@cyanheads/protein-mcp-server 0.5.0 → 0.5.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (21) hide show
  1. package/AGENTS.md +8 -8
  2. package/CLAUDE.md +8 -8
  3. package/Dockerfile +2 -2
  4. package/README.md +2 -2
  5. package/changelog/0.5.x/0.5.1.md +14 -0
  6. package/changelog/0.5.x/0.5.2.md +22 -0
  7. package/dist/config/server-config.d.ts.map +1 -1
  8. package/dist/config/server-config.js +1 -1
  9. package/dist/config/server-config.js.map +1 -1
  10. package/dist/index.js +15 -0
  11. package/dist/index.js.map +1 -1
  12. package/dist/mcp-server/tools/definitions/_schemas.d.ts +12 -0
  13. package/dist/mcp-server/tools/definitions/_schemas.d.ts.map +1 -1
  14. package/dist/mcp-server/tools/definitions/_schemas.js +20 -0
  15. package/dist/mcp-server/tools/definitions/_schemas.js.map +1 -1
  16. package/dist/mcp-server/tools/definitions/analyze-collection.tool.d.ts +1 -0
  17. package/dist/mcp-server/tools/definitions/analyze-collection.tool.d.ts.map +1 -1
  18. package/dist/mcp-server/tools/definitions/analyze-collection.tool.js +16 -3
  19. package/dist/mcp-server/tools/definitions/analyze-collection.tool.js.map +1 -1
  20. package/package.json +6 -6
  21. package/server.json +3 -3
package/AGENTS.md CHANGED
@@ -1,10 +1,10 @@
1
1
  # Developer Protocol
2
2
 
3
3
  **Server:** protein-mcp-server
4
- **Version:** 0.5.0
5
- **Framework:** [@cyanheads/mcp-ts-core](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) `^0.11.5`
4
+ **Version:** 0.5.2
5
+ **Framework:** [@cyanheads/mcp-ts-core](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) `^0.12.3`
6
6
  **Engines:** Bun ≥1.3.0, Node ≥24.0.0
7
- **MCP SDK:** `@modelcontextprotocol/sdk` ^1.30.0
7
+ **MCP SDK:** `@modelcontextprotocol/server` ^2.0.0
8
8
  **Zod:** ^4.4.3
9
9
  **TypeScript:** ^7.0.2
10
10
 
@@ -36,7 +36,7 @@ Tailor suggestions to what's actually missing or stale — don't recite the full
36
36
  - **Logic throws, framework catches.** Tool/resource handlers are pure — throw on failure, no `try/catch`. Plain `Error` is fine; the framework catches, classifies, and formats. Use error factories (`notFound()`, `validationError()`, etc.) when the error code matters.
37
37
  - **Use `ctx.log`** for request-scoped logging. No `console` calls.
38
38
  - **Use `ctx.state`** for tenant-scoped storage. Never access persistence directly.
39
- - **Check `ctx.elicit`** for presence before calling.
39
+ - **Need input the caller didn't supply?** `return ctx.requestInput(...)` and read `ctx.inputs` when the handler is re-entered. Never `await` for user input mid-handler.
40
40
  - **Secrets in env vars only** — never hardcoded.
41
41
  - **Close the loop on issues.** When implementing work tracked by a GitHub issue, comment on the issue with what landed and close it. Do both — a comment without a close leaves stale issues open; a close without a comment leaves no record of what shipped. The comment is for future readers — state the concrete changes, not the conversation that produced them.
42
42
 
@@ -188,13 +188,13 @@ Handlers receive a unified `ctx` object. Key properties:
188
188
 
189
189
  | Property | Description |
190
190
  |:---------|:------------|
191
- | `ctx.log` | Request-scoped logger — `.debug()`, `.info()`, `.notice()`, `.warning()`, `.error()`. Auto-correlates requestId, traceId, tenantId. |
191
+ | `ctx.log` | Request-scoped logger — `.debug()`, `.info()`, `.notice()`, `.warning()`, `.error()`. Auto-correlates requestId, traceId, tenantId. Dual-sink: Pino **and** `notifications/message` to the client, so treat it as client-visible. |
192
192
  | `ctx.state` | Tenant-scoped KV — `.get(key)`, `.set(key, value, { ttl? })`, `.delete(key)`, `.getMany(keys)`, `.list(prefix, { cursor, limit })`. Accepts any serializable value. |
193
- | `ctx.elicit` | Ask user for structured input — form call `(message, schema)` or `.url(message, url)` for an external link. **Check for presence first:** `if (ctx.elicit) { ... }` |
193
+ | `ctx.requestInput` | Suspend and ask the caller for more input — `return ctx.requestInput({ inputRequests: { key: inputRequired.elicit({ message, requestedSchema }) } })`. Never returns; the handler is re-entered with the answers. Always present. |
194
+ | `ctx.inputs` | Reader over a retried request's responses — `.accepted(key, schema)`, `.view(key)`, `.state()`, `.dropped`. Empty on the first round. |
194
195
  | `ctx.enrich` | Success-path agent context (empty-result notices, query echo, pagination totals) — `ctx.enrich(...)` or `.notice()` / `.total()` / `.echo()` / `.truncated()`. Reaches `structuredContent` and `content[]`; lands only when the definition declares an `enrichment` block (no-op otherwise). |
195
196
  | `ctx.content` | Non-text content blocks — `.image(data, mimeType)`, `.audio(data, mimeType)`, or `ctx.content(block)` for a raw block. Prepended to `content[]` after `format()`; never enters `structuredContent`. |
196
197
  | `ctx.signal` | `AbortSignal` for cancellation. |
197
- | `ctx.progress` | Task progress (present when `task: true`) — `.setTotal(n)`, `.increment()`, `.update(message)`. |
198
198
  | `ctx.requestId` | Unique request ID. |
199
199
  | `ctx.tenantId` | Tenant ID from JWT; `'default'` for stdio or HTTP with auth off. |
200
200
 
@@ -313,7 +313,7 @@ Available skills:
313
313
  | `api-auth` | Auth modes, scopes, JWT/OAuth |
314
314
  | `api-canvas` | DataCanvas: register tabular data, run SQL, export, plus the `spillover()` helper for big result sets — Tier 3 opt-in |
315
315
  | `api-config` | AppConfig, parseConfig, env vars |
316
- | `api-context` | Context interface, logger, state, progress |
316
+ | `api-context` | Context interface, RequestContext, logger, state, multi-round-trip input |
317
317
  | `api-errors` | McpError, JsonRpcErrorCode, error patterns |
318
318
  | `api-linter` | Definition linter rule catalog — invoked by `bun run lint:mcp` and `devcheck` |
319
319
  | `api-mirror` | MirrorService: persistent self-refreshing local mirror (embedded SQLite + FTS5) of a bulk upstream dataset — Tier 3 opt-in |
package/CLAUDE.md CHANGED
@@ -1,10 +1,10 @@
1
1
  # Developer Protocol
2
2
 
3
3
  **Server:** protein-mcp-server
4
- **Version:** 0.5.0
5
- **Framework:** [@cyanheads/mcp-ts-core](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) `^0.11.5`
4
+ **Version:** 0.5.2
5
+ **Framework:** [@cyanheads/mcp-ts-core](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) `^0.12.3`
6
6
  **Engines:** Bun ≥1.3.0, Node ≥24.0.0
7
- **MCP SDK:** `@modelcontextprotocol/sdk` ^1.30.0
7
+ **MCP SDK:** `@modelcontextprotocol/server` ^2.0.0
8
8
  **Zod:** ^4.4.3
9
9
  **TypeScript:** ^7.0.2
10
10
 
@@ -36,7 +36,7 @@ Tailor suggestions to what's actually missing or stale — don't recite the full
36
36
  - **Logic throws, framework catches.** Tool/resource handlers are pure — throw on failure, no `try/catch`. Plain `Error` is fine; the framework catches, classifies, and formats. Use error factories (`notFound()`, `validationError()`, etc.) when the error code matters.
37
37
  - **Use `ctx.log`** for request-scoped logging. No `console` calls.
38
38
  - **Use `ctx.state`** for tenant-scoped storage. Never access persistence directly.
39
- - **Check `ctx.elicit`** for presence before calling.
39
+ - **Need input the caller didn't supply?** `return ctx.requestInput(...)` and read `ctx.inputs` when the handler is re-entered. Never `await` for user input mid-handler.
40
40
  - **Secrets in env vars only** — never hardcoded.
41
41
  - **Close the loop on issues.** When implementing work tracked by a GitHub issue, comment on the issue with what landed and close it. Do both — a comment without a close leaves stale issues open; a close without a comment leaves no record of what shipped. The comment is for future readers — state the concrete changes, not the conversation that produced them.
42
42
 
@@ -188,13 +188,13 @@ Handlers receive a unified `ctx` object. Key properties:
188
188
 
189
189
  | Property | Description |
190
190
  |:---------|:------------|
191
- | `ctx.log` | Request-scoped logger — `.debug()`, `.info()`, `.notice()`, `.warning()`, `.error()`. Auto-correlates requestId, traceId, tenantId. |
191
+ | `ctx.log` | Request-scoped logger — `.debug()`, `.info()`, `.notice()`, `.warning()`, `.error()`. Auto-correlates requestId, traceId, tenantId. Dual-sink: Pino **and** `notifications/message` to the client, so treat it as client-visible. |
192
192
  | `ctx.state` | Tenant-scoped KV — `.get(key)`, `.set(key, value, { ttl? })`, `.delete(key)`, `.getMany(keys)`, `.list(prefix, { cursor, limit })`. Accepts any serializable value. |
193
- | `ctx.elicit` | Ask user for structured input — form call `(message, schema)` or `.url(message, url)` for an external link. **Check for presence first:** `if (ctx.elicit) { ... }` |
193
+ | `ctx.requestInput` | Suspend and ask the caller for more input — `return ctx.requestInput({ inputRequests: { key: inputRequired.elicit({ message, requestedSchema }) } })`. Never returns; the handler is re-entered with the answers. Always present. |
194
+ | `ctx.inputs` | Reader over a retried request's responses — `.accepted(key, schema)`, `.view(key)`, `.state()`, `.dropped`. Empty on the first round. |
194
195
  | `ctx.enrich` | Success-path agent context (empty-result notices, query echo, pagination totals) — `ctx.enrich(...)` or `.notice()` / `.total()` / `.echo()` / `.truncated()`. Reaches `structuredContent` and `content[]`; lands only when the definition declares an `enrichment` block (no-op otherwise). |
195
196
  | `ctx.content` | Non-text content blocks — `.image(data, mimeType)`, `.audio(data, mimeType)`, or `ctx.content(block)` for a raw block. Prepended to `content[]` after `format()`; never enters `structuredContent`. |
196
197
  | `ctx.signal` | `AbortSignal` for cancellation. |
197
- | `ctx.progress` | Task progress (present when `task: true`) — `.setTotal(n)`, `.increment()`, `.update(message)`. |
198
198
  | `ctx.requestId` | Unique request ID. |
199
199
  | `ctx.tenantId` | Tenant ID from JWT; `'default'` for stdio or HTTP with auth off. |
200
200
 
@@ -313,7 +313,7 @@ Available skills:
313
313
  | `api-auth` | Auth modes, scopes, JWT/OAuth |
314
314
  | `api-canvas` | DataCanvas: register tabular data, run SQL, export, plus the `spillover()` helper for big result sets — Tier 3 opt-in |
315
315
  | `api-config` | AppConfig, parseConfig, env vars |
316
- | `api-context` | Context interface, logger, state, progress |
316
+ | `api-context` | Context interface, RequestContext, logger, state, multi-round-trip input |
317
317
  | `api-errors` | McpError, JsonRpcErrorCode, error patterns |
318
318
  | `api-linter` | Definition linter rule catalog — invoked by `bun run lint:mcp` and `devcheck` |
319
319
  | `api-mirror` | MirrorService: persistent self-refreshing local mirror (embedded SQLite + FTS5) of a bulk upstream dataset — Tier 3 opt-in |
package/Dockerfile CHANGED
@@ -4,7 +4,7 @@
4
4
  # This stage installs all dependencies (including dev), builds the TypeScript
5
5
  # source code into JavaScript, and prepares the production assets.
6
6
  # ==============================================================================
7
- FROM oven/bun:1.3.14 AS build
7
+ FROM --platform=$BUILDPLATFORM oven/bun:1.4.0 AS build
8
8
 
9
9
  WORKDIR /usr/src/app
10
10
 
@@ -30,7 +30,7 @@ RUN bun run build
30
30
  # application. It uses a slim base image and only includes production
31
31
  # dependencies and build artifacts.
32
32
  # ==============================================================================
33
- FROM oven/bun:1.3.14-slim AS production
33
+ FROM oven/bun:1.4.0-slim AS production
34
34
 
