@cyanheads/pubchem-mcp-server 0.5.1 → 0.6.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +3 -1
- package/dist/mcp-server/tools/definitions/get-bioactivity.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/get-bioactivity.tool.js +1 -0
- package/dist/mcp-server/tools/definitions/get-bioactivity.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/get-compound-interactions.tool.d.ts +14 -0
- package/dist/mcp-server/tools/definitions/get-compound-interactions.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/get-compound-interactions.tool.js +101 -12
- package/dist/mcp-server/tools/definitions/get-compound-interactions.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/get-compound-xrefs.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/get-compound-xrefs.tool.js +1 -0
- package/dist/mcp-server/tools/definitions/get-compound-xrefs.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/index.d.ts +17 -0
- package/dist/mcp-server/tools/definitions/index.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/search-assays.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/search-assays.tool.js +1 -0
- package/dist/mcp-server/tools/definitions/search-assays.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/search-compounds.tool.d.ts +3 -0
- package/dist/mcp-server/tools/definitions/search-compounds.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/search-compounds.tool.js +66 -33
- package/dist/mcp-server/tools/definitions/search-compounds.tool.js.map +1 -1
- package/dist/services/pubchem/pubchem-client.d.ts +29 -8
- package/dist/services/pubchem/pubchem-client.d.ts.map +1 -1
- package/dist/services/pubchem/pubchem-client.js +102 -37
- package/dist/services/pubchem/pubchem-client.js.map +1 -1
- package/dist/services/pubchem/types.d.ts +51 -0
- package/dist/services/pubchem/types.d.ts.map +1 -1
- package/dist/services/pubchem/types.js.map +1 -1
- package/manifest.json +1 -1
- package/package.json +1 -1
- package/server.json +3 -3
package/README.md
CHANGED
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@@ -7,7 +7,7 @@
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<div align="center">
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-
[](./CHANGELOG.md) [](./LICENSE) [](https://github.com/users/cyanheads/packages/container/package/pubchem-mcp-server) [](https://modelcontextprotocol.io/) [](https://www.npmjs.com/package/@cyanheads/pubchem-mcp-server) [](https://www.typescriptlang.org/) [](https://bun.sh/)
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</div>
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@@ -52,6 +52,7 @@ Search PubChem for chemical compounds across five search modes.
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- **Formula search** — find compounds by molecular formula in Hill notation
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- **Substructure/superstructure** — find compounds containing or contained within a query structure
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- **2D similarity** — find structurally similar compounds by Tanimoto similarity (configurable threshold)
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- Caps at 200 CIDs per page; `offset` pages further, to a ceiling of 10,000. Identifier lookups page over the set already resolved; formula and structure searches widen their bounded upstream request to reach a page, so deep pages cost more upstream
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- Optionally hydrate results with properties to avoid a follow-up details call
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---
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@@ -96,6 +97,7 @@ Get a compound's interaction data by CID.
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- Drug-drug interactions (DrugBank), drug-food interactions, and chemical-target binding/activity (BindingDB, ChEMBL, and others)
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- Select which interaction kinds to fetch and cap entries per kind
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- Paged per kind: each reports its source-record total and its own `nextOffset`, and `offset` reaches the records past a page
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- Each entry carries its originating source — coverage is richest for approved drugs
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---
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@@ -1 +1 @@
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-
{"version":3,"file":"get-bioactivity.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/get-bioactivity.tool.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAIjD,eAAO,MAAM,cAAc;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
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{"version":3,"file":"get-bioactivity.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/get-bioactivity.tool.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAIjD,eAAO,MAAM,cAAc;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EAqPzB,CAAC"}
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@@ -42,6 +42,7 @@ export const getBioactivity = tool('pubchem_get_bioactivity', {
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.describe('Zero-based index of the first assay to return, applied after the outcome and target filters. Pass the nextOffset from a previous call to read the following page. Default: 0.'),
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maxResults: z
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.number()
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.int()
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.min(1)
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.max(100)
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.default(20)
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+
{"version":3,"file":"get-bioactivity.tool.js","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/get-bioactivity.tool.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAE,IAAI,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,sCAAsC,CAAC;AACxE,OAAO,EAAE,UAAU,EAAE,MAAM,qBAAqB,CAAC;AAEjD,MAAM,CAAC,MAAM,cAAc,GAAG,IAAI,CAAC,yBAAyB,EAAE;IAC5D,KAAK,EAAE,iBAAiB;IACxB,WAAW,EACT,kYAAkY;IACpY,WAAW,EAAE;QACX,YAAY,EAAE,IAAI;QAClB,cAAc,EAAE,IAAI;QACpB,aAAa,EAAE,IAAI;KACpB;IACD,KAAK,EAAE,CAAC,CAAC,MAAM,CAAC;QACd,GAAG,EAAE,CAAC;aACH,MAAM,EAAE;aACR,GAAG,EAAE;aACL,QAAQ,EAAE;aACV,QAAQ,CAAC,8EAA8E,CAAC;QAC3F,aAAa,EAAE,CAAC;aACb,IAAI,CAAC,CAAC,QAAQ,EAAE,UAAU,EAAE,KAAK,CAAC,CAAC;aACnC,OAAO,CAAC,KAAK,CAAC;aACd,QAAQ,CACP,+JAA+J,CAChK;QACH,YAAY,EAAE,CAAC;aACZ,MAAM,EAAE;aACR,GAAG,EAAE;aACL,QAAQ,EAAE;aACV,QAAQ,EAAE;aACV,QAAQ,CACP,2OAA2O,CAC5O;QACH,eAAe,EAAE,CAAC;aACf,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,CACP,kMAAkM,CACnM;QACH,MAAM,EAAE,CAAC;aACN,MAAM,EAAE;aACR,GAAG,EAAE;aACL,GAAG,CAAC,CAAC,CAAC;aACN,OAAO,CAAC,CAAC,CAAC;aACV,QAAQ,CACP,+KAA+K,CAChL;QACH,UAAU,EAAE,CAAC;aACV,MAAM,EAAE;aACR,GAAG,EAAE;aACL,GAAG,CAAC,CAAC,CAAC;aACN,GAAG,CAAC,GAAG,CAAC;aACR,OAAO,CAAC,EAAE,CAAC;aACX,QAAQ,CACP,2JAA2J,CAC5J;KACJ,CAAC;IACF,MAAM,EAAE,CAAC,CAAC,MAAM,CAAC;QACf,GAAG,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,sBAAsB,CAAC;QAChD,WAAW,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,wCAAwC,CAAC;QAC1E,WAAW,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,+BAA+B,CAAC;QACjE,aAAa,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,iCAAiC,CAAC;QACrE,OAAO,EAAE,CAAC;aACP,KAAK,CACJ,CAAC;aACE,MAAM,CAAC;YACN,GAAG,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,mBAAmB,CAAC;YAC7C,SAAS,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,mBAAmB,CAAC;YACnD,OAAO,EAAE,CAAC;iBACP,MAAM,EAAE;iBACR,QAAQ,CAAC,gEAAgE,CAAC;YAC7E,eAAe,EAAE,CAAC;iBACf,MAAM,EAAE;iBACR,QAAQ,EAAE;iBACV,QAAQ,CAAC,6CAA6C,CAAC;YAC1D,YAAY,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,sBAAsB,CAAC;YACpE,cAAc,EAAE,CAAC;iBACd,KAAK,CACJ,CAAC;iBACE,MAAM,CAAC;gBACN,IAAI,EAAE,CAAC;qBACJ,MAAM,EAAE;qBACR,QAAQ,EAAE;qBACV,QAAQ,CACP,oEAAoE,CACrE;gBACH,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,iBAAiB,CAAC;gBAC7C,IAAI,EAAE,CAAC;qBACJ,MAAM,EAAE;qBACR,QAAQ,EAAE;qBACV,QAAQ,CAAC,+DAA+D,CAAC;aAC7E,CAAC;iBACD,QAAQ,CAAC,0CAA0C,CAAC,CACxD;iBACA,QAAQ,CAAC,qCAAqC,CAAC;SACnD,CAAC;aACD,QAAQ,CAAC,qBAAqB,CAAC,CACnC;aACA,QAAQ,CAAC,oCAAoC,CAAC;KAClD,CAAC;IACF,qFAAqF;IACrF,wFAAwF;IACxF,0DAA0D;IAC1D,EAAE;IACF,kFAAkF;IAClF,oFAAoF;IACpF,oFAAoF;IACpF,8EAA8E;IAC9E,UAAU,EAAE;QACV,aAAa,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,mDAAmD,CAAC;QACvF,YAAY,EAAE,CAAC;aACZ,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,CAAC,qEAAqE,CAAC;QAClF,aAAa,EAAE,CAAC;aACb,MAAM,EAAE;aACR,QAAQ,CACP,mFAAmF,CACpF;QACH,aAAa,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,+BAA+B,CAAC;QACnE,MAAM,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,+CAA+C,CAAC;QAC5E,UAAU,EAAE,CAAC;aACV,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,CACP,mGAAmG,CACpG;QACH,SAAS,EAAE,CAAC,CAAC,OAAO,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,kDAAkD,CAAC;QAC9F,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,+BAA+B,CAAC;QACtE,GAAG,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,sCAAsC,CAAC;QAC3E,MAAM,EAAE,CAAC;aACN,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,CACP,8FAA8F,CAC/F;KACJ;IAED,KAAK,CAAC,OAAO,CAAC,KAAK,EAAE,GAAG;QACtB,MAAM,MAAM,GAAG,gBAAgB,EAAE,CAAC;QAClC,MAAM,OAAO,GAAG,MAAM,MAAM,CAAC,eAAe,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC;QAExD,MAAM,WAAW,GAAG,OAAO,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,OAAO,KAAK,QAAQ,CAAC,CAAC,MAAM,CAAC;QACzE,MAAM,aAAa,GAAG,OAAO,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,OAAO,KAAK,UAAU,CAAC,CAAC,MAAM,CAAC;QAE7E,2EAA2E;QAC3E,yFAAyF;QACzF,IAAI,QAAQ,GAAG,OAAO,CAAC;QACvB,IAAI,KAAK,CAAC,aAAa,KAAK,QAAQ,EAAE,CAAC;YACrC,QAAQ,GAAG,QAAQ,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,OAAO,KAAK,QAAQ,CAAC,CAAC;QAC5D,CAAC;aAAM,IAAI,KAAK,CAAC,aAAa,KAAK,UAAU,EAAE,CAAC;YAC9C,QAAQ,GAAG,QAAQ,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,OAAO,KAAK,UAAU,CAAC,CAAC;QAC9D,CAAC;QAED,MAAM,WAAW,GAAG;YAClB,KAAK,CAAC,YAAY,IAAI,IAAI,CAAC,CAAC,CAAC,UAAU,KAAK,CAAC,YAAY,EAAE,CAAC,CAAC,CAAC,SAAS;YACvE,KAAK,CAAC,eAAe,CAAC,CAAC,CAAC,aAAa,KAAK,CAAC,eAAe,EAAE,CAAC,CAAC,CAAC,SAAS;SACzE;aACE,MAAM,CAAC,OAAO,CAAC;aACf,IAAI,CAAC,GAAG,CAAC,CAAC;QACb,IAAI,KAAK,CAAC,YAAY,IAAI,IAAI,EAAE,CAAC;YAC/B,QAAQ,GAAG,QAAQ,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,YAAY,KAAK,KAAK,CAAC,YAAY,CAAC,CAAC;QAC3E,CAAC;QACD,IAAI,KAAK,CAAC,eAAe,EAAE,CAAC;YAC1B,QAAQ,GAAG,QAAQ,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,eAAe,KAAK,KAAK,CAAC,eAAe,CAAC,CAAC;QACjF,CAAC;QAED,6EAA6E;QAC7E,iFAAiF;QACjF,MAAM,OAAO,GAAG,QAAQ,CAAC,KAAK,CAAC,KAAK,CAAC,MAAM,EAAE,KAAK,CAAC,MAAM,GAAG,KAAK,CAAC,UAAU,CAAC,CAAC;QAC9E,MAAM,UAAU,GAAG,KAAK,CAAC,MAAM,GAAG,OAAO,CAAC,MAAM,CAAC;QACjD,MAAM,OAAO,GAAG,UAAU,GAAG,QAAQ,CAAC,MAAM,CAAC;QAE7C,GAAG,CAAC,GAAG,CAAC,IAAI,CAAC,qBAAqB,EAAE;YAClC,GAAG,EAAE,KAAK,CAAC,GAAG;YACd,KAAK,EAAE,OAAO,CAAC,MAAM;YACrB,MAAM,EAAE,WAAW;YACnB,QAAQ,EAAE,QAAQ,CAAC,MAAM;YACzB,MAAM,EAAE,KAAK,CAAC,MAAM;YACpB,QAAQ,EAAE,OAAO,CAAC,MAAM;SACzB,CAAC,CAAC;QAEH,GAAG,CAAC,MAAM,CAAC;YACT,aAAa,EAAE,KAAK,CAAC,aAAa;YAClC,aAAa,EAAE,QAAQ,CAAC,MAAM;YAC9B,aAAa,EAAE,OAAO,CAAC,MAAM;YAC7B,MAAM,EAAE,KAAK,CAAC,MAAM;SACrB,CAAC,CAAC;QACH,IAAI,WAAW;YAAE,GAAG,CAAC,MAAM,CAAC,EAAE,YAAY,EAAE,WAAW,EAAE,CAAC,CAAC;QAC3D,IAAI,OAAO;YAAE,GAAG,CAAC,MAAM,CAAC,EAAE,UAAU,EAAE,CAAC,CAAC;QACxC,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACzB,GAAG,CAAC,MAAM,CAAC,MAAM,CACf,qCAAqC,KAAK,CAAC,GAAG,yFAAyF,CACxI,CAAC;QACJ,CAAC;aAAM,IAAI,QAAQ,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACjC,GAAG,CAAC,MAAM,CAAC,MAAM,CACf,WAAW;gBACT,CAAC,CAAC,OAAO,KAAK,CAAC,GAAG,QAAQ,OAAO,CAAC,MAAM,+CAA+C,WAAW,IAAI,KAAK,CAAC,aAAa,KAAK,KAAK,CAAC,CAAC,CAAC,wBAAwB,KAAK,CAAC,aAAa,GAAG,CAAC,CAAC,CAAC,EAAE,wFAAwF;gBACjR,CAAC,CAAC,OAAO,KAAK,CAAC,GAAG,QAAQ,OAAO,CAAC,MAAM,2CAA2C,KAAK,CAAC,aAAa,yCAAyC,CAClJ,CAAC;QACJ,CAAC;aAAM,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YAChC,GAAG,CAAC,MAAM,CAAC,MAAM,CACf,UAAU,KAAK,CAAC,MAAM,gBAAgB,QAAQ,CAAC,MAAM,uDAAuD,QAAQ,CAAC,MAAM,GAAG,CAC/H,CAAC;QACJ,CAAC;aAAM,IAAI,OAAO,EAAE,CAAC;YACnB,GAAG,CAAC,MAAM,CAAC,SAAS,CAAC;gBACnB,KAAK,EAAE,OAAO,CAAC,MAAM;gBACrB,GAAG,EAAE,KAAK,CAAC,UAAU;gBACrB,QAAQ,EAAE,kBAAkB,KAAK,CAAC,MAAM,GAAG,CAAC,IAAI,UAAU,OAAO,QAAQ,CAAC,MAAM,iBAAiB,UAAU,qBAAqB;aACjI,CAAC,CAAC;QACL,CAAC;QAED,OAAO;YACL,GAAG,EAAE,KAAK,CAAC,GAAG;YACd,WAAW,EAAE,OAAO,CAAC,MAAM;YAC3B,WAAW;YACX,aAAa;YACb,OAAO;SACR,CAAC;IACJ,CAAC;IAED,MAAM,CAAC,MAAM;QACX,MAAM,KAAK,GAAa;YACtB,wBAAwB,MAAM,CAAC,GAAG,EAAE;YACpC,iBAAiB,MAAM,CAAC,WAAW,cAAc,MAAM,CAAC,WAAW,gBAAgB,MAAM,CAAC,aAAa,EAAE;YACzG,EAAE;SACH,CAAC;QAEF,IAAI,MAAM,CAAC,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YAChC,KAAK,CAAC,IAAI,CAAC,4BAA4B,CAAC,CAAC;YACzC,OAAO,CAAC,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACpD,CAAC;QAED,KAAK,MAAM,CAAC,IAAI,MAAM,CAAC,OAAO,EAAE,CAAC;YAC/B,MAAM,MAAM,GAAG,CAAC,CAAC,CAAC,YAAY,CAAC,CAAC,CAAC,UAAU,CAAC,CAAC,YAAY,EAAE,CAAC,CAAC,CAAC,SAAS,EAAE,CAAC,CAAC,eAAe,CAAC;iBACxF,MAAM,CAAC,OAAO,CAAC;iBACf,IAAI,CAAC,KAAK,CAAC,CAAC;YACf,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,CAAC,GAAG,QAAQ,UAAU,CAAC,CAAC,CAAC,SAAS,CAAC,KAAK,CAAC,CAAC,OAAO,GAAG,CAAC,CAAC;YAC3E,IAAI,MAAM;gBAAE,KAAK,CAAC,IAAI,CAAC,aAAa,MAAM,EAAE,CAAC,CAAC;YAC9C,KAAK,MAAM,EAAE,IAAI,CAAC,CAAC,cAAc,EAAE,CAAC;gBAClC,MAAM,KAAK,GAAG,EAAE,CAAC,IAAI,IAAI,OAAO,CAAC;gBACjC,MAAM,IAAI,GAAG,EAAE,CAAC,IAAI,IAAI,EAAE,CAAC;gBAC3B,KAAK,CAAC,IAAI,CAAC,KAAK,KAAK,KAAK,EAAE,CAAC,KAAK,GAAG,IAAI,CAAC,CAAC,CAAC,IAAI,IAAI,EAAE,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC;YACjE,CAAC;YACD,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACjB,CAAC;QAED,OAAO,CAAC,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IACpD,CAAC;CACF,CAAC,CAAC"}
|
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@@ -10,6 +10,7 @@ export declare const getCompoundInteractions: import("@cyanheads/mcp-ts-core").T
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10
10
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"drug-food": "drug-food";
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11
11
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target: "target";
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12
12
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}>>>;
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13
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+
offset: z.ZodDefault<z.ZodNumber>;
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13
14
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maxEntries: z.ZodDefault<z.ZodNumber>;
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14
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}, z.core.$strip>, z.ZodObject<{
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15
16
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cid: z.ZodNumber;
|
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@@ -23,9 +24,22 @@ export declare const getCompoundInteractions: import("@cyanheads/mcp-ts-core").T
|
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23
24
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source: z.ZodString;
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24
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text: z.ZodString;
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25
26
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}, z.core.$strip>>;
|
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27
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+
paging: z.ZodArray<z.ZodObject<{
|
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28
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+
kind: z.ZodEnum<{
|
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29
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+
"drug-drug": "drug-drug";
|
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30
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+
"drug-food": "drug-food";
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31
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+
target: "target";
|
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32
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+
}>;
|
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33
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+
returnedCount: z.ZodNumber;
|
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34
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+
totalRecords: z.ZodNumber;
|
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35
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+
nextOffset: z.ZodOptional<z.ZodNumber>;
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36
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+
truncated: z.ZodBoolean;
|
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37
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+
}, z.core.$strip>>;
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26
38
|
}, z.core.$strip>, undefined, {
|
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27
39
|
readonly requestedKinds: z.ZodString;
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28
40
|
readonly returnedCount: z.ZodNumber;
|
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41
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+
readonly offset: z.ZodNumber;
|
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42
|
+
readonly nextOffset: z.ZodOptional<z.ZodNumber>;
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29
43
|
readonly failedKinds: z.ZodOptional<z.ZodString>;
|
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30
44
|
readonly notice: z.ZodOptional<z.ZodString>;
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31
45
|
}>;
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"get-compound-interactions.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/get-compound-interactions.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAIjD,eAAO,MAAM,uBAAuB
|
|
1
|
+
{"version":3,"file":"get-compound-interactions.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/get-compound-interactions.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAIjD,eAAO,MAAM,uBAAuB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EA+OlC,CAAC"}
|
|
@@ -7,7 +7,7 @@ import { getPubChemClient } from '../../../services/pubchem/pubchem-client.js';
|
|
|
7
7
|
import { inlineData, quoteData } from './untrusted-text.js';
|
|
8
8
|
export const getCompoundInteractions = tool('pubchem_get_compound_interactions', {
|
|
9
9
|
title: 'Get Compound Interactions',
|
|
10
|
-
description: "Get a compound's interaction data: drug-drug interactions (DrugBank), drug-food interactions, and chemical-target interactions (binding/activity from BindingDB, ChEMBL, and others). Each entry carries its originating source. Richest for approved drugs; many compounds have no deposited interaction records.",
|
|
10
|
+
description: "Get a compound's interaction data: drug-drug interactions (DrugBank), drug-food interactions, and chemical-target interactions (binding/activity from BindingDB, ChEMBL, and others). Each entry carries its originating source. Results are paged per kind, with the source-record total and the next offset reported for each. Richest for approved drugs; many compounds have no deposited interaction records.",
|
|
11
11
|
annotations: {
|
|
12
12
|
readOnlyHint: true,
|
|
13
13
|
idempotentHint: true,
|
|
@@ -24,13 +24,23 @@ export const getCompoundInteractions = tool('pubchem_get_compound_interactions',
|
|
|
24
24
|
.min(1)
|
|
25
25
|
.default(['drug-drug'])
|
|
26
26
|
.describe('Interaction kinds to fetch. "drug-drug" (interactions with other drugs), "drug-food" (dietary interactions), "target" (binding/activity against molecular targets). Default: ["drug-drug"].'),
|
|
27
|
+
offset: z
|
|
28
|
+
.number()
|
|
29
|
+
.int()
|
|
30
|
+
.min(0)
|
|
31
|
+
// PubChem's record cursor is a signed 32-bit integer; a larger start makes the upstream
|
|
32
|
+
// query fail outright, which would surface as a retryable kind failure that no retry can
|
|
33
|
+
// clear. Rejecting it here names the bound instead.
