npm - @cyanheads/pubchem-mcp-server - Versions diffs - 0.1.13 → 0.1.15 - Mend

@cyanheads/pubchem-mcp-server 0.1.13 → 0.1.15

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (16) hide show

package/README.md CHANGED Viewed

@@ -6,7 +6,7 @@
 <div align="center">
-[![Version](https://img.shields.io/badge/Version-0.1.13-blue.svg?style=flat-square)](./CHANGELOG.md) [![Framework](https://img.shields.io/badge/Built%20on-@cyanheads/mcp--ts--core-259?style=flat-square)](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) [![MCP SDK](https://img.shields.io/badge/MCP%20SDK-^1.27.1-green.svg?style=flat-square)](https://modelcontextprotocol.io/) [![License](https://img.shields.io/badge/License-Apache%202.0-orange.svg?style=flat-square)](./LICENSE) [![TypeScript](https://img.shields.io/badge/TypeScript-^6.0.3-3178C6.svg?style=flat-square)](https://www.typescriptlang.org/) [![Bun](https://img.shields.io/badge/Bun-^1.2.0-f472b6.svg?style=flat-square)](https://bun.sh/)
+[![Version](https://img.shields.io/badge/Version-0.1.15-blue.svg?style=flat-square)](./CHANGELOG.md) [![Framework](https://img.shields.io/badge/Built%20on-@cyanheads/mcp--ts--core-259?style=flat-square)](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) [![MCP SDK](https://img.shields.io/badge/MCP%20SDK-^1.29.0-green.svg?style=flat-square)](https://modelcontextprotocol.io/) [![License](https://img.shields.io/badge/License-Apache%202.0-orange.svg?style=flat-square)](./LICENSE) [![TypeScript](https://img.shields.io/badge/TypeScript-^6.0.3-3178C6.svg?style=flat-square)](https://www.typescriptlang.org/) [![Bun](https://img.shields.io/badge/Bun-^1.2.0-f472b6.svg?style=flat-square)](https://bun.sh/)
 </div>

package/dist/mcp-server/tools/definitions/get-compound-details.tool.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"get-compound-details.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/get-compound-details.tool.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAyGjD,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;~~kBAmX7B~~,CAAC"}
1	+ {"version":3,"file":"get-compound-details.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/get-compound-details.tool.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAyGjD,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;kBAwX7B,CAAC"}

package/dist/mcp-server/tools/definitions/get-compound-details.tool.js CHANGED Viewed

@@ -273,9 +273,9 @@ export const getCompoundDetails = tool('pubchem_get_compound_details', {
             }
             const p = c.properties;
             const name = p.IUPACName ?? p.Title ?? '';
-            const header = name ? `## CID ${c.cid} — ${name}` : `## CID ${c.cid}`;
+            const header = name ? `## CID ${c.cid} — ${name} (found)` : `## CID ${c.cid} (found)`;
             blocks.push(header);
-            const lines = [];
+            const lines = ['**Properties:**'];
             // Key identifiers
             if (p.MolecularFormula)
                 lines.push(`**Formula:** ${p.MolecularFormula}`);
@@ -298,7 +298,7 @@ export const getCompoundDetails = tool('pubchem_get_compound_details', {
             if (p.Complexity != null)
                 drugProps.push(`Complexity: ${p.Complexity}`);
             if (drugProps.length > 0)
-                lines.push(`**Properties:** ${drugProps.join(' | ')}`);
+                lines.push(`**Descriptors:** ${drugProps.join(' | ')}`);
             // Atom/bond counts
             const counts = [];
             if (p.HBondDonorCount != null)
@@ -381,13 +381,17 @@ export const getCompoundDetails = tool('pubchem_get_compound_details', {
             }
             // Descriptions (with source attribution; truncated to maxDescriptions)
             if (c.descriptions && c.descriptions.length > 0) {
-                const descLines = [''];
+                const total = c.descriptionsTotal ?? c.descriptions.length;
+                const shown = c.descriptions.length;
+                const header = total > shown
+                    ? `\n**Descriptions** (showing ${shown} of ${total} total)`
+                    : `\n**Descriptions** (${total} total)`;
+                const descLines = [header];
                 for (const d of c.descriptions) {
                     const label = d.source ? `**Description (${d.source}):**` : '**Description:**';
                     descLines.push(`${label} ${d.text}`);
                 }
-                const total = c.descriptionsTotal ?? c.descriptions.length;
-                const more = total - c.descriptions.length;
+                const more = total - shown;
                 if (more > 0) {
                     descLines.push(`_+${more} more description${more === 1 ? '' : 's'} from other sources — increase maxDescriptions to see them._`);
                 }

package/dist/mcp-server/tools/definitions/get-compound-details.tool.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/mcp-server/tools/definitions/get-compound-safety.tool.js CHANGED Viewed

@@ -66,7 +66,7 @@ export const getCompoundSafety = tool('pubchem_get_compound_safety', {
         if (!result.hasData || !result.ghs) {
             return [{ type: 'text', text: `No GHS safety data available for CID ${result.cid}.` }];
         }
-        const lines = [`## GHS Safety — CID ${result.cid}`, ''];
+        const lines = [`## GHS Safety Data — CID ${result.cid}`, ''];
         const g = result.ghs;
         if (g.signalWord)
             lines.push(`**Signal Word:** ${g.signalWord}`);

package/dist/mcp-server/tools/definitions/get-compound-safety.tool.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/mcp-server/tools/definitions/get-compound-xrefs.tool.js CHANGED Viewed

