@cyanheads/pubmed-mcp-server 2.10.10 → 2.10.12

package/dist/services/ncbi/types.d.ts

@@ -93,6 +93,11 @@ export interface XmlAuthor {
 }
 export interface XmlAuthorList {
     '@_CompleteYN'?: 'Y' | 'N';
+    /**
+     * `authors` or `editors` — the DTD declares it `#IMPLIED`, and a `Book` can
+     * carry one list of each. Never infer the role from position: read this.
+     */
+    '@_Type'?: 'authors' | 'editors';
     Author?: XmlAuthor[] | XmlAuthor;
 }
 export interface XmlPublicationType extends XmlTextElement {
@@ -220,11 +225,75 @@ export interface XmlPubmedArticle {
         ReferenceList?: unknown;
     };
 }
+/** `Book/Publisher` — the citation's imprint. */
+export interface XmlPublisher {
+    PublisherLocation?: XmlTextElement;
+    PublisherName?: XmlTextElement;
+}
+/**
+ * `BookDocument/Book` — the containing book. `AuthorList` is repeatable and
+ * carries a `Type` attribute distinguishing the book's editors from its authors.
+ */
+export interface XmlBook {
+    AuthorList?: XmlAuthorList[] | XmlAuthorList;
+    BeginningDate?: XmlPubDate;
+    BookTitle?: XmlTextElement | string;
+    CollectionTitle?: XmlTextElement | string;
+    Edition?: XmlTextElement;
+    ELocationID?: XmlELocationID[] | XmlELocationID;
+    EndingDate?: XmlPubDate;
+    /** Repeatable — two ISBNs on one record is normal (print and electronic). */
+    Isbn?: XmlTextElement[] | XmlTextElement | string | string[];
+    Medium?: XmlTextElement;
+    PubDate?: XmlPubDate;
+    Publisher?: XmlPublisher;
+    ReportNumber?: XmlTextElement;
+    Volume?: XmlTextElement;
+    VolumeTitle?: XmlTextElement;
+}
+/**
+ * `PubmedBookArticle/BookDocument` — one Bookshelf record. `ArticleTitle` is
+ * absent on a whole-book record, which is what separates it from a chapter.
+ * `PublicationType` sits directly on the document, not inside a
+ * `PublicationTypeList` as it does for a journal article.
+ *
+ * `Sections`, `ReferenceList` and `ItemList` are deliberately not declared:
+ * chapter body content is out of scope, metadata and abstract only.
+ */
+export interface XmlBookDocument {
+    Abstract?: XmlAbstract;
+    ArticleIdList?: XmlArticleIdList;
+    ArticleTitle?: XmlTextElement | string;
+    AuthorList?: XmlAuthorList[] | XmlAuthorList;
+    Book: XmlBook;
+    ContributionDate?: XmlArticleDate;
+    DateRevised?: XmlArticleDate;
+    KeywordList?: XmlKeywordList[] | XmlKeywordList;
+    Language?: XmlTextElement[] | XmlTextElement;
+    LocationLabel?: XmlTextElement[] | XmlTextElement;
+    Pagination?: XmlPagination;
+    PMID: XmlPMID;
+    PublicationType?: XmlPublicationType[] | XmlPublicationType;
+    VernacularTitle?: XmlTextElement;
+}
+export interface XmlPubmedBookArticle {
+    BookDocument: XmlBookDocument;
+    PubmedBookData?: {
+        ArticleIdList?: XmlArticleIdList;
+        History?: {
+            PubMedPubDate: (XmlArticleDate & {
+                '@_PubStatus'?: string;
+            })[];
+        };
+        PublicationStatus?: XmlTextElement;
+    };
+}
 export interface XmlPubmedArticleSet {
     DeleteCitation?: {
         PMID: XmlPMID[] | XmlPMID;
     };
     PubmedArticle?: XmlPubmedArticle[] | XmlPubmedArticle;
+    PubmedBookArticle?: XmlPubmedBookArticle[] | XmlPubmedBookArticle;
 }
 export interface ParsedArticleAuthor {
     affiliationIndices?: number[];
@@ -248,6 +317,15 @@ export interface ParsedJournalPublicationDate {
 }
 export interface ParsedJournalInfo {
     eIssn?: string;
+    /**
+     * Electronic article locator from `ELocationID` — the publisher-assigned
+     * article number carried by journals that do not paginate. Distinct from
+     * {@link pages} and never a substitute for it; DOI-typed `ELocationID`
+     * entries are excluded, since the DOI has its own field.
+     */
+    elocationId?: string;
+    /** `EIdType` of the locator (e.g. `pii`). Free-form — NCBI's DTD is open. */
+    elocationIdType?: string;
     isoAbbreviation?: string;
     issn?: string;
     issue?: string;
@@ -273,19 +351,83 @@ export interface ParsedGrant {
     country?: string;
     grantId?: string;
 }
+/**
+ * Which kind of record a {@link ParsedArticle} came from. PubMed's own
+ * `publicationTypes` cannot carry this — a Bookshelf record's `PublicationType`
+ * is `Review` or `Study Guide`, never anything book-shaped — so the distinction
+ * is made here, at parse time, from the element the record arrived in. (#114)
+ *
+ * - `journal-article` — a `PubmedArticle`.
+ * - `book-chapter` — a `BookDocument` carrying its own `ArticleTitle`.
+ * - `book` — a `BookDocument` with no `ArticleTitle`: the whole book is the record.
+ */
+export type ParsedRecordType = 'journal-article' | 'book-chapter' | 'book';
+/**
+ * An editor of the containing book. Deliberately narrower than
+ * {@link ParsedArticleAuthor} — name parts only, no affiliations or ORCID.
+ * Editors are a citation credit, not a contributor record, and the framework's
+ * `format-parity` linter stops walking at depth 8: reusing the author shape
+ * would put `book.editors[].affiliationIndices[]` at exactly that limit, with no
+ * headroom for any later field. Assignable to {@link ParsedArticleAuthor}, so
