npm - @cyanheads/pubchem-mcp-server - Versions diffs - 0.1.21 → 0.1.23 - Mend

@cyanheads/pubchem-mcp-server 0.1.21 → 0.1.23

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (37) hide show

package/README.md CHANGED Viewed

@@ -7,7 +7,7 @@
 <div align="center">
-[![Version](https://img.shields.io/badge/Version-0.1.21-blue.svg?style=flat-square)](./CHANGELOG.md) [![License](https://img.shields.io/badge/License-Apache%202.0-orange.svg?style=flat-square)](./LICENSE) [![Docker](https://img.shields.io/badge/Docker-ghcr.io-2496ED?style=flat-square&logo=docker&logoColor=white)](https://github.com/users/cyanheads/packages/container/package/pubchem-mcp-server) [![MCP SDK](https://img.shields.io/badge/MCP%20SDK-^1.29.0-green.svg?style=flat-square)](https://modelcontextprotocol.io/) [![npm](https://img.shields.io/npm/v/@cyanheads/pubchem-mcp-server?style=flat-square&logo=npm&logoColor=white)](https://www.npmjs.com/package/@cyanheads/pubchem-mcp-server) [![TypeScript](https://img.shields.io/badge/TypeScript-^6.0.3-3178C6.svg?style=flat-square)](https://www.typescriptlang.org/) [![Bun](https://img.shields.io/badge/Bun-^1.3.0-f472b6.svg?style=flat-square)](https://bun.sh/)
+[![Version](https://img.shields.io/badge/Version-0.1.23-blue.svg?style=flat-square)](./CHANGELOG.md) [![License](https://img.shields.io/badge/License-Apache%202.0-orange.svg?style=flat-square)](./LICENSE) [![Docker](https://img.shields.io/badge/Docker-ghcr.io-2496ED?style=flat-square&logo=docker&logoColor=white)](https://github.com/users/cyanheads/packages/container/package/pubchem-mcp-server) [![MCP SDK](https://img.shields.io/badge/MCP%20SDK-^1.29.0-green.svg?style=flat-square)](https://modelcontextprotocol.io/) [![npm](https://img.shields.io/npm/v/@cyanheads/pubchem-mcp-server?style=flat-square&logo=npm&logoColor=white)](https://www.npmjs.com/package/@cyanheads/pubchem-mcp-server) [![TypeScript](https://img.shields.io/badge/TypeScript-^6.0.3-3178C6.svg?style=flat-square)](https://www.typescriptlang.org/) [![Bun](https://img.shields.io/badge/Bun-^1.3.0-f472b6.svg?style=flat-square)](https://bun.sh/)
 </div>

package/dist/mcp-server/tools/definitions/get-bioactivity.tool.d.ts CHANGED Viewed

@@ -29,5 +29,10 @@ export declare const getBioactivity: import("@cyanheads/mcp-ts-core").ToolDefini
             unit: z.ZodOptional<z.ZodString>;
         }, z.core.$strip>>;
     }, z.core.$strip>>;
-}, z.core.$strip>, undefined>;
+}, z.core.$strip>, undefined, {
+    readonly outcomeFilter: z.ZodString;
+    readonly filteredCount: z.ZodNumber;
+    readonly returnedCount: z.ZodNumber;
+    readonly notice: z.ZodOptional<z.ZodString>;
+}>;
 //# sourceMappingURL=get-bioactivity.tool.d.ts.map

package/dist/mcp-server/tools/definitions/get-bioactivity.tool.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"get-bioactivity.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/get-bioactivity.tool.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAGjD,eAAO,MAAM,cAAc;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EAsKzB,CAAC"}

package/dist/mcp-server/tools/definitions/get-bioactivity.tool.js CHANGED Viewed

@@ -67,6 +67,20 @@ export const getBioactivity = tool('pubchem_get_bioactivity', {
             .describe('Assay result entry.'))
             .describe('Assay results matching the filter.'),
     }),
+    // Agent-facing context — filter echo, the filtered/returned cap boundary, and a notice
+    // distinguishing "no data" from "filter excluded everything". Reaches structuredContent
+    // and content[]; keys disjoint from output (cid/totalAssays live there).
+    enrichment: {
+        outcomeFilter: z.string().describe('Outcome filter applied: active, inactive, or all.'),
+        filteredCount: z
+            .number()
+            .describe('Assays matching the outcome filter, before the maxResults cap.'),
+        returnedCount: z.number().describe('Assays returned after the maxResults cap.'),
+        notice: z
+            .string()
+            .optional()
+            .describe('Recovery guidance when the filter yields no results or the compound has no bioactivity data.'),
+    },
     async handler(input, ctx) {
         const client = getPubChemClient();
         const allRows = await client.getAssaySummary(input.cid);
@@ -87,6 +101,17 @@ export const getBioactivity = tool('pubchem_get_bioactivity', {
             active: activeCount,
             returned: results.length,
         });
+        ctx.enrich({
+            outcomeFilter: input.outcomeFilter,
+            filteredCount: filtered.length,
+            returnedCount: results.length,
+        });
+        if (allRows.length === 0) {
+            ctx.enrich.notice(`No bioactivity data found for CID ${input.cid}. The compound may be uncharacterized, or verify the CID with pubchem_search_compounds.`);
+        }
+        else if (filtered.length === 0) {
+            ctx.enrich.notice(`CID ${input.cid} has ${allRows.length} assay(s) but none match outcomeFilter="${input.outcomeFilter}". Use outcomeFilter="all" to see them.`);
+        }
         return {
             cid: input.cid,
             totalAssays: allRows.length,

package/dist/mcp-server/tools/definitions/get-bioactivity.tool.js.map CHANGED Viewed

