryable: true;
-}, {
-    readonly reason: 'europepmc_invalid_input';
-    readonly code: JsonRpcErrorCode.ValidationError;
-    readonly when: 'Europe PMC rejected the request input (empty query, unknown sort field, malformed parameter).';
-    readonly recovery: 'Adjust the input — usually the query or sort field — before retrying; the same input will be rejected again.';
-    readonly retryable: false;
-}, {
-    readonly reason: 'openalex_unreachable';
-    readonly code: JsonRpcErrorCode.ServiceUnavailable;
-    readonly when: 'OpenAlex was unreachable after all retry attempts.';
-    readonly recovery: 'Retry after a brief delay; OpenAlex was unreachable. NCBI and Europe PMC remain available.';
-    readonly retryable: true;
-}, {
-    readonly reason: 'openalex_invalid_response';
-    readonly code: JsonRpcErrorCode.SerializationError;
-    readonly when: 'OpenAlex returned a body that could not be parsed (invalid JSON).';
-    readonly recovery: 'Retry the request; OpenAlex returned a malformed response that could not be parsed.';
-    readonly retryable: true;
-}, {
     readonly reason: 'all_providers_failed';
     readonly code: JsonRpcErrorCode.ServiceUnavailable;
     readonly when: 'Every provider eligible for the requested relationship failed; none answered.';

package/dist/mcp-server/tools/definitions/find-related.tool.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"find-related.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/find-related.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAsB,gBAAgB,EAAY,MAAM,+BAA+B,CAAC;AAgV/F,eAAO,MAAM,eAAe;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;qBAad,sBAAsB;;mBAExB,+EAA+E;uBAEnF,qMAAqM;;;;;;;;;;;;;;;;;;EA6f3M,CAAC"}
+{"version":3,"file":"find-related.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/find-related.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAsB,gBAAgB,EAAY,MAAM,+BAA+B,CAAC;AA4U/F,eAAO,MAAM,eAAe;;;;;;;;;;;;;;;;;;;;;;;;;;;;;qBAad,sBAAsB;;mBAExB,+EAA+E;uBAEnF,qMAAqM;;;;;;;;;;;;;;;;;;EA6f3M,CAAC"}

package/dist/mcp-server/tools/definitions/find-related.tool.js

@@ -8,7 +8,7 @@
  */
 import { tool, z } from '@cyanheads/mcp-ts-core';
 import { configurationError, JsonRpcErrorCode, McpError } from '@cyanheads/mcp-ts-core/errors';
-import { EUROPEPMC_SERVICE_ERRORS, NCBI_SERVICE_ERRORS, OPENALEX_SERVICE_ERRORS, } from '../../../services/error-contracts.js';
+import { EUROPEPMC_SERVICE_ERRORS, OPENALEX_SERVICE_ERRORS } from '../../../services/error-contracts.js';
 import { getEuropePmcService } from '../../../services/europe-pmc/europe-pmc-service.js';
 import { getNcbiService } from '../../../services/ncbi/ncbi-service.js';
 import { extractBriefSummaries } from '../../../services/ncbi/parsing/esummary-parser.js';
@@ -233,10 +233,10 @@ export const findRelatedTool = tool('pubmed_find_related', {
     annotations: { readOnlyHint: true, openWorldHint: true },
     _meta: conceptMeta([SCHEMA_SCHOLARLY_ARTICLE, EDAM_DATA_RETRIEVAL]),
     sourceUrl: 'https://github.com/cyanheads/pubmed-mcp-server/blob/main/src/mcp-server/tools/definitions/find-related.tool.ts',
+    // The handler catches every provider and ESummary failure, so no service
+    // reason reaches the caller as the top-level `data.reason`; each surfaces
+    // nested in `data.attempted` or the `coverageFailures` enrichment instead.
     errors: [
-        ...NCBI_SERVICE_ERRORS,
-        ...EUROPEPMC_SERVICE_ERRORS,
-        ...OPENALEX_SERVICE_ERRORS,
         {
             reason: 'all_providers_failed',
             code: JsonRpcErrorCode.ServiceUnavailable,

package/dist/mcp-server/tools/definitions/find-related.tool.js.map

@@ -1 +1 @@
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package/dist/mcp-server/tools/definitions/format-citations.tool.d.ts