|
|
34
|
+
.max(2147483646)
|
|
35
|
+
.default(0)
|
|
36
|
+
.describe("Zero-based start position within each requested kind, counted in source records rather than returned entries. The same offset applies to every kind in the call, and the kinds advance at different rates — when paging past the first page, request one kind per call and pass that kind's nextOffset. Default: 0."),
|
|
27
37
|
maxEntries: z
|
|
28
38
|
.number()
|
|
29
39
|
.int()
|
|
30
40
|
.min(1)
|
|
31
41
|
.max(50)
|
|
32
42
|
.default(10)
|
|
33
|
-
.describe('Max entries per kind (1-50). Well-studied drugs have a long tail of interactions. Default: 10.'),
|
|
43
|
+
.describe('Max entries per kind per page (1-50). Well-studied drugs have a long tail of interactions; use offset to reach the ones past this page. Default: 10.'),
|
|
34
44
|
}),
|
|
35
45
|
output: z.object({
|
|
36
46
|
cid: z.number().describe('PubChem Compound ID.'),
|
|
@@ -47,12 +57,38 @@ export const getCompoundInteractions = tool('pubchem_get_compound_interactions',
|
|
|
47
57
|
})
|
|
48
58
|
.describe('A single interaction entry.'))
|
|
49
59
|
.describe('Interaction entries across the requested kinds.'),
|
|
60
|
+
paging: z
|
|
61
|
+
.array(z
|
|
62
|
+
.object({
|
|
63
|
+
kind: z
|
|
64
|
+
.enum(['drug-drug', 'drug-food', 'target'])
|
|
65
|
+
.describe('Interaction category this page covers.'),
|
|
66
|
+
returnedCount: z.number().describe('Interaction entries returned for this kind.'),
|
|
67
|
+
totalRecords: z
|
|
68
|
+
.number()
|
|
69
|
+
.describe('Source records available for this kind, across all pages. Entries are derived from these records and can be fewer: a "target" record naming no molecular target and a "drug-drug" record carrying no statement both yield nothing, and duplicate measurements collapse within a page. Pages divide the records, not the entries, so a duplicate split across two pages is reported on both.'),
|
|
70
|
+
nextOffset: z
|
|
71
|
+
.number()
|
|
72
|
+
.optional()
|
|
73
|
+
.describe('Offset to pass on the next call to continue this kind past the current page. Omitted when no records remain.'),
|
|
74
|
+
truncated: z
|
|
75
|
+
.boolean()
|
|
76
|
+
.describe('True when source records remain for this kind past the current page.'),
|
|
77
|
+
})
|
|
78
|
+
.describe('Page position for one interaction kind.'))
|
|
79
|
+
.describe('Per-kind page position, one entry per requested kind that was retrieved. A kind listed in failedKinds is absent — its position is unknown, not exhausted.'),
|
|
50
80
|
}),
|
|
51
|
-
// Agent-facing context — kind echo, total returned, failed kinds, and
|
|
52
|
-
// Reaches structuredContent and content[]; keys disjoint from
|
|
81
|
+
// Agent-facing context — kind echo, total returned, the page boundary, failed kinds, and
|
|
82
|
+
// an empty-result notice. Reaches structuredContent and content[]; keys disjoint from
|
|
83
|
+
// output (cid/entries/paging).
|
|
53
84
|
enrichment: {
|
|
54
85
|
requestedKinds: z.string().describe('Interaction kinds requested (comma-separated).'),
|
|
55
86
|
returnedCount: z.number().describe('Total interaction entries returned across all kinds.'),
|
|
87
|
+
offset: z.number().describe('Zero-based start position read within each requested kind.'),
|
|
88
|
+
nextOffset: z
|
|
89
|
+
.number()
|
|
90
|
+
.optional()
|
|
91
|
+
.describe('Offset to pass on the next call, reported when exactly one requested kind has records remaining. Omitted when none do, and when several do — those advance to different positions, so read paging[].nextOffset instead.'),
|
|
56
92
|
failedKinds: z
|
|
57
93
|
.string()
|
|
58
94
|
.optional()
|
|
@@ -60,11 +96,11 @@ export const getCompoundInteractions = tool('pubchem_get_compound_interactions',
|
|
|
60
96
|
notice: z
|
|
61
97
|
.string()
|
|
62
98
|
.optional()
|
|
63
|
-
.describe('Guidance when no interaction data was found
|
|
99
|
+
.describe('Guidance when a kind failed, when no interaction data was found, when the offset runs past every requested kind, or when further pages remain. Absent when this page is complete and every kind resolved.'),
|
|
64
100
|
},
|
|
65
101
|
async handler(input, ctx) {
|
|
66
102
|
const client = getPubChemClient();
|
|
67
|
-
const { entries, failedKinds } = await client.getInteractions(input.cid, input.kinds, input.maxEntries);
|
|
103
|
+
const { entries, pages, failedKinds } = await client.getInteractions(input.cid, input.kinds, input.maxEntries, input.offset);
|
|
68
104
|
for (const f of failedKinds) {
|
|
69
105
|
ctx.log.warning('Interaction kind failed', {
|
|
70
106
|
cid: input.cid,
|
|
@@ -75,25 +111,78 @@ export const getCompoundInteractions = tool('pubchem_get_compound_interactions',
|
|
|
75
111
|
ctx.log.info('Interactions fetched', {
|
|
76
112
|
cid: input.cid,
|
|
77
113
|
kinds: input.kinds,
|
|
114
|
+
offset: input.offset,
|
|
78
115
|
returned: entries.length,
|
|
79
116
|
failed: failedKinds.length,
|
|
80
117
|
});
|
|
81
|
-
|
|
118
|
+
// Each kind advances by the records it actually read, never by maxEntries — a kind that
|
|
119
|
+
// stopped early (or whose window ran short) would otherwise emit a next offset that skips
|
|
120
|
+
// records, and a cap-derived stride can also land off an integer boundary.
|
|
121
|
+
const paging = pages.map((p) => {
|
|
122
|
+
const next = input.offset + p.recordsConsumed;
|
|
123
|
+
const truncated = next < p.totalRecords;
|
|
124
|
+
return {
|
|
125
|
+
kind: p.kind,
|
|
126
|
+
returnedCount: p.returnedCount,
|
|
127
|
+
totalRecords: p.totalRecords,
|
|
128
|
+
truncated,
|
|
129
|
+
...(truncated ? { nextOffset: next } : {}),
|
|
130
|
+
};
|
|
131
|
+
});
|
|
132
|
+
ctx.enrich({
|
|
133
|
+
requestedKinds: input.kinds.join(', '),
|
|
134
|
+
returnedCount: entries.length,
|
|
135
|
+
offset: input.offset,
|
|
136
|
+
});
|
|
137
|
+
const remaining = paging.filter((p) => p.truncated);
|
|
138
|
+
// A single scalar nextOffset only means something when one kind is still going; with two
|
|
139
|
+
// it would have to pick one and silently skip the other's records.
|
|
140
|
+
const soleNextOffset = remaining.length === 1 ? remaining[0]?.nextOffset : undefined;
|
|
141
|
+
if (soleNextOffset !== undefined)
|
|
142
|
+
ctx.enrich({ nextOffset: soleNextOffset });
|
|
143
|
+
// Notice is last-wins, so every applicable signal composes into one string.
|
|
144
|
+
const noticeParts = [];
|
|
82
145
|
if (failedKinds.length > 0) {
|
|
83
146
|
const names = failedKinds.map((f) => f.kind).join(', ');
|
|
84
147
|
const plural = failedKinds.length > 1;
|
|
85
148
|
ctx.enrich({ failedKinds: names });
|
|
86
|
-
|
|
149
|
+
noticeParts.push(`Could not retrieve ${names} interaction${plural ? 's' : ''} for CID ${input.cid}.${entries.length > 0 ? ' Returned the kinds that succeeded.' : ''} Retry to re-attempt ${plural ? 'them' : 'it'}.`);
|
|
150
|
+
}
|
|
151
|
+
const largestTotal = paging.reduce((max, p) => Math.max(max, p.totalRecords), 0);
|
|
152
|
+
if (entries.length === 0 && paging.length > 0) {
|
|
153
|
+
if (largestTotal === 0) {
|
|
154
|
+
noticeParts.push(`No ${paging.map((p) => p.kind).join('/')} interaction data found for CID ${input.cid}. PubChem has no deposited interaction records for this compound — coverage is richest for approved drugs.`);
|
|
155
|
+
}
|
|
156
|
+
else if (input.offset >= largestTotal) {
|
|
157
|
+
noticeParts.push(`offset ${input.offset} is past every requested kind — the largest has ${largestTotal} record(s). Pass an offset below ${largestTotal}.`);
|
|
158
|
+
}
|
|
159
|
+
else {
|
|
160
|
+
noticeParts.push(`CID ${input.cid} has ${largestTotal} record(s) for the requested kind(s), but none read on this page carried a reportable interaction.`);
|
|
161
|
+
}
|
|
87
162
|
}
|
|
88
|
-
|
|
89
|
-
|
|
163
|
+
if (remaining.length > 0) {
|
|
164
|
+
noticeParts.push(`More records remain — ${remaining
|
|
165
|
+
.map((p) => `${p.kind}: pass offset=${p.nextOffset} of ${p.totalRecords} total`)
|
|
166
|
+
.join('; ')}.`);
|
|
90
167
|
}
|
|
91
|
-
|
|
168
|
+
if (noticeParts.length > 0)
|
|
169
|
+
ctx.enrich.notice(noticeParts.join(' '));
|
|
170
|
+
return { cid: input.cid, entries, paging };
|
|
92
171
|
},
|
|
93
172
|
format(result) {
|
|
94
173
|
const lines = [`## Interactions — CID ${result.cid}`, ''];
|
|
174
|
+
for (const p of result.paging) {
|
|
175
|
+
const summary = `${p.returnedCount} entr${p.returnedCount === 1 ? 'y' : 'ies'} from ${p.totalRecords} source record(s)`;
|
|
176
|
+
lines.push(`- **${p.kind}** — ${summary}${p.truncated ? ' — truncated' : ''}`);
|
|
177
|
+
if (p.nextOffset !== undefined)
|
|
178
|
+
lines.push(` Next offset: ${p.nextOffset}`);
|
|
179
|
+
}
|
|
180
|
+
if (result.paging.length > 0)
|
|
181
|
+
lines.push('');
|
|
95
182
|
if (result.entries.length === 0) {
|
|
96
|
-
|
|
183
|
+
// Neutral wording: an empty page is "no data", "offset past the end", or "the records
|
|
184
|
+
// read named no interaction" — the enrichment trailer's notice says which.