35
35
  WORKDIR /usr/src/app
36
36
 
package/README.md CHANGED
@@ -7,7 +7,7 @@
7
7
 
8
8
  <div align="center">
9
9
 
10
- [![Version](https://img.shields.io/badge/Version-0.5.0-blue.svg?style=flat-square)](./CHANGELOG.md) [![License](https://img.shields.io/badge/License-Apache%202.0-orange.svg?style=flat-square)](./LICENSE) [![Docker](https://img.shields.io/badge/Docker-ghcr.io-2496ED?style=flat-square&logo=docker&logoColor=white)](https://github.com/users/cyanheads/packages/container/package/protein-mcp-server) [![MCP SDK](https://img.shields.io/badge/MCP%20SDK-^1.30.0-green.svg?style=flat-square)](https://modelcontextprotocol.io/) [![npm](https://img.shields.io/npm/v/@cyanheads/protein-mcp-server?style=flat-square&logo=npm&logoColor=white)](https://www.npmjs.com/package/@cyanheads/protein-mcp-server) [![TypeScript](https://img.shields.io/badge/TypeScript-^7.0.2-3178C6.svg?style=flat-square)](https://www.typescriptlang.org/) [![Bun](https://img.shields.io/badge/Bun-v1.3.14-blueviolet.svg?style=flat-square)](https://bun.sh/)
10
+ [![Version](https://img.shields.io/badge/Version-0.5.2-blue.svg?style=flat-square)](./CHANGELOG.md) [![License](https://img.shields.io/badge/License-Apache%202.0-orange.svg?style=flat-square)](./LICENSE) [![Docker](https://img.shields.io/badge/Docker-ghcr.io-2496ED?style=flat-square&logo=docker&logoColor=white)](https://github.com/users/cyanheads/packages/container/package/protein-mcp-server) [![MCP SDK](https://img.shields.io/badge/MCP%20SDK-^2.0.0-green.svg?style=flat-square)](https://modelcontextprotocol.io/) [![npm](https://img.shields.io/npm/v/@cyanheads/protein-mcp-server?style=flat-square&logo=npm&logoColor=white)](https://www.npmjs.com/package/@cyanheads/protein-mcp-server) [![TypeScript](https://img.shields.io/badge/TypeScript-^7.0.2-3178C6.svg?style=flat-square)](https://www.typescriptlang.org/) [![Bun](https://img.shields.io/badge/Bun-v1.4.0-blueviolet.svg?style=flat-square)](https://bun.sh/)
11
11
 
12
12
  </div>
13
13
 
@@ -111,7 +111,7 @@ Profile the PDB into distributions and trends over an optional scoping query —
111
111
  - One `group_by` dimension for a breakdown, or two distinct dimensions for a cross-tab (the first nests the second); a repeated dimension is rejected
112
112
  - `interval` sets the bin width for value histograms or the period for date histograms (`year` / `month` / `quarter`)
113
113
  - Scope with a free-text `query`, `organism`, `method`, or `max_resolution`; `content_type` selects the structure universe
114
- - `bucket_limit` caps buckets per dimension; truncation is flagged in the response
114
+ - `bucket_limit` caps buckets per dimension level, not per response — a cross-tab applies it separately to the parent dimension and to the nested child inside each parent bucket, so up to `bucket_limit × (1 + bucket_limit)` buckets come back. Each level flags its own truncation, and `bucketsReturned` gives the realized total
115
115
  - Every dimension reports `missingValueCount` — matches in scope carrying no value for that attribute, which therefore fall in no bucket (a `resolution` breakdown does not cover NMR entries, and neither `method` nor `resolution` covers computed models)
116
116
 