@@ -70,7 +70,7 @@ export const getCompoundXrefs = tool('pubchem_get_compound_xrefs', {
         const lines = [`Cross-references for CID ${result.cid}`, ''];
         for (const xref of result.xrefs) {
             const countInfo = xref.truncated
-                ? `${xref.ids.length} of ${xref.totalAvailable} total`
+                ? `${xref.ids.length} of ${xref.totalAvailable} total — truncated`
                 : `${xref.totalAvailable} total`;
             lines.push(`**${xref.type}** (${countInfo})`);
             if (xref.ids.length > 0) {

package/dist/mcp-server/tools/definitions/get-compound-xrefs.tool.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/mcp-server/tools/definitions/get-summary.tool.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"get-summary.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/get-summary.tool.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAkCjD,eAAO,MAAM,UAAU;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;~~kBA4FrB~~,CAAC"}
1	+ {"version":3,"file":"get-summary.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/get-summary.tool.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAkCjD,eAAO,MAAM,UAAU;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;kBA6FrB,CAAC"}

package/dist/mcp-server/tools/definitions/get-summary.tool.js CHANGED Viewed

@@ -83,14 +83,15 @@ export const getSummary = tool('pubchem_get_summary', {
         const lines = [`## ${capitalize(result.entityType)} Summaries`, ''];
         for (const s of result.summaries) {
             if (!s.found || !s.data) {
-                lines.push(`**${s.identifier}** — not found`);
+                lines.push(`**Identifier ${s.identifier}** — not found`);
                 lines.push('');
                 continue;
             }
             const d = s.data;
-            lines.push(`**${d.name ?? d.symbol ?? s.identifier}**`);
+            const displayName = d.name ?? d.symbol ?? String(s.identifier);
+            lines.push(`**${displayName}** (identifier: ${s.identifier}, found)`);
             for (const [key, value] of Object.entries(d)) {
-                if (value == null || key === 'name' || key === 'symbol')
+                if (value == null || key === 'name')
                     continue;
                 if (Array.isArray(value)) {
                     if (value.length === 0)

package/dist/mcp-server/tools/definitions/get-summary.tool.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/mcp-server/tools/definitions/search-compounds.tool.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"search-compounds.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/search-compounds.tool.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAgBjD,eAAO,MAAM,eAAe;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;~~kBAsO1B~~,CAAC"}
1	+ {"version":3,"file":"search-compounds.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/search-compounds.tool.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAgBjD,eAAO,MAAM,eAAe;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;kBAuO1B,CAAC"}

package/dist/mcp-server/tools/definitions/search-compounds.tool.js CHANGED Viewed

@@ -191,7 +191,8 @@ export const searchCompounds = tool('pubchem_search_compounds', {
                 lines.push(`**${label}**`);
                 if (r.properties) {
                     const entries = Object.entries(r.properties);
-                    lines.push(entries.map(([k, v]) => `  ${k}: ${v}`).join('\n'));
+                    lines.push('  **Properties:**');
+                    lines.push(entries.map(([k, v]) => `    ${k}: ${v}`).join('\n'));
                 }
                 lines.push('');
             }

package/dist/mcp-server/tools/definitions/search-compounds.tool.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/package.json CHANGED Viewed

@@ -1,6 +1,6 @@
 {
   "name": "@cyanheads/pubchem-mcp-server",
-  "version": "0.1.13",
+  "version": "0.1.15",
   "description": "MCP server for the PubChem chemical database. Search compounds, fetch properties, safety data, bioactivity, cross-references, and entity summaries. STDIO & Streamable HTTP.",
   "mcpName": "io.github.cyanheads/pubchem-mcp-server",
   "type": "module",
@@ -62,14 +62,9 @@
     "access": "public"
   },
   "dependencies": {
-    "@cyanheads/mcp-ts-core": "^0.3.5",
+    "@cyanheads/mcp-ts-core": "^0.5.3",
     "pino-pretty": "^13.1.3"
   },
-  "overrides": {
-    "brace-expansion": ">=2.0.3",
-    "path-to-regexp": ">=8.4.0",
-    "picomatch": ">=4.0.4"
-  },
   "devDependencies": {
     "@biomejs/biome": "^2.4.12",
     "@types/node": "^25.6.0",

package/server.json CHANGED Viewed

@@ -6,7 +6,7 @@
     "url": "https://github.com/cyanheads/pubchem-mcp-server",
     "source": "github"
   },
-  "version": "0.1.13",
+  "version": "0.1.15",
   "remotes": [
     {
       "type": "streamable-http",
@@ -19,7 +19,7 @@
       "registryBaseUrl": "https://registry.npmjs.org",
       "identifier": "@cyanheads/pubchem-mcp-server",
       "runtimeHint": "bun",
-      "version": "0.1.13",
+      "version": "0.1.15",
       "packageArguments": [
         { "type": "positional", "value": "run" },
         { "type": "positional", "value": "start:stdio" }
@@ -42,7 +42,7 @@
       "registryBaseUrl": "https://registry.npmjs.org",
       "identifier": "@cyanheads/pubchem-mcp-server",
       "runtimeHint": "bun",
-      "version": "0.1.13",
+      "version": "0.1.15",
       "packageArguments": [
         { "type": "positional", "value": "run" },
         { "type": "positional", "value": "start:http" }