+ * the citation formatters' author helpers take an editor unchanged.
+ */
+export interface ParsedBookEditor {
+    /** Group editor, e.g. a committee. Kept so such an entry is not silently dropped. */
+    collectiveName?: string;
+    firstName?: string;
+    initials?: string;
+    lastName?: string;
+}
+/**
+ * The containing book of a `book-chapter`, or the book itself for a `book`
+ * record. Present only on those two record types — never synthesized, and never
+ * a stand-in for {@link ParsedJournalInfo}.
+ */
+export interface ParsedBookInfo {
+    /** NCBI Bookshelf accession (`NBK1247`) — resolves at `ncbi.nlm.nih.gov/books/<accession>/`. */
+    accession?: string;
+    /** First year of a continuously-updated book (GeneReviews runs 1993 →). */
+    beginningDate?: string;
+    /** Series the book belongs to, e.g. "The National Academies Collection". */
+    collectionTitle?: string;
+    /** Book-level DOI from `Book/ELocationID`. Distinct from the record's own `doi`. */
+    doi?: string;
+    edition?: string;
+    editors?: ParsedBookEditor[];
+    /** Last year of a closed date range. Absent while a book is still being updated. */
+    endingDate?: string;
+    /** Every `Book/Isbn`, verbatim — leading zeros intact, print and electronic alike. */
+    isbns?: string[];
+    /** `Book/Medium` — `Internet` wherever NCBI supplies it. */
+    medium?: string;
+    /** Year from `Book/PubDate`. */
+    pubDate?: string;
+    publisher?: string;
+    publisherLocation?: string;
+    title?: string;
+}
 export interface ParsedArticle {
     abstractText?: string;
     affiliations?: string[];
     articleDates?: ParsedArticleDate[];
     authors?: ParsedArticleAuthor[];
+    /** Set on `book-chapter` and `book` records only. */
+    book?: ParsedBookInfo;
     doi?: string;
     grantList?: ParsedGrant[];
+    /**
+     * Absent on `book-chapter` and `book` records — a Bookshelf record has no
+     * journal, and the book title is never promoted into one.
+     */
     journalInfo?: ParsedJournalInfo;
     keywords?: string[];
     meshTerms?: ParsedMeshTerm[];
     pmcId?: string;
     pmid: string;
     publicationTypes?: string[];
+    /** Discriminator — read this, never the title or `publicationTypes`. */
+    recordType: ParsedRecordType;
+    /** Chapter title, or the book title on a whole-book record. */
     title?: string;
 }
 /**
@@ -355,7 +497,11 @@ export interface ESummaryDocumentSummary {
     Authors?: XmlESummaryAuthorRaw[] | {
         Author: XmlESummaryAuthorRaw[] | XmlESummaryAuthorRaw;
     } | string;
+    /** Containing book — present on a Bookshelf record, where `Source` is empty. */
+    BookTitle?: string;
     DOI?: string;
+    /** `chapter`, `book`, or `citation` (an ordinary journal article). */
+    DocType?: string;
     EPubDate?: string;
     ESSN?: string;
     FullJournalName?: string;
@@ -368,6 +514,8 @@ export interface ESummaryDocumentSummary {
     LastAuthor?: string;
     Pages?: string;
     PubDate?: string;
+    /** Publisher of the containing book. Absent for journal records. */
+    PublisherName?: string;
     PubStatus?: string;
     PubType?: string[];
     RecordStatus?: string;
@@ -393,17 +541,34 @@ export interface ESummaryResponseContainer {
 }
 export interface ParsedBriefSummary {
     /**
-     * Full, untruncated author roster from ESummary. `authors` collapses to three
-     * names for display, so any check that must consider every author (e.g.
+     * Full, untruncated author roster from ESummary — the same people `authors`
+     * collapses for display, so any check that must consider every author (e.g.
      * verifying a queried author appears on the article) reads this instead.
+     * Editors are not in it; they are in {@link editors}.
      */
     authorNames?: string[];
     authors?: string;
+    /**
+     * Containing book title. ESummary leaves `Source` and `FullJournalName` empty
+     * on a Bookshelf record and carries the venue here instead, so a book record
+     * renders with a venue rather than none. (#114)
+     */
+    bookTitle?: string;
+    /** ESummary `DocType` — `chapter`, `book`, or `citation` (an ordinary article). */
+    docType?: string;
     doi?: string;
+    /**
+     * Book editors (`AuthType=Editor`). ESummary lists them ahead of the chapter's
+     * own authors, so they are split out rather than allowed to displace the
+     * authors in the display string.
+     */
+    editors?: string[];
     epubDate?: string;
     pmcId?: string;
     pmid: string;
     pubDate?: string;
+    /** Publisher of the containing book. Absent for journal records. */
+    publisherName?: string;
     source?: string;
     title?: string;
 }
@@ -550,6 +715,11 @@ export interface ParsedPmcAuthor {
 }
 /** Parsed PMC journal info. */
 export interface ParsedPmcJournal {
+    /**
+     * Electronic article locator from JATS `<elocation-id>`. JATS carries no type
+     * attribute, so there is no counterpart to `ParsedJournalInfo.elocationIdType`.
+     */
+    elocationId?: string;
     issn?: string;
     issue?: string;
     pages?: string;