117
117
  ---
package/changelog/0.5.x/0.5.1.md ADDED
@@ -0,0 +1,14 @@
1
+ ---
2
+ summary: "protein_analyze_collection reports the realized bucket total, and bucket_limit's per-dimension-level semantics are now stated explicitly everywhere it's described."
3
+ breaking: false
4
+ ---
5
+
6
+ # 0.5.1 — 2026-08-16
7
+
8
+ ## Added
9
+
10
+ - **`protein_analyze_collection` `bucketsReturned`**: new required enrichment field reporting the realized bucket total summed across every dimension level — the size a cross-tab returns isn't legible from `bucket_limit` alone ([#36](https://github.com/cyanheads/protein-mcp-server/issues/36)).
11
+
12
+ ## Changed
13
+
14
+ - **`bucket_limit` semantics**: the input description, the tool description, `PROTEIN_FACET_BUCKET_CAP`'s config description, and the README now state that the cap applies per dimension level, not per response — a cross-tab can return up to `bucket_limit × (1 + bucket_limit)` buckets ([#36](https://github.com/cyanheads/protein-mcp-server/issues/36)).
package/changelog/0.5.x/0.5.2.md ADDED
@@ -0,0 +1,22 @@
1
+ ---
2
+ summary: "Tool inputs are strict now — an unrecognized argument key is rejected instead of stripped — and cache hints let 2026-07-28 clients hold listings and resource reads for up to an hour; HTTP session mode is pinned to stateless."
3
+ breaking: true
4
+ security: false
5
+ ---
6
+
7
+ # 0.5.2 — 2026-08-25
8
+
9
+ ## Added
10
+
11
+ - **Cache hints**: `tools/list`, `resources/list`, `resources/templates/list`, `server/discover`, and `resources/read` all advertise `ttlMs: 3_600_000` (1 hour) at `cacheScope: 'public'` to protocol-revision-2026-07-28 clients — every listing is static per build, and the PDB/AlphaFold summary resources tolerate an hour of staleness.
12
+
13
+ ## Changed
14
+
15
+ - **Tool inputs are strict**: an unrecognized top-level argument key is now rejected by name (`-32602`) instead of silently stripped, and every tool's advertised `inputSchema` carries `additionalProperties: false` under JSON Schema 2020-12 (previously draft-07). A key nested inside an input object still strips.
16
+ - **`outputSchema` now declares the error envelope**: success fields advertise as optional and `error` is declared, so a client that validates `structuredContent` without checking `isError` no longer misreads an error result as schema-invalid.
17
+ - **HTTP session mode pinned to `stateless`**: `.env.example`'s `MCP_SESSION_MODE` is now set explicitly instead of left on the schema's `auto` default, which resolves to `stateful` — this server holds no per-session state.
18
+ - **Dependencies:**
19
+ - `@cyanheads/mcp-ts-core` ^0.11.5 → ^0.12.3 — adopts the framework's SDK v2 migration ([mcp-ts-core#305](https://github.com/cyanheads/mcp-ts-core/issues/305))
20
+ - `@modelcontextprotocol/sdk` ^1.30.0 → `@modelcontextprotocol/server` / `@modelcontextprotocol/client` ^2.0.0 (transitive via mcp-ts-core)
21
+ - Bun `1.3.14` → `1.4.0` — both `Dockerfile` stages and the `packageManager` pin; the build stage now targets `--platform=$BUILDPLATFORM` for the multi-arch image
22
+ - `@biomejs/biome` `2.5.8` → `2.5.10`, `tsc-alias` `^1.9.1` → `^1.9.2`, `vitest` `^4.1.10` → `^4.1.11` (dev)
package/dist/config/server-config.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"server-config.d.ts","sourceRoot":"","sources":["../../src/config/server-config.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAG3C,QAAA,MAAM,kBAAkB;;;;;;;;;;;;;;;iBAkFtB,CAAC;AAEH,MAAM,MAAM,YAAY,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,kBAAkB,CAAC,CAAC;AAI9D,wBAAgB,eAAe,IAAI,YAAY,CAkB9C"}
1
+ {"version":3,"file":"server-config.d.ts","sourceRoot":"","sources":["../../src/config/server-config.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAG3C,QAAA,MAAM,kBAAkB;;;;;;;;;;;;;;;iBAoFtB,CAAC;AAEH,MAAM,MAAM,YAAY,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,kBAAkB,CAAC,CAAC;AAI9D,wBAAgB,eAAe,IAAI,YAAY,CAkB9C"}
package/dist/config/server-config.js CHANGED
@@ -78,7 +78,7 @@ const ServerConfigSchema = z.object({
78
78
  .min(1)
79
79
  .max(500)
80
80
  .default(50)
81
- .describe('Default cap on buckets returned per protein_analyze_collection dimension.'),
81
+ .describe('Default cap on buckets returned per protein_analyze_collection dimension level — applied separately to a cross-tab parent dimension and to the nested child inside each of its buckets.'),
82
82
  fanoutConcurrency: z.coerce
83
83
  .number()
84
84
  .int()
package/dist/config/server-config.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"server-config.js","sourceRoot":"","sources":["../../src/config/server-config.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAC3C,OAAO,EAAE,cAAc,EAAE,MAAM,+BAA+B,CAAC;AAE/D,MAAM,kBAAkB,GAAG,CAAC,CAAC,MAAM,CAAC;IAClC,iBAAiB,EAAE,CAAC;SACjB,MAAM,EAAE;SACR,GAAG,EAAE;SACL,OAAO,CAAC,yBAAyB,CAAC;SAClC,QAAQ,CAAC,sCAAsC,CAAC;IACnD,eAAe,EAAE,CAAC;SACf,MAAM,EAAE;SACR,GAAG,EAAE;SACL,OAAO,CAAC,uBAAuB,CAAC;SAChC,QAAQ,CAAC,kDAAkD,CAAC;IAC/D,gBAAgB,EAAE,CAAC;SAChB,MAAM,EAAE;SACR,GAAG,EAAE;SACL,OAAO,CAAC,wBAAwB,CAAC;SACjC,QAAQ,CAAC,8CAA8C,CAAC;IAC3D,oBAAoB,EAAE,CAAC;SACpB,MAAM,EAAE;SACR,GAAG,EAAE;SACL,OAAO,CAAC,4BAA4B,CAAC;SACrC,QAAQ,CAAC,kEAAkE,CAAC;IAC/E,cAAc,EAAE,CAAC;SACd,MAAM,EAAE;SACR,GAAG,EAAE;SACL,OAAO,CAAC,kDAAkD,CAAC;SAC3D,QAAQ,CAAC,sDAAsD,CAAC;IACnE,gBAAgB,EAAE,CAAC;SAChB,MAAM,EAAE;SACR,GAAG,EAAE;SACL,OAAO,CAAC,6BAA6B,CAAC;SACtC,QAAQ,CAAC,4DAA4D,CAAC;IACzE,eAAe,EAAE,CAAC;SACf,MAAM,EAAE;SACR,GAAG,EAAE;SACL,OAAO,CAAC,6BAA6B,CAAC;SACtC,QAAQ,CAAC,iEAAiE,CAAC;IAC9E,cAAc,EAAE,CAAC;SACd,MAAM,EAAE;SACR,GAAG,EAAE;SACL,OAAO,CAAC,0BAA0B,CAAC;SACnC,QAAQ,CAAC,oCAAoC,CAAC;IACjD,eAAe,EAAE,CAAC;SACf,MAAM,EAAE;SACR,GAAG,EAAE;SACL,OAAO,CAAC,oCAAoC,CAAC;SAC7C,QAAQ,CAAC,qCAAqC,CAAC;IAClD,kBAAkB,EAAE,CAAC,CAAC,MAAM;SACzB,MAAM,EAAE;SACR,GAAG,EAAE;SACL,GAAG,CAAC,IAAI,CAAC;SACT,OAAO,CAAC,MAAM,CAAC;SACf,QAAQ,CACP,yGAAyG,CAC1G;IACH,WAAW,EAAE,CAAC,CAAC,MAAM;SAClB,MAAM,EAAE;SACR,GAAG,EAAE;SACL,GAAG,CAAC,CAAC,CAAC;SACN,GAAG,CAAC,GAAG,CAAC;SACR,OAAO,CAAC,EAAE,CAAC;SACX,QAAQ,CAAC,0EAA0E,CAAC;IACvF,oBAAoB,EAAE,CAAC,CAAC,MAAM;SAC3B,MAAM,EAAE;SACR,GAAG,EAAE;SACL,GAAG,CAAC,CAAC,CAAC;SACN,GAAG,CAAC,EAAE,CAAC;SACP,OAAO,CAAC,EAAE,CAAC;SACX,QAAQ,CAAC,kFAAkF,CAAC;IAC/F,cAAc,EAAE,CAAC,CAAC,MAAM;SACrB,MAAM,EAAE;SACR,GAAG,EAAE;SACL,GAAG,CAAC,CAAC,CAAC;SACN,GAAG,CAAC,GAAG,CAAC;SACR,OAAO,CAAC,EAAE,CAAC;SACX,QAAQ,CAAC,2EAA2E,CAAC;IACxF,iBAAiB,EAAE,CAAC,CAAC,MAAM;SACxB,MAAM,EAAE;SACR,GAAG,EAAE;SACL,GAAG,CAAC,CAAC,CAAC;SACN,GAAG,CAAC,EAAE,CAAC;SACP,OAAO,CAAC,CAAC,CAAC;SACV,QAAQ,CAAC,iEAAiE,CAAC;CAC/E,CAAC,CAAC;AAIH,IAAI,OAAiC,CAAC;AAEtC,MAAM,UAAU,eAAe;IAC7B,OAAO,KAAK,cAAc,CAAC,kBAAkB,EAAE;QAC7C,iBAAiB,EAAE,sBAAsB;QACzC,eAAe,EAAE,oBAAoB;QACrC,gBAAgB,EAAE,qBAAqB;QACvC,oBAAoB,EAAE,yBAAyB;QAC/C,cAAc,EAAE,kBAAkB;QAClC,gBAAgB,EAAE,oBAAoB;QACtC,eAAe,EAAE,mBAAmB;QACpC,cAAc,EAAE,kBAAkB;QAClC,eAAe,EAAE,mBAAmB;QACpC,kBAAkB,EAAE,+BAA+B;QACnD,WAAW,EAAE,uBAAuB;QACpC,oBAAoB,EAAE,gCAAgC;QACtD,cAAc,EAAE,0BAA0B;QAC1C,iBAAiB,EAAE,4BAA4B;KAChD,CAAC,CAAC;IACH,OAAO,OAAO,CAAC;AACjB,CAAC"}
1
+ {"version":3,"file":"server-config.js","sourceRoot":"","sources":["../../src/config/server-config.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAC3C,OAAO,EAAE,cAAc,EAAE,MAAM,+BAA+B,CAAC;AAE/D,MAAM,kBAAkB,GAAG,CAAC,CAAC,MAAM,CAAC;IAClC,iBAAiB,EAAE,CAAC;SACjB,MAAM,EAAE;SACR,GAAG,EAAE;SACL,OAAO,CAAC,yBAAyB,CAAC;SAClC,QAAQ,CAAC,sCAAsC,CAAC;IACnD,eAAe,EAAE,CAAC;SACf,MAAM,EAAE;SACR,GAAG,EAAE;SACL,OAAO,CAAC,uBAAuB,CAAC;SAChC,QAAQ,CAAC,kDAAkD,CAAC;IAC/D,gBAAgB,EAAE,CAAC;SAChB,MAAM,EAAE;SACR,GAAG,EAAE;SACL,OAAO,CAAC,wBAAwB,CAAC;SACjC,QAAQ,CAAC,8CAA8C,CAAC;IAC3D,oBAAoB,EAAE,CAAC;SACpB,MAAM,EAAE;SACR,GAAG,EAAE;SACL,OAAO,CAAC,4BAA4B,CAAC;SACrC,QAAQ,CAAC,kEAAkE,CAAC;IAC/E,cAAc,EAAE,CAAC;SACd,MAAM,EAAE;SACR,GAAG,EAAE;SACL,OAAO,CAAC,kDAAkD,CAAC;SAC3D,QAAQ,CAAC,sDAAsD,CAAC;IACnE,gBAAgB,EAAE,CAAC;SAChB,MAAM,EAAE;SACR,GAAG,EAAE;SACL,OAAO,CAAC,6BAA6B,CAAC;SACtC,QAAQ,CAAC,4DAA4D,CAAC;IACzE,eAAe,EAAE,CAAC;SACf,MAAM,EAAE;SACR,GAAG,EAAE;SACL,OAAO,CAAC,6BAA6B,CAAC;SACtC,QAAQ,CAAC,iEAAiE,CAAC;IAC9E,cAAc,EAAE,CAAC;SACd,MAAM,EAAE;SACR,GAAG,EAAE;SACL,OAAO,CAAC,0BAA0B,CAAC;SACnC,QAAQ,CAAC,oCAAoC,CAAC;IACjD,eAAe,EAAE,CAAC;SACf,MAAM,EAAE;SACR,GAAG,EAAE;SACL,OAAO,CAAC,oCAAoC,CAAC;SAC7C,QAAQ,CAAC,qCAAqC,CAAC;IAClD,kBAAkB,EAAE,CAAC,CAAC,MAAM;SACzB,MAAM,EAAE;SACR,GAAG,EAAE;SACL,GAAG,CAAC,IAAI,CAAC;SACT,OAAO,CAAC,MAAM,CAAC;SACf,QAAQ,CACP,yGAAyG,CAC1G;IACH,WAAW,EAAE,CAAC,CAAC,MAAM;SAClB,MAAM,EAAE;SACR,GAAG,EAAE;SACL,GAAG,CAAC,CAAC,CAAC;SACN,GAAG,CAAC,GAAG,CAAC;SACR,OAAO,CAAC,EAAE,CAAC;SACX,QAAQ,CAAC,0EAA0E,CAAC;IACvF,oBAAoB,EAAE,CAAC,CAAC,MAAM;SAC3B,MAAM,EAAE;SACR,GAAG,EAAE;SACL,GAAG,CAAC,CAAC,CAAC;SACN,GAAG,CAAC,EAAE,CAAC;SACP,OAAO,CAAC,EAAE,CAAC;SACX,QAAQ,CAAC,kFAAkF,CAAC;IAC/F,cAAc,EAAE,CAAC,CAAC,MAAM;SACrB,MAAM,EAAE;SACR,GAAG,EAAE;SACL,GAAG,CAAC,CAAC,CAAC;SACN,GAAG,CAAC,GAAG,CAAC;SACR,OAAO,CAAC,EAAE,CAAC;SACX,QAAQ,CACP,yLAAyL,CAC1L;IACH,iBAAiB,EAAE,CAAC,CAAC,MAAM;SACxB,MAAM,EAAE;SACR,GAAG,EAAE;SACL,GAAG,CAAC,CAAC,CAAC;SACN,GAAG,CAAC,EAAE,CAAC;SACP,OAAO,CAAC,CAAC,CAAC;SACV,QAAQ,CAAC,iEAAiE,CAAC;CAC/E,CAAC,CAAC;AAIH,IAAI,OAAiC,CAAC;AAEtC,MAAM,UAAU,eAAe;IAC7B,OAAO,KAAK,cAAc,CAAC,kBAAkB,EAAE;QAC7C,iBAAiB,EAAE,sBAAsB;QACzC,eAAe,EAAE,oBAAoB;QACrC,gBAAgB,EAAE,qBAAqB;QACvC,oBAAoB,EAAE,yBAAyB;QAC/C,cAAc,EAAE,kBAAkB;QAClC,gBAAgB,EAAE,oBAAoB;QACtC,eAAe,EAAE,mBAAmB;QACpC,cAAc,EAAE,kBAAkB;QAClC,eAAe,EAAE,mBAAmB;QACpC,kBAAkB,EAAE,+BAA+B;QACnD,WAAW,EAAE,uBAAuB;QACpC,oBAAoB,EAAE,gCAAgC;QACtD,cAAc,EAAE,0BAA0B;QAC1C,iBAAiB,EAAE,4BAA4B;KAChD,CAAC,CAAC;IACH,OAAO,OAAO,CAAC;AACjB,CAAC"}