@@ -31,33 +31,38 @@ export declare const formatCitationsTool: import("@cyanheads/mcp-ts-core").ToolD
 }, z.core.$strip>, readonly [{
     readonly reason: 'queue_full';
     readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.RateLimited;
-    readonly when: 'Local NCBI request queue is at capacity.';
-    readonly recovery: 'Retry after 1-2 seconds; the request queue hit the NCBI rate limit.';
+    readonly when: 'The local NCBI request queue shed the call — the queue is full, or the call cannot start before its total deadline (for example behind the cooldown that follows an NCBI 429).';
+    readonly recovery: 'Wait the number of seconds in `retryAfter`, then retry; the NCBI request queue is saturated or cooling down after a rate limit.';
     readonly retryable: true;
+    readonly thrownBy: 'service';
 }, {
     readonly reason: 'ncbi_unreachable';
     readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.ServiceUnavailable;
     readonly when: 'NCBI E-utilities is unreachable after all retry attempts.';
     readonly recovery: 'Retry after a brief delay; NCBI was unreachable across all retry attempts.';
     readonly retryable: true;
+    readonly thrownBy: 'service';
 }, {
     readonly reason: 'ncbi_deadline_exceeded';
     readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.Timeout;
     readonly when: 'Total request deadline expired before NCBI returned a response.';
     readonly recovery: 'Reduce batch size or retry; NCBI may be under temporary load.';
     readonly retryable: true;
+    readonly thrownBy: 'service';
 }, {
     readonly reason: 'ncbi_invalid_response';
     readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.SerializationError;
     readonly when: 'NCBI returned a body that could not be parsed (invalid XML/JSON).';
     readonly recovery: 'Retry the request; NCBI returned a malformed response that could not be parsed.';
     readonly retryable: true;
+    readonly thrownBy: 'service';
 }, {
     readonly reason: 'ncbi_resource_not_found';
     readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.NotFound;
     readonly when: 'NCBI returned a structured "not found" error for the requested ID(s).';
     readonly recovery: 'Verify the ID exists in PubMed; the resource was not found in NCBI and retrying will not help.';
     readonly retryable: false;
+    readonly thrownBy: 'service';
 }], {
     readonly notice: z.ZodOptional<z.ZodString>;
 }>;

package/dist/mcp-server/tools/definitions/format-citations.tool.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"format-citations.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/format-citations.tool.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAwBjD,eAAO,MAAM,mBAAmB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EA2H9B,CAAC"}
+{"version":3,"file":"format-citations.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/format-citations.tool.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAwBjD,eAAO,MAAM,mBAAmB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EA2H9B,CAAC"}

package/dist/mcp-server/tools/definitions/lookup-citation.tool.d.ts

@@ -42,32 +42,37 @@ export declare const lookupCitationTool: import("@cyanheads/mcp-ts-core").ToolDe
 }, z.core.$strip>, readonly [{
     readonly reason: 'queue_full';
     readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.RateLimited;
-    readonly when: 'Local NCBI request queue is at capacity.';
-    readonly recovery: 'Retry after 1-2 seconds; the request queue hit the NCBI rate limit.';
+    readonly when: 'The local NCBI request queue shed the call — the queue is full, or the call cannot start before its total deadline (for example behind the cooldown that follows an NCBI 429).';
+    readonly recovery: 'Wait the number of seconds in `retryAfter`, then retry; the NCBI request queue is saturated or cooling down after a rate limit.';
     readonly retryable: true;
+    readonly thrownBy: 'service';
 }, {
     readonly reason: 'ncbi_unreachable';
     readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.ServiceUnavailable;
     readonly when: 'NCBI E-utilities is unreachable after all retry attempts.';
     readonly recovery: 'Retry after a brief delay; NCBI was unreachable across all retry attempts.';
     readonly retryable: true;
+    readonly thrownBy: 'service';
 }, {
     readonly reason: 'ncbi_deadline_exceeded';
     readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.Timeout;
     readonly when: 'Total request deadline expired before NCBI returned a response.';
     readonly recovery: 'Reduce batch size or retry; NCBI may be under temporary load.';
     readonly retryable: true;
+    readonly thrownBy: 'service';
 }, {
     readonly reason: 'ncbi_invalid_response';
     readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.SerializationError;
     readonly when: 'NCBI returned a body that could not be parsed (invalid XML/JSON).';
     readonly recovery: 'Retry the request; NCBI returned a malformed response that could not be parsed.';
     readonly retryable: true;
+    readonly thrownBy: 'service';
 }, {
     readonly reason: 'ncbi_resource_not_found';
     readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.NotFound;
     readonly when: 'NCBI returned a structured "not found" error for the requested ID(s).';
     readonly recovery: 'Verify the ID exists in PubMed; the resource was not found in NCBI and retrying will not help.';
     readonly retryable: false;
+    readonly thrownBy: 'service';
 }], undefined>;
 //# sourceMappingURL=lookup-citation.tool.d.ts.map

