@cyanheads/pubmed-mcp-server 2.1.0 → 2.1.1

package/README.md

@@ -7,7 +7,7 @@
 
 <div align="center">
 
-[![npm](https://img.shields.io/npm/v/@cyanheads/pubmed-mcp-server?style=flat-square&logo=npm&logoColor=white)](https://www.npmjs.com/package/@cyanheads/pubmed-mcp-server) [![Version](https://img.shields.io/badge/Version-2.1.0-blue.svg?style=flat-square)](./CHANGELOG.md) [![MCP Spec](https://img.shields.io/badge/MCP%20Spec-2025--11--25-8A2BE2.svg?style=flat-square)](https://modelcontextprotocol.io/specification/2025-11-25) 
+[![npm](https://img.shields.io/npm/v/@cyanheads/pubmed-mcp-server?style=flat-square&logo=npm&logoColor=white)](https://www.npmjs.com/package/@cyanheads/pubmed-mcp-server) [![Version](https://img.shields.io/badge/Version-2.1.1-blue.svg?style=flat-square)](./CHANGELOG.md) [![MCP Spec](https://img.shields.io/badge/MCP%20Spec-2025--11--25-8A2BE2.svg?style=flat-square)](https://modelcontextprotocol.io/specification/2025-11-25) 
 
 [![MCP SDK](https://img.shields.io/badge/MCP%20SDK-^1.27.1-green.svg?style=flat-square)](https://modelcontextprotocol.io/) [![License](https://img.shields.io/badge/License-Apache%202.0-orange.svg?style=flat-square)](./LICENSE) [![Status](https://img.shields.io/badge/Status-Stable-brightgreen.svg?style=flat-square)](https://github.com/cyanheads/pubmed-mcp-server/issues) [![TypeScript](https://img.shields.io/badge/TypeScript-^5.9.3-3178C6.svg?style=flat-square)](https://www.typescriptlang.org/) [![Bun](https://img.shields.io/badge/Bun-v1.3.2-blueviolet.svg?style=flat-square)](https://bun.sh/)
 