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1	+ 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package/dist/mcp-server/tools/definitions/get-compound-details.tool.d.ts CHANGED Viewed

@@ -74,5 +74,5 @@ export declare const getCompoundDetails: import("@cyanheads/mcp-ts-core").ToolDe
             meshClasses: z.ZodArray<z.ZodString>;
         }, z.core.$strip>>;
     }, z.core.$strip>>;
-}, z.core.$strip>, undefined>;
+}, z.core.$strip>, undefined, undefined>;
 //# sourceMappingURL=get-compound-details.tool.d.ts.map

package/dist/mcp-server/tools/definitions/get-compound-details.tool.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"get-compound-details.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/get-compound-details.tool.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AA2GjD,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;~~6BAgX7B~~,CAAC"}
1	+ {"version":3,"file":"get-compound-details.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/get-compound-details.tool.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AA2GjD,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;wCAgX7B,CAAC"}

package/dist/mcp-server/tools/definitions/get-compound-image.tool.d.ts CHANGED Viewed

@@ -3,6 +3,7 @@
  * @module mcp-server/tools/definitions/get-compound-image
  */
 import { z } from '@cyanheads/mcp-ts-core';
+import { JsonRpcErrorCode } from '@cyanheads/mcp-ts-core/errors';
 export declare const getCompoundImage: import("@cyanheads/mcp-ts-core").ToolDefinition<z.ZodObject<{
     cid: z.ZodNumber;
     size: z.ZodDefault<z.ZodEnum<{
@@ -15,5 +16,10 @@ export declare const getCompoundImage: import("@cyanheads/mcp-ts-core").ToolDefi
     mimeType: z.ZodString;
     width: z.ZodNumber;
     height: z.ZodNumber;
-}, z.core.$strip>, undefined>;
+}, z.core.$strip>, readonly [{
+    readonly reason: "cid_not_found";
+    readonly code: JsonRpcErrorCode.NotFound;
+    readonly when: "PubChem returned 404 for the requested CID";
+    readonly recovery: "Verify the CID with pubchem_search_compounds before retrying.";
+}], undefined>;
 //# sourceMappingURL=get-compound-image.tool.d.ts.map

package/dist/mcp-server/tools/definitions/get-compound-image.tool.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"get-compound-image.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/get-compound-image.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAGjE,eAAO,MAAM,gBAAgB;;;;;;;;;;;;;;;;;cA4D3B,CAAC"}

package/dist/mcp-server/tools/definitions/get-compound-image.tool.js CHANGED Viewed

@@ -3,6 +3,7 @@
  * @module mcp-server/tools/definitions/get-compound-image
  */
 import { tool, z } from '@cyanheads/mcp-ts-core';
+import { JsonRpcErrorCode } from '@cyanheads/mcp-ts-core/errors';
 import { getPubChemClient } from '../../../services/pubchem/pubchem-client.js';
 export const getCompoundImage = tool('pubchem_get_compound_image', {
     title: 'Get Compound Image',
@@ -30,6 +31,14 @@ export const getCompoundImage = tool('pubchem_get_compound_image', {
         width: z.number().describe('Image width in pixels.'),
         height: z.number().describe('Image height in pixels.'),
     }),
+    errors: [
+        {
+            reason: 'cid_not_found',
+            code: JsonRpcErrorCode.NotFound,
+            when: 'PubChem returned 404 for the requested CID',
+            recovery: 'Verify the CID with pubchem_search_compounds before retrying.',
+        },
+    ],
     async handler(input, ctx) {
         const client = getPubChemClient();
         const buffer = await client.getImage(input.cid, input.size);

package/dist/mcp-server/tools/definitions/get-compound-image.tool.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/mcp-server/tools/definitions/get-compound-safety.tool.d.ts CHANGED Viewed

@@ -21,5 +21,7 @@ export declare const getCompoundSafety: import("@cyanheads/mcp-ts-core").ToolDef
         }, z.core.$strip>>;
     }, z.core.$strip>>;
     source: z.ZodOptional<z.ZodString>;
-}, z.core.$strip>, undefined>;
+}, z.core.$strip>, undefined, {
+    readonly notice: z.ZodOptional<z.ZodString>;
+}>;
 //# sourceMappingURL=get-compound-safety.tool.d.ts.map

package/dist/mcp-server/tools/definitions/get-compound-safety.tool.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"get-compound-safety.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/get-compound-safety.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAGjD,eAAO,MAAM,iBAAiB;;;;;;;;;;;;;;;;;;;;EAsH5B,CAAC"}

package/dist/mcp-server/tools/definitions/get-compound-safety.tool.js CHANGED Viewed

