@cyanheads/protein-mcp-server 0.8.1 → 0.8.3

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (51) hide show
  1. package/AGENTS.md +17 -9
  2. package/CLAUDE.md +17 -9
  3. package/README.md +10 -9
  4. package/changelog/0.8.x/0.8.2.md +24 -0
  5. package/changelog/0.8.x/0.8.3.md +23 -0
  6. package/changelog/template.md +7 -7
  7. package/dist/config/server-config.d.ts +2 -0
  8. package/dist/config/server-config.d.ts.map +1 -1
  9. package/dist/config/server-config.js +13 -1
  10. package/dist/config/server-config.js.map +1 -1
  11. package/dist/index.js +1 -1
  12. package/dist/index.js.map +1 -1
  13. package/dist/mcp-server/tools/definitions/analyze-collection.tool.d.ts.map +1 -1
  14. package/dist/mcp-server/tools/definitions/analyze-collection.tool.js +4 -16
  15. package/dist/mcp-server/tools/definitions/analyze-collection.tool.js.map +1 -1
  16. package/dist/mcp-server/tools/definitions/compare-structures.tool.d.ts +10 -0
  17. package/dist/mcp-server/tools/definitions/compare-structures.tool.d.ts.map +1 -1
  18. package/dist/mcp-server/tools/definitions/compare-structures.tool.js +77 -24
  19. package/dist/mcp-server/tools/definitions/compare-structures.tool.js.map +1 -1
  20. package/dist/mcp-server/tools/definitions/find-similar.tool.d.ts +5 -0
  21. package/dist/mcp-server/tools/definitions/find-similar.tool.d.ts.map +1 -1
  22. package/dist/mcp-server/tools/definitions/find-similar.tool.js +20 -6
  23. package/dist/mcp-server/tools/definitions/find-similar.tool.js.map +1 -1
  24. package/dist/mcp-server/tools/definitions/get-annotations.tool.d.ts.map +1 -1
  25. package/dist/mcp-server/tools/definitions/get-annotations.tool.js +2 -11
  26. package/dist/mcp-server/tools/definitions/get-annotations.tool.js.map +1 -1
  27. package/dist/mcp-server/tools/definitions/get-structure.tool.d.ts.map +1 -1
  28. package/dist/mcp-server/tools/definitions/get-structure.tool.js +84 -36
  29. package/dist/mcp-server/tools/definitions/get-structure.tool.js.map +1 -1
  30. package/dist/mcp-server/tools/definitions/search-structures.tool.d.ts.map +1 -1
  31. package/dist/mcp-server/tools/definitions/search-structures.tool.js +22 -25
  32. package/dist/mcp-server/tools/definitions/search-structures.tool.js.map +1 -1
  33. package/dist/mcp-server/tools/definitions/track-ligands.tool.d.ts.map +1 -1
  34. package/dist/mcp-server/tools/definitions/track-ligands.tool.js +6 -10
  35. package/dist/mcp-server/tools/definitions/track-ligands.tool.js.map +1 -1
  36. package/dist/services/alignment/alignment-service.d.ts +17 -4
  37. package/dist/services/alignment/alignment-service.d.ts.map +1 -1
  38. package/dist/services/alignment/alignment-service.js +31 -21
  39. package/dist/services/alignment/alignment-service.js.map +1 -1
  40. package/dist/services/rcsb/rcsb-service.d.ts +13 -3
  41. package/dist/services/rcsb/rcsb-service.d.ts.map +1 -1
  42. package/dist/services/rcsb/rcsb-service.js +35 -5
  43. package/dist/services/rcsb/rcsb-service.js.map +1 -1
  44. package/dist/services/rcsb/types.d.ts +21 -0
  45. package/dist/services/rcsb/types.d.ts.map +1 -1
  46. package/dist/services/shared/identifiers.d.ts +8 -1
  47. package/dist/services/shared/identifiers.d.ts.map +1 -1
  48. package/dist/services/shared/identifiers.js +12 -1
  49. package/dist/services/shared/identifiers.js.map +1 -1
  50. package/package.json +6 -6
  51. package/server.json +3 -3
package/server.json CHANGED
@@ -6,7 +6,7 @@
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  "url": "https://github.com/cyanheads/protein-mcp-server",
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  "source": "github"
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  },
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- "version": "0.8.1",
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+ "version": "0.8.3",
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  "remotes": [
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  {
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  "type": "streamable-http",
@@ -19,7 +19,7 @@
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  "registryBaseUrl": "https://registry.npmjs.org",
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  "identifier": "@cyanheads/protein-mcp-server",
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  "runtimeHint": "node",
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- "version": "0.8.1",
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+ "version": "0.8.3",
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  "packageArguments": [
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  {
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  "type": "positional",
@@ -48,7 +48,7 @@
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  "registryBaseUrl": "https://registry.npmjs.org",
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  "identifier": "@cyanheads/protein-mcp-server",
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  "runtimeHint": "node",
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- "version": "0.8.1",
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+ "version": "0.8.3",
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  "packageArguments": [
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  {
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  "type": "positional",