package/dist/index.js

@@ -135501,7 +135501,7 @@ config(en_default());
 // package.json
 var package_default = {
   name: "@cyanheads/pubmed-mcp-server",
-  version: "2.1.0",
+  version: "2.1.1",
   mcpName: "io.github.cyanheads/pubmed-mcp-server",
   description: "MCP server for PubMed/NCBI E-utilities integration. Search articles, fetch metadata, generate citations, explore MeSH terms, and discover related research.",
   main: "dist/index.js",
@@ -139126,8 +139126,8 @@ function extractTextValues(source, prefix = "") {
   const items = Array.isArray(source) ? source : [source];
   const messages = [];
   for (const item of items) {
-    if (typeof item === "string") {
-      messages.push(`${prefix}${item}`);
+    if (typeof item === "string" || typeof item === "number" || typeof item === "boolean") {
+      messages.push(`${prefix}${String(item)}`);
     } else if (item && typeof item["#text"] === "string") {
       messages.push(`${prefix}${item["#text"]}`);
     }
@@ -139187,7 +139187,7 @@ class NcbiResponseHandler {
         });
       }
       const parsedXml = this.xmlParser.parse(responseText);
-      const hasError = resolvePath(parsedXml, "eLinkResult.ERROR") !== undefined || resolvePath(parsedXml, "eSummaryResult.ERROR") !== undefined || resolvePath(parsedXml, "PubmedArticleSet.ErrorList") !== undefined || resolvePath(parsedXml, "ERROR") !== undefined;
+      const hasError = ERROR_PATHS.some((path) => resolvePath(parsedXml, path) !== undefined);
       if (hasError) {
         const errorMessages = this.extractNcbiErrorMessages(parsedXml);
         logger.error("NCBI API returned an error in XML response.", {
@@ -151008,7 +151008,7 @@ function parsePmcArticle(xmlArticle) {
   const keywords = extractKeywords(articleMeta?.["kwd-group"]);
   const sections = extractBodySections(xmlArticle.body);
   const references = extractReferences(xmlArticle.back);
-  const normalizedPmcId = pmcId.startsWith("PMC") ? pmcId : `PMC${pmcId}`;
+  const normalizedPmcId = !pmcId ? "" : pmcId.startsWith("PMC") ? pmcId : `PMC${pmcId}`;
   return {
     pmcId: normalizedPmcId,
     ...pmid && { pmid },
@@ -151531,30 +151531,35 @@ function splitPages(pages) {
   if (!pages)
     return {};
   const parts = pages.split(/[-\u2013\u2014]/).map((p) => p.trim());
-  if (parts.length >= 2) {
-    const start2 = parts[0];
-    const end = parts[1];
-    return {
-      ...start2 !== undefined && { start: start2 },
-      ...end !== undefined && { end }
-    };
-  }
-  const start = parts[0];
-  return start !== undefined ? { start } : {};
+  const [start, end] = parts;
+  if (start && end)
+    return { start, end };
+  return start ? { start } : {};
 }
 function escapeBibtex(text) {
-  return text.replace(/\\/g, "\\textbackslash{}").replace(/&/g, "\\&").replace(/%/g, "\\%").replace(/\$/g, "\\$").replace(/#/g, "\\#").replace(/_/g, "\\_").replace(/\{/g, "\\{").replace(/\}/g, "\\}").replace(/~/g, "\\textasciitilde{}").replace(/\^/g, "\\textasciicircum{}");
+  return text.replace(/[\\&%$#_{}~^]/g, (ch) => {
+    switch (ch) {
+      case "\\":
+        return "\\textbackslash{}";
+      case "~":
+        return "\\textasciitilde{}";
+      case "^":
+        return "\\textasciicircum{}";
+      default:
+        return `\\${ch}`;
+    }
+  });
 }
 function formatAuthorApa(author) {
   if (author.collectiveName)
     return author.collectiveName;
   const last = author.lastName ?? "";
-  const initials = author.initials ?? author.firstName?.split(/[\s-]+/).map((part) => `${part[0]}.`).join(" ");
-  if (!last)
-    return initials ?? "";
+  const initials = author.initials ?? author.firstName?.split(/[\s-]+/).filter(Boolean).map((part) => `${part[0]}.`).join(" ");
   if (!initials)
     return last;
   const formatted = initials.replace(/[^A-Za-z]/g, "").split("").map((c) => `${c}.`).join(" ");
+  if (!last)
+    return formatted;
   return `${last}, ${formatted}`;
 }
 function formatAuthorsApa(authors) {
@@ -151846,6 +151851,9 @@ function extractJournalInfo(journalXml, articleXml) {
   const issnType = getAttribute(issnElement, "IssnType");
   const issn = issnType === "Electronic" ? undefined : issnValue || undefined;
   const eIssn = issnType === "Electronic" ? issnValue || undefined : undefined;
+  const month = getText(pubDate?.Month);
+  const day = getText(pubDate?.Day);
+  const medlineDate = getText(pubDate?.MedlineDate);
   return {
     title: getText(journalXml.Title),
     isoAbbreviation: getText(journalXml.ISOAbbreviation),
@@ -151856,9 +151864,9 @@ function extractJournalInfo(journalXml, articleXml) {
     pages: getText(articleXml?.Pagination?.MedlinePgn),
     publicationDate: {
       ...year && { year },
-      ...getText(pubDate?.Month) && { month: getText(pubDate?.Month) },
-      ...getText(pubDate?.Day) && { day: getText(pubDate?.Day) },
-      ...getText(pubDate?.MedlineDate) && { medlineDate: getText(pubDate?.MedlineDate) }
+      ...month && { month },
+      ...day && { day },
+      ...medlineDate && { medlineDate }
     }
   };
 }

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@cyanheads/pubmed-mcp-server",
-  "version": "2.1.0",
+  "version": "2.1.1",
   "mcpName": "io.github.cyanheads/pubmed-mcp-server",
   "description": "MCP server for PubMed/NCBI E-utilities integration. Search articles, fetch metadata, generate citations, explore MeSH terms, and discover related research.",
   "main": "dist/index.js",