@cyanheads/protein-mcp-server 0.7.0 → 0.8.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/AGENTS.md +33 -17
- package/CLAUDE.md +33 -17
- package/README.md +76 -86
- package/changelog/0.8.x/0.8.0.md +22 -0
- package/changelog/0.8.x/0.8.1.md +29 -0
- package/changelog/template.md +7 -24
- package/dist/index.js +2 -0
- package/dist/index.js.map +1 -1
- package/dist/mcp-server/tools/definitions/find-similar.tool.d.ts +9 -0
- package/dist/mcp-server/tools/definitions/find-similar.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/find-similar.tool.js +88 -24
- package/dist/mcp-server/tools/definitions/find-similar.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/get-annotations.tool.d.ts +11 -1
- package/dist/mcp-server/tools/definitions/get-annotations.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/get-annotations.tool.js +32 -2
- package/dist/mcp-server/tools/definitions/get-annotations.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/get-structure.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/get-structure.tool.js +14 -4
- package/dist/mcp-server/tools/definitions/get-structure.tool.js.map +1 -1
- package/dist/services/foldseek/foldseek-service.d.ts +12 -1
- package/dist/services/foldseek/foldseek-service.d.ts.map +1 -1
- package/dist/services/foldseek/foldseek-service.js +17 -12
- package/dist/services/foldseek/foldseek-service.js.map +1 -1
- package/dist/services/rcsb/rcsb-service.d.ts +31 -1
- package/dist/services/rcsb/rcsb-service.d.ts.map +1 -1
- package/dist/services/rcsb/rcsb-service.js +113 -22
- package/dist/services/rcsb/rcsb-service.js.map +1 -1
- package/package.json +9 -8
- package/server.json +3 -3
package/package.json
CHANGED
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@@ -1,6 +1,6 @@
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{
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"name": "@cyanheads/protein-mcp-server",
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"version": "0.
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"version": "0.8.1",
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"mcpName": "io.github.cyanheads/protein-mcp-server",
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"description": "Federated protein structure & annotation across experimental (PDB) and predicted (AlphaFold) models via MCP. STDIO or Streamable HTTP.",
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"type": "module",
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@@ -24,6 +24,7 @@
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"rebuild": "bun run scripts/clean.ts && bun run scripts/build.ts",
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"clean": "bun run scripts/clean.ts",
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"devcheck": "bun run scripts/devcheck.ts",
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"audit:fix": "bun audit fix",
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"audit:refresh": "rm -f bun.lock && bun install && bun audit",
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"tree": "bun run scripts/tree.ts",
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"list-skills": "bun run scripts/list-skills.ts",
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@@ -84,24 +85,24 @@
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"license": "Apache-2.0",
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"packageManager": "bun@1.4.0",
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"engines": {
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"bun": ">=1.
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"bun": ">=1.4.0",
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"node": ">=24.0.0"
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},
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"publishConfig": {
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"access": "public"
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},
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"dependencies": {
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"@cyanheads/mcp-ts-core": "^0.
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"@cyanheads/mcp-ts-core": "^0.13.2",
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"pino-pretty": "^13.1.3",
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"zod": "^4.
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"zod": "^4.6.4"
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},
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"devDependencies": {
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"@biomejs/biome": "2.5.
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"@biomejs/biome": "2.5.13",
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"@socketsecurity/bun-security-scanner": "^1.1.2",
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"@types/node": "26.
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"@types/node": "26.5.1",
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"depcheck": "^1.4.7",
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"ignore": "^7.0.
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"tsc-alias": "^1.9.
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"ignore": "^7.0.9",
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"tsc-alias": "^1.9.5",
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"typescript": "^7.0.2",
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"vitest": "^5.0.0"
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}
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package/server.json
CHANGED
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"url": "https://github.com/cyanheads/protein-mcp-server",
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"source": "github"
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},
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"version": "0.
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"version": "0.8.1",
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"remotes": [
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{
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"type": "streamable-http",
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"registryBaseUrl": "https://registry.npmjs.org",
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"identifier": "@cyanheads/protein-mcp-server",
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"runtimeHint": "node",
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"version": "0.
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"version": "0.8.1",
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"packageArguments": [
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{
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"type": "positional",
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"registryBaseUrl": "https://registry.npmjs.org",
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"identifier": "@cyanheads/protein-mcp-server",
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"runtimeHint": "node",
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"version": "0.
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"version": "0.8.1",
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"packageArguments": [
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{
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"type": "positional",
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