|
|
185
|
+
lines.push('No interaction entries returned.');
|
|
97
186
|
return [{ type: 'text', text: lines.join('\n') }];
|
|
98
187
|
}
|
|
99
188
|
for (const e of result.entries) {
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"get-compound-interactions.tool.js","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/get-compound-interactions.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAE,IAAI,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,sCAAsC,CAAC;AACxE,OAAO,EAAE,UAAU,EAAE,SAAS,EAAE,MAAM,qBAAqB,CAAC;AAE5D,MAAM,CAAC,MAAM,uBAAuB,GAAG,IAAI,CAAC,mCAAmC,EAAE;IAC/E,KAAK,EAAE,2BAA2B;IAClC,WAAW,EACT,
|
|
1
|
+
{"version":3,"file":"get-compound-interactions.tool.js","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/get-compound-interactions.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAE,IAAI,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,sCAAsC,CAAC;AACxE,OAAO,EAAE,UAAU,EAAE,SAAS,EAAE,MAAM,qBAAqB,CAAC;AAE5D,MAAM,CAAC,MAAM,uBAAuB,GAAG,IAAI,CAAC,mCAAmC,EAAE;IAC/E,KAAK,EAAE,2BAA2B;IAClC,WAAW,EACT,oZAAoZ;IACtZ,WAAW,EAAE;QACX,YAAY,EAAE,IAAI;QAClB,cAAc,EAAE,IAAI;QACpB,aAAa,EAAE,IAAI;KACpB;IACD,KAAK,EAAE,CAAC,CAAC,MAAM,CAAC;QACd,GAAG,EAAE,CAAC;aACH,MAAM,EAAE;aACR,GAAG,EAAE;aACL,QAAQ,EAAE;aACV,QAAQ,CAAC,8EAA8E,CAAC;QAC3F,KAAK,EAAE,CAAC;aACL,KAAK,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,WAAW,EAAE,WAAW,EAAE,QAAQ,CAAC,CAAC,CAAC;aACnD,GAAG,CAAC,CAAC,CAAC;aACN,OAAO,CAAC,CAAC,WAAW,CAAC,CAAC;aACtB,QAAQ,CACP,6LAA6L,CAC9L;QACH,MAAM,EAAE,CAAC;aACN,MAAM,EAAE;aACR,GAAG,EAAE;aACL,GAAG,CAAC,CAAC,CAAC;YACP,wFAAwF;YACxF,yFAAyF;YACzF,oDAAoD;aACnD,GAAG,CAAC,UAAU,CAAC;aACf,OAAO,CAAC,CAAC,CAAC;aACV,QAAQ,CACP,qTAAqT,CACtT;QACH,UAAU,EAAE,CAAC;aACV,MAAM,EAAE;aACR,GAAG,EAAE;aACL,GAAG,CAAC,CAAC,CAAC;aACN,GAAG,CAAC,EAAE,CAAC;aACP,OAAO,CAAC,EAAE,CAAC;aACX,QAAQ,CACP,sJAAsJ,CACvJ;KACJ,CAAC;IACF,MAAM,EAAE,CAAC,CAAC,MAAM,CAAC;QACf,GAAG,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,sBAAsB,CAAC;QAChD,OAAO,EAAE,CAAC;aACP,KAAK,CACJ,CAAC;aACE,MAAM,CAAC;YACN,IAAI,EAAE,CAAC,CAAC,IAAI,CAAC,CAAC,WAAW,EAAE,WAAW,EAAE,QAAQ,CAAC,CAAC,CAAC,QAAQ,CAAC,uBAAuB,CAAC;YACpF,OAAO,EAAE,CAAC;iBACP,MAAM,EAAE;iBACR,QAAQ,EAAE;iBACV,QAAQ,CAAC,sEAAsE,CAAC;YACnF,MAAM,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,oDAAoD,CAAC;YACjF,IAAI,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,4BAA4B,CAAC;SACxD,CAAC;aACD,QAAQ,CAAC,6BAA6B,CAAC,CAC3C;aACA,QAAQ,CAAC,iDAAiD,CAAC;QAC9D,MAAM,EAAE,CAAC;aACN,KAAK,CACJ,CAAC;aACE,MAAM,CAAC;YACN,IAAI,EAAE,CAAC;iBACJ,IAAI,CAAC,CAAC,WAAW,EAAE,WAAW,EAAE,QAAQ,CAAC,CAAC;iBAC1C,QAAQ,CAAC,wCAAwC,CAAC;YACrD,aAAa,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,6CAA6C,CAAC;YACjF,YAAY,EAAE,CAAC;iBACZ,MAAM,EAAE;iBACR,QAAQ,CACP,6XAA6X,CAC9X;YACH,UAAU,EAAE,CAAC;iBACV,MAAM,EAAE;iBACR,QAAQ,EAAE;iBACV,QAAQ,CACP,8GAA8G,CAC/G;YACH,SAAS,EAAE,CAAC;iBACT,OAAO,EAAE;iBACT,QAAQ,CAAC,sEAAsE,CAAC;SACpF,CAAC;aACD,QAAQ,CAAC,yCAAyC,CAAC,CACvD;aACA,QAAQ,CACP,2JAA2J,CAC5J;KACJ,CAAC;IACF,yFAAyF;IACzF,sFAAsF;IACtF,+BAA+B;IAC/B,UAAU,EAAE;QACV,cAAc,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,gDAAgD,CAAC;QACrF,aAAa,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,sDAAsD,CAAC;QAC1F,MAAM,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,4DAA4D,CAAC;QACzF,UAAU,EAAE,CAAC;aACV,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,CACP,yNAAyN,CAC1N;QACH,WAAW,EAAE,CAAC;aACX,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,CACP,4JAA4J,CAC7J;QACH,MAAM,EAAE,CAAC;aACN,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,CACP,2MAA2M,CAC5M;KACJ;IAED,KAAK,CAAC,OAAO,CAAC,KAAK,EAAE,GAAG;QACtB,MAAM,MAAM,GAAG,gBAAgB,EAAE,CAAC;QAClC,MAAM,EAAE,OAAO,EAAE,KAAK,EAAE,WAAW,EAAE,GAAG,MAAM,MAAM,CAAC,eAAe,CAClE,KAAK,CAAC,GAAG,EACT,KAAK,CAAC,KAAK,EACX,KAAK,CAAC,UAAU,EAChB,KAAK,CAAC,MAAM,CACb,CAAC;QAEF,KAAK,MAAM,CAAC,IAAI,WAAW,EAAE,CAAC;YAC5B,GAAG,CAAC,GAAG,CAAC,OAAO,CAAC,yBAAyB,EAAE;gBACzC,GAAG,EAAE,KAAK,CAAC,GAAG;gBACd,IAAI,EAAE,CAAC,CAAC,IAAI;gBACZ,KAAK,EAAE,CAAC,CAAC,OAAO;aACjB,CAAC,CAAC;QACL,CAAC;QACD,GAAG,CAAC,GAAG,CAAC,IAAI,CAAC,sBAAsB,EAAE;YACnC,GAAG,EAAE,KAAK,CAAC,GAAG;YACd,KAAK,EAAE,KAAK,CAAC,KAAK;YAClB,MAAM,EAAE,KAAK,CAAC,MAAM;YACpB,QAAQ,EAAE,OAAO,CAAC,MAAM;YACxB,MAAM,EAAE,WAAW,CAAC,MAAM;SAC3B,CAAC,CAAC;QAEH,wFAAwF;QACxF,0FAA0F;QAC1F,2EAA2E;QAC3E,MAAM,MAAM,GAAG,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE;YAC7B,MAAM,IAAI,GAAG,KAAK,CAAC,MAAM,GAAG,CAAC,CAAC,eAAe,CAAC;YAC9C,MAAM,SAAS,GAAG,IAAI,GAAG,CAAC,CAAC,YAAY,CAAC;YACxC,OAAO;gBACL,IAAI,EAAE,CAAC,CAAC,IAAI;gBACZ,aAAa,EAAE,CAAC,CAAC,aAAa;gBAC9B,YAAY,EAAE,CAAC,CAAC,YAAY;gBAC5B,SAAS;gBACT,GAAG,CAAC,SAAS,CAAC,CAAC,CAAC,EAAE,UAAU,EAAE,IAAI,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;aAC3C,CAAC;QACJ,CAAC,CAAC,CAAC;QAEH,GAAG,CAAC,MAAM,CAAC;YACT,cAAc,EAAE,KAAK,CAAC,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC;YACtC,aAAa,EAAE,OAAO,CAAC,MAAM;YAC7B,MAAM,EAAE,KAAK,CAAC,MAAM;SACrB,CAAC,CAAC;QAEH,MAAM,SAAS,GAAG,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC;QACpD,yFAAyF;QACzF,mEAAmE;QACnE,MAAM,cAAc,GAAG,SAAS,CAAC,MAAM,KAAK,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,EAAE,UAAU,CAAC,CAAC,CAAC,SAAS,CAAC;QACrF,IAAI,cAAc,KAAK,SAAS;YAAE,GAAG,CAAC,MAAM,CAAC,EAAE,UAAU,EAAE,cAAc,EAAE,CAAC,CAAC;QAE7E,4EAA4E;QAC5E,MAAM,WAAW,GAAa,EAAE,CAAC;QAEjC,IAAI,WAAW,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;YAC3B,MAAM,KAAK,GAAG,WAAW,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;YACxD,MAAM,MAAM,GAAG,WAAW,CAAC,MAAM,GAAG,CAAC,CAAC;YACtC,GAAG,CAAC,MAAM,CAAC,EAAE,WAAW,EAAE,KAAK,EAAE,CAAC,CAAC;YACnC,WAAW,CAAC,IAAI,CACd,sBAAsB,KAAK,eAAe,MAAM,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,YAAY,KAAK,CAAC,GAAG,IAC9E,OAAO,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,qCAAqC,CAAC,CAAC,CAAC,EAC/D,wBAAwB,MAAM,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,IAAI,GAAG,CAClD,CAAC;QACJ,CAAC;QAED,MAAM,YAAY,GAAG,MAAM,CAAC,MAAM,CAAC,CAAC,GAAG,EAAE,CAAC,EAAE,EAAE,CAAC,IAAI,CAAC,GAAG,CAAC,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@@ -1 +1 @@
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1
|
-
{"version":3,"file":"get-compound-xrefs.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/get-compound-xrefs.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAMjD,eAAO,MAAM,gBAAgB;;;;;;;;;;;;;;;;;;;
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1
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+
{"version":3,"file":"get-compound-xrefs.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/get-compound-xrefs.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAMjD,eAAO,MAAM,gBAAgB;;;;;;;;;;;;;;;;;;;EAyL3B,CAAC"}
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@@ -32,6 +32,7 @@ export const getCompoundXrefs = tool('pubchem_get_compound_xrefs', {