package/dist/mcp-server/tools/definitions/lookup-citation.tool.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"lookup-citation.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/lookup-citation.tool.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAiCjD,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;cAmT7B,CAAC"}
+{"version":3,"file":"lookup-citation.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/lookup-citation.tool.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAiCjD,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;cAmT7B,CAAC"}

package/dist/mcp-server/tools/definitions/lookup-mesh.tool.d.ts

@@ -25,33 +25,38 @@ export declare const lookupMeshTool: import("@cyanheads/mcp-ts-core").ToolDefini
 }, z.core.$strip>, readonly [{
     readonly reason: 'queue_full';
     readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.RateLimited;
-    readonly when: 'Local NCBI request queue is at capacity.';
-    readonly recovery: 'Retry after 1-2 seconds; the request queue hit the NCBI rate limit.';
+    readonly when: 'The local NCBI request queue shed the call — the queue is full, or the call cannot start before its total deadline (for example behind the cooldown that follows an NCBI 429).';
+    readonly recovery: 'Wait the number of seconds in `retryAfter`, then retry; the NCBI request queue is saturated or cooling down after a rate limit.';
     readonly retryable: true;
+    readonly thrownBy: 'service';
 }, {
     readonly reason: 'ncbi_unreachable';
     readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.ServiceUnavailable;
     readonly when: 'NCBI E-utilities is unreachable after all retry attempts.';
     readonly recovery: 'Retry after a brief delay; NCBI was unreachable across all retry attempts.';
     readonly retryable: true;
+    readonly thrownBy: 'service';
 }, {
     readonly reason: 'ncbi_deadline_exceeded';
     readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.Timeout;
     readonly when: 'Total request deadline expired before NCBI returned a response.';
     readonly recovery: 'Reduce batch size or retry; NCBI may be under temporary load.';
     readonly retryable: true;
+    readonly thrownBy: 'service';
 }, {
     readonly reason: 'ncbi_invalid_response';
     readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.SerializationError;
     readonly when: 'NCBI returned a body that could not be parsed (invalid XML/JSON).';
     readonly recovery: 'Retry the request; NCBI returned a malformed response that could not be parsed.';
     readonly retryable: true;
+    readonly thrownBy: 'service';
 }, {
     readonly reason: 'ncbi_resource_not_found';
     readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.NotFound;
     readonly when: 'NCBI returned a structured "not found" error for the requested ID(s).';
     readonly recovery: 'Verify the ID exists in PubMed; the resource was not found in NCBI and retrying will not help.';
     readonly retryable: false;
+    readonly thrownBy: 'service';
 }, {
     readonly reason: 'blank_query';
     readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.ValidationError;

package/dist/mcp-server/tools/definitions/lookup-mesh.tool.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"lookup-mesh.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/lookup-mesh.tool.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AA6GjD,eAAO,MAAM,cAAc;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EAsMzB,CAAC"}
+{"version":3,"file":"lookup-mesh.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/lookup-mesh.tool.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AA6GjD,eAAO,MAAM,cAAc;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EAsMzB,CAAC"}

