@cyanheads/openalex-mcp-server 0.7.10 → 0.7.12
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/AGENTS.md +5 -3
- package/CLAUDE.md +5 -3
- package/README.md +9 -7
- package/changelog/0.7.x/0.7.11.md +29 -0
- package/changelog/0.7.x/0.7.12.md +13 -0
- package/dist/mcp-server/tools/definitions/analyze-trends.tool.js +1 -1
- package/dist/mcp-server/tools/definitions/citation-graph.tool.d.ts +1 -1
- package/dist/mcp-server/tools/definitions/citation-graph.tool.js +4 -4
- package/dist/mcp-server/tools/definitions/citation-graph.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/describe-fields.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/describe-fields.tool.js +6 -10
- package/dist/mcp-server/tools/definitions/describe-fields.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/resolve-name.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/resolve-name.tool.js +10 -5
- package/dist/mcp-server/tools/definitions/resolve-name.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/search-entities.tool.js +4 -4
- package/dist/mcp-server/tools/definitions/search-entities.tool.js.map +1 -1
- package/dist/services/openalex/field-ranker.d.ts +13 -0
- package/dist/services/openalex/field-ranker.d.ts.map +1 -1
- package/dist/services/openalex/field-ranker.js +22 -5
- package/dist/services/openalex/field-ranker.js.map +1 -1
- package/dist/services/openalex/openalex-service.d.ts +12 -0
- package/dist/services/openalex/openalex-service.d.ts.map +1 -1
- package/dist/services/openalex/openalex-service.js +115 -19
- package/dist/services/openalex/openalex-service.js.map +1 -1
- package/package.json +7 -7
- package/server.json +3 -3
package/AGENTS.md
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# Developer Protocol
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**Server:** openalex-mcp-server
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**Version:** 0.7.
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**Framework:** [@cyanheads/mcp-ts-core](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) `^0.12.
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**Version:** 0.7.12
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**Framework:** [@cyanheads/mcp-ts-core](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) `^0.12.7`
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**Engines:** Bun ≥1.3.0, Node ≥24.0.0
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**MCP SDK:** `@modelcontextprotocol/server` ^2.0.0
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**Zod:** ^4.5.4
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**Declare contracts inline on each tool, even when similar across tools.** The contract is part of the tool's documented public surface — reading one tool definition file should give the full picture. Don't extract a shared `errors[]` constant; per-tool repetition is the intended cost of locality.
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The OpenAlex service throws factory errors (`notFound`, `rateLimited`, etc.) based on upstream status codes; those bubble through and are auto-classified. Baseline codes (`InternalError`, `ServiceUnavailable`, `Timeout`, `ValidationError`, `SerializationError`) bubble freely without needing to be declared on a contract.
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The OpenAlex service throws factory errors (`notFound`, `rateLimited`, etc.) based on upstream status codes; those bubble through and are auto-classified. Baseline codes (`InternalError`, `ServiceUnavailable`, `Timeout`, `ValidationError`, `SerializationError`, `RequestCancelled`) bubble freely without needing to be declared on a contract.
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**Fallback for ad-hoc throws:** error factories or plain `Error`.
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Directory-based, grouped by minor series via the `.x` semver-wildcard convention. Source of truth: `changelog/<major.minor>.x/<version>.md` (e.g. `changelog/0.6.x/0.6.12.md`) — one file per release, shipped in the npm package. At release, author the per-version file with a concrete version and date, then run `bun run changelog:build` to regenerate the rollup. `changelog/template.md` is a **pristine format reference** — never edited or moved. `CHANGELOG.md` is a **navigation index** regenerated by `bun run changelog:build` — devcheck hard-fails on drift; never hand-edit it.
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**Section order:** the Keep a Changelog sequence — Added, Changed, Deprecated, Removed, Fixed, Security — then `Dependencies` last. Include only sections with entries — don't ship empty headers.
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---
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## Publishing
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package/CLAUDE.md
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# Developer Protocol
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**Server:** openalex-mcp-server
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**Version:** 0.7.
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**Framework:** [@cyanheads/mcp-ts-core](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) `^0.12.