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32
32
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.describe('Zero-based index of the first ID to return within each xref type. The same offset is applied to every requested type. Pass the nextOffset from a previous call to read the following page. Default: 0.'),
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33
33
|
maxPerType: z
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34
34
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.number()
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35
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+
.int()
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35
36
|
.min(1)
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36
37
|
.max(500)
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37
38
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.default(50)
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@@ -1 +1 @@
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1
|
-
{"version":3,"file":"get-compound-xrefs.tool.js","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/get-compound-xrefs.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAE,IAAI,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,sCAAsC,CAAC;AACxE,OAAO,EAAE,UAAU,EAAE,MAAM,6BAA6B,CAAC;AAEzD,MAAM,YAAY,GAAG,CAAC,CAAC,IAAI,CAAC,UAA8C,CAAC,CAAC;AAE5E,MAAM,CAAC,MAAM,gBAAgB,GAAG,IAAI,CAAC,4BAA4B,EAAE;IACjE,KAAK,EAAE,+BAA+B;IACtC,WAAW,EACT,6QAA6Q;IAC/Q,WAAW,EAAE;QACX,YAAY,EAAE,IAAI;QAClB,cAAc,EAAE,IAAI;QACpB,aAAa,EAAE,IAAI;KACpB;IACD,KAAK,EAAE,CAAC,CAAC,MAAM,CAAC;QACd,GAAG,EAAE,CAAC;aACH,MAAM,EAAE;aACR,GAAG,EAAE;aACL,QAAQ,EAAE;aACV,QAAQ,CAAC,8EAA8E,CAAC;QAC3F,SAAS,EAAE,CAAC;aACT,KAAK,CAAC,YAAY,CAAC;aACnB,GAAG,CAAC,CAAC,CAAC;aACN,QAAQ,CACP,iNAAiN,CAClN;QACH,MAAM,EAAE,CAAC;aACN,MAAM,EAAE;aACR,GAAG,EAAE;aACL,GAAG,CAAC,CAAC,CAAC;aACN,OAAO,CAAC,CAAC,CAAC;aACV,QAAQ,CACP,wMAAwM,CACzM;QACH,UAAU,EAAE,CAAC;aACV,MAAM,EAAE;aACR,GAAG,CAAC,CAAC,CAAC;aACN,GAAG,CAAC,GAAG,CAAC;aACR,OAAO,CAAC,EAAE,CAAC;aACX,QAAQ,CACP,8LAA8L,CAC/L;KACJ,CAAC;IACF,MAAM,EAAE,CAAC,CAAC,MAAM,CAAC;QACf,GAAG,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,sBAAsB,CAAC;QAChD,KAAK,EAAE,CAAC;aACL,KAAK,CACJ,CAAC;aACE,MAAM,CAAC;YACN,IAAI,EAAE,CAAC;iBACJ,MAAM,EAAE;iBACR,QAAQ,CACP,6FAA6F,CAC9F;YACH,GAAG,EAAE,CAAC;iBACH,KAAK,CACJ,CAAC;iBACE,KAAK,CAAC;gBACL,CAAC;qBACE,MAAM,EAAE;qBACR,QAAQ,CAAC,2DAA2D,CAAC;gBACxE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,uDAAuD,CAAC;aAC7E,CAAC;iBACD,QAAQ,CAAC,kEAAkE,CAAC,CAChF;iBACA,QAAQ,CAAC,mEAAmE,CAAC;YAChF,cAAc,EAAE,CAAC;iBACd,MAAM,EAAE;iBACR,QAAQ,CAAC,sDAAsD,CAAC;YACnE,SAAS,EAAE,CAAC;iBACT,OAAO,EAAE;iBACT,QAAQ,CAAC,2DAA2D,CAAC;SACzE,CAAC;aACD,QAAQ,CAAC,qCAAqC,CAAC,CACnD;aACA,QAAQ,CAAC,mCAAmC,CAAC;KACjD,CAAC;IACF,yFAAyF;IACzF,oFAAoF;IACpF,2FAA2F;IAC3F,0BAA0B;IAC1B,UAAU,EAAE;QACV,MAAM,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,6DAA6D,CAAC;QAC1F,UAAU,EAAE,CAAC;aACV,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,CACP,6GAA6G,CAC9G;QACH,MAAM,EAAE,CAAC;aACN,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,CACP,0LAA0L,CAC3L;KACJ;IAED,KAAK,CAAC,OAAO,CAAC,KAAK,EAAE,GAAG;QACtB,MAAM,MAAM,GAAG,gBAAgB,EAAE,CAAC;QAElC,iDAAiD;QACjD,MAAM,KAAK,GAKN,EAAE,CAAC;QAER,KAAK,MAAM,QAAQ,IAAI,KAAK,CAAC,SAAS,EAAE,CAAC;YACvC,MAAM,MAAM,GAAG,MAAM,MAAM,CAAC,QAAQ,CAAC,KAAK,CAAC,GAAG,EAAE,QAAQ,CAAC,CAAC;YAC1D,MAAM,cAAc,GAAG,MAAM,CAAC,MAAM,CAAC;YACrC,sFAAsF;YACtF,4DAA4D;YAC5D,MAAM,GAAG,GAAG,MAAM,CAAC,KAAK,CAAC,KAAK,CAAC,MAAM,EAAE,KAAK,CAAC,MAAM,GAAG,KAAK,CAAC,UAAU,CAAC,CAAC;YAExE,KAAK,CAAC,IAAI,CAAC;gBACT,IAAI,EAAE,QAAQ;gBACd,GAAG;gBACH,cAAc;gBACd,SAAS,EAAE,KAAK,CAAC,MAAM,GAAG,GAAG,CAAC,MAAM,GAAG,cAAc;aACtD,CAAC,CAAC;QACL,CAAC;QAED,GAAG,CAAC,GAAG,CAAC,IAAI,CAAC,eAAe,EAAE;YAC5B,GAAG,EAAE,KAAK,CAAC,GAAG;YACd,KAAK,EAAE,KAAK,CAAC,SAAS;YACtB,MAAM,EAAE,KAAK,CAAC,MAAM;YACpB,QAAQ,EAAE,KAAK,CAAC,MAAM,CAAC,CAAC,GAAG,EAAE,CAAC,EAAE,EAAE,CAAC,GAAG,GAAG,CAAC,CAAC,GAAG,CAAC,MAAM,EAAE,CAAC,CAAC;SAC1D,CAAC,CAAC;QAEH,2FAA2F;QAC3F,4FAA4F;QAC5F,yFAAyF;QACzF,0EAA0E;QAC1E,MAAM,cAAc,GAAG,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC;QACxD,MAAM,OAAO,GAAG,cAAc,CAAC,MAAM,GAAG,CAAC,CAAC;QAC1C,MAAM,UAAU,GAAG,KAAK,CAAC,MAAM,GAAG,CAAC,cAAc,CAAC,CAAC,CAAC,EAAE,GAAG,CAAC,MAAM,IAAI,CAAC,CAAC,CAAC;QACvE,MAAM,YAAY,GAAG,IAAI,CAAC,GAAG,CAAC,GAAG,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,cAAc,CAAC,CAAC,CAAC;QAErE,GAAG,CAAC,MAAM,CAAC,EAAE,MAAM,EAAE,KAAK,CAAC,MAAM,EAAE,CAAC,CAAC;QACrC,IAAI,OAAO;YAAE,GAAG,CAAC,MAAM,CAAC,EAAE,UAAU,EAAE,CAAC,CAAC;QAExC,mFAAmF;QACnF,yFAAyF;QACzF,IAAI,YAAY,KAAK,CAAC,EAAE,CAAC;YACvB,GAAG,CAAC,MAAM,CAAC,MAAM,CACf,qCAAqC,KAAK,CAAC,GAAG,kCAAkC,KAAK,CAAC,SAAS,CAAC,IAAI,CAAC,IAAI,CAAC,oGAAoG,CAC/M,CAAC;QACJ,CAAC;aAAM,IAAI,KAAK,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC,MAAM,KAAK,CAAC,CAAC,EAAE,CAAC;YAClD,GAAG,CAAC,MAAM,CAAC,MAAM,CACf,UAAU,KAAK,CAAC,MAAM,mDAAmD,YAAY,gCAAgC,YAAY,GAAG,CACrI,CAAC;QACJ,CAAC;aAAM,IAAI,OAAO,EAAE,CAAC;YACnB,MAAM,SAAS,GAAG,cAAc;iBAC7B,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,GAAG,CAAC,CAAC,IAAI,KAAK,CAAC,CAAC,cAAc,SAAS,CAAC;iBACnD,IAAI,CAAC,IAAI,CAAC,CAAC;YACd,GAAG,CAAC,MAAM,CAAC,MAAM,CACf,wBAAwB,SAAS,iBAAiB,UAAU,qBAAqB,CAClF,CAAC;QACJ,CAAC;QAED,OAAO,EAAE,GAAG,EAAE,KAAK,CAAC,GAAG,EAAE,KAAK,EAAE,CAAC;IACnC,CAAC;IAED,MAAM,CAAC,MAAM;QACX,MAAM,KAAK,GAAa,CAAC,4BAA4B,MAAM,CAAC,GAAG,EAAE,EAAE,EAAE,CAAC,CAAC;QAEvE,KAAK,MAAM,IAAI,IAAI,MAAM,CAAC,KAAK,EAAE,CAAC;YAChC,mFAAmF;YACnF,6EAA6E;YAC7E,IAAI,SAAS,GAAG,GAAG,IAAI,CAAC,cAAc,QAAQ,CAAC;YAC/C,IAAI,IAAI,CAAC,GAAG,CAAC,MAAM,KAAK,IAAI,CAAC,cAAc,EAAE,CAAC;gBAC5C,SAAS,GAAG,GAAG,IAAI,CAAC,GAAG,CAAC,MAAM,OAAO,IAAI,CAAC,cAAc,QAAQ,CAAC;gBACjE,IAAI,IAAI,CAAC,SAAS;oBAAE,SAAS,IAAI,cAAc,CAAC;YAClD,CAAC;YACD,KAAK,CAAC,IAAI,CAAC,KAAK,IAAI,CAAC,IAAI,OAAO,SAAS,GAAG,CAAC,CAAC;YAE9C,IAAI,IAAI,CAAC,GAAG,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;gBACxB,gFAAgF;gBAChF,wFAAwF;gBACxF,KAAK,CAAC,IAAI,CAAC,KAAK,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;YACzC,CAAC;iBAAM,CAAC;gBACN,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,cAAc,GAAG,CAAC,CAAC,CAAC,CAAC,qBAAqB,CAAC,CAAC,CAAC,cAAc,CAAC,CAAC;YAC/E,CAAC;YACD,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACjB,CAAC;QAED,OAAO,CAAC,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IACpD,CAAC;CACF,CAAC,CAAC"}
|
|
1
|
+