package/dist/mcp-server/tools/definitions/pubmed-europepmc-fetch.tool.d.ts

@@ -61,21 +61,24 @@ export declare const pubmedEuropepmcFetchTool: import("@cyanheads/mcp-ts-core").
 }, z.core.$strip>, readonly [{
     readonly reason: 'europepmc_unreachable';
     readonly code: JsonRpcErrorCode.ServiceUnavailable;
-    readonly when: 'Europe PMC was unreachable after all retry attempts.';
+    readonly when: 'Europe PMC failed on every retry attempt — unreachable, an HTTP 404 or 5xx other than a 504 timeout from its search endpoint, or an empty response with no results.';
     readonly recovery: 'Retry after a brief delay; Europe PMC was unreachable. NCBI PMC and Unpaywall remain available.';
     readonly retryable: true;
+    readonly thrownBy: 'service';
 }, {
     readonly reason: 'europepmc_invalid_response';
     readonly code: JsonRpcErrorCode.SerializationError;
     readonly when: 'Europe PMC returned a body that could not be parsed (invalid JSON or XML).';
     readonly recovery: 'Retry the request; Europe PMC returned a malformed response that could not be parsed.';
     readonly retryable: true;
+    readonly thrownBy: 'service';
 }, {
     readonly reason: 'europepmc_invalid_input';
     readonly code: JsonRpcErrorCode.ValidationError;
-    readonly when: 'Europe PMC rejected the request input (empty query, unknown sort field, malformed parameter).';
-    readonly recovery: 'Adjust the input — usually the query or sort field — before retrying; the same input will be rejected again.';
+    readonly when: 'Europe PMC rejected the request input — an error message such as an empty query, an empty response to a sort with an undocumented field or no asc/desc direction, or an empty response to a pagination cursor on every attempt.';
+    readonly recovery: 'Adjust the input — the query, the sort, or the cursorMark — before retrying; the same input will be rejected again.';
     readonly retryable: false;
+    readonly thrownBy: 'service';
 }, {
     readonly reason: 'europepmc_disabled';
     readonly code: JsonRpcErrorCode.ConfigurationError;

package/dist/mcp-server/tools/definitions/pubmed-europepmc-fetch.tool.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"pubmed-europepmc-fetch.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/pubmed-europepmc-fetch.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;GAYG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAkGjE,eAAO,MAAM,wBAAwB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;qBAWvB,oBAAoB;;mBAEtB,6DAA6D;uBACzD,mFAAmF;;;EA+JjG,CAAC"}
+{"version":3,"file":"pubmed-europepmc-fetch.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/pubmed-europepmc-fetch.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;GAYG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAkGjE,eAAO,MAAM,wBAAwB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;qBAWvB,oBAAoB;;mBAEtB,6DAA6D;uBACzD,mFAAmF;;;EA+JjG,CAAC"}

package/dist/mcp-server/tools/definitions/pubmed-europepmc-search.tool.d.ts

@@ -60,21 +60,24 @@ export declare const pubmedEuropepmcSearchTool: import("@cyanheads/mcp-ts-core")
 }, z.core.$strip>, readonly [{
     readonly reason: 'europepmc_unreachable';
     readonly code: JsonRpcErrorCode.ServiceUnavailable;
-    readonly when: 'Europe PMC was unreachable after all retry attempts.';
+    readonly when: 'Europe PMC failed on every retry attempt — unreachable, an HTTP 404 or 5xx other than a 504 timeout from its search endpoint, or an empty response with no results.';
     readonly recovery: 'Retry after a brief delay; Europe PMC was unreachable. NCBI PMC and Unpaywall remain available.';
     readonly retryable: true;
+    readonly thrownBy: 'service';
 }, {
     readonly reason: 'europepmc_invalid_response';
     readonly code: JsonRpcErrorCode.SerializationError;
     readonly when: 'Europe PMC returned a body that could not be parsed (invalid JSON or XML).';
     readonly recovery: 'Retry the request; Europe PMC returned a malformed response that could not be parsed.';
     readonly retryable: true;
+    readonly thrownBy: 'service';
 }, {
     readonly reason: 'europepmc_invalid_input';
     readonly code: JsonRpcErrorCode.ValidationError;
-    readonly when: 'Europe PMC rejected the request input (empty query, unknown sort field, malformed parameter).';
-    readonly recovery: 'Adjust the input — usually the query or sort field — before retrying; the same input will be rejected again.';
+    readonly when: 'Europe PMC rejected the request input — an error message such as an empty query, an empty response to a sort with an undocumented field or no asc/desc direction, or an empty response to a pagination cursor on every attempt.';
+    readonly recovery: 'Adjust the input — the query, the sort, or the cursorMark — before retrying; the same input will be rejected again.';
     readonly retryable: false;
+    readonly thrownBy: 'service';
 }, {
     readonly reason: 'europepmc_disabled';
     readonly code: JsonRpcErrorCode.ConfigurationError;