package/dist/index.js CHANGED
@@ -31,6 +31,21 @@ await createApp({
31
31
  prompts: [],
32
32
  // Public, keyless data server — serve the full inventory to unauthenticated callers.
33
33
  landing: { requireAuth: false },
34
+ /**
35
+ * Cache hints for protocol revision 2026-07-28. Every listing is static per
36
+ * build and identical for every caller — no auth-gated definitions, no
37
+ * per-tenant filtering — so a shared cache may hold them. `resources/read`
38
+ * serves PDB and AlphaFold summaries, whose upstreams publish on a weekly
39
+ * (PDB) and per-release (AlphaFold) cadence; an hour of staleness sits well
40
+ * inside both. 2025-era responses are unaffected either way.
41
+ */
42
+ cacheHints: {
43
+ 'tools/list': { ttlMs: 3_600_000, cacheScope: 'public' },
44
+ 'resources/list': { ttlMs: 3_600_000, cacheScope: 'public' },
45
+ 'resources/templates/list': { ttlMs: 3_600_000, cacheScope: 'public' },
46
+ 'server/discover': { ttlMs: 3_600_000, cacheScope: 'public' },
47
+ 'resources/read': { ttlMs: 3_600_000, cacheScope: 'public' },
48
+ },
34
49
  instructions: 'protein-mcp-server federates experimental (PDB) and predicted (AlphaFold) protein structures: search structures by text, sequence, or organism/method/resolution (protein_search_structures); fetch metadata and coordinate URLs for PDB IDs or UniProt accessions (protein_get_structure); find sequence or fold homologs via mmseqs2 or Foldseek (protein_find_similar); resolve ligands and map binding-site residues (protein_track_ligands); align 2–10 structures with TM-align or jFATCAT (protein_compare_structures); profile the PDB with server-side facet distributions and trends (protein_analyze_collection); and pull UniProt features plus InterPro domains and GO terms (protein_get_annotations).',
35
50
  setup(core) {
36
51
  const serverConfig = getServerConfig();
package/dist/index.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";AACA;;;;;GAKG;AAEH,OAAO,EAAE,SAAS,EAAE,MAAM,wBAAwB,CAAC;AACnD,OAAO,EAAE,eAAe,EAAE,MAAM,2BAA2B,CAAC;AAC5D,OAAO,EAAE,iBAAiB,EAAE,kBAAkB,EAAE,MAAM,6CAA6C,CAAC;AACpG,OAAO,EACL,iBAAiB,EACjB,iBAAiB,EACjB,WAAW,EACX,cAAc,EACd,YAAY,EACZ,gBAAgB,EAChB,YAAY,GACb,MAAM,yCAAyC,CAAC;AACjD,OAAO,EAAE,oBAAoB,EAAE,MAAM,2CAA2C,CAAC;AACjF,OAAO,EAAE,oBAAoB,EAAE,MAAM,2CAA2C,CAAC;AACjF,OAAO,EAAE,kBAAkB,EAAE,MAAM,uCAAuC,CAAC;AAC3E,OAAO,EAAE,mBAAmB,EAAE,MAAM,yCAAyC,CAAC;AAC9E,OAAO,EAAE,eAAe,EAAE,MAAM,iCAAiC,CAAC;AAClE,OAAO,EAAE,kBAAkB,EAAE,MAAM,uCAAuC,CAAC;AAE3E,MAAM,SAAS,CAAC;IACd,IAAI,EAAE,oBAAoB;IAC1B,KAAK,EAAE,oBAAoB;IAC3B,KAAK,EAAE;QACL,gBAAgB;QAChB,YAAY;QACZ,WAAW;QACX,YAAY;QACZ,iBAAiB;QACjB,iBAAiB;QACjB,cAAc;KACf;IACD,SAAS,EAAE,CAAC,kBAAkB,EAAE,iBAAiB,CAAC;IAClD,OAAO,EAAE,EAAE;IACX,qFAAqF;IACrF,OAAO,EAAE,EAAE,WAAW,EAAE,KAAK,EAAE;IAC/B,YAAY,EACV,srBAAsrB;IACxrB,KAAK,CAAC,IAAI;QACR,MAAM,YAAY,GAAG,eAAe,EAAE,CAAC;QACvC,eAAe,CAAC,IAAI,CAAC,MAAM,EAAE,IAAI,CAAC,OAAO,EAAE,YAAY,CAAC,CAAC;QACzD,oBAAoB,CAAC,IAAI,CAAC,MAAM,EAAE,IAAI,CAAC,OAAO,EAAE,YAAY,CAAC,CAAC;QAC9D,kBAAkB,CAAC,IAAI,CAAC,MAAM,EAAE,IAAI,CAAC,OAAO,EAAE,YAAY,CAAC,CAAC;QAC5D,kBAAkB,CAAC,IAAI,CAAC,MAAM,EAAE,IAAI,CAAC,OAAO,EAAE,YAAY,CAAC,CAAC;QAC5D,oBAAoB,CAAC,IAAI,CAAC,MAAM,EAAE,IAAI,CAAC,OAAO,EAAE,YAAY,CAAC,CAAC;QAC9D,mBAAmB,CAAC,IAAI,CAAC,MAAM,EAAE,IAAI,CAAC,OAAO,EAAE,YAAY,CAAC,CAAC;IAC/D,CAAC;CACF,CAAC,CAAC"}
1
+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";AACA;;;;;GAKG;AAEH,OAAO,EAAE,SAAS,EAAE,MAAM,wBAAwB,CAAC;AACnD,OAAO,EAAE,eAAe,EAAE,MAAM,2BAA2B,CAAC;AAC5D,OAAO,EAAE,iBAAiB,EAAE,kBAAkB,EAAE,MAAM,6CAA6C,CAAC;AACpG,OAAO,EACL,iBAAiB,EACjB,iBAAiB,EACjB,WAAW,EACX,cAAc,EACd,YAAY,EACZ,gBAAgB,EAChB,YAAY,GACb,MAAM,yCAAyC,CAAC;AACjD,OAAO,EAAE,oBAAoB,EAAE,MAAM,2CAA2C,CAAC;AACjF,OAAO,EAAE,oBAAoB,EAAE,MAAM,2CAA2C,CAAC;AACjF,OAAO,EAAE,kBAAkB,EAAE,MAAM,uCAAuC,CAAC;AAC3E,OAAO,EAAE,mBAAmB,EAAE,MAAM,yCAAyC,CAAC;AAC9E,OAAO,EAAE,eAAe,EAAE,MAAM,iCAAiC,CAAC;AAClE,OAAO,EAAE,kBAAkB,EAAE,MAAM,uCAAuC,CAAC;AAE3E,MAAM,SAAS,CAAC;IACd,IAAI,EAAE,oBAAoB;IAC1B,KAAK,EAAE,oBAAoB;IAC3B,KAAK,EAAE;QACL,gBAAgB;QAChB,YAAY;QACZ,WAAW;QACX,YAAY;QACZ,iBAAiB;QACjB,iBAAiB;QACjB,cAAc;KACf;IACD,SAAS,EAAE,CAAC,kBAAkB,EAAE,iBAAiB,CAAC;IAClD,OAAO,EAAE,EAAE;IACX,qFAAqF;IACrF,OAAO,EAAE,EAAE,WAAW,EAAE,KAAK,EAAE;IAC/B;;;;;;;OAOG;IACH,UAAU,EAAE;QACV,YAAY,EAAE,EAAE,KAAK,EAAE,SAAS,EAAE,UAAU,EAAE,QAAQ,EAAE;QACxD,gBAAgB,EAAE,EAAE,KAAK,EAAE,SAAS,EAAE,UAAU,EAAE,QAAQ,EAAE;QAC5D,0BAA0B,EAAE,EAAE,KAAK,EAAE,SAAS,EAAE,UAAU,EAAE,QAAQ,EAAE;QACtE,iBAAiB,EAAE,EAAE,KAAK,EAAE,SAAS,EAAE,UAAU,EAAE,QAAQ,EAAE;QAC7D,gBAAgB,EAAE,EAAE,KAAK,EAAE,SAAS,EAAE,UAAU,EAAE,QAAQ,EAAE;KAC7D;IACD,YAAY,EACV,srBAAsrB;IACxrB,KAAK,CAAC,IAAI;QACR,MAAM,YAAY,GAAG,eAAe,EAAE,CAAC;QACvC,eAAe,CAAC,IAAI,CAAC,MAAM,EAAE,IAAI,CAAC,OAAO,EAAE,YAAY,CAAC,CAAC;QACzD,oBAAoB,CAAC,IAAI,CAAC,MAAM,EAAE,IAAI,CAAC,OAAO,EAAE,YAAY,CAAC,CAAC;QAC9D,kBAAkB,CAAC,IAAI,CAAC,MAAM,EAAE,IAAI,CAAC,OAAO,EAAE,YAAY,CAAC,CAAC;QAC5D,kBAAkB,CAAC,IAAI,CAAC,MAAM,EAAE,IAAI,CAAC,OAAO,EAAE,YAAY,CAAC,CAAC;QAC5D,oBAAoB,CAAC,IAAI,CAAC,MAAM,EAAE,IAAI,CAAC,OAAO,EAAE,YAAY,CAAC,CAAC;QAC9D,mBAAmB,CAAC,IAAI,CAAC,MAAM,EAAE,IAAI,CAAC,OAAO,EAAE,YAAY,CAAC,CAAC;IAC/D,CAAC;CACF,CAAC,CAAC"}
package/dist/mcp-server/tools/definitions/_schemas.d.ts CHANGED
@@ -68,6 +68,18 @@ export type FlatFacetDimensionOutput = z.infer<typeof flatFacetDimensionSchema>;
68
68
  * top-level dimension, and the parent bucket's count for a nested one.
69
69
  */
70
70
  export declare function toFacetOutput(facet: FacetDimension, cap: number, total: number): FacetDimensionOutput;
71
+ /**
72
+ * Buckets the response actually carries, summed over every dimension position:
73
+ * each dimension's own bucket list plus the nested cross-tab list under each of
74
+ * its buckets.
75
+ *
76
+ * Counted after {@link toFacetOutput} has sliced each position to the cap, so it
77
+ * is the realized size rather than what upstream aggregated. The cap bounds each
78
+ * position independently — a cross-tab reaches `cap × (1 + cap)` buckets — and
79
+ * the per-position `truncated` flags do not compose into that size, so a caller
80
+ * cannot derive it from the levels.
81
+ */
82
+ export declare function countBuckets(facets: FacetDimensionOutput[]): number;
71
83
  /** Render a list of facet dimensions to markdown lines for `format()` parity. */
72
84
  export declare function renderFacets(facets: FacetDimensionOutput[]): string[];
73
85
  /**
package/dist/mcp-server/tools/definitions/_schemas.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"_schemas.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/_schemas.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;GAUG;AAEH,OAAO,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAC3C,OAAO,KAAK,EAAe,cAAc,EAAE,MAAM,0BAA0B,CAAC;AAE5E;;;;;GAKG;AACH,eAAO,MAAM,mBAAmB;;;;CAIuC,CAAC;AAkDxE;;;GAGG;AACH,eAAO,MAAM,wBAAwB;;;;;;;;;;iBAgBwB,CAAC;AAE9D,qFAAqF;AACrF,eAAO,MAAM,oBAAoB;;;;;;;;;;;;;;;;;;;;;iBAI0D,CAAC;AAE5F,MAAM,MAAM,oBAAoB,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,oBAAoB,CAAC,CAAC;AAExE,MAAM,MAAM,wBAAwB,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,wBAAwB,CAAC,CAAC;AAgChF;;;;GAIG;AACH,wBAAgB,aAAa,CAC3B,KAAK,EAAE,cAAc,EACrB,GAAG,EAAE,MAAM,EACX,KAAK,EAAE,MAAM,GACZ,oBAAoB,CAwBtB;AA0CD,iFAAiF;AACjF,wBAAgB,YAAY,CAAC,MAAM,EAAE,oBAAoB,EAAE,GAAG,MAAM,EAAE,CAoBrE;AAuDD;;;;;;;GAOG;AACH,wBAAgB,eAAe,CAAC,MAAM,EAAE,oBAAoB,EAAE,EAAE,KAAK,EAAE,MAAM,GAAG,MAAM,EAAE,CAcvF;AAED,sFAAsF;AACtF,eAAO,MAAM,iBAAiB;;;;;iBAWmD,CAAC;AAElF,MAAM,MAAM,iBAAiB,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,iBAAiB,CAAC,CAAC;AAElE,gGAAgG;AAChG,wBAAgB,iBAAiB,CAAC,YAAY,EAAE,iBAAiB,EAAE,GAAG,MAAM,EAAE,CAM7E"}
1
+ {"version":3,"file":"_schemas.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/_schemas.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;GAUG;AAEH,OAAO,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAC3C,OAAO,KAAK,EAAe,cAAc,EAAE,MAAM,0BAA0B,CAAC;AAE5E;;;;;GAKG;AACH,eAAO,MAAM,mBAAmB;;;;CAIuC,CAAC;AAkDxE;;;GAGG;AACH,eAAO,MAAM,wBAAwB;;;;;;;;;;iBAgBwB,CAAC;AAE9D,qFAAqF;AACrF,eAAO,MAAM,oBAAoB;;;;;;;;;;;;;;;;;;;;;iBAI0D,CAAC;AAE5F,MAAM,MAAM,oBAAoB,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,oBAAoB,CAAC,CAAC;AAExE,MAAM,MAAM,wBAAwB,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,wBAAwB,CAAC,CAAC;AAgChF;;;;GAIG;AACH,wBAAgB,aAAa,CAC3B,KAAK,EAAE,cAAc,EACrB,GAAG,EAAE,MAAM,EACX,KAAK,EAAE,MAAM,GACZ,oBAAoB,CAwBtB;AAED;;;;;;;;;;GAUG;AACH,wBAAgB,YAAY,CAAC,MAAM,EAAE,oBAAoB,EAAE,GAAG,MAAM,CAOnE;AA0CD,iFAAiF;AACjF,wBAAgB,YAAY,CAAC,MAAM,EAAE,oBAAoB,EAAE,GAAG,MAAM,EAAE,CAoBrE;AAuDD;;;;;;;GAOG;AACH,wBAAgB,eAAe,CAAC,MAAM,EAAE,oBAAoB,EAAE,EAAE,KAAK,EAAE,MAAM,GAAG,MAAM,EAAE,CAcvF;AAED,sFAAsF;AACtF,eAAO,MAAM,iBAAiB;;;;;iBAWmD,CAAC;AAElF,MAAM,MAAM,iBAAiB,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,iBAAiB,CAAC,CAAC;AAElE,gGAAgG;AAChG,wBAAgB,iBAAiB,CAAC,YAAY,EAAE,iBAAiB,EAAE,GAAG,MAAM,EAAE,CAM7E"}
package/dist/mcp-server/tools/definitions/_schemas.js CHANGED
@@ -139,6 +139,26 @@ export function toFacetOutput(facet, cap, total) {
139
139
  missingValueCount: missingValueCount(facet.buckets, total),
140
140
  };
141
141
  }
142
+ /**
143