{"version":3,"file":"get-compound-xrefs.tool.js","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/get-compound-xrefs.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAE,IAAI,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,sCAAsC,CAAC;AACxE,OAAO,EAAE,UAAU,EAAE,MAAM,6BAA6B,CAAC;AAEzD,MAAM,YAAY,GAAG,CAAC,CAAC,IAAI,CAAC,UAA8C,CAAC,CAAC;AAE5E,MAAM,CAAC,MAAM,gBAAgB,GAAG,IAAI,CAAC,4BAA4B,EAAE;IACjE,KAAK,EAAE,+BAA+B;IACtC,WAAW,EACT,6QAA6Q;IAC/Q,WAAW,EAAE;QACX,YAAY,EAAE,IAAI;QAClB,cAAc,EAAE,IAAI;QACpB,aAAa,EAAE,IAAI;KACpB;IACD,KAAK,EAAE,CAAC,CAAC,MAAM,CAAC;QACd,GAAG,EAAE,CAAC;aACH,MAAM,EAAE;aACR,GAAG,EAAE;aACL,QAAQ,EAAE;aACV,QAAQ,CAAC,8EAA8E,CAAC;QAC3F,SAAS,EAAE,CAAC;aACT,KAAK,CAAC,YAAY,CAAC;aACnB,GAAG,CAAC,CAAC,CAAC;aACN,QAAQ,CACP,iNAAiN,CAClN;QACH,MAAM,EAAE,CAAC;aACN,MAAM,EAAE;aACR,GAAG,EAAE;aACL,GAAG,CAAC,CAAC,CAAC;aACN,OAAO,CAAC,CAAC,CAAC;aACV,QAAQ,CACP,wMAAwM,CACzM;QACH,UAAU,EAAE,CAAC;aACV,MAAM,EAAE;aACR,GAAG,EAAE;aACL,GAAG,CAAC,CAAC,CAAC;aACN,GAAG,CAAC,GAAG,CAAC;aACR,OAAO,CAAC,EAAE,CAAC;aACX,QAAQ,CACP,8LAA8L,CAC/L;KACJ,CAAC;IACF,MAAM,EAAE,CAAC,CAAC,MAAM,CAAC;QACf,GAAG,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,sBAAsB,CAAC;QAChD,KAAK,EAAE,CAAC;aACL,KAAK,CACJ,CAAC;aACE,MAAM,CAAC;YACN,IAAI,EAAE,CAAC;iBACJ,MAAM,EAAE;iBACR,QAAQ,CACP,6FAA6F,CAC9F;YACH,GAAG,EAAE,CAAC;iBACH,KAAK,CACJ,CAAC;iBACE,KAAK,CAAC;gBACL,CAAC;qBACE,MAAM,EAAE;qBACR,QAAQ,CAAC,2DAA2D,CAAC;gBACxE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,uDAAuD,CAAC;aAC7E,CAAC;iBACD,QAAQ,CAAC,kEAAkE,CAAC,CAChF;iBACA,QAAQ,CAAC,mEAAmE,CAAC;YAChF,cAAc,EAAE,CAAC;iBACd,MAAM,EAAE;iBACR,QAAQ,CAAC,sDAAsD,CAAC;YACnE,SAAS,EAAE,CAAC;iBACT,OAAO,EAAE;iBACT,QAAQ,CAAC,2DAA2D,CAAC;SACzE,CAAC;aACD,QAAQ,CAAC,qCAAqC,CAAC,CACnD;aACA,QAAQ,CAAC,mCAAmC,CAAC;KACjD,CAAC;IACF,yFAAyF;IACzF,oFAAoF;IACpF,2FAA2F;IAC3F,0BAA0B;IAC1B,UAAU,EAAE;QACV,MAAM,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,6DAA6D,CAAC;QAC1F,UAAU,EAAE,CAAC;aACV,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,CACP,6GAA6G,CAC9G;QACH,MAAM,EAAE,CAAC;aACN,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,CACP,0LAA0L,CAC3L;KACJ;IAED,KAAK,CAAC,OAAO,CAAC,KAAK,EAAE,GAAG;QACtB,MAAM,MAAM,GAAG,gBAAgB,EAAE,CAAC;QAElC,iDAAiD;QACjD,MAAM,KAAK,GAKN,EAAE,CAAC;QAER,KAAK,MAAM,QAAQ,IAAI,KAAK,CAAC,SAAS,EAAE,CAAC;YACvC,MAAM,MAAM,GAAG,MAAM,MAAM,CAAC,QAAQ,CAAC,KAAK,CAAC,GAAG,EAAE,QAAQ,CAAC,CAAC;YAC1D,MAAM,cAAc,GAAG,MAAM,CAAC,MAAM,CAAC;YACrC,sFAAsF;YACtF,4DAA4D;YAC5D,MAAM,GAAG,GAAG,MAAM,CAAC,KAAK,CAAC,KAAK,CAAC,MAAM,EAAE,KAAK,CAAC,MAAM,GAAG,KAAK,CAAC,UAAU,CAAC,CAAC;YAExE,KAAK,CAAC,IAAI,CAAC;gBACT,IAAI,EAAE,QAAQ;gBACd,GAAG;gBACH,cAAc;gBACd,SAAS,EAAE,KAAK,CAAC,MAAM,GAAG,GAAG,CAAC,MAAM,GAAG,cAAc;aACtD,CAAC,CAAC;QACL,CAAC;QAED,GAAG,CAAC,GAAG,CAAC,IAAI,CAAC,eAAe,EAAE;YAC5B,GAAG,EAAE,KAAK,CAAC,GAAG;YACd,KAAK,EAAE,KAAK,CAAC,SAAS;YACtB,MAAM,EAAE,KAAK,CAAC,MAAM;YACpB,QAAQ,EAAE,KAAK,CAAC,MAAM,CAAC,CAAC,GAAG,EAAE,CAAC,EAAE,EAAE,CAAC,GAAG,GAAG,CAAC,CAAC,GAAG,CAAC,MAAM,EAAE,CAAC,CAAC;SAC1D,CAAC,CAAC;QAEH,2FAA2F;QAC3F,4FAA4F;QAC5F,yFAAyF;QACzF,0EAA0E;QAC1E,MAAM,cAAc,GAAG,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC;QACxD,MAAM,OAAO,GAAG,cAAc,CAAC,MAAM,GAAG,CAAC,CAAC;QAC1C,MAAM,UAAU,GAAG,KAAK,CAAC,MAAM,GAAG,CAAC,cAAc,CAAC,CAAC,CAAC,EAAE,GAAG,CAAC,MAAM,IAAI,CAAC,CAAC,CAAC;QACvE,MAAM,YAAY,GAAG,IAAI,CAAC,GAAG,CAAC,GAAG,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,cAAc,CAAC,CAAC,CAAC;QAErE,GAAG,CAAC,MAAM,CAAC,EAAE,MAAM,EAAE,KAAK,CAAC,MAAM,EAAE,CAAC,CAAC;QACrC,IAAI,OAAO;YAAE,GAAG,CAAC,MAAM,CAAC,EAAE,UAAU,EAAE,CAAC,CAAC;QAExC,mFAAmF;QACnF,yFAAyF;QACzF,IAAI,YAAY,KAAK,CAAC,EAAE,CAAC;YACvB,GAAG,CAAC,MAAM,CAAC,MAAM,CACf,qCAAqC,KAAK,CAAC,GAAG,kCAAkC,KAAK,CAAC,SAAS,CAAC,IAAI,CAAC,IAAI,CAAC,oGAAoG,CAC/M,CAAC;QACJ,CAAC;aAAM,IAAI,KAAK,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC,MAAM,KAAK,CAAC,CAAC,EAAE,CAAC;YAClD,GAAG,CAAC,MAAM,CAAC,MAAM,CACf,UAAU,KAAK,CAAC,MAAM,mDAAmD,YAAY,gCAAgC,YAAY,GAAG,CACrI,CAAC;QACJ,CAAC;aAAM,IAAI,OAAO,EAAE,CAAC;YACnB,MAAM,SAAS,GAAG,cAAc;iBAC7B,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,GAAG,CAAC,CAAC,IAAI,KAAK,CAAC,CAAC,cAAc,SAAS,CAAC;iBACnD,IAAI,CAAC,IAAI,CAAC,CAAC;YACd,GAAG,CAAC,MAAM,CAAC,MAAM,CACf,wBAAwB,SAAS,iBAAiB,UAAU,qBAAqB,CAClF,CAAC;QACJ,CAAC;QAED,OAAO,EAAE,GAAG,EAAE,KAAK,CAAC,GAAG,EAAE,KAAK,EAAE,CAAC;IACnC,CAAC;IAED,MAAM,CAAC,MAAM;QACX,MAAM,KAAK,GAAa,CAAC,4BAA4B,MAAM,CAAC,GAAG,EAAE,EAAE,EAAE,CAAC,CAAC;QAEvE,KAAK,MAAM,IAAI,IAAI,MAAM,CAAC,KAAK,EAAE,CAAC;YAChC,mFAAmF;YACnF,6EAA6E;YAC7E,IAAI,SAAS,GAAG,GAAG,IAAI,CAAC,cAAc,QAAQ,CAAC;YAC/C,IAAI,IAAI,CAAC,GAAG,CAAC,MAAM,KAAK,IAAI,CAAC,cAAc,EAAE,CAAC;gBAC5C,SAAS,GAAG,GAAG,IAAI,CAAC,GAAG,CAAC,MAAM,OAAO,IAAI,CAAC,cAAc,QAAQ,CAAC;gBACjE,IAAI,IAAI,CAAC,SAAS;oBAAE,SAAS,IAAI,cAAc,CAAC;YAClD,CAAC;YACD,KAAK,CAAC,IAAI,CAAC,KAAK,IAAI,CAAC,IAAI,OAAO,SAAS,GAAG,CAAC,CAAC;YAE9C,IAAI,IAAI,CAAC,GAAG,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;gBACxB,gFAAgF;gBAChF,wFAAwF;gBACxF,KAAK,CAAC,IAAI,CAAC,KAAK,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;YACzC,CAAC;iBAAM,CAAC;gBACN,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,cAAc,GAAG,CAAC,CAAC,CAAC,CAAC,qBAAqB,CAAC,CAAC,CAAC,cAAc,CAAC,CAAC;YAC/E,CAAC;YACD,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QACjB,CAAC;QAED,OAAO,CAAC,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IACpD,CAAC;CACF,CAAC,CAAC"}
|
|
@@ -125,6 +125,7 @@ export declare const allToolDefinitions: (import("@cyanheads/mcp-ts-core").ToolD
|
|
|
125
125
|
smiles: "smiles";
|
|
126
126
|
}>>;
|
|
127
127
|
threshold: import("zod").ZodDefault<import("zod").ZodNumber>;
|
|
128
|
+
offset: import("zod").ZodDefault<import("zod").ZodNumber>;
|
|
128
129
|
maxResults: import("zod").ZodDefault<import("zod").ZodNumber>;
|
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129
130
|
properties: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodEnum<{
|
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130
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|
[x: string]: string;
|
|
@@ -160,6 +161,8 @@ export declare const allToolDefinitions: (import("@cyanheads/mcp-ts-core").ToolD
|
|
|
160
161
|
readonly searchType: import("zod").ZodString;
|
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161
162
|
readonly totalFound: import("zod").ZodOptional<import("zod").ZodNumber>;
|
|
162
163
|
readonly totalFoundAtLeast: import("zod").ZodOptional<import("zod").ZodNumber>;
|
|
164
|
+
readonly offset: import("zod").ZodNumber;
|
|
165
|
+
readonly nextOffset: import("zod").ZodOptional<import("zod").ZodNumber>;
|
|
163
166
|
readonly truncated: import("zod").ZodOptional<import("zod").ZodBoolean>;
|
|
164
167
|
readonly shown: import("zod").ZodOptional<import("zod").ZodNumber>;
|
|
165
168
|
readonly cap: import("zod").ZodOptional<import("zod").ZodNumber>;
|
|
@@ -298,6 +301,7 @@ export declare const allToolDefinitions: (import("@cyanheads/mcp-ts-core").ToolD
|
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|
298
301
|
"drug-food": "drug-food";
|
|
299
302
|
target: "target";
|
|
300
303
|
}>>>;
|
|
304
|
+