package/dist/mcp-server/tools/definitions/pubmed-europepmc-search.tool.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"pubmed-europepmc-search.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/pubmed-europepmc-search.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;GAYG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AA8BjE,eAAO,MAAM,yBAAyB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;qBAWxB,oBAAoB;;mBAEtB,6DAA6D;uBACzD,mFAAmF;;;;;;;;;;;;EAiSjG,CAAC"}
+{"version":3,"file":"pubmed-europepmc-search.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/pubmed-europepmc-search.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;GAYG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AA8BjE,eAAO,MAAM,yBAAyB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;qBAWxB,oBAAoB;;mBAEtB,6DAA6D;uBACzD,mFAAmF;;;;;;;;;;;;EAiSjG,CAAC"}

package/dist/mcp-server/tools/definitions/pubmed-europepmc-search.tool.js

@@ -71,7 +71,7 @@ export const pubmedEuropepmcSearchTool = tool('pubmed_europepmc_search', {
         sort: z
             .string()
             .optional()
-            .describe('Optional EPMC sort: `<field> asc|desc`. Documented sortable fields: `P_PDATE_D` (publication date), `CITED` (citation count), `AUTH_FIRST` (first author surname), `PUB_YEAR` (publication year). Examples: `P_PDATE_D desc` (newest first), `CITED desc` (most cited). Omit for relevance ranking. Fields outside the documented set are rejected by EPMC. Note: `P_PDATE_D` is ignored for preprint-only (`sources: ["PPR"]`) result sets — preprints have no populated publication date, so use `PUB_YEAR` to order preprints by date.'),
+            .describe('Optional EPMC sort: `<field> asc|desc`, or several comma-separated keys applied in order (`PUB_YEAR desc, CITED desc`). Documented sortable fields: `P_PDATE_D` (publication date), `CITED` (citation count), `AUTH_FIRST` (first author surname), `PUB_YEAR` (publication year). Examples: `P_PDATE_D desc` (newest first), `CITED desc` (most cited). Omit for relevance ranking. Field and direction match case-insensitively. A field outside the documented set may be honored, silently ignored, or rejected, and a sort using one — or a key without `asc`/`desc` — can fail with `europepmc_invalid_input` naming it, even when Europe PMC honors the field. Note: `P_PDATE_D` is ignored for preprint-only (`sources: ["PPR"]`) result sets — preprints have no populated publication date, so use `PUB_YEAR` to order preprints by date.'),
     }),
     output: z.object({
         hits: z

package/dist/mcp-server/tools/definitions/pubmed-europepmc-search.tool.js.map

@@ -1 +1 @@
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package/dist/mcp-server/tools/definitions/search-articles.tool.d.ts