@@ -49,11 +49,20 @@ export const getCompoundSafety = tool('pubchem_get_compound_safety', {
             .describe('GHS classification data.'),
         source: z.string().optional().describe('Data source attribution.'),
     }),
+    // Agent-facing context — a cross-tool notice when no GHS data exists, pointing to an
+    // alternative source. Reaches structuredContent and content[]; disjoint from output.
+    enrichment: {
+        notice: z
+            .string()
+            .optional()
+            .describe('Cross-tool guidance when no GHS data is available, pointing to an alternative source.'),
+    },
     async handler(input, ctx) {
         const client = getPubChemClient();
         const data = await client.getSafetyData(input.cid);
         ctx.log.info('Safety data fetched', { cid: input.cid, hasData: data !== null });
         if (!data) {
+            ctx.enrich.notice(`No GHS classification on file for CID ${input.cid}. Try pubchem_get_compound_details with includeDescription for hazard context, or the compound may simply lack deposited safety data.`);
             return { cid: input.cid, hasData: false };
         }
         return {

package/dist/mcp-server/tools/definitions/get-compound-safety.tool.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"get-compound-safety.tool.js","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/get-compound-safety.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAE,IAAI,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,sCAAsC,CAAC;AAExE,MAAM,CAAC,MAAM,iBAAiB,GAAG,IAAI,CAAC,6BAA6B,EAAE;IACnE,KAAK,EAAE,qBAAqB;IAC5B,WAAW,EACT,sQAAsQ;IACxQ,WAAW,EAAE;QACX,YAAY,EAAE,IAAI;QAClB,cAAc,EAAE,IAAI;QACpB,aAAa,EAAE,IAAI;KACpB;IACD,KAAK,EAAE,CAAC,CAAC,MAAM,CAAC;QACd,GAAG,EAAE,CAAC;aACH,MAAM,EAAE;aACR,GAAG,EAAE;aACL,QAAQ,EAAE;aACV,QAAQ,CAAC,8EAA8E,CAAC;KAC5F,CAAC;IACF,MAAM,EAAE,CAAC,CAAC,MAAM,CAAC;QACf,GAAG,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,sBAAsB,CAAC;QAChD,OAAO,EAAE,CAAC,CAAC,OAAO,EAAE,CAAC,QAAQ,CAAC,yDAAyD,CAAC;QACxF,GAAG,EAAE,CAAC;aACH,MAAM,CAAC;YACN,UAAU,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,yCAAyC,CAAC;YACrF,UAAU,EAAE,CAAC;iBACV,KAAK,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC;iBACjB,QAAQ,CAAC,mDAAmD,CAAC;YAChE,gBAAgB,EAAE,CAAC;iBAChB,KAAK,CACJ,CAAC;iBACE,MAAM,CAAC;gBACN,IAAI,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,uBAAuB,CAAC;gBAClD,SAAS,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,wBAAwB,CAAC;aACzD,CAAC;iBACD,QAAQ,CAAC,6BAA6B,CAAC,CAC3C;iBACA,QAAQ,CAAC,wBAAwB,CAAC;YACrC,uBAAuB,EAAE,CAAC;iBACvB,KAAK,CACJ,CAAC;iBACE,MAAM,CAAC;gBACN,IAAI,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,uBAAuB,CAAC;gBAClD,SAAS,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,+BAA+B,CAAC;aAChE,CAAC;iBACD,QAAQ,CAAC,oCAAoC,CAAC,CAClD;iBACA,QAAQ,CAAC,+BAA+B,CAAC;SAC7C,CAAC;aACD,QAAQ,EAAE;aACV,QAAQ,CAAC,0BAA0B,CAAC;QACvC,MAAM,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,0BAA0B,CAAC;KACnE,CAAC;IACF,qFAAqF;IACrF,qFAAqF;IACrF,UAAU,EAAE;QACV,MAAM,EAAE,CAAC;aACN,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,CACP,uFAAuF,CACxF;KACJ;IAED,KAAK,CAAC,OAAO,CAAC,KAAK,EAAE,GAAG;QACtB,MAAM,MAAM,GAAG,gBAAgB,EAAE,CAAC;QAClC,MAAM,IAAI,GAAG,MAAM,MAAM,CAAC,aAAa,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC;QAEnD,GAAG,CAAC,GAAG,CAAC,IAAI,CAAC,qBAAqB,EAAE,EAAE,GAAG,EAAE,KAAK,CAAC,GAAG,EAAE,OAAO,EAAE,IAAI,KAAK,IAAI,EAAE,CAAC,CAAC;QAEhF,IAAI,CAAC,IAAI,EAAE,CAAC;YACV,GAAG,CAAC,MAAM,CAAC,MAAM,CACf,yCAAyC,KAAK,CAAC,GAAG,uIAAuI,CAC1L,CAAC;YACF,OAAO,EAAE,GAAG,EAAE,KAAK,CAAC,GAAG,EAAE,OAAO,EAAE,KAAK,EAAE,CAAC;QAC5C,CAAC;QAED,OAAO;YACL,GAAG,EAAE,KAAK,CAAC,GAAG;YACd,OAAO,EAAE,IAAI;YACb,GAAG,EAAE;gBACH,UAAU,EAAE,IAAI,CAAC,UAAU;gBAC3B,UAAU,EAAE,IAAI,CAAC,UAAU;gBAC3B,gBAAgB,EAAE,IAAI,CAAC,gBAAgB;gBACvC,uBAAuB,EAAE,IAAI,CAAC,uBAAuB;aACtD;YACD,MAAM,EAAE,IAAI,CAAC,MAAM;SACpB,CAAC;IACJ,CAAC;IAED,MAAM,CAAC,MAAM;QACX,IAAI,CAAC,MAAM,CAAC,OAAO,IAAI,CAAC,MAAM,CAAC,GAAG,EAAE,CAAC;YACnC,OAAO,CAAC,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,wCAAwC,MAAM,CAAC,GAAG,GAAG,EAAE,CAAC,CAAC;QACzF,CAAC;QAED,MAAM,KAAK,GAAa,CAAC,4BAA4B,MAAM,CAAC,GAAG,EAAE,EAAE,EAAE,CAAC,CAAC;QACvE,MAAM,CAAC,GAAG,MAAM,CAAC,GAAG,CAAC;QAErB,IAAI,CAAC,CAAC,UAAU;YAAE,KAAK,CAAC,IAAI,CAAC,oBAAoB,CAAC,CAAC,UAAU,EAAE,CAAC,CAAC;QACjE,IAAI,CAAC,CAAC,UAAU,CAAC,MAAM,GAAG,CAAC;YAAE,KAAK,CAAC,IAAI,CAAC,mBAAmB,CAAC,CAAC,UAAU,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;QAEtF,IAAI,CAAC,CAAC,gBAAgB,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;YAClC,KAAK,CAAC,IAAI,CAAC,EAAE,EAAE,wBAAwB,CAAC,CAAC;YACzC,KAAK,MAAM,CAAC,IAAI,CAAC,CAAC,gBAAgB,EAAE,CAAC;gBACnC,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,IAAI,KAAK,CAAC,CAAC,SAAS,EAAE,CAAC,CAAC;YAC5C,CAAC;QACH,CAAC;QAED,IAAI,CAAC,CAAC,uBAAuB,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;YACzC,KAAK,CAAC,IAAI,CAAC,EAAE,EAAE,+BAA+B,CAAC,CAAC;YAChD,KAAK,MAAM,CAAC,IAAI,CAAC,CAAC,uBAAuB,EAAE,CAAC;gBAC1C,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,IAAI,KAAK,CAAC,CAAC,SAAS,EAAE,CAAC,CAAC;YAC5C,CAAC;QACH,CAAC;QAED,IAAI,MAAM,CAAC,MAAM,EAAE,CAAC;YAClB,KAAK,CAAC,IAAI,CAAC,EAAE,EAAE,YAAY,MAAM,CAAC,MAAM,GAAG,CAAC,CAAC;QAC/C,CAAC;QAED,OAAO,CAAC,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IACpD,CAAC;CACF,CAAC,CAAC"}