offset: import("zod").ZodDefault<import("zod").ZodNumber>;
|
|
301
305
|
maxEntries: import("zod").ZodDefault<import("zod").ZodNumber>;
|
|
302
306
|
}, import("zod/v4/core").$strip>, import("zod").ZodObject<{
|
|
303
307
|
cid: import("zod").ZodNumber;
|
|
@@ -311,9 +315,22 @@ export declare const allToolDefinitions: (import("@cyanheads/mcp-ts-core").ToolD
|
|
|
311
315
|
source: import("zod").ZodString;
|
|
312
316
|
text: import("zod").ZodString;
|
|
313
317
|
}, import("zod/v4/core").$strip>>;
|
|
318
|
+
paging: import("zod").ZodArray<import("zod").ZodObject<{
|
|
319
|
+
kind: import("zod").ZodEnum<{
|
|
320
|
+
"drug-drug": "drug-drug";
|
|
321
|
+
"drug-food": "drug-food";
|
|
322
|
+
target: "target";
|
|
323
|
+
}>;
|
|
324
|
+
returnedCount: import("zod").ZodNumber;
|
|
325
|
+
totalRecords: import("zod").ZodNumber;
|
|
326
|
+
nextOffset: import("zod").ZodOptional<import("zod").ZodNumber>;
|
|
327
|
+
truncated: import("zod").ZodBoolean;
|
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328
|
+
}, import("zod/v4/core").$strip>>;
|
|
314
329
|
}, import("zod/v4/core").$strip>, undefined, {
|
|
315
330
|
readonly requestedKinds: import("zod").ZodString;
|
|
316
331
|
readonly returnedCount: import("zod").ZodNumber;
|
|
332
|
+
readonly offset: import("zod").ZodNumber;
|
|
333
|
+
readonly nextOffset: import("zod").ZodOptional<import("zod").ZodNumber>;
|
|
317
334
|
readonly failedKinds: import("zod").ZodOptional<import("zod").ZodString>;
|
|
318
335
|
readonly notice: import("zod").ZodOptional<import("zod").ZodString>;
|
|
319
336
|
}> | import("@cyanheads/mcp-ts-core").ToolDefinition<import("zod").ZodObject<{
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/index.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAaH,eAAO,MAAM,kBAAkB
|
|
1
|
+
{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/index.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAaH,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;KAW9B,CAAC"}
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"search-assays.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/search-assays.tool.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAGjE,eAAO,MAAM,YAAY;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
|
|
1
|
+
{"version":3,"file":"search-assays.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/search-assays.tool.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAGjE,eAAO,MAAM,YAAY;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EAyJvB,CAAC"}
|
|
@@ -29,6 +29,7 @@ export const searchAssays = tool('pubchem_search_assays', {
|
|
|
29
29
|
.describe('Zero-based index of the first AID to return. Pass the nextOffset from a previous call to read the following page. Default: 0.'),
|
|
30
30
|
maxResults: z
|
|
31
31
|
.number()
|
|
32
|
+
.int()
|
|
32
33
|
.min(1)
|
|
33
34
|
.max(200)
|
|
34
35
|
.default(50)
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"search-assays.tool.js","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/search-assays.tool.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAE,IAAI,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AACjE,OAAO,EAAE,gBAAgB,EAAE,MAAM,sCAAsC,CAAC;AAExE,MAAM,CAAC,MAAM,YAAY,GAAG,IAAI,CAAC,uBAAuB,EAAE;IACxD,KAAK,EAAE,eAAe;IACtB,WAAW,EACT,oRAAoR;IACtR,WAAW,EAAE;QACX,YAAY,EAAE,IAAI;QAClB,cAAc,EAAE,IAAI;QACpB,aAAa,EAAE,IAAI;KACpB;IACD,KAAK,EAAE,CAAC,CAAC,MAAM,CAAC;QACd,UAAU,EAAE,CAAC;aACV,IAAI,CAAC,CAAC,YAAY,EAAE,aAAa,EAAE,QAAQ,EAAE,kBAAkB,CAAC,CAAC;aACjE,QAAQ,CACP,0JAA0J,CAC3J;QACH,WAAW,EAAE,CAAC;aACX,MAAM,EAAE;aACR,QAAQ,CACP,mJAAmJ,CACpJ;QACH,MAAM,EAAE,CAAC;aACN,MAAM,EAAE;aACR,GAAG,EAAE;aACL,GAAG,CAAC,CAAC,CAAC;aACN,OAAO,CAAC,CAAC,CAAC;aACV,QAAQ,CACP,+HAA+H,CAChI;QACH,UAAU,EAAE,CAAC;aACV,MAAM,EAAE;aACR,GAAG,CAAC,CAAC,CAAC;aACN,GAAG,CAAC,GAAG,CAAC;aACR,OAAO,CAAC,EAAE,CAAC;aACX,QAAQ,CACP,8IAA8I,CAC/I;KACJ,CAAC;IACF,MAAM,EAAE,CAAC,CAAC,MAAM,CAAC;QACf,IAAI,EAAE,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC,QAAQ,CAAC,oBAAoB,CAAC;KACzD,CAAC;IACF,2FAA2F;IAC3F,+DAA+D;IAC/D,mFAAmF;IACnF,UAAU,EAAE;QACV,UAAU,EAAE,CAAC;aACV,MAAM,EAAE;aACR,QAAQ,CACP,oFAAoF,CACrF;QACH,WAAW,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,6BAA6B,CAAC;QAC/D,UAAU,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,qDAAqD,CAAC;QACtF,MAAM,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,6CAA6C,CAAC;QAC1E,UAAU,EAAE,CAAC;aACV,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,CACP,iGAAiG,CAClG;QACH,SAAS,EAAE,CAAC,CAAC,OAAO,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,gDAAgD,CAAC;QAC5F,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,6BAA6B,CAAC;QACpE,GAAG,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,sCAAsC,CAAC;QAC3E,MAAM,EAAE,CAAC;aACN,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,CACP,oKAAoK,CACrK;KACJ;IACD,MAAM,EAAE;QACN;YACE,MAAM,EAAE,oBAAoB;YAC5B,IAAI,EAAE,gBAAgB,CAAC,eAAe;YACtC,IAAI,EAAE,yCAAyC;YAC/C,QAAQ,EACN,yFAAyF;SAC5F;QACD;YACE,MAAM,EAAE,sBAAsB;YAC9B,IAAI,EAAE,gBAAgB,CAAC,eAAe;YACtC,IAAI,EAAE,kEAAkE;YACxE,QAAQ,EACN,6GAA6G;SAChH;KACF;IAED,KAAK,CAAC,OAAO,CAAC,KAAK,EAAE,GAAG;QACtB,MAAM,MAAM,GAAG,gBAAgB,EAAE,CAAC;QAElC,sFAAsF;QACtF,MAAM,WAAW,GAAG,KAAK,CAAC,WAAW,CAAC,IAAI,EAAE,CAAC;QAC7C,IAAI,WAAW,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YAC7B,MAAM,GAAG,CAAC,IAAI,CAAC,oBAAoB,EAAE,SAAS,EAAE;gBAC9C,GAAG,GAAG,CAAC,WAAW,CAAC,oBAAoB,CAAC;aACzC,CAAC,CAAC;QACL,CAAC;QACD,sFAAsF;QACtF,6DAA6D;QAC7D,IAAI,KAAK,CAAC,UAAU,KAAK,QAAQ,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,WAAW,CAAC,EAAE,CAAC;YAChE,MAAM,GAAG,CAAC,IAAI,CACZ,sBAAsB,EACtB,2CAA2C,KAAK,CAAC,WAAW,sCAAsC,EAClG,EAAE,GAAG,GAAG,CAAC,WAAW,CAAC,sBAAsB,CAAC,EAAE,CAC/C,CAAC;QACJ,CAAC;QAED,MAAM,OAAO,GAAG,MAAM,MAAM,CAAC,oBAAoB,CAAC,KAAK,CAAC,UAAU,EAAE,WAAW,CAAC,CAAC;QAEjF,MAAM,UAAU,GAAG,OAAO,CAAC,MAAM,CAAC;QAClC,wFAAwF;QACxF,2EAA2E;QAC3E,MAAM,IAAI,GAAG,OAAO,CAAC,KAAK,CAAC,KAAK,CAAC,MAAM,EAAE,KAAK,CAAC,MAAM,GAAG,KAAK,CAAC,UAAU,CAAC,CAAC;QAC1E,MAAM,UAAU,GAAG,KAAK,CAAC,MAAM,GAAG,IAAI,CAAC,MAAM,CAAC;QAC9C,MAAM,OAAO,GAAG,UAAU,GAAG,UAAU,CAAC;QAExC,GAAG,CAAC,GAAG,CAAC,IAAI,CAAC,wBAAwB,EAAE;YACrC,UAAU,EAAE,KAAK,CAAC,UAAU;YAC5B,WAAW;YACX,UAAU;YACV,MAAM,EAAE,KAAK,CAAC,MAAM;YACpB,QAAQ,EAAE,IAAI,CAAC,MAAM;SACtB,CAAC,CAAC;QAEH,iFAAiF;QACjF,GAAG,CAAC,MAAM,CAAC,EAAE,UAAU,EAAE,KAAK,CAAC,UAAU,EAAE,WAAW,EAAE,UAAU,EAAE,MAAM,EAAE,KAAK,CAAC,MAAM,EAAE,CAAC,CAAC;QAC5F,IAAI,OAAO;YAAE,GAAG,CAAC,MAAM,CAAC,EAAE,UAAU,EAAE,CAAC,CAAC;QACxC,IAAI,UAAU,KAAK,CAAC,EAAE,CAAC;YACrB,GAAG,CAAC,MAAM,CAAC,MAAM,CACf,wBAAwB,WAAW,MAAM,KAAK,CAAC,UAAU,yKAAyK,CACnO,CAAC;QACJ,CAAC;aAAM,IAAI,IAAI,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YAC7B,GAAG,CAAC,MAAM,CAAC,MAAM,CACf,UAAU,KAAK,CAAC,MAAM,gBAAgB,UAAU,sBAAsB,WAAW,2BAA2B,UAAU,GAAG,CAC1H,CAAC;QACJ,CAAC;aAAM,IAAI,OAAO,EAAE,CAAC;YACnB,GAAG,CAAC,MAAM,CAAC,SAAS,CAAC;gBACnB,KAAK,EAAE,IAAI,CAAC,MAAM;gBAClB,GAAG,EAAE,KAAK,CAAC,UAAU;gBACrB,QAAQ,EAAE,gBAAgB,KAAK,CAAC,MAAM,GAAG,CAAC,IAAI,UAAU,OAAO,UAAU,iBAAiB,UAAU,qBAAqB;aAC1H,CAAC,CAAC;QACL,CAAC;QAED,OAAO,EAAE,IAAI,EAAE,CAAC;IAClB,CAAC;IAED,MAAM,CAAC,MAAM;QACX,IAAI,MAAM,CAAC,IAAI,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;YAC3B,OAAO,CAAC,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,SAAS,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,EAAE,CAAC,CAAC;QACrE,CAAC;QACD,qFAAqF;QACrF,0CAA0C;QAC1C,OAAO,CAAC,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,qBAAqB,EAAE,CAAC,CAAC;IACzD,CAAC;CACF,CAAC,CAAC"}