+ * Buckets the response actually carries, summed over every dimension position:
144
+ * each dimension's own bucket list plus the nested cross-tab list under each of
145
+ * its buckets.
146
+ *
147
+ * Counted after {@link toFacetOutput} has sliced each position to the cap, so it
148
+ * is the realized size rather than what upstream aggregated. The cap bounds each
149
+ * position independently — a cross-tab reaches `cap × (1 + cap)` buckets — and
150
+ * the per-position `truncated` flags do not compose into that size, so a caller
151
+ * cannot derive it from the levels.
152
+ */
153
+ export function countBuckets(facets) {
154
+ let count = 0;
155
+ for (const f of facets) {
156
+ count += f.buckets.length;
157
+ for (const b of f.buckets)
158
+ count += b.child?.buckets.length ?? 0;
159
+ }
160
+ return count;
161
+ }
142
162
  /**
143
163
  * Render one bucket's `label: count` line, annotating numeric histogram buckets
144
164
  * with their explicit half-open `[rangeFrom, rangeTo)` bin so the bare boundary
package/dist/mcp-server/tools/definitions/_schemas.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"_schemas.js","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/_schemas.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;GAUG;AAEH,OAAO,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAG3C;;;;;GAKG;AACH,MAAM,CAAC,MAAM,mBAAmB,GAAG;IACjC,YAAY,EAAE,CAAC,cAAc,CAAC;IAC9B,SAAS,EAAE,CAAC,eAAe,CAAC;IAC5B,GAAG,EAAE,CAAC,cAAc,EAAE,eAAe,CAAC;CAC+B,CAAC;AAExE,kCAAkC;AAClC,MAAM,gBAAgB,GAAG,CAAC;KACvB,MAAM,CAAC;IACN,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,wDAAwD,CAAC;IACpF,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,kCAAkC,CAAC;IAC9D,SAAS,EAAE,CAAC;SACT,MAAM,EAAE;SACR,QAAQ,EAAE;SACV,QAAQ,CACP,4JAA4J,CAC7J;IACH,OAAO,EAAE,CAAC;SACP,MAAM,EAAE;SACR,QAAQ,EAAE;SACV,QAAQ,CACP,uJAAuJ,CACxJ;CACJ,CAAC;KACD,QAAQ,CAAC,yDAAyD,CAAC,CAAC;AAEvE,kEAAkE;AAClE,MAAM,oBAAoB,GAAG,CAAC;KAC3B,MAAM,CAAC;IACN,SAAS,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,wBAAwB,CAAC;IACxD,OAAO,EAAE,CAAC,CAAC,KAAK,CAAC,gBAAgB,CAAC,CAAC,QAAQ,CAAC,0CAA0C,CAAC;IACvF,SAAS,EAAE,CAAC;SACT,OAAO,EAAE;SACT,QAAQ,EAAE;SACV,QAAQ,CAAC,iFAAiF,CAAC;IAC9F,iBAAiB,EAAE,CAAC;SACjB,MAAM,EAAE;SACR,QAAQ,CACP,kLAAkL,CACnL;CACJ,CAAC;KACD,QAAQ,CAAC,sDAAsD,CAAC,CAAC;AAEpE,kFAAkF;AAClF,MAAM,YAAY,GAAG,gBAAgB;KAClC,MAAM,CAAC;IACN,KAAK,EAAE,oBAAoB;SACxB,QAAQ,EAAE;SACV,QAAQ,CACP,ySAAyS,CAC1S;CACJ,CAAC;KACD,QAAQ,CAAC,gFAAgF,CAAC,CAAC;AAE9F;;;GAGG;AACH,MAAM,CAAC,MAAM,wBAAwB,GAAG,CAAC;KACtC,MAAM,CAAC;IACN,SAAS,EAAE,CAAC;SACT,MAAM,EAAE;SACR,QAAQ,CAAC,gEAAgE,CAAC;IAC7E,OAAO,EAAE,CAAC,CAAC,KAAK,CAAC,gBAAgB,CAAC,CAAC,QAAQ,CAAC,kDAAkD,CAAC;IAC/F,SAAS,EAAE,CAAC;SACT,OAAO,EAAE;SACT,QAAQ,EAAE;SACV,QAAQ,CAAC,kEAAkE,CAAC;IAC/E,iBAAiB,EAAE,CAAC;SACjB,MAAM,EAAE;SACR,QAAQ,CACP,qdAAqd,CACtd;CACJ,CAAC;KACD,QAAQ,CAAC,gDAAgD,CAAC,CAAC;AAE9D,qFAAqF;AACrF,MAAM,CAAC,MAAM,oBAAoB,GAAG,wBAAwB;KACzD,MAAM,CAAC;IACN,OAAO,EAAE,CAAC,CAAC,KAAK,CAAC,YAAY,CAAC,CAAC,QAAQ,CAAC,kDAAkD,CAAC;CAC5F,CAAC;KACD,QAAQ,CAAC,8EAA8E,CAAC,CAAC;AAM5F,2EAA2E;AAC3E,SAAS,SAAS,CAChB,CAAI;IAEJ,OAAO,CAAC,CAAC,SAAS,KAAK,SAAS,IAAI,CAAC,CAAC,OAAO,KAAK,SAAS;QACzD,CAAC,CAAC,EAAE,SAAS,EAAE,CAAC,CAAC,SAAS,EAAE,OAAO,EAAE,CAAC,CAAC,OAAO,EAAE;QAChD,CAAC,CAAC,EAAE,CAAC;AACT,CAAC;AAED;;;;;;;;;;;;;;;;GAgBG;AACH,SAAS,iBAAiB,CAAC,OAAqC,EAAE,KAAa;IAC7E,OAAO,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,KAAK,GAAG,OAAO,CAAC,MAAM,CAAC,CAAC,GAAG,EAAE,CAAC,EAAE,EAAE,CAAC,GAAG,GAAG,CAAC,CAAC,KAAK,EAAE,CAAC,CAAC,CAAC,CAAC;AAC3E,CAAC;AAED;;;;GAIG;AACH,MAAM,UAAU,aAAa,CAC3B,KAAqB,EACrB,GAAW,EACX,KAAa;IAEb,MAAM,SAAS,GAAG,KAAK,CAAC,OAAO,CAAC,MAAM,GAAG,GAAG,CAAC;IAC7C,OAAO;QACL,SAAS,EAAE,KAAK,CAAC,SAAS;QAC1B,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC;YAC/C,KAAK,EAAE,CAAC,CAAC,KAAK;YACd,KAAK,EAAE,CAAC,CAAC,KAAK;YACd,GAAG,SAAS,CAAC,CAAC,CAAC;YACf,GAAG,CAAC,CAAC,CAAC,KAAK;gBACT,CAAC,CAAC;oBACE,KAAK,EAAE;wBACL,SAAS,EAAE,CAAC,CAAC,KAAK,CAAC,SAAS;wBAC5B,OAAO,EAAE,CAAC,CAAC,KAAK,CAAC,OAAO;6BACrB,KAAK,CAAC,CAAC,EAAE,GAAG,CAAC;6BACb,GAAG,CAAC,CAAC,EAAE,EAAE,EAAE,CAAC,CAAC,EAAE,KAAK,EAAE,EAAE,CAAC,KAAK,EAAE,KAAK,EAAE,EAAE,CAAC,KAAK,EAAE,GAAG,SAAS,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC;wBACxE,GAAG,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,MAAM,GAAG,GAAG,CAAC,CAAC,CAAC,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;wBAC5D,iBAAiB,EAAE,iBAAiB,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,EAAE,CAAC,CAAC,KAAK,CAAC;qBAC/D;iBACF;gBACH,CAAC,CAAC,EAAE,CAAC;SACR,CAAC,CAAC;QACH,GAAG,CAAC,SAAS,CAAC,CAAC,CAAC,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;QACzC,iBAAiB,EAAE,iBAAiB,CAAC,KAAK,CAAC,OAAO,EAAE,KAAK,CAAC;KAC3D,CAAC;AACJ,CAAC;AAED;;;;GAIG;AACH,SAAS,YAAY,CAAC,CAKrB;IACC,MAAM,KAAK,GACT,CAAC,CAAC,SAAS,KAAK,SAAS,IAAI,CAAC,CAAC,OAAO,KAAK,SAAS,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,SAAS,IAAI,CAAC,CAAC,OAAO,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC;IAC/F,OAAO,GAAG,CAAC,CAAC,KAAK,GAAG,KAAK,KAAK,CAAC,CAAC,KAAK,EAAE,CAAC;AAC1C,CAAC;AAED;;;;;GAKG;AACH,MAAM,oBAAoB,GAAG,oDAAoD,CAAC;AAElF,2GAA2G;AAC3G,MAAM,0BAA0B,GAAG,yBAAyB,CAAC;AAE7D;;;;GAIG;AACH,SAAS,cAAc,CAAC,CAAiE;IACvF,MAAM,KAAK,GAAG;QACZ,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC,EAAE;QAC9B,CAAC,CAAC,iBAAiB,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,iBAAiB,gBAAgB,CAAC,CAAC,CAAC,EAAE;KACtE,CAAC,MAAM,CAAC,OAAO,CAAC,CAAC;IAClB,OAAO,KAAK,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,KAAK,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC;AAC1D,CAAC;AAED,iFAAiF;AACjF,MAAM,UAAU,YAAY,CAAC,MAA8B;IACzD,MAAM,KAAK,GAAa,EAAE,CAAC;IAC3B,KAAK,MAAM,CAAC,IAAI,MAAM,EAAE,CAAC;QACvB,KAAK,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,SAAS,KAAK,cAAc,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC;QACvD,IAAI,CAAC,CAAC,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YAC3B,KAAK,CAAC,IAAI,CAAC,oBAAoB,CAAC,CAAC;YACjC,SAAS;QACX,CAAC;QACD,KAAK,MAAM,CAAC,IAAI,CAAC,CAAC,OAAO,EAAE,CAAC;YAC1B,KAAK,CAAC,IAAI,CAAC,KAAK,YAAY,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC;YACnC,MAAM,CAAC,GAAG,CAAC,CAAC,KAAK,CAAC;YAClB,IAAI,CAAC,CAAC;gBAAE,SAAS;YACjB,MAAM,KAAK,GACT,CAAC,CAAC,OAAO,CAAC,MAAM,KAAK,CAAC;gBACpB,CAAC,CAAC,0BAA0B;gBAC5B,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,GAAG,CAAC,YAAY,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;YAC7C,KAAK,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,SAAS,MAAM,KAAK,GAAG,cAAc,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC;QAClE,CAAC;IACH,CAAC;IACD,OAAO,KAAK,CAAC;AACf,CAAC;AAED;;;;;;;;;;;GAWG;AACH,MAAM,qBAAqB,GAAG,IAAI,CAAC;AAUnC;;;;;;GAMG;AACH,SAAS,iBAAiB,CAAC,MAA8B,EAAE,KAAa;IACtE,MAAM,SAAS,GAAuB,EAAE,CAAC;IACzC,KAAK,MAAM,CAAC,IAAI,MAAM,EAAE,CAAC;QACvB,SAAS,CAAC,IAAI,CAAC;YACb,SAAS,EAAE,CAAC,CAAC,SAAS;YACtB,OAAO,EAAE,CAAC,CAAC,iBAAiB;YAC5B,KAAK,EAAE,KAAK;YACZ,WAAW,EAAE,CAAC,CAAC,OAAO,CAAC,MAAM;SAC9B,CAAC,CAAC;QACH,MAAM,QAAQ,GAAG,IAAI,GAAG,EAA+C,CAAC;QACxE,KAAK,MAAM,CAAC,IAAI,CAAC,CAAC,OAAO,EAAE,CAAC;YAC1B,MAAM,CAAC,GAAG,CAAC,CAAC,KAAK,CAAC;YAClB,IAAI,CAAC,CAAC;gBAAE,SAAS;YACjB,MAAM,GAAG,GAAG,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,SAAS,CAAC,IAAI,EAAE,OAAO,EAAE,CAAC,EAAE,KAAK,EAAE,CAAC,EAAE,WAAW,EAAE,CAAC,EAAE,CAAC;YAClF,GAAG,CAAC,OAAO,IAAI,CAAC,CAAC,iBAAiB,CAAC;YACnC,GAAG,CAAC,KAAK,IAAI,CAAC,CAAC,KAAK,CAAC;YACrB,GAAG,CAAC,WAAW,IAAI,CAAC,CAAC,OAAO,CAAC,MAAM,CAAC;YACpC,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,SAAS,EAAE,GAAG,CAAC,CAAC;QACjC,CAAC;QACD,KAAK,MAAM,CAAC,SAAS,EAAE,GAAG,CAAC,IAAI,QAAQ;YAAE,SAAS,CAAC,IAAI,CAAC,EAAE,SAAS,EAAE,GAAG,GAAG,EAAE,CAAC,CAAC;IACjF,CAAC;IACD,OAAO,SAAS,CAAC;AACnB,CAAC;AAED;;;;;;;GAOG;AACH,MAAM,UAAU,eAAe,CAAC,MAA8B,EAAE,KAAa;IAC3E,MAAM,IAAI,GAAG,IAAI,GAAG,EAAU,CAAC;IAC/B,MAAM,OAAO,GAAa,EAAE,CAAC;IAC7B,KAAK,MAAM,CAAC,IAAI,iBAAiB,CAAC,MAAM,EAAE,KAAK,CAAC,EAAE,CAAC;QACjD,IAAI,CAAC,CAAC,KAAK,IAAI,CAAC,IAAI,CAAC,CAAC,WAAW,KAAK,CAAC;YAAE,SAAS;QAClD,IAAI,CAAC,CAAC,OAAO,GAAG,CAAC,CAAC,KAAK,GAAG,qBAAqB;YAAE,SAAS;QAC1D,IAAI,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,SAAS,CAAC;YAAE,SAAS;QACpC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC;QACtB,MAAM,GAAG,GAAG,CAAC,CAAC,CAAC,CAAC,OAAO,GAAG,CAAC,CAAC,KAAK,CAAC,GAAG,GAAG,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC;QACrD,OAAO,CAAC,IAAI,CACV,GAAG,CAAC,CAAC,SAAS,kBAAkB,CAAC,CAAC,KAAK,GAAG,CAAC,CAAC,OAAO,OAAO,CAAC,CAAC,KAAK,uBAAuB,CAAC,CAAC,OAAO,KAAK,GAAG,eAAe,CAAC,CAAC,SAAS,+BAA+B,CACnK,CAAC;IACJ,CAAC;IACD,OAAO,OAAO,CAAC;AACjB,CAAC;AAED,sFAAsF;AACtF,MAAM,CAAC,MAAM,iBAAiB,GAAG,CAAC;KAC/B,MAAM,CAAC;IACN,MAAM,EAAE,CAAC;SACN,MAAM,EAAE;SACR,QAAQ,CACP,uLAAuL,CACxL;IACH,OAAO,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,+DAA+D,CAAC;IAC7F,QAAQ,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,mDAAmD,CAAC;IAClF,QAAQ,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,iCAAiC,CAAC;CACjE,CAAC;KACD,QAAQ,CAAC,oEAAoE,CAAC,CAAC;AAIlF,gGAAgG;AAChG,MAAM,UAAU,iBAAiB,CAAC,YAAiC;IACjE,MAAM,KAAK,GAAa,EAAE,CAAC;IAC3B,KAAK,MAAM,CAAC,IAAI,YAAY,EAAE,CAAC;QAC7B,KAAK,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,MAAM,OAAO,CAAC,CAAC,OAAO,OAAO,CAAC,CAAC,QAAQ,MAAM,CAAC,CAAC,QAAQ,EAAE,CAAC,CAAC;IACjF,CAAC;IACD,OAAO,KAAK,CAAC;AACf,CAAC"}
1