package/dist/mcp-server/tools/definitions/get-compound-xrefs.tool.d.ts CHANGED Viewed

@@ -17,5 +17,5 @@ export declare const getCompoundXrefs: import("@cyanheads/mcp-ts-core").ToolDefi
         totalAvailable: z.ZodNumber;
         truncated: z.ZodBoolean;
     }, z.core.$strip>>;
-}, z.core.$strip>, undefined>;
+}, z.core.$strip>, undefined, undefined>;
 //# sourceMappingURL=get-compound-xrefs.tool.d.ts.map

package/dist/mcp-server/tools/definitions/get-compound-xrefs.tool.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"get-compound-xrefs.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/get-compound-xrefs.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAMjD,eAAO,MAAM,gBAAgB;;;;;;;;;;;;;;~~6BAmH3B~~,CAAC"}
1	+ {"version":3,"file":"get-compound-xrefs.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/get-compound-xrefs.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAMjD,eAAO,MAAM,gBAAgB;;;;;;;;;;;;;;wCAmH3B,CAAC"}

package/dist/mcp-server/tools/definitions/get-summary.tool.d.ts CHANGED Viewed

@@ -35,5 +35,9 @@ export declare const getSummary: import("@cyanheads/mcp-ts-core").ToolDefinition
             lineage: z.ZodOptional<z.ZodArray<z.ZodString>>;
         }, z.core.$strip>>;
     }, z.core.$strip>>;
-}, z.core.$strip>, undefined>;
+}, z.core.$strip>, undefined, {
+    readonly requestedCount: z.ZodNumber;
+    readonly foundCount: z.ZodNumber;
+    readonly notice: z.ZodOptional<z.ZodString>;
+}>;
 //# sourceMappingURL=get-summary.tool.d.ts.map

package/dist/mcp-server/tools/definitions/get-summary.tool.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"get-summary.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/get-summary.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAkCjD,eAAO,MAAM,UAAU~~;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;6BAsGrB~~,CAAC"}
1	+ {"version":3,"file":"get-summary.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/get-summary.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAkCjD,eAAO,MAAM,UAAU;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EAyHrB,CAAC"}

package/dist/mcp-server/tools/definitions/get-summary.tool.js CHANGED Viewed

@@ -69,6 +69,16 @@ export const getSummary = tool('pubchem_get_summary', {
             .describe('Per-identifier summary result.'))
             .describe('Summary results.'),
     }),
+    // Agent-facing context — requested/found counts and a notice when any identifier missed.
+    // Reaches structuredContent and content[]; keys disjoint from output.
+    enrichment: {
+        requestedCount: z.number().describe('Identifiers requested.'),
+        foundCount: z.number().describe('Identifiers resolved to a summary.'),
+        notice: z
+            .string()
+            .optional()
+            .describe('Recovery guidance when one or more identifiers were not found.'),
+    },
     async handler(input, ctx) {
         const client = getPubChemClient();
         const summaries = await Promise.all(input.identifiers.map(async (id) => {
@@ -78,11 +88,16 @@ export const getSummary = tool('pubchem_get_summary', {
             const data = extractSummary(input.entityType, raw);
             return { identifier: id, found: true, data };
         }));
+        const foundCount = summaries.filter((s) => s.found).length;
         ctx.log.info('Summaries fetched', {
             entityType: input.entityType,
             requested: input.identifiers.length,
-            found: summaries.filter((s) => s.found).length,
+            found: foundCount,
         });
+        ctx.enrich({ requestedCount: input.identifiers.length, foundCount });
+        if (foundCount < input.identifiers.length) {
+            ctx.enrich.notice(`${input.identifiers.length - foundCount} of ${input.identifiers.length} ${input.entityType} identifier(s) not found. Verify the ID type matches entityType="${input.entityType}" (assay: AID, gene: Gene ID, protein: UniProt accession, taxonomy: Tax ID).`);
+        }
         return { entityType: input.entityType, summaries };
     },
     format(result) {

package/dist/mcp-server/tools/definitions/get-summary.tool.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/mcp-server/tools/definitions/index.d.ts CHANGED Viewed