@@ -58,33 +58,38 @@ export declare const searchArticlesTool: import("@cyanheads/mcp-ts-core").ToolDe
 }, z.core.$strip>, readonly [{
     readonly reason: 'queue_full';
     readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.RateLimited;
-    readonly when: 'Local NCBI request queue is at capacity.';
-    readonly recovery: 'Retry after 1-2 seconds; the request queue hit the NCBI rate limit.';
+    readonly when: 'The local NCBI request queue shed the call — the queue is full, or the call cannot start before its total deadline (for example behind the cooldown that follows an NCBI 429).';
+    readonly recovery: 'Wait the number of seconds in `retryAfter`, then retry; the NCBI request queue is saturated or cooling down after a rate limit.';
     readonly retryable: true;
+    readonly thrownBy: 'service';
 }, {
     readonly reason: 'ncbi_unreachable';
     readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.ServiceUnavailable;
     readonly when: 'NCBI E-utilities is unreachable after all retry attempts.';
     readonly recovery: 'Retry after a brief delay; NCBI was unreachable across all retry attempts.';
     readonly retryable: true;
+    readonly thrownBy: 'service';
 }, {
     readonly reason: 'ncbi_deadline_exceeded';
     readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.Timeout;
     readonly when: 'Total request deadline expired before NCBI returned a response.';
     readonly recovery: 'Reduce batch size or retry; NCBI may be under temporary load.';
     readonly retryable: true;
+    readonly thrownBy: 'service';
 }, {
     readonly reason: 'ncbi_invalid_response';
     readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.SerializationError;
     readonly when: 'NCBI returned a body that could not be parsed (invalid XML/JSON).';
     readonly recovery: 'Retry the request; NCBI returned a malformed response that could not be parsed.';
     readonly retryable: true;
+    readonly thrownBy: 'service';
 }, {
     readonly reason: 'ncbi_resource_not_found';
     readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.NotFound;
     readonly when: 'NCBI returned a structured "not found" error for the requested ID(s).';
     readonly recovery: 'Verify the ID exists in PubMed; the resource was not found in NCBI and retrying will not help.';
     readonly retryable: false;
+    readonly thrownBy: 'service';
 }, {
     readonly reason: 'blank_query';
     readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.ValidationError;

package/dist/mcp-server/tools/definitions/search-articles.tool.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"search-articles.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/search-articles.tool.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAgJjD,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EAsa7B,CAAC"}
+{"version":3,"file":"search-articles.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/search-articles.tool.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAgJjD,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EAsa7B,CAAC"}

package/dist/mcp-server/tools/definitions/spell-check.tool.d.ts

@@ -13,33 +13,38 @@ export declare const spellCheckTool: import("@cyanheads/mcp-ts-core").ToolDefini
 }, z.core.$strip>, readonly [{
     readonly reason: 'queue_full';
     readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.RateLimited;
-    readonly when: 'Local NCBI request queue is at capacity.';
-    readonly recovery: 'Retry after 1-2 seconds; the request queue hit the NCBI rate limit.';
+    readonly when: 'The local NCBI request queue shed the call — the queue is full, or the call cannot start before its total deadline (for example behind the cooldown that follows an NCBI 429).';
+    readonly recovery: 'Wait the number of seconds in `retryAfter`, then retry; the NCBI request queue is saturated or cooling down after a rate limit.';
     readonly retryable: true;
+    readonly thrownBy: 'service';
 }, {
     readonly reason: 'ncbi_unreachable';
     readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.ServiceUnavailable;
     readonly when: 'NCBI E-utilities is unreachable after all retry attempts.';
     readonly recovery: 'Retry after a brief delay; NCBI was unreachable across all retry attempts.';
     readonly retryable: true;
+    readonly thrownBy: 'service';
 }, {
     readonly reason: 'ncbi_deadline_exceeded';
     readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.Timeout;
     readonly when: 'Total request deadline expired before NCBI returned a response.';
     readonly recovery: 'Reduce batch size or retry; NCBI may be under temporary load.';
     readonly retryable: true;
+    readonly thrownBy: 'service';
 }, {
     readonly reason: 'ncbi_invalid_response';
     readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.SerializationError;
     readonly when: 'NCBI returned a body that could not be parsed (invalid XML/JSON).';
     readonly recovery: 'Retry the request; NCBI returned a malformed response that could not be parsed.';
     readonly retryable: true;
+    readonly thrownBy: 'service';
 }, {
     readonly reason: 'ncbi_resource_not_found';
     readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.NotFound;
     readonly when: 'NCBI returned a structured "not found" error for the requested ID(s).';
     readonly recovery: 'Verify the ID exists in PubMed; the resource was not found in NCBI and retrying will not help.';
     readonly retryable: false;
+    readonly thrownBy: 'service';
 }, {
     readonly reason: 'blank_query';
     readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.ValidationError;

package/dist/mcp-server/tools/definitions/spell-check.tool.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"spell-check.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/spell-check.tool.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAKjD,eAAO,MAAM,cAAc;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;cA+DzB,CAAC"}
+{"version":3,"file":"spell-check.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/spell-check.tool.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAKjD,eAAO,MAAM,cAAc;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;cA+DzB,CAAC"}