package/dist/services/ncbi/types.d.ts.map

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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@cyanheads/pubmed-mcp-server",
-  "version": "2.10.10",
+  "version": "2.10.12",
   "mcpName": "io.github.cyanheads/pubmed-mcp-server",
   "description": "Search PubMed/Europe PMC, fetch articles and full text (PMC/EPMC/Unpaywall), citations, MeSH terms via MCP. STDIO or Streamable HTTP.",
   "type": "module",

package/server.json

@@ -6,7 +6,7 @@
     "url": "https://github.com/cyanheads/pubmed-mcp-server",
     "source": "github"
   },
-  "version": "2.10.10",
+  "version": "2.10.12",
   "remotes": [
     {
       "type": "streamable-http",
@@ -19,7 +19,7 @@
       "registryBaseUrl": "https://registry.npmjs.org",
       "identifier": "@cyanheads/pubmed-mcp-server",
       "runtimeHint": "bun",
-      "version": "2.10.10",
+      "version": "2.10.12",
       "packageArguments": [
         {
           "type": "positional",
@@ -66,7 +66,7 @@
       "registryBaseUrl": "https://registry.npmjs.org",
       "identifier": "@cyanheads/pubmed-mcp-server",
       "runtimeHint": "bun",
-      "version": "2.10.10",
+      "version": "2.10.12",
       "packageArguments": [
         {
           "type": "positional",