@@ -27,7 +27,12 @@ export declare const allToolDefinitions: (import("@cyanheads/mcp-ts-core").ToolD
             unit: import("zod").ZodOptional<import("zod").ZodString>;
         }, import("zod/v4/core").$strip>>;
     }, import("zod/v4/core").$strip>>;
-}, import("zod/v4/core").$strip>, undefined> | import("@cyanheads/mcp-ts-core").ToolDefinition<import("zod").ZodObject<{
+}, import("zod/v4/core").$strip>, undefined, {
+    readonly outcomeFilter: import("zod").ZodString;
+    readonly filteredCount: import("zod").ZodNumber;
+    readonly returnedCount: import("zod").ZodNumber;
+    readonly notice: import("zod").ZodOptional<import("zod").ZodString>;
+}> | import("@cyanheads/mcp-ts-core").ToolDefinition<import("zod").ZodObject<{
     cids: import("zod").ZodArray<import("zod").ZodNumber>;
     properties: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodEnum<{
         [x: string]: string;
@@ -97,7 +102,7 @@ export declare const allToolDefinitions: (import("@cyanheads/mcp-ts-core").ToolD
             meshClasses: import("zod").ZodArray<import("zod").ZodString>;
         }, import("zod/v4/core").$strip>>;
     }, import("zod/v4/core").$strip>>;
-}, import("zod/v4/core").$strip>, undefined> | import("@cyanheads/mcp-ts-core").ToolDefinition<import("zod").ZodObject<{
+}, import("zod/v4/core").$strip>, undefined, undefined> | import("@cyanheads/mcp-ts-core").ToolDefinition<import("zod").ZodObject<{
     cid: import("zod").ZodNumber;
     size: import("zod").ZodDefault<import("zod").ZodEnum<{
         small: "small";
@@ -109,7 +114,12 @@ export declare const allToolDefinitions: (import("@cyanheads/mcp-ts-core").ToolD
     mimeType: import("zod").ZodString;
     width: import("zod").ZodNumber;
     height: import("zod").ZodNumber;
-}, import("zod/v4/core").$strip>, undefined> | import("@cyanheads/mcp-ts-core").ToolDefinition<import("zod").ZodObject<{
+}, import("zod/v4/core").$strip>, readonly [{
+    readonly reason: "cid_not_found";
+    readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.NotFound;
+    readonly when: "PubChem returned 404 for the requested CID";
+    readonly recovery: "Verify the CID with pubchem_search_compounds before retrying.";
+}], undefined> | import("@cyanheads/mcp-ts-core").ToolDefinition<import("zod").ZodObject<{
     cid: import("zod").ZodNumber;
 }, import("zod/v4/core").$strip>, import("zod").ZodObject<{
     cid: import("zod").ZodNumber;
@@ -127,7 +137,9 @@ export declare const allToolDefinitions: (import("@cyanheads/mcp-ts-core").ToolD
         }, import("zod/v4/core").$strip>>;
     }, import("zod/v4/core").$strip>>;
     source: import("zod").ZodOptional<import("zod").ZodString>;
-}, import("zod/v4/core").$strip>, undefined> | import("@cyanheads/mcp-ts-core").ToolDefinition<import("zod").ZodObject<{
+}, import("zod/v4/core").$strip>, undefined, {
+    readonly notice: import("zod").ZodOptional<import("zod").ZodString>;
+}> | import("@cyanheads/mcp-ts-core").ToolDefinition<import("zod").ZodObject<{
     cid: import("zod").ZodNumber;
     xrefTypes: import("zod").ZodArray<import("zod").ZodEnum<{
         [x: string]: string;
@@ -141,7 +153,7 @@ export declare const allToolDefinitions: (import("@cyanheads/mcp-ts-core").ToolD
         totalAvailable: import("zod").ZodNumber;
         truncated: import("zod").ZodBoolean;
     }, import("zod/v4/core").$strip>>;
-}, import("zod/v4/core").$strip>, undefined> | import("@cyanheads/mcp-ts-core").ToolDefinition<import("zod").ZodObject<{
+}, import("zod/v4/core").$strip>, undefined, undefined> | import("@cyanheads/mcp-ts-core").ToolDefinition<import("zod").ZodObject<{
     entityType: import("zod").ZodEnum<{
         assay: "assay";
         gene: "gene";
@@ -173,7 +185,11 @@ export declare const allToolDefinitions: (import("@cyanheads/mcp-ts-core").ToolD
             lineage: import("zod").ZodOptional<import("zod").ZodArray<import("zod").ZodString>>;
         }, import("zod/v4/core").$strip>>;
     }, import("zod/v4/core").$strip>>;
-}, import("zod/v4/core").$strip>, undefined> | import("@cyanheads/mcp-ts-core").ToolDefinition<import("zod").ZodObject<{
+}, import("zod/v4/core").$strip>, undefined, {
+    readonly requestedCount: import("zod").ZodNumber;
+    readonly foundCount: import("zod").ZodNumber;
+    readonly notice: import("zod").ZodOptional<import("zod").ZodString>;
+}> | import("@cyanheads/mcp-ts-core").ToolDefinition<import("zod").ZodObject<{
     targetType: import("zod").ZodEnum<{
         proteinaccession: "proteinaccession";
         genesymbol: "genesymbol";
@@ -183,11 +199,13 @@ export declare const allToolDefinitions: (import("@cyanheads/mcp-ts-core").ToolD
     targetQuery: import("zod").ZodString;
     maxResults: import("zod").ZodDefault<import("zod").ZodNumber>;
 }, import("zod/v4/core").$strip>, import("zod").ZodObject<{
-    targetType: import("zod").ZodString;
-    targetQuery: import("zod").ZodString;
-    totalFound: import("zod").ZodNumber;
     aids: import("zod").ZodArray<import("zod").ZodNumber>;
-}, import("zod/v4/core").$strip>, undefined> | import("@cyanheads/mcp-ts-core").ToolDefinition<import("zod").ZodObject<{
+}, import("zod/v4/core").$strip>, undefined, {
+    readonly targetType: import("zod").ZodString;
+    readonly targetQuery: import("zod").ZodString;
+    readonly totalFound: import("zod").ZodNumber;
+    readonly notice: import("zod").ZodOptional<import("zod").ZodString>;
+}> | import("@cyanheads/mcp-ts-core").ToolDefinition<import("zod").ZodObject<{
     searchType: import("zod").ZodEnum<{
         substructure: "substructure";
         superstructure: "superstructure";
@@ -214,8 +232,6 @@ export declare const allToolDefinitions: (import("@cyanheads/mcp-ts-core").ToolD
         [x: string]: string;
     }>>>;
 }, import("zod/v4/core").$strip>, import("zod").ZodObject<{
-    searchType: import("zod").ZodString;
-    totalFound: import("zod").ZodNumber;
     results: import("zod").ZodArray<import("zod").ZodObject<{
         cid: import("zod").ZodNumber;
         identifier: import("zod").ZodOptional<import("zod").ZodString>;
@@ -236,5 +252,9 @@ export declare const allToolDefinitions: (import("@cyanheads/mcp-ts-core").ToolD
     readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.ValidationError;
     readonly when: "substructure/superstructure/similarity search missing query or queryType";
     readonly recovery: "Provide both query (SMILES string or CID as string) and queryType (\"smiles\" or \"cid\").";
-}]>)[];
+}], {
+    readonly searchType: import("zod").ZodString;
+    readonly totalFound: import("zod").ZodNumber;
+    readonly notice: import("zod").ZodOptional<import("zod").ZodString>;
+}>)[];
 //# sourceMappingURL=index.d.ts.map