|
|
1
|
+
{"version":3,"file":"search-assays.tool.js","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/search-assays.tool.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAE,IAAI,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AACjE,OAAO,EAAE,gBAAgB,EAAE,MAAM,sCAAsC,CAAC;AAExE,MAAM,CAAC,MAAM,YAAY,GAAG,IAAI,CAAC,uBAAuB,EAAE;IACxD,KAAK,EAAE,eAAe;IACtB,WAAW,EACT,oRAAoR;IACtR,WAAW,EAAE;QACX,YAAY,EAAE,IAAI;QAClB,cAAc,EAAE,IAAI;QACpB,aAAa,EAAE,IAAI;KACpB;IACD,KAAK,EAAE,CAAC,CAAC,MAAM,CAAC;QACd,UAAU,EAAE,CAAC;aACV,IAAI,CAAC,CAAC,YAAY,EAAE,aAAa,EAAE,QAAQ,EAAE,kBAAkB,CAAC,CAAC;aACjE,QAAQ,CACP,0JAA0J,CAC3J;QACH,WAAW,EAAE,CAAC;aACX,MAAM,EAAE;aACR,QAAQ,CACP,mJAAmJ,CACpJ;QACH,MAAM,EAAE,CAAC;aACN,MAAM,EAAE;aACR,GAAG,EAAE;aACL,GAAG,CAAC,CAAC,CAAC;aACN,OAAO,CAAC,CAAC,CAAC;aACV,QAAQ,CACP,+HAA+H,CAChI;QACH,UAAU,EAAE,CAAC;aACV,MAAM,EAAE;aACR,GAAG,EAAE;aACL,GAAG,CAAC,CAAC,CAAC;aACN,GAAG,CAAC,GAAG,CAAC;aACR,OAAO,CAAC,EAAE,CAAC;aACX,QAAQ,CACP,8IAA8I,CAC/I;KACJ,CAAC;IACF,MAAM,EAAE,CAAC,CAAC,MAAM,CAAC;QACf,IAAI,EAAE,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC,CAAC,QAAQ,CAAC,oBAAoB,CAAC;KACzD,CAAC;IACF,2FAA2F;IAC3F,+DAA+D;IAC/D,mFAAmF;IACnF,UAAU,EAAE;QACV,UAAU,EAAE,CAAC;aACV,MAAM,EAAE;aACR,QAAQ,CACP,oFAAoF,CACrF;QACH,WAAW,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,6BAA6B,CAAC;QAC/D,UAAU,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,qDAAqD,CAAC;QACtF,MAAM,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,6CAA6C,CAAC;QAC1E,UAAU,EAAE,CAAC;aACV,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,CACP,iGAAiG,CAClG;QACH,SAAS,EAAE,CAAC,CAAC,OAAO,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,gDAAgD,CAAC;QAC5F,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,6BAA6B,CAAC;QACpE,GAAG,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,sCAAsC,CAAC;QAC3E,MAAM,EAAE,CAAC;aACN,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,CACP,oKAAoK,CACrK;KACJ;IACD,MAAM,EAAE;QACN;YACE,MAAM,EAAE,oBAAoB;YAC5B,IAAI,EAAE,gBAAgB,CAAC,eAAe;YACtC,IAAI,EAAE,yCAAyC;YAC/C,QAAQ,EACN,yFAAyF;SAC5F;QACD;YACE,MAAM,EAAE,sBAAsB;YAC9B,IAAI,EAAE,gBAAgB,CAAC,eAAe;YACtC,IAAI,EAAE,kEAAkE;YACxE,QAAQ,EACN,6GAA6G;SAChH;KACF;IAED,KAAK,CAAC,OAAO,CAAC,KAAK,EAAE,GAAG;QACtB,MAAM,MAAM,GAAG,gBAAgB,EAAE,CAAC;QAElC,sFAAsF;QACtF,MAAM,WAAW,GAAG,KAAK,CAAC,WAAW,CAAC,IAAI,EAAE,CAAC;QAC7C,IAAI,WAAW,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YAC7B,MAAM,GAAG,CAAC,IAAI,CAAC,oBAAoB,EAAE,SAAS,EAAE;gBAC9C,GAAG,GAAG,CAAC,WAAW,CAAC,oBAAoB,CAAC;aACzC,CAAC,CAAC;QACL,CAAC;QACD,sFAAsF;QACtF,6DAA6D;QAC7D,IAAI,KAAK,CAAC,UAAU,KAAK,QAAQ,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,WAAW,CAAC,EAAE,CAAC;YAChE,MAAM,GAAG,CAAC,IAAI,CACZ,sBAAsB,EACtB,2CAA2C,KAAK,CAAC,WAAW,sCAAsC,EAClG,EAAE,GAAG,GAAG,CAAC,WAAW,CAAC,sBAAsB,CAAC,EAAE,CAC/C,CAAC;QACJ,CAAC;QAED,MAAM,OAAO,GAAG,MAAM,MAAM,CAAC,oBAAoB,CAAC,KAAK,CAAC,UAAU,EAAE,WAAW,CAAC,CAAC;QAEjF,MAAM,UAAU,GAAG,OAAO,CAAC,MAAM,CAAC;QAClC,wFAAwF;QACxF,2EAA2E;QAC3E,MAAM,IAAI,GAAG,OAAO,CAAC,KAAK,CAAC,KAAK,CAAC,MAAM,EAAE,KAAK,CAAC,MAAM,GAAG,KAAK,CAAC,UAAU,CAAC,CAAC;QAC1E,MAAM,UAAU,GAAG,KAAK,CAAC,MAAM,GAAG,IAAI,CAAC,MAAM,CAAC;QAC9C,MAAM,OAAO,GAAG,UAAU,GAAG,UAAU,CAAC;QAExC,GAAG,CAAC,GAAG,CAAC,IAAI,CAAC,wBAAwB,EAAE;YACrC,UAAU,EAAE,KAAK,CAAC,UAAU;YAC5B,WAAW;YACX,UAAU;YACV,MAAM,EAAE,KAAK,CAAC,MAAM;YACpB,QAAQ,EAAE,IAAI,CAAC,MAAM;SACtB,CAAC,CAAC;QAEH,iFAAiF;QACjF,GAAG,CAAC,MAAM,CAAC,EAAE,UAAU,EAAE,KAAK,CAAC,UAAU,EAAE,WAAW,EAAE,UAAU,EAAE,MAAM,EAAE,KAAK,CAAC,MAAM,EAAE,CAAC,CAAC;QAC5F,IAAI,OAAO;YAAE,GAAG,CAAC,MAAM,CAAC,EAAE,UAAU,EAAE,CAAC,CAAC;QACxC,IAAI,UAAU,KAAK,CAAC,EAAE,CAAC;YACrB,GAAG,CAAC,MAAM,CAAC,MAAM,CACf,wBAAwB,WAAW,MAAM,KAAK,CAAC,UAAU,yKAAyK,CACnO,CAAC;QACJ,CAAC;aAAM,IAAI,IAAI,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YAC7B,GAAG,CAAC,MAAM,CAAC,MAAM,CACf,UAAU,KAAK,CAAC,MAAM,gBAAgB,UAAU,sBAAsB,WAAW,2BAA2B,UAAU,GAAG,CAC1H,CAAC;QACJ,CAAC;aAAM,IAAI,OAAO,EAAE,CAAC;YACnB,GAAG,CAAC,MAAM,CAAC,SAAS,CAAC;gBACnB,KAAK,EAAE,IAAI,CAAC,MAAM;gBAClB,GAAG,EAAE,KAAK,CAAC,UAAU;gBACrB,QAAQ,EAAE,gBAAgB,KAAK,CAAC,MAAM,GAAG,CAAC,IAAI,UAAU,OAAO,UAAU,iBAAiB,UAAU,qBAAqB;aAC1H,CAAC,CAAC;QACL,CAAC;QAED,OAAO,EAAE,IAAI,EAAE,CAAC;IAClB,CAAC;IAED,MAAM,CAAC,MAAM;QACX,IAAI,MAAM,CAAC,IAAI,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;YAC3B,OAAO,CAAC,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,SAAS,MAAM,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,EAAE,CAAC,CAAC;QACrE,CAAC;QACD,qFAAqF;QACrF,0CAA0C;QAC1C,OAAO,CAAC,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,qBAAqB,EAAE,CAAC,CAAC;IACzD,CAAC;CACF,CAAC,CAAC"}
|
|
@@ -27,6 +27,7 @@ export declare const searchCompounds: import("@cyanheads/mcp-ts-core").ToolDefin
|
|
|
27
27
|
smiles: "smiles";
|
|
28
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|
}>>;
|
|
29
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|
threshold: z.ZodDefault<z.ZodNumber>;
|
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30
|
+
offset: z.ZodDefault<z.ZodNumber>;
|
|
30
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|
maxResults: z.ZodDefault<z.ZodNumber>;
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|
31
32
|
properties: z.ZodOptional<z.ZodArray<z.ZodEnum<{
|
|
32
33
|
[x: string]: string;
|
|
@@ -62,6 +63,8 @@ export declare const searchCompounds: import("@cyanheads/mcp-ts-core").ToolDefin
|
|
|
62
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|
readonly searchType: z.ZodString;
|
|
63
64
|
readonly totalFound: z.ZodOptional<z.ZodNumber>;
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|
64
65
|
readonly totalFoundAtLeast: z.ZodOptional<z.ZodNumber>;
|
|
66
|
+
readonly offset: z.ZodNumber;
|
|
67
|
+
readonly nextOffset: z.ZodOptional<z.ZodNumber>;
|
|
65
68
|
readonly truncated: z.ZodOptional<z.ZodBoolean>;
|
|
66
69
|
readonly shown: z.ZodOptional<z.ZodNumber>;
|
|
67
70
|
readonly cap: z.ZodOptional<z.ZodNumber>;
|
|
@@ -1 +1 @@
|
|
|
1
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-
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