@cyanheads/protein-mcp-server 0.1.4 → 0.2.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/AGENTS.md +2 -2
- package/CLAUDE.md +2 -2
- package/README.md +7 -6
- package/changelog/0.2.x/0.2.0.md +25 -0
- package/changelog/0.2.x/0.2.1.md +16 -0
- package/dist/mcp-server/tools/definitions/_schemas.d.ts +1 -0
- package/dist/mcp-server/tools/definitions/_schemas.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/_schemas.js +6 -1
- package/dist/mcp-server/tools/definitions/_schemas.js.map +1 -1
- package/dist/mcp-server/tools/definitions/analyze-collection.tool.d.ts +1 -0
- package/dist/mcp-server/tools/definitions/analyze-collection.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/analyze-collection.tool.js +3 -1
- package/dist/mcp-server/tools/definitions/analyze-collection.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/compare-structures.tool.d.ts +12 -1
- package/dist/mcp-server/tools/definitions/compare-structures.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/compare-structures.tool.js +70 -11
- package/dist/mcp-server/tools/definitions/compare-structures.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/find-similar.tool.d.ts +6 -0
- package/dist/mcp-server/tools/definitions/find-similar.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/find-similar.tool.js +42 -19
- package/dist/mcp-server/tools/definitions/find-similar.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/get-annotations.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/get-annotations.tool.js +4 -2
- package/dist/mcp-server/tools/definitions/get-annotations.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/get-structure.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/get-structure.tool.js +3 -3
- package/dist/mcp-server/tools/definitions/get-structure.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/search-structures.tool.d.ts +1 -0
- package/dist/mcp-server/tools/definitions/search-structures.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/search-structures.tool.js +3 -1
- package/dist/mcp-server/tools/definitions/search-structures.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/track-ligands.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/track-ligands.tool.js +16 -4
- package/dist/mcp-server/tools/definitions/track-ligands.tool.js.map +1 -1
- package/dist/services/alignment/alignment-service.d.ts +8 -0
- package/dist/services/alignment/alignment-service.d.ts.map +1 -1
- package/dist/services/alignment/alignment-service.js +24 -0
- package/dist/services/alignment/alignment-service.js.map +1 -1
- package/dist/services/foldseek/foldseek-service.d.ts +15 -1
- package/dist/services/foldseek/foldseek-service.d.ts.map +1 -1
- package/dist/services/foldseek/foldseek-service.js +30 -0
- package/dist/services/foldseek/foldseek-service.js.map +1 -1
- package/package.json +4 -4
- package/server.json +3 -3
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@@ -1 +1 @@
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-
{"version":3,"file":"foldseek-service.js","sourceRoot":"","sources":["../../../src/services/foldseek/foldseek-service.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;
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package/package.json
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"name": "@cyanheads/protein-mcp-server",
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"version": "0.1
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"version": "0.2.1",
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"mcpName": "io.github.cyanheads/protein-mcp-server",
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"description": "Federated protein structure & annotation across experimental (PDB) and predicted (AlphaFold) models via MCP. STDIO or Streamable HTTP.",
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"type": "module",
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"dependencies": {
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"@cyanheads/mcp-ts-core": "^0.10.
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"@cyanheads/mcp-ts-core": "^0.10.10",
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"pino-pretty": "^13.1.3",
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"zod": "^4.4.3"
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"devDependencies": {
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"@biomejs/biome": "2.5.
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"@types/node": "26.
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"@biomejs/biome": "2.5.2",
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"@types/node": "26.1.0",
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"depcheck": "^1.4.7",
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"ignore": "^7.0.5",
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"tsc-alias": "^1.8.17",
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package/server.json
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"url": "https://github.com/cyanheads/protein-mcp-server",
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"identifier": "@cyanheads/protein-mcp-server",
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