package/dist/mcp-server/tools/definitions/index.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/index.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAWH,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;MAS9B,CAAC"}
1	+ {"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/index.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAWH,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;KAS9B,CAAC"}

package/dist/mcp-server/tools/definitions/search-assays.tool.d.ts CHANGED Viewed

@@ -14,9 +14,11 @@ export declare const searchAssays: import("@cyanheads/mcp-ts-core").ToolDefiniti
     targetQuery: z.ZodString;
     maxResults: z.ZodDefault<z.ZodNumber>;
 }, z.core.$strip>, z.ZodObject<{
-    targetType: z.ZodString;
-    targetQuery: z.ZodString;
-    totalFound: z.ZodNumber;
     aids: z.ZodArray<z.ZodNumber>;
-}, z.core.$strip>, undefined>;
+}, z.core.$strip>, undefined, {
+    readonly targetType: z.ZodString;
+    readonly targetQuery: z.ZodString;
+    readonly totalFound: z.ZodNumber;
+    readonly notice: z.ZodOptional<z.ZodString>;
+}>;
 //# sourceMappingURL=search-assays.tool.d.ts.map

package/dist/mcp-server/tools/definitions/search-assays.tool.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"search-assays.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/search-assays.tool.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAGjD,eAAO,MAAM,YAAY;;;;;;;;;;;;;;;;EAiFvB,CAAC"}