+ {"version":3,"file":"_schemas.js","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/_schemas.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;GAUG;AAEH,OAAO,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAG3C;;;;;GAKG;AACH,MAAM,CAAC,MAAM,mBAAmB,GAAG;IACjC,YAAY,EAAE,CAAC,cAAc,CAAC;IAC9B,SAAS,EAAE,CAAC,eAAe,CAAC;IAC5B,GAAG,EAAE,CAAC,cAAc,EAAE,eAAe,CAAC;CAC+B,CAAC;AAExE,kCAAkC;AAClC,MAAM,gBAAgB,GAAG,CAAC;KACvB,MAAM,CAAC;IACN,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,wDAAwD,CAAC;IACpF,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,kCAAkC,CAAC;IAC9D,SAAS,EAAE,CAAC;SACT,MAAM,EAAE;SACR,QAAQ,EAAE;SACV,QAAQ,CACP,4JAA4J,CAC7J;IACH,OAAO,EAAE,CAAC;SACP,MAAM,EAAE;SACR,QAAQ,EAAE;SACV,QAAQ,CACP,uJAAuJ,CACxJ;CACJ,CAAC;KACD,QAAQ,CAAC,yDAAyD,CAAC,CAAC;AAEvE,kEAAkE;AAClE,MAAM,oBAAoB,GAAG,CAAC;KAC3B,MAAM,CAAC;IACN,SAAS,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,wBAAwB,CAAC;IACxD,OAAO,EAAE,CAAC,CAAC,KAAK,CAAC,gBAAgB,CAAC,CAAC,QAAQ,CAAC,0CAA0C,CAAC;IACvF,SAAS,EAAE,CAAC;SACT,OAAO,EAAE;SACT,QAAQ,EAAE;SACV,QAAQ,CAAC,iFAAiF,CAAC;IAC9F,iBAAiB,EAAE,CAAC;SACjB,MAAM,EAAE;SACR,QAAQ,CACP,kLAAkL,CACnL;CACJ,CAAC;KACD,QAAQ,CAAC,sDAAsD,CAAC,CAAC;AAEpE,kFAAkF;AAClF,MAAM,YAAY,GAAG,gBAAgB;KAClC,MAAM,CAAC;IACN,KAAK,EAAE,oBAAoB;SACxB,QAAQ,EAAE;SACV,QAAQ,CACP,ySAAyS,CAC1S;CACJ,CAAC;KACD,QAAQ,CAAC,gFAAgF,CAAC,CAAC;AAE9F;;;GAGG;AACH,MAAM,CAAC,MAAM,wBAAwB,GAAG,CAAC;KACtC,MAAM,CAAC;IACN,SAAS,EAAE,CAAC;SACT,MAAM,EAAE;SACR,QAAQ,CAAC,gEAAgE,CAAC;IAC7E,OAAO,EAAE,CAAC,CAAC,KAAK,CAAC,gBAAgB,CAAC,CAAC,QAAQ,CAAC,kDAAkD,CAAC;IAC/F,SAAS,EAAE,CAAC;SACT,OAAO,EAAE;SACT,QAAQ,EAAE;SACV,QAAQ,CAAC,kEAAkE,CAAC;IAC/E,iBAAiB,EAAE,CAAC;SACjB,MAAM,EAAE;SACR,QAAQ,CACP,qdAAqd,CACtd;CACJ,CAAC;KACD,QAAQ,CAAC,gDAAgD,CAAC,CAAC;AAE9D,qFAAqF;AACrF,MAAM,CAAC,MAAM,oBAAoB,GAAG,wBAAwB;KACzD,MAAM,CAAC;IACN,OAAO,EAAE,CAAC,CAAC,KAAK,CAAC,YAAY,CAAC,CAAC,QAAQ,CAAC,kDAAkD,CAAC;CAC5F,CAAC;KACD,QAAQ,CAAC,8EAA8E,CAAC,CAAC;AAM5F,2EAA2E;AAC3E,SAAS,SAAS,CAChB,CAAI;IAEJ,OAAO,CAAC,CAAC,SAAS,KAAK,SAAS,IAAI,CAAC,CAAC,OAAO,KAAK,SAAS;QACzD,CAAC,CAAC,EAAE,SAAS,EAAE,CAAC,CAAC,SAAS,EAAE,OAAO,EAAE,CAAC,CAAC,OAAO,EAAE;QAChD,CAAC,CAAC,EAAE,CAAC;AACT,CAAC;AAED;;;;;;;;;;;;;;;;GAgBG;AACH,SAAS,iBAAiB,CAAC,OAAqC,EAAE,KAAa;IAC7E,OAAO,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,KAAK,GAAG,OAAO,CAAC,MAAM,CAAC,CAAC,GAAG,EAAE,CAAC,EAAE,EAAE,CAAC,GAAG,GAAG,CAAC,CAAC,KAAK,EAAE,CAAC,CAAC,CAAC,CAAC;AAC3E,CAAC;AAED;;;;GAIG;AACH,MAAM,UAAU,aAAa,CAC3B,KAAqB,EACrB,GAAW,EACX,KAAa;IAEb,MAAM,SAAS,GAAG,KAAK,CAAC,OAAO,CAAC,MAAM,GAAG,GAAG,CAAC;IAC7C,OAAO;QACL,SAAS,EAAE,KAAK,CAAC,SAAS;QAC1B,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC;YAC/C,KAAK,EAAE,CAAC,CAAC,KAAK;YACd,KAAK,EAAE,CAAC,CAAC,KAAK;YACd,GAAG,SAAS,CAAC,CAAC,CAAC;YACf,GAAG,CAAC,CAAC,CAAC,KAAK;gBACT,CAAC,CAAC;oBACE,KAAK,EAAE;wBACL,SAAS,EAAE,CAAC,CAAC,KAAK,CAAC,SAAS;wBAC5B,OAAO,EAAE,CAAC,CAAC,KAAK,CAAC,OAAO;6BACrB,KAAK,CAAC,CAAC,EAAE,GAAG,CAAC;6BACb,GAAG,CAAC,CAAC,EAAE,EAAE,EAAE,CAAC,CAAC,EAAE,KAAK,EAAE,EAAE,CAAC,KAAK,EAAE,KAAK,EAAE,EAAE,CAAC,KAAK,EAAE,GAAG,SAAS,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC;wBACxE,GAAG,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,MAAM,GAAG,GAAG,CAAC,CAAC,CAAC,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;wBAC5D,iBAAiB,EAAE,iBAAiB,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,EAAE,CAAC,CAAC,KAAK,CAAC;qBAC/D;iBACF;gBACH,CAAC,CAAC,EAAE,CAAC;SACR,CAAC,CAAC;QACH,GAAG,CAAC,SAAS,CAAC,CAAC,CAAC,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;QACzC,iBAAiB,EAAE,iBAAiB,CAAC,KAAK,CAAC,OAAO,EAAE,KAAK,CAAC;KAC3D,CAAC;AACJ,CAAC;AAED;;;;;;;;;;GAUG;AACH,MAAM,UAAU,YAAY,CAAC,MAA8B;IACzD,IAAI,KAAK,GAAG,CAAC,CAAC;IACd,KAAK,MAAM,CAAC,IAAI,MAAM,EAAE,CAAC;QACvB,KAAK,IAAI,CAAC,CAAC,OAAO,CAAC,MAAM,CAAC;QAC1B,KAAK,MAAM,CAAC,IAAI,CAAC,CAAC,OAAO;YAAE,KAAK,IAAI,CAAC,CAAC,KAAK,EAAE,OAAO,CAAC,MAAM,IAAI,CAAC,CAAC;IACnE,CAAC;IACD,OAAO,KAAK,CAAC;AACf,CAAC;AAED;;;;GAIG;AACH,SAAS,YAAY,CAAC,CAKrB;IACC,MAAM,KAAK,GACT,CAAC,CAAC,SAAS,KAAK,SAAS,IAAI,CAAC,CAAC,OAAO,KAAK,SAAS,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,SAAS,IAAI,CAAC,CAAC,OAAO,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC;IAC/F,OAAO,GAAG,CAAC,CAAC,KAAK,GAAG,KAAK,KAAK,CAAC,CAAC,KAAK,EAAE,CAAC;AAC1C,CAAC;AAED;;;;;GAKG;AACH,MAAM,oBAAoB,GAAG,oDAAoD,CAAC;AAElF,2GAA2G;AAC3G,MAAM,0BAA0B,GAAG,yBAAyB,CAAC;AAE7D;;;;GAIG;AACH,SAAS,cAAc,CAAC,CAAiE;IACvF,MAAM,KAAK,GAAG;QACZ,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC,EAAE;QAC9B,CAAC,CAAC,iBAAiB,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,iBAAiB,gBAAgB,CAAC,CAAC,CAAC,EAAE;KACtE,CAAC,MAAM,CAAC,OAAO,CAAC,CAAC;IAClB,OAAO,KAAK,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,KAAK,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC;AAC1D,CAAC;AAED,iFAAiF;AACjF,MAAM,UAAU,YAAY,CAAC,MAA8B;IACzD,MAAM,KAAK,GAAa,EAAE,CAAC;IAC3B,KAAK,MAAM,CAAC,IAAI,MAAM,EAAE,CAAC;QACvB,KAAK,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,SAAS,KAAK,cAAc,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC;QACvD,IAAI,CAAC,CAAC,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YAC3B,KAAK,CAAC,IAAI,CAAC,oBAAoB,CAAC,CAAC;YACjC,SAAS;QACX,CAAC;QACD,KAAK,MAAM,CAAC,IAAI,CAAC,CAAC,OAAO,EAAE,CAAC;YAC1B,KAAK,CAAC,IAAI,CAAC,KAAK,YAAY,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC;YACnC,MAAM,CAAC,GAAG,CAAC,CAAC,KAAK,CAAC;YAClB,IAAI,CAAC,CAAC;gBAAE,SAAS;YACjB,MAAM,KAAK,GACT,CAAC,CAAC,OAAO,CAAC,MAAM,KAAK,CAAC;gBACpB,CAAC,CAAC,0BAA0B;gBAC5B,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,GAAG,CAAC,YAAY,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;YAC7C,KAAK,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,SAAS,MAAM,KAAK,GAAG,cAAc,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC;QAClE,CAAC;IACH,CAAC;IACD,OAAO,KAAK,CAAC;AACf,CAAC;AAED;;;;;;;;;;;GAWG;AACH,MAAM,qBAAqB,GAAG,IAAI,CAAC;AAUnC;;;;;;GAMG;AACH,SAAS,iBAAiB,CAAC,MAA8B,EAAE,KAAa;IACtE,MAAM,SAAS,GAAuB,EAAE,CAAC;IACzC,KAAK,MAAM,CAAC,IAAI,MAAM,EAAE,CAAC;QACvB,SAAS,CAAC,IAAI,CAAC;YACb,SAAS,EAAE,CAAC,CAAC,SAAS;YACtB,OAAO,EAAE,CAAC,CAAC,iBAAiB;YAC5B,KAAK,EAAE,KAAK;YACZ,WAAW,EAAE,CAAC,CAAC,OAAO,CAAC,MAAM;SAC9B,CAAC,CAAC;QACH,MAAM,QAAQ,GAAG,IAAI,GAAG,EAA+C,CAAC;QACxE,KAAK,MAAM,CAAC,IAAI,CAAC,CAAC,OAAO,EAAE,CAAC;YAC1B,MAAM,CAAC,GAAG,CAAC,CAAC,KAAK,CAAC;YAClB,IAAI,CAAC,CAAC;gBAAE,SAAS;YACjB,MAAM,GAAG,GAAG,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,SAAS,CAAC,IAAI,EAAE,OAAO,EAAE,CAAC,EAAE,KAAK,EAAE,CAAC,EAAE,WAAW,EAAE,CAAC,EAAE,CAAC;YAClF,GAAG,CAAC,OAAO,IAAI,CAAC,CAAC,iBAAiB,CAAC;YACnC,GAAG,CAAC,KAAK,IAAI,CAAC,CAAC,KAAK,CAAC;YACrB,GAAG,CAAC,WAAW,IAAI,CAAC,CAAC,OAAO,CAAC,MAAM,CAAC;YACpC,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,SAAS,EAAE,GAAG,CAAC,CAAC;QACjC,CAAC;QACD,KAAK,MAAM,CAAC,SAAS,EAAE,GAAG,CAAC,IAAI,QAAQ;YAAE,SAAS,CAAC,IAAI,CAAC,EAAE,SAAS,EAAE,GAAG,GAAG,EAAE,CAAC,CAAC;IACjF,CAAC;IACD,OAAO,SAAS,CAAC;AACnB,CAAC;AAED;;;;;;;GAOG;AACH,MAAM,UAAU,eAAe,CAAC,MAA8B,EAAE,KAAa;IAC3E,MAAM,IAAI,GAAG,IAAI,GAAG,EAAU,CAAC;IAC/B,MAAM,OAAO,GAAa,EAAE,CAAC;IAC7B,KAAK,MAAM,CAAC,IAAI,iBAAiB,CAAC,MAAM,EAAE,KAAK,CAAC,EAAE,CAAC;QACjD,IAAI,CAAC,CAAC,KAAK,IAAI,CAAC,IAAI,CAAC,CAAC,WAAW,KAAK,CAAC;YAAE,SAAS;QAClD,IAAI,CAAC,CAAC,OAAO,GAAG,CAAC,CAAC,KAAK,GAAG,qBAAqB;YAAE,SAAS;QAC1D,IAAI,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,SAAS,CAAC;YAAE,SAAS;QACpC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC;QACtB,MAAM,GAAG,GAAG,CAAC,CAAC,CAAC,CAAC,OAAO,GAAG,CAAC,CAAC,KAAK,CAAC,GAAG,GAAG,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC;QACrD,OAAO,CAAC,IAAI,CACV,GAAG,CAAC,CAAC,SAAS,kBAAkB,CAAC,CAAC,KAAK,GAAG,CAAC,CAAC,OAAO,OAAO,CAAC,CAAC,KAAK,uBAAuB,CAAC,CAAC,OAAO,KAAK,GAAG,eAAe,CAAC,CAAC,SAAS,+BAA+B,CACnK,CAAC;IACJ,CAAC;IACD,OAAO,OAAO,CAAC;AACjB,CAAC;AAED,sFAAsF;AACtF,MAAM,CAAC,MAAM,iBAAiB,GAAG,CAAC;KAC/B,MAAM,CAAC;IACN,MAAM,EAAE,CAAC;SACN,MAAM,EAAE;SACR,QAAQ,CACP,uLAAuL,CACxL;IACH,OAAO,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,+DAA+D,CAAC;IAC7F,QAAQ,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,mDAAmD,CAAC;IAClF,QAAQ,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,iCAAiC,CAAC;CACjE,CAAC;KACD,QAAQ,CAAC,oEAAoE,CAAC,CAAC;AAIlF,gGAAgG;AAChG,MAAM,UAAU,iBAAiB,CAAC,YAAiC;IACjE,MAAM,KAAK,GAAa,EAAE,CAAC;IAC3B,KAAK,MAAM,CAAC,IAAI,YAAY,EAAE,CAAC;QAC7B,KAAK,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,MAAM,OAAO,CAAC,CAAC,OAAO,OAAO,CAAC,CAAC,QAAQ,MAAM,CAAC,CAAC,QAAQ,EAAE,CAAC,CAAC;IACjF,CAAC;IACD,OAAO,KAAK,CAAC;AACf,CAAC"}
package/dist/mcp-server/tools/definitions/analyze-collection.tool.d.ts CHANGED
@@ -72,5 +72,6 @@ export declare const analyzeCollection: import("@cyanheads/mcp-ts-core").ToolDef
72
72
  readonly truncated: z.ZodOptional<z.ZodBoolean>;
73
73
  readonly shown: z.ZodOptional<z.ZodNumber>;
74
74
  readonly cap: z.ZodOptional<z.ZodNumber>;
75
+ readonly bucketsReturned: z.ZodNumber;
75
76
  }>;
76
77
  //# sourceMappingURL=analyze-collection.tool.d.ts.map
package/dist/mcp-server/tools/definitions/analyze-collection.tool.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"analyze-collection.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/analyze-collection.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAwBjE,eAAO,MAAM,iBAAiB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EAwK5B,CAAC"}
1
+ {"version":3,"file":"analyze-collection.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/analyze-collection.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAyBjE,eAAO,MAAM,iBAAiB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EA0L5B,CAAC"}
