@cyanheads/pubmed-mcp-server 2.10.0 → 2.10.2

package/dist/services/ncbi/ncbi-service.js.map

@@ -1 +1 @@
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package/dist/services/ncbi/parsing/text-helpers.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"text-helpers.d.ts","sourceRoot":"","sources":["../../../../src/services/ncbi/parsing/text-helpers.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAmBH;;;;;;;GAOG;AACH,wBAAgB,kBAAkB,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAcvD;AAED;;;;;;;;GAQG;AACH,wBAAgB,aAAa,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAKlD"}
+{"version":3,"file":"text-helpers.d.ts","sourceRoot":"","sources":["../../../../src/services/ncbi/parsing/text-helpers.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAiCH;;;;;;;GAOG;AACH,wBAAgB,kBAAkB,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAcvD;AAED;;;;;;;;GAQG;AACH,wBAAgB,aAAa,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAKlD"}

package/dist/services/ncbi/parsing/text-helpers.js

@@ -19,7 +19,21 @@ const NAMED_ENTITIES = {
 };
 /** A well-formed numeric (`­`, `­`) or named (`&`) character reference. */
 const ENTITY_RE = /&(#x[0-9a-f]+|#\d+|[a-z][a-z0-9]*);/gi;
-const MARKUP_TAG_RE = /<[^>]+>/g;
+/**
+ * A structural tag: `<` immediately followed by an optional `/` and a tag-name
+ * letter, then a tag body carrying no further angle bracket.
+ *
+ * Both restrictions exist to keep statistical notation intact. Requiring a
+ * leading letter leaves `P<0.001` alone; forbidding `<` inside the body stops a
+ * match that opened on a stray `<` from spanning across the next real tag and
+ * swallowing the prose between them (`n<N ... <bold>` keeps its text). The
+ * remaining gap is a stray `<` and `>` pair with a letter after the `<` and no
+ * tag between them — `a<b and c>d` still strips to `a d`. Closing it would take
+ * a tag-name allowlist, which would silently drop unknown JATS elements, so the
+ * looser pattern is deliberate: it errs toward leaving markup visible rather
+ * than deleting text. (#94)
+ */
+const MARKUP_TAG_RE = /<\/?[A-Za-z][^<>]*>/g;
 const SOFT_HYPHEN_RE = /­/g;
 const WHITESPACE_RE = /\s+/g;
 /**

package/dist/services/ncbi/parsing/text-helpers.js.map

@@ -1 +1 @@
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package/dist/services/ncbi/response-handler.d.ts.map

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+{"version":3,"file":"response-handler.d.ts","sourceRoot":"","sources":["../../../src/services/ncbi/response-handler.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAiBH,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,YAAY,CAAC;AAkMrD;;;;;;;;;;;;;;;;GAgBG;AACH,wBAAgB,mBAAmB,CAAC,GAAG,EAAE,MAAM,GAAG,MAAM,CAMvD;AAED;;;GAGG;AACH,qBAAa,mBAAmB;IAC9B,OAAO,CAAC,QAAQ,CAAC,SAAS,CAAgB;IAC1C;;;;;;;;;;OAUG;IACH,OAAO,CAAC,QAAQ,CAAC,gBAAgB,CAAgB;IAEjD,cAkBC;IAED;;;;;;;;OAQG;IACH,OAAO,CAAC,cAAc;IA4BtB,wBAAwB,CAAC,SAAS,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,GAAG,MAAM,EAAE,CAoBrE;IAED,sBAAsB,CAAC,CAAC,EACtB,YAAY,EAAE,MAAM,EACpB,QAAQ,EAAE,MAAM,EAChB,OAAO,CAAC,EAAE,kBAAkB,GAC3B,CAAC,CAyNH;CACF"}

package/dist/services/ncbi/response-handler.js

@@ -61,6 +61,7 @@ const NCBI_ARRAY_JPATHS = new Set([
  */
 const ERROR_PATHS = [
     'eLinkResult.ERROR',
+    'eSearchResult.ERROR',
     'eSummaryResult.ERROR',
     'PubmedArticleSet.ErrorList.CannotRetrievePMID',
     'ERROR',

package/dist/services/ncbi/response-handler.js.map

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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@cyanheads/pubmed-mcp-server",
-  "version": "2.10.0",
+  "version": "2.10.2",
   "mcpName": "io.github.cyanheads/pubmed-mcp-server",
   "description": "Search PubMed/Europe PMC, fetch articles and full text (PMC/EPMC/Unpaywall), citations, MeSH terms via MCP. STDIO or Streamable HTTP.",
   "type": "module",

package/server.json

@@ -6,7 +6,7 @@
     "url": "https://github.com/cyanheads/pubmed-mcp-server",
     "source": "github"
   },
-  "version": "2.10.0",
+  "version": "2.10.2",
   "remotes": [
     {
       "type": "streamable-http",
@@ -19,7 +19,7 @@
       "registryBaseUrl": "https://registry.npmjs.org",
       "identifier": "@cyanheads/pubmed-mcp-server",
       "runtimeHint": "bun",
-      "version": "2.10.0",
+      "version": "2.10.2",
       "packageArguments": [
         {
           "type": "positional",
@@ -66,7 +66,7 @@
       "registryBaseUrl": "https://registry.npmjs.org",
       "identifier": "@cyanheads/pubmed-mcp-server",
       "runtimeHint": "bun",
-      "version": "2.10.0",
+      "version": "2.10.2",
       "packageArguments": [
         {
           "type": "positional",