package/dist/mcp-server/tools/definitions/search-assays.tool.js CHANGED Viewed

@@ -28,13 +28,21 @@ export const searchAssays = tool('pubchem_search_assays', {
             .describe('Max AIDs to return (1-200). Popular targets may have thousands of assays. Default: 50.'),
     }),
     output: z.object({
+        aids: z.array(z.number()).describe('PubChem Assay IDs.'),
+    }),
+    // Agent-facing context — target echo, total before cap, and an empty-result notice.
+    // Reaches structuredContent and content[] automatically; not in the domain return.
+    enrichment: {
         targetType: z
             .string()
             .describe('Target identifier type used: genesymbol, proteinname, geneid, or proteinaccession.'),
         targetQuery: z.string().describe('Target identifier searched.'),
-        totalFound: z.number().describe('Total AIDs found.'),
-        aids: z.array(z.number()).describe('PubChem Assay IDs.'),
-    }),
+        totalFound: z.number().describe('Total AIDs found before the maxResults cap.'),
+        notice: z
+            .string()
+            .optional()
+            .describe('Recovery guidance when no assays matched — echoes the target and suggests alternative search types. Absent when assays were returned.'),
+    },
     async handler(input, ctx) {
         const client = getPubChemClient();
         const allAids = await client.searchAssaysByTarget(input.targetType, input.targetQuery);
@@ -46,28 +54,18 @@ export const searchAssays = tool('pubchem_search_assays', {
             totalFound,
             returned: aids.length,
         });
-        return {
-            targetType: input.targetType,
-            targetQuery: input.targetQuery,
-            totalFound,
-            aids,
-        };
+        // Agent-facing context: target echo, total, and empty-result notice.
+        ctx.enrich({ targetType: input.targetType, targetQuery: input.targetQuery, totalFound });
+        if (aids.length === 0) {
+            ctx.enrich.notice(`No assays found for "${input.targetQuery}" (${input.targetType}). Try a different targetType (e.g. switch from proteinname to genesymbol), verify the identifier spelling, or use pubchem_get_summary for gene/protein entity lookups.`);
+        }
+        return { aids };
     },
     format(result) {
-        const truncated = result.totalFound > result.aids.length
-            ? ` (showing ${result.aids.length} of ${result.totalFound})`
-            : '';
-        const lines = [
-            `Found ${result.totalFound} assay${result.totalFound !== 1 ? 's' : ''} for "${result.targetQuery}" (${result.targetType})${truncated}`,
-            '',
-        ];
         if (result.aids.length > 0) {
-            lines.push(`AIDs: ${result.aids.join(', ')}`);
-        }
-        else {
-            lines.push('No assays found.');
+            return [{ type: 'text', text: `AIDs: ${result.aids.join(', ')}` }];
         }
-        return [{ type: 'text', text: lines.join('\n') }];
+        return [{ type: 'text', text: 'No assays found.' }];
     },
 });
 //# sourceMappingURL=search-assays.tool.js.map

package/dist/mcp-server/tools/definitions/search-assays.tool.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/mcp-server/tools/definitions/search-compounds.tool.d.ts CHANGED Viewed

@@ -32,8 +32,6 @@ export declare const searchCompounds: import("@cyanheads/mcp-ts-core").ToolDefin
         [x: string]: string;
     }>>>;
 }, z.core.$strip>, z.ZodObject<{
-    searchType: z.ZodString;
-    totalFound: z.ZodNumber;
     results: z.ZodArray<z.ZodObject<{
         cid: z.ZodNumber;
         identifier: z.ZodOptional<z.ZodString>;
@@ -54,5 +52,9 @@ export declare const searchCompounds: import("@cyanheads/mcp-ts-core").ToolDefin
     readonly code: JsonRpcErrorCode.ValidationError;
     readonly when: "substructure/superstructure/similarity search missing query or queryType";
     readonly recovery: "Provide both query (SMILES string or CID as string) and queryType (\"smiles\" or \"cid\").";
-}]>;
+}], {
+    readonly searchType: z.ZodString;
+    readonly totalFound: z.ZodNumber;
+    readonly notice: z.ZodOptional<z.ZodString>;
+}>;
 //# sourceMappingURL=search-compounds.tool.d.ts.map

package/dist/mcp-server/tools/definitions/search-compounds.tool.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/mcp-server/tools/definitions/search-compounds.tool.js CHANGED Viewed

@@ -72,10 +72,6 @@ export const searchCompounds = tool('pubchem_search_compounds', {
             .describe('Optional: fetch these properties for each result, avoiding a follow-up details call. E.g. ["MolecularFormula", "MolecularWeight", "CanonicalSMILES"].'),
     }),
     output: z.object({
-        searchType: z
-            .string()
-            .describe('Search strategy used: identifier, formula, substructure, superstructure, or similarity.'),
-        totalFound: z.number().describe('Total CIDs found (before maxResults cap).'),
         results: z
             .array(z
             .object({
@@ -92,6 +88,18 @@ export const searchCompounds = tool('pubchem_search_compounds', {
             .describe('Matching compound entry.'))
             .describe('Matching compounds.'),
     }),
+    // Agent-facing context — search strategy echo, total before cap, and an empty-result
+    // notice. Reaches structuredContent and content[] automatically; not in the domain return.
+    enrichment: {
+        searchType: z
+            .string()
+            .describe('Search strategy used: identifier, formula, substructure, superstructure, or similarity.'),
+        totalFound: z.number().describe('Total CIDs found before the maxResults cap.'),
+        notice: z
+            .string()
+            .optional()
+            .describe('Recovery guidance when no compounds matched — echoes search strategy and suggests how to broaden. Absent when results were returned.'),
+    },
     errors: [
         {
             reason: 'missing_identifier_args',
@@ -175,6 +183,11 @@ export const searchCompounds = tool('pubchem_search_compounds', {
             totalFound,
             returned: cappedCids.length,
         });
+        // Agent-facing context: search strategy echo, total, and empty-result notice.
+        ctx.enrich({ searchType: input.searchType, totalFound });
+        if (cappedCids.length === 0) {
+            ctx.enrich.notice(`No compounds matched the ${input.searchType} search. Try a different identifier, broaden the formula, lower the similarity threshold, or verify the SMILES/CID.`);
+        }
         // Optionally hydrate with properties
         let propsMap;
         if (input.properties && input.properties.length > 0 && cappedCids.length > 0) {
@@ -193,14 +206,10 @@ export const searchCompounds = tool('pubchem_search_compounds', {
             }
             return result;
         });
-        return { searchType: input.searchType, totalFound, results };
+        return { results };
     },
     format(result) {
         const lines = [];
-        const count = result.results.length;
-        const truncated = result.totalFound > count ? ` (showing ${count} of ${result.totalFound})` : '';
-        lines.push(`Found ${result.totalFound} compound${result.totalFound !== 1 ? 's' : ''}${truncated} — ${result.searchType} search`);
-        lines.push('');
         if (result.results.length === 0) {
             lines.push('No results.');
             return [{ type: 'text', text: lines.join('\n') }];

package/dist/mcp-server/tools/definitions/search-compounds.tool.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/services/pubchem/pubchem-client.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/services/pubchem/pubchem-client.js CHANGED Viewed