package/dist/mcp-server/tools/definitions/analyze-collection.tool.js CHANGED
@@ -11,7 +11,7 @@ import { JsonRpcErrorCode } from '@cyanheads/mcp-ts-core/errors';
11
11
  import { getServerConfig } from '../../../config/server-config.js';
12
12
  import { buildFacetSpec, FACET_DIMENSION_NAMES, } from '../../../services/rcsb/facets.js';
13
13
  import { getRcsbService } from '../../../services/rcsb/rcsb-service.js';
14
- import { CONTENT_TYPE_SCOPES, coverageNotices, facetDimensionSchema, renderFacets, toFacetOutput, } from './_schemas.js';
14
+ import { CONTENT_TYPE_SCOPES, countBuckets, coverageNotices, facetDimensionSchema, renderFacets, toFacetOutput, } from './_schemas.js';
15
15
  /**
16
16
  * Dimensions RCSB cannot aggregate over computed models: an AlphaFold /
17
17
  * ModelArchive record carries no experimental method or resolution, so the
@@ -25,7 +25,9 @@ export const analyzeCollection = tool('protein_analyze_collection', {
25
25
  'organism, or polymer composition; resolution and molecular-weight histograms; release-year timelines; ' +
26
26
  'and multidimensional cross-tabs (e.g. method × release_year). Aggregation runs server-side at RCSB — ' +
27
27
  'one call returns compact buckets, no row pull. Pass one group_by dimension for a single breakdown, or ' +
28
- 'two distinct dimensions for a cross-tab (the first nests the second).',
28
+ 'two distinct dimensions for a cross-tab (the first nests the second). bucket_limit caps each dimension ' +
29
+ 'level separately rather than the response, so a cross-tab returns up to that many nested buckets under ' +
30
+ 'each of its capped parent buckets; bucketsReturned reports the realized total.',
29
31
  annotations: { readOnlyHint: true, openWorldHint: true },
30
32
  errors: [
31
33
  {
@@ -82,7 +84,10 @@ export const analyzeCollection = tool('protein_analyze_collection', {
82
84
  .min(1)
83
85
  .max(500)
84
86
  .optional()
85
- .describe('Max buckets per dimension. Defaults to the server PROTEIN_FACET_BUCKET_CAP.'),
87
+ .describe('Max buckets per dimension level, not per response. A cross-tab applies the cap separately to the ' +
88
+ 'parent dimension and to the nested child inside each parent bucket, so up to ' +
89
+ 'bucket_limit × (1 + bucket_limit) buckets can come back — 2550 at the default 50. The realized ' +
90
+ 'count comes back as bucketsReturned. Defaults to the server PROTEIN_FACET_BUCKET_CAP.'),
86
91
  }),
87
92
  output: z.object({
88
93
  total: z.number().describe('Total entries in the scoped collection.'),
@@ -100,6 +105,11 @@ export const analyzeCollection = tool('protein_analyze_collection', {
100
105
  .describe('True when a dimension had more buckets than the applied cap.'),
101
106
  shown: z.number().optional().describe('Buckets returned for the capped dimension.'),
102
107
  cap: z.number().optional().describe('Per-dimension bucket cap that was applied.'),
108
+ bucketsReturned: z
109
+ .number()
110
+ .describe('Buckets in this response, summed over every dimension level: the top-level buckets plus, for a ' +
111
+ 'cross-tab, the nested child buckets under each of them. Since bucket_limit caps each level ' +
112
+ 'separately, this is the size those caps actually produced — always present, cross-tab or not.'),
103
113
  },
104
114
  async handler(input, ctx) {
105
115
  const cfg = getServerConfig();
@@ -127,6 +137,9 @@ export const analyzeCollection = tool('protein_analyze_collection', {
127
137
  contentType: CONTENT_TYPE_SCOPES[input.content_type],
128
138
  }, [spec], ctx);
129
139
  const out = facets.map((f) => toFacetOutput(f, cap, total));
140
+ // The cap bounds each dimension level, so a cross-tab's size is the product of
141
+ // two capped lists rather than one. Report what the response actually holds.
142
+ ctx.enrich({ bucketsReturned: countBuckets(out) });
130
143
  // Every advisory writes the same `notice` field (ctx.enrich.truncated routes
131
144
  // through it and is last-wins), and a cross-tab under predicted content can
132
145
  // trip several at once — collect the fragments and emit them as ONE notice.
package/dist/mcp-server/tools/definitions/analyze-collection.tool.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"analyze-collection.tool.js","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/analyze-collection.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EAAE,IAAI,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AACjE,OAAO,EAAE,eAAe,EAAE,MAAM,2BAA2B,CAAC;AAC5D,OAAO,EACL,cAAc,EACd,qBAAqB,GAEtB,MAAM,2BAA2B,CAAC;AACnC,OAAO,EAAE,cAAc,EAAE,MAAM,iCAAiC,CAAC;AACjE,OAAO,EACL,mBAAmB,EACnB,eAAe,EACf,oBAAoB,EACpB,YAAY,EACZ,aAAa,GACd,MAAM,eAAe,CAAC;AAEvB;;;;;GAKG;AACH,MAAM,4BAA4B,GAAG,IAAI,GAAG,CAAqB,CAAC,QAAQ,EAAE,YAAY,CAAC,CAAC,CAAC;AAE3F,MAAM,CAAC,MAAM,iBAAiB,GAAG,IAAI,CAAC,4BAA4B,EAAE;IAClE,KAAK,EAAE,wCAAwC;IAC/C,WAAW,EACT,kGAAkG;QAClG,wGAAwG;QACxG,uGAAuG;QACvG,wGAAwG;QACxG,uEAAuE;IACzE,WAAW,EAAE,EAAE,YAAY,EAAE,IAAI,EAAE,aAAa,EAAE,IAAI,EAAE;IAExD,MAAM,EAAE;QACN;YACE,MAAM,EAAE,mBAAmB;YAC3B,IAAI,EAAE,gBAAgB,CAAC,aAAa;YACpC,IAAI,EAAE,0DAA0D;YAChE,QAAQ,EACN,2GAA2G;SAC9G;QACD;YACE,MAAM,EAAE,qBAAqB;YAC7B,IAAI,EAAE,gBAAgB,CAAC,aAAa;YACpC,IAAI,EAAE,qFAAqF;YAC3F,QAAQ,EACN,8GAA8G;SACjH;KACF;IAED,KAAK,EAAE,CAAC,CAAC,MAAM,CAAC;QACd,QAAQ,EAAE,CAAC;aACR,KAAK,CAAC,CAAC,CAAC,IAAI,CAAC,qBAAqB,CAAC,CAAC;aACpC,GAAG,CAAC,CAAC,CAAC;aACN,GAAG,CAAC,CAAC,CAAC;aACN,QAAQ,CACP,wIAAwI,CACzI;QACH,KAAK,EAAE,CAAC;aACL,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,CAAC,0EAA0E,CAAC;QACvF,QAAQ,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,iCAAiC,CAAC;QAC3E,MAAM,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,qCAAqC,CAAC;QAC7E,cAAc,EAAE,CAAC,CAAC,MAAM;aACrB,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,EAAE;aACV,QAAQ,CAAC,wCAAwC,CAAC;QACrD,YAAY,EAAE,CAAC;aACZ,IAAI,CAAC,CAAC,cAAc,EAAE,WAAW,EAAE,KAAK,CAAC,CAAC;aAC1C,OAAO,CAAC,cAAc,CAAC;aACvB,QAAQ,CACP,sFAAsF;YACpF,mFAAmF,CACtF;QACH,QAAQ,EAAE,CAAC;aACR,KAAK,CAAC;YACL,2EAA2E;YAC3E,0EAA0E;YAC1E,+EAA+E;YAC/E,CAAC,CAAC,MAAM;iBACL,MAAM,EAAE;iBACR,QAAQ,EAAE;iBACV,QAAQ,CAAC,8DAA8D,CAAC;YAC3E,CAAC,CAAC,IAAI,CAAC,CAAC,MAAM,EAAE,OAAO,EAAE,SAAS,CAAC,CAAC,CAAC,QAAQ,CAAC,0CAA0C,CAAC;SAC1F,CAAC;aACD,QAAQ,EAAE;aACV,QAAQ,CACP,mGAAmG,CACpG;QACH,YAAY,EAAE,CAAC,CAAC,MAAM;aACnB,MAAM,EAAE;aACR,GAAG,EAAE;aACL,GAAG,CAAC,CAAC,CAAC;aACN,GAAG,CAAC,GAAG,CAAC;aACR,QAAQ,EAAE;aACV,QAAQ,CAAC,6EAA6E,CAAC;KAC3F,CAAC;IAEF,MAAM,EAAE,CAAC,CAAC,MAAM,CAAC;QACf,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,yCAAyC,CAAC;QACrE,MAAM,EAAE,CAAC,CAAC,KAAK,CAAC,oBAAoB,CAAC,CAAC,QAAQ,CAAC,6BAA6B,CAAC;KAC9E,CAAC;IAEF,UAAU,EAAE;QACV,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,+CAA+C,CAAC;QACtF,MAAM,EAAE,CAAC;aACN,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,CACP,2NAA2N,CAC5N;QACH,SAAS,EAAE,CAAC;aACT,OAAO,EAAE;aACT,QAAQ,EAAE;aACV,QAAQ,CAAC,8DAA8D,CAAC;QAC3E,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,4CAA4C,CAAC;QACnF,GAAG,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,4CAA4C,CAAC;KAClF;IAED,KAAK,CAAC,OAAO,CAAC,KAAK,EAAE,GAAG;QACtB,MAAM,GAAG,GAAG,eAAe,EAAE,CAAC;QAC9B,MAAM,IAAI,GAAG,cAAc,EAAE,CAAC;QAC9B,MAAM,GAAG,GAAG,KAAK,CAAC,YAAY,IAAI,GAAG,CAAC,cAAc,CAAC;QACrD,MAAM,CAAC,OAAO,EAAE,SAAS,CAAC,GAAG,KAAK,CAAC,QAAQ,CAAC;QAC5C,IAAI,CAAC,OAAO;YACV,MAAM,GAAG,CAAC,IAAI,CAAC,mBAAmB,EAAE,2CAA2C,EAAE;gBAC/E,GAAG,GAAG,CAAC,WAAW,CAAC,mBAAmB,CAAC;aACxC,CAAC,CAAC;QACL,+EAA+E;QAC/E,6EAA6E;QAC7E,uEAAuE;QACvE,MAAM,SAAS,GAAG,KAAK,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,GAAG,EAAE,EAAE,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC;QAC3E,IAAI,SAAS;YACX,MAAM,GAAG,CAAC,IAAI,CACZ,qBAAqB,EACrB,mBAAmB,SAAS,qDAAqD,EACjF,EAAE,GAAG,GAAG,CAAC,WAAW,CAAC,qBAAqB,CAAC,EAAE,CAC9C,CAAC;QACJ,MAAM,IAAI,GAAG,cAAc,CAAC,OAAO,EAAE,KAAK,CAAC,QAAQ,EAAE,SAAS,CAAC,CAAC;QAEhE,MAAM,EAAE,KAAK,EAAE,MAAM,EAAE,GAAG,MAAM,IAAI,CAAC,aAAa,CAChD;YACE,GAAG,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,IAAI,EAAE,KAAK,CAAC,KAAK,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;YAC7C,GAAG,CAAC,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,EAAE,QAAQ,EAAE,KAAK,CAAC,QAAQ,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;YACvD,GAAG,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,MAAM,EAAE,KAAK,CAAC,MAAM,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;YACjD,GAAG,CAAC,OAAO,KAAK,CAAC,cAAc,KAAK,QAAQ;gBAC1C,CAAC,CAAC,EAAE,aAAa,EAAE,KAAK,CAAC,cAAc,EAAE;gBACzC,CAAC,CAAC,EAAE,CAAC;YACP,WAAW,EAAE,mBAAmB,CAAC,KAAK,CAAC,YAAY,CAAC;SACrD,EACD,CAAC,IAAI,CAAC,EACN,GAAG,CACJ,CAAC;QAEF,MAAM,GAAG,GAAG,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,aAAa,CAAC,CAAC,EAAE,GAAG,EAAE,KAAK,CAAC,CAAC,CAAC;QAE5D,6EAA6E;QAC7E,4EAA4E;QAC5E,4EAA4E;QAC5E,MAAM,OAAO,GAAa,EAAE,CAAC;QAC7B,MAAM,MAAM,GAAG,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC;QAC5C,IAAI,MAAM,EAAE,CAAC;YACX,GAAG,CAAC,MAAM,CAAC,EAAE,SAAS,EAAE,IAAI,EAAE,KAAK,EAAE,MAAM,CAAC,OAAO,CAAC,MAAM,EAAE,GAAG,EAAE,CAAC,CAAC;YACnE,OAAO,CAAC,IAAI,CACV,mCAAmC,GAAG,sEAAsE,CAC7G,CAAC;QACJ,CAAC;QACD,IAAI,KAAK,CAAC,YAAY,KAAK,WAAW,EAAE,CAAC;YACvC,MAAM,KAAK,GAAG,KAAK,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,4BAA4B,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;YAChF,IAAI,KAAK,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;gBACrB,OAAO,CAAC,IAAI,CACV,GAAG,KAAK,CAAC,IAAI,CAAC,OAAO,CAAC,IAAI,KAAK,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,IAAI,8NAA8N,CACxR,CAAC;YACJ,CAAC;QACH,CAAC;QACD,OAAO,CAAC,IAAI,CAAC,GAAG,eAAe,CAAC,GAAG,EAAE,KAAK,CAAC,CAAC,CAAC;QAC7C,IAAI,OAAO,CAAC,MAAM,GAAG,CAAC;YAAE,GAAG,CAAC,MAAM,CAAC,MAAM,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC;QAE7D,MAAM,SAAS,GAAG,CAAC,KAAK,CAAC,KAAK,EAAE,KAAK,CAAC,QAAQ,EAAE,KAAK,CAAC,MAAM,CAAC,CAAC,MAAM,CAAC,OAAO,CAAC,CAAC;QAC9E,IAAI,SAAS,CAAC,MAAM,GAAG,CAAC;YAAE,GAAG,CAAC,MAAM,CAAC,EAAE,KAAK,EAAE,SAAS,CAAC,IAAI,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;QAEvE,OAAO,EAAE,KAAK,EAAE,MAAM,EAAE,GAAG,EAAE,CAAC;IAChC,CAAC;IAED,MAAM,EAAE,CAAC,MAAM,EAAE,EAAE;QACjB,MAAM,KAAK,GAAa,CAAC,2BAA2B,MAAM,CAAC,KAAK,UAAU,CAAC,CAAC;QAC5E,KAAK,CAAC,IAAI,CAAC,GAAG,YAAY,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC;QAC3C,OAAO,CAAC,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IACpD,CAAC;CACF,CAAC,CAAC"}