@@ -3,7 +3,7 @@
  * Wraps both PUG REST and PUG View APIs behind a shared rate limiter.
  * @module services/pubchem/pubchem-client
  */
-import { JsonRpcErrorCode, McpError } from '@cyanheads/mcp-ts-core/errors';
+import { JsonRpcErrorCode, McpError, notFound } from '@cyanheads/mcp-ts-core/errors';
 import { httpErrorFromResponse } from '@cyanheads/mcp-ts-core/utils';
 const isNotFound = (error) => error instanceof McpError && error.code === JsonRpcErrorCode.NotFound;
 // ── Rate Limiter ─────────────────────────────────────────────────────
@@ -357,9 +357,23 @@ export class PubChemClient {
             throw error;
         }
     }
-    getImage(cid, size = 'large') {
+    async getImage(cid, size = 'large') {
         const sizeParam = size === 'small' ? '?image_size=small' : '?image_size=large';
-        return this.fetchBinary(`${this.pugBase}/compound/cid/${cid}/PNG${sizeParam}`);
+        try {
+            return await this.fetchBinary(`${this.pugBase}/compound/cid/${cid}/PNG${sizeParam}`);
+        }
+        catch (error) {
+            // The image endpoint returns binary, so absence can't be a structured success like
+            // the other per-CID tools — surface a typed not-found with a recovery hint instead.
+            if (isNotFound(error)) {
+                throw notFound(`No PubChem compound found for CID ${cid}.`, {
+                    cid,
+                    reason: 'cid_not_found',
+                    recovery: { hint: 'Verify the CID with pubchem_search_compounds before retrying.' },
+                });
+            }
+            throw error;
+        }
     }
     async getXrefs(cid, xrefType) {
         try {

package/dist/services/pubchem/pubchem-client.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/manifest.json CHANGED Viewed

@@ -1,7 +1,7 @@
 {
   "manifest_version": "0.3",
   "name": "pubchem-mcp-server",
-  "version": "0.1.21",
+  "version": "0.1.23",
   "description": "Search PubChem compounds, properties, safety data, bioactivity, cross-references, and entity summaries via MCP.",
   "author": {
     "name": "cyanheads"

package/package.json CHANGED Viewed

@@ -1,6 +1,6 @@
 {
   "name": "@cyanheads/pubchem-mcp-server",
-  "version": "0.1.21",
+  "version": "0.1.23",
   "description": "MCP server for the PubChem chemical database. Search compounds, fetch properties, safety data, bioactivity, cross-references, and entity summaries. STDIO & Streamable HTTP.",
   "mcpName": "io.github.cyanheads/pubchem-mcp-server",
   "type": "module",
@@ -18,7 +18,8 @@
     "audit:refresh": "rm -f bun.lock && bun install && bun audit",
     "tree": "bun scripts/tree.ts",
     "list-skills": "bun scripts/list-skills.ts",
-    "format": "biome check --write --unsafe .",
+    "format": "biome check --write .",
+    "format:unsafe": "biome check --write --unsafe .",
     "lint:mcp": "bun scripts/lint-mcp.ts",
     "lint:packaging": "bun scripts/lint-packaging.ts",
     "bundle": "bun run build && npx -y @anthropic-ai/mcpb pack . dist/pubchem-mcp-server.mcpb",
@@ -71,7 +72,7 @@
     "access": "public"
   },
   "dependencies": {
-    "@cyanheads/mcp-ts-core": "^0.9.13",
+    "@cyanheads/mcp-ts-core": "^0.9.16",
     "pino-pretty": "^13.1.3",
     "zod": "^4.4.3"
   },
@@ -82,6 +83,6 @@
     "ignore": "^7.0.5",
     "tsc-alias": "^1.8.17",
     "typescript": "^6.0.3",
-    "vitest": "^4.1.7"
+    "vitest": "^4.1.8"
   }
 }

package/server.json CHANGED Viewed

@@ -6,7 +6,7 @@
     "url": "https://github.com/cyanheads/pubchem-mcp-server",
     "source": "github"
   },
-  "version": "0.1.21",
+  "version": "0.1.23",
   "remotes": [
     {
       "type": "streamable-http",
@@ -19,7 +19,7 @@
       "registryBaseUrl": "https://registry.npmjs.org",
       "identifier": "@cyanheads/pubchem-mcp-server",
       "runtimeHint": "bun",
-      "version": "0.1.21",
+      "version": "0.1.23",
       "packageArguments": [
         { "type": "positional", "value": "run" },
         { "type": "positional", "value": "start:stdio" }
@@ -42,7 +42,7 @@
       "registryBaseUrl": "https://registry.npmjs.org",
       "identifier": "@cyanheads/pubchem-mcp-server",
       "runtimeHint": "bun",
-      "version": "0.1.21",
+      "version": "0.1.23",
       "packageArguments": [
         { "type": "positional", "value": "run" },
         { "type": "positional", "value": "start:http" }