1
+ {"version":3,"file":"analyze-collection.tool.js","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/analyze-collection.tool.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EAAE,IAAI,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AACjE,OAAO,EAAE,eAAe,EAAE,MAAM,2BAA2B,CAAC;AAC5D,OAAO,EACL,cAAc,EACd,qBAAqB,GAEtB,MAAM,2BAA2B,CAAC;AACnC,OAAO,EAAE,cAAc,EAAE,MAAM,iCAAiC,CAAC;AACjE,OAAO,EACL,mBAAmB,EACnB,YAAY,EACZ,eAAe,EACf,oBAAoB,EACpB,YAAY,EACZ,aAAa,GACd,MAAM,eAAe,CAAC;AAEvB;;;;;GAKG;AACH,MAAM,4BAA4B,GAAG,IAAI,GAAG,CAAqB,CAAC,QAAQ,EAAE,YAAY,CAAC,CAAC,CAAC;AAE3F,MAAM,CAAC,MAAM,iBAAiB,GAAG,IAAI,CAAC,4BAA4B,EAAE;IAClE,KAAK,EAAE,wCAAwC;IAC/C,WAAW,EACT,kGAAkG;QAClG,wGAAwG;QACxG,uGAAuG;QACvG,wGAAwG;QACxG,yGAAyG;QACzG,yGAAyG;QACzG,gFAAgF;IAClF,WAAW,EAAE,EAAE,YAAY,EAAE,IAAI,EAAE,aAAa,EAAE,IAAI,EAAE;IAExD,MAAM,EAAE;QACN;YACE,MAAM,EAAE,mBAAmB;YAC3B,IAAI,EAAE,gBAAgB,CAAC,aAAa;YACpC,IAAI,EAAE,0DAA0D;YAChE,QAAQ,EACN,2GAA2G;SAC9G;QACD;YACE,MAAM,EAAE,qBAAqB;YAC7B,IAAI,EAAE,gBAAgB,CAAC,aAAa;YACpC,IAAI,EAAE,qFAAqF;YAC3F,QAAQ,EACN,8GAA8G;SACjH;KACF;IAED,KAAK,EAAE,CAAC,CAAC,MAAM,CAAC;QACd,QAAQ,EAAE,CAAC;aACR,KAAK,CAAC,CAAC,CAAC,IAAI,CAAC,qBAAqB,CAAC,CAAC;aACpC,GAAG,CAAC,CAAC,CAAC;aACN,GAAG,CAAC,CAAC,CAAC;aACN,QAAQ,CACP,wIAAwI,CACzI;QACH,KAAK,EAAE,CAAC;aACL,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,CAAC,0EAA0E,CAAC;QACvF,QAAQ,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,iCAAiC,CAAC;QAC3E,MAAM,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,qCAAqC,CAAC;QAC7E,cAAc,EAAE,CAAC,CAAC,MAAM;aACrB,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,EAAE;aACV,QAAQ,CAAC,wCAAwC,CAAC;QACrD,YAAY,EAAE,CAAC;aACZ,IAAI,CAAC,CAAC,cAAc,EAAE,WAAW,EAAE,KAAK,CAAC,CAAC;aAC1C,OAAO,CAAC,cAAc,CAAC;aACvB,QAAQ,CACP,sFAAsF;YACpF,mFAAmF,CACtF;QACH,QAAQ,EAAE,CAAC;aACR,KAAK,CAAC;YACL,2EAA2E;YAC3E,0EAA0E;YAC1E,+EAA+E;YAC/E,CAAC,CAAC,MAAM;iBACL,MAAM,EAAE;iBACR,QAAQ,EAAE;iBACV,QAAQ,CAAC,8DAA8D,CAAC;YAC3E,CAAC,CAAC,IAAI,CAAC,CAAC,MAAM,EAAE,OAAO,EAAE,SAAS,CAAC,CAAC,CAAC,QAAQ,CAAC,0CAA0C,CAAC;SAC1F,CAAC;aACD,QAAQ,EAAE;aACV,QAAQ,CACP,mGAAmG,CACpG;QACH,YAAY,EAAE,CAAC,CAAC,MAAM;aACnB,MAAM,EAAE;aACR,GAAG,EAAE;aACL,GAAG,CAAC,CAAC,CAAC;aACN,GAAG,CAAC,GAAG,CAAC;aACR,QAAQ,EAAE;aACV,QAAQ,CACP,mGAAmG;YACjG,+EAA+E;YAC/E,iGAAiG;YACjG,uFAAuF,CAC1F;KACJ,CAAC;IAEF,MAAM,EAAE,CAAC,CAAC,MAAM,CAAC;QACf,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,yCAAyC,CAAC;QACrE,MAAM,EAAE,CAAC,CAAC,KAAK,CAAC,oBAAoB,CAAC,CAAC,QAAQ,CAAC,6BAA6B,CAAC;KAC9E,CAAC;IAEF,UAAU,EAAE;QACV,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,+CAA+C,CAAC;QACtF,MAAM,EAAE,CAAC;aACN,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,CACP,2NAA2N,CAC5N;QACH,SAAS,EAAE,CAAC;aACT,OAAO,EAAE;aACT,QAAQ,EAAE;aACV,QAAQ,CAAC,8DAA8D,CAAC;QAC3E,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,4CAA4C,CAAC;QACnF,GAAG,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,4CAA4C,CAAC;QACjF,eAAe,EAAE,CAAC;aACf,MAAM,EAAE;aACR,QAAQ,CACP,iGAAiG;YAC/F,6FAA6F;YAC7F,+FAA+F,CAClG;KACJ;IAED,KAAK,CAAC,OAAO,CAAC,KAAK,EAAE,GAAG;QACtB,MAAM,GAAG,GAAG,eAAe,EAAE,CAAC;QAC9B,MAAM,IAAI,GAAG,cAAc,EAAE,CAAC;QAC9B,MAAM,GAAG,GAAG,KAAK,CAAC,YAAY,IAAI,GAAG,CAAC,cAAc,CAAC;QACrD,MAAM,CAAC,OAAO,EAAE,SAAS,CAAC,GAAG,KAAK,CAAC,QAAQ,CAAC;QAC5C,IAAI,CAAC,OAAO;YACV,MAAM,GAAG,CAAC,IAAI,CAAC,mBAAmB,EAAE,2CAA2C,EAAE;gBAC/E,GAAG,GAAG,CAAC,WAAW,CAAC,mBAAmB,CAAC;aACxC,CAAC,CAAC;QACL,+EAA+E;QAC/E,6EAA6E;QAC7E,uEAAuE;QACvE,MAAM,SAAS,GAAG,KAAK,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,GAAG,EAAE,EAAE,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC;QAC3E,IAAI,SAAS;YACX,MAAM,GAAG,CAAC,IAAI,CACZ,qBAAqB,EACrB,mBAAmB,SAAS,qDAAqD,EACjF,EAAE,GAAG,GAAG,CAAC,WAAW,CAAC,qBAAqB,CAAC,EAAE,CAC9C,CAAC;QACJ,MAAM,IAAI,GAAG,cAAc,CAAC,OAAO,EAAE,KAAK,CAAC,QAAQ,EAAE,SAAS,CAAC,CAAC;QAEhE,MAAM,EAAE,KAAK,EAAE,MAAM,EAAE,GAAG,MAAM,IAAI,CAAC,aAAa,CAChD;YACE,GAAG,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,IAAI,EAAE,KAAK,CAAC,KAAK,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;YAC7C,GAAG,CAAC,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,EAAE,QAAQ,EAAE,KAAK,CAAC,QAAQ,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;YACvD,GAAG,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,MAAM,EAAE,KAAK,CAAC,MAAM,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;YACjD,GAAG,CAAC,OAAO,KAAK,CAAC,cAAc,KAAK,QAAQ;gBAC1C,CAAC,CAAC,EAAE,aAAa,EAAE,KAAK,CAAC,cAAc,EAAE;gBACzC,CAAC,CAAC,EAAE,CAAC;YACP,WAAW,EAAE,mBAAmB,CAAC,KAAK,CAAC,YAAY,CAAC;SACrD,EACD,CAAC,IAAI,CAAC,EACN,GAAG,CACJ,CAAC;QAEF,MAAM,GAAG,GAAG,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,aAAa,CAAC,CAAC,EAAE,GAAG,EAAE,KAAK,CAAC,CAAC,CAAC;QAE5D,+EAA+E;QAC/E,6EAA6E;QAC7E,GAAG,CAAC,MAAM,CAAC,EAAE,eAAe,EAAE,YAAY,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC;QAEnD,6EAA6E;QAC7E,4EAA4E;QAC5E,4EAA4E;QAC5E,MAAM,OAAO,GAAa,EAAE,CAAC;QAC7B,MAAM,MAAM,GAAG,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC;QAC5C,IAAI,MAAM,EAAE,CAAC;YACX,GAAG,CAAC,MAAM,CAAC,EAAE,SAAS,EAAE,IAAI,EAAE,KAAK,EAAE,MAAM,CAAC,OAAO,CAAC,MAAM,EAAE,GAAG,EAAE,CAAC,CAAC;YACnE,OAAO,CAAC,IAAI,CACV,mCAAmC,GAAG,sEAAsE,CAC7G,CAAC;QACJ,CAAC;QACD,IAAI,KAAK,CAAC,YAAY,KAAK,WAAW,EAAE,CAAC;YACvC,MAAM,KAAK,GAAG,KAAK,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,4BAA4B,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;YAChF,IAAI,KAAK,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;gBACrB,OAAO,CAAC,IAAI,CACV,GAAG,KAAK,CAAC,IAAI,CAAC,OAAO,CAAC,IAAI,KAAK,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,IAAI,8NAA8N,CACxR,CAAC;YACJ,CAAC;QACH,CAAC;QACD,OAAO,CAAC,IAAI,CAAC,GAAG,eAAe,CAAC,GAAG,EAAE,KAAK,CAAC,CAAC,CAAC;QAC7C,IAAI,OAAO,CAAC,MAAM,GAAG,CAAC;YAAE,GAAG,CAAC,MAAM,CAAC,MAAM,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC;QAE7D,MAAM,SAAS,GAAG,CAAC,KAAK,CAAC,KAAK,EAAE,KAAK,CAAC,QAAQ,EAAE,KAAK,CAAC,MAAM,CAAC,CAAC,MAAM,CAAC,OAAO,CAAC,CAAC;QAC9E,IAAI,SAAS,CAAC,MAAM,GAAG,CAAC;YAAE,GAAG,CAAC,MAAM,CAAC,EAAE,KAAK,EAAE,SAAS,CAAC,IAAI,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;QAEvE,OAAO,EAAE,KAAK,EAAE,MAAM,EAAE,GAAG,EAAE,CAAC;IAChC,CAAC;IAED,MAAM,EAAE,CAAC,MAAM,EAAE,EAAE;QACjB,MAAM,KAAK,GAAa,CAAC,2BAA2B,MAAM,CAAC,KAAK,UAAU,CAAC,CAAC;QAC5E,KAAK,CAAC,IAAI,CAAC,GAAG,YAAY,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC;QAC3C,OAAO,CAAC,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IACpD,CAAC;CACF,CAAC,CAAC"}
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@cyanheads/protein-mcp-server",
3
- "version": "0.5.0",
3
+ "version": "0.5.2",
4
4
  "mcpName": "io.github.cyanheads/protein-mcp-server",
5
5
  "description": "Federated protein structure & annotation across experimental (PDB) and predicted (AlphaFold) models via MCP. STDIO or Streamable HTTP.",
6
6
  "type": "module",
@@ -82,7 +82,7 @@
82
82
  }
83
83
  ],
84
84
  "license": "Apache-2.0",
85
- "packageManager": "bun@1.3.14",
85
+ "packageManager": "bun@1.4.0",
86
86
  "engines": {
87
87
  "bun": ">=1.3.0",
88
88
  "node": ">=24.0.0"
@@ -91,18 +91,18 @@
91
91
  "access": "public"
92
92
  },
93
93
  "dependencies": {
94
- "@cyanheads/mcp-ts-core": "^0.11.5",
94
+ "@cyanheads/mcp-ts-core": "^0.12.3",
95
95
  "pino-pretty": "^13.1.3",
96
96
  "zod": "^4.4.3"
97
97
  },
98
98
  "devDependencies": {
99
- "@biomejs/biome": "2.5.8",
99
+ "@biomejs/biome": "2.5.10",
100
100
  "@socketsecurity/bun-security-scanner": "^1.1.2",
101
101
  "@types/node": "26.2.0",
102
102
  "depcheck": "^1.4.7",
103
103
  "ignore": "^7.0.6",
104
- "tsc-alias": "^1.9.1",
104
+ "tsc-alias": "^1.9.2",
105
105
  "typescript": "^7.0.2",
106
- "vitest": "^4.1.10"
106
+ "vitest": "^4.1.11"
107
107
  }
108
108
  }
package/server.json CHANGED
@@ -6,7 +6,7 @@
6
6
  "url": "https://github.com/cyanheads/protein-mcp-server",
7
7
  "source": "github"
8
8
  },
9
- "version": "0.5.0",
9
+ "version": "0.5.2",
10
10
  "remotes": [
11
11
  {
12
12
  "type": "streamable-http",
@@ -19,7 +19,7 @@
19
19
  "registryBaseUrl": "https://registry.npmjs.org",
20
20
  "identifier": "@cyanheads/protein-mcp-server",
21
21
  "runtimeHint": "node",
22
- "version": "0.5.0",
22
+ "version": "0.5.2",
23
23
  "packageArguments": [
24
24
  {
25
25
  "type": "positional",
@@ -48,7 +48,7 @@
48
48
  "registryBaseUrl": "https://registry.npmjs.org",
49
49
  "identifier": "@cyanheads/protein-mcp-server",
50
50
  "runtimeHint": "node",
51
- "version": "0.5.0",
51
+ "version": "0.5.2",
52
52
  "packageArguments": [
53
53
  {
54
54
  "type": "positional",