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**Version:** 0.7.12
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**Framework:** [@cyanheads/mcp-ts-core](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) `^0.12.7`
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**Engines:** Bun ≥1.3.0, Node ≥24.0.0
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**MCP SDK:** `@modelcontextprotocol/server` ^2.0.0
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**Zod:** ^4.5.4
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**Declare contracts inline on each tool, even when similar across tools.** The contract is part of the tool's documented public surface — reading one tool definition file should give the full picture. Don't extract a shared `errors[]` constant; per-tool repetition is the intended cost of locality.
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The OpenAlex service throws factory errors (`notFound`, `rateLimited`, etc.) based on upstream status codes; those bubble through and are auto-classified. Baseline codes (`InternalError`, `ServiceUnavailable`, `Timeout`, `ValidationError`, `SerializationError`) bubble freely without needing to be declared on a contract.
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The OpenAlex service throws factory errors (`notFound`, `rateLimited`, etc.) based on upstream status codes; those bubble through and are auto-classified. Baseline codes (`InternalError`, `ServiceUnavailable`, `Timeout`, `ValidationError`, `SerializationError`, `RequestCancelled`) bubble freely without needing to be declared on a contract.
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**Fallback for ad-hoc throws:** error factories or plain `Error`.
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@@ -316,6 +316,8 @@ When you complete a skill's checklist, check the boxes and add a completion time
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Directory-based, grouped by minor series via the `.x` semver-wildcard convention. Source of truth: `changelog/<major.minor>.x/<version>.md` (e.g. `changelog/0.6.x/0.6.12.md`) — one file per release, shipped in the npm package. At release, author the per-version file with a concrete version and date, then run `bun run changelog:build` to regenerate the rollup. `changelog/template.md` is a **pristine format reference** — never edited or moved. `CHANGELOG.md` is a **navigation index** regenerated by `bun run changelog:build` — devcheck hard-fails on drift; never hand-edit it.
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**Section order:** the Keep a Changelog sequence — Added, Changed, Deprecated, Removed, Fixed, Security — then `Dependencies` last. Include only sections with entries — don't ship empty headers.
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---
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## Publishing
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package/README.md
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<div align="center">
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[](./CHANGELOG.md) [](./LICENSE) [](https://github.com/users/cyanheads/packages/container/package/openalex-mcp-server) [](https://modelcontextprotocol.io/) [](https://www.npmjs.com/package/@cyanheads/openalex-mcp-server) [](https://www.typescriptlang.org/) [](https://bun.sh/)
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</div>
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| `openalex_search_entities` | Search, filter, sort, or retrieve by ID across all 8 entity types. |
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| `openalex_analyze_trends` | Group-by aggregation for trend and distribution analysis. |
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| `openalex_resolve_name` | Resolve a name or an identifier (DOI, ORCID, ROR, PMID,
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| `openalex_resolve_name` | Resolve a name or an identifier (DOI, ORCID, ROR, PMID, ISSN, OpenAlex ID) to an OpenAlex ID. |
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| `openalex_get_citation_graph` | Walk the citation graph one hop from a seed work: cites, cited_by, or related_to. |
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| `openalex_describe_fields` | List valid filter, group_by, and select field names for an entity type — call before building a query to avoid invalid-field errors. |
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Primary discovery and lookup tool. Covers all OpenAlex entity types (works, authors, sources, institutions, topics, keywords, publishers, funders).
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- Retrieve a single entity by ID (OpenAlex ID, DOI, ORCID, ROR, PMID, PMCID,
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- Retrieve a single entity by ID (OpenAlex ID, DOI, ORCID, ROR, PMID, ISSN), bare or in URL form, with the scheme prefix accepted in any case. A PMCID is recognized as well, bare or as a PubMed Central URL, but OpenAlex indexes no PMCIDs, so it resolves nothing — pass the work's PMID or DOI instead. `id` takes precedence: search criteria passed alongside it are not applied, and the response says which ones were dropped rather than echoing them back as though they ran. The search-only validations (semantic page cap, `sample` with `cursor`, `seed` without `sample`) are skipped too — a lookup is never rejected over parameters it ignores
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- Keyword search with boolean operators, quoted phrases, wildcards, and fuzzy matching
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- Exact and AI semantic search modes
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- Rich filter syntax: AND across fields, OR within fields (`us|gb`), NOT (`!us`), ranges (`2020-2024`), comparisons (`>100`)
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The front door for turning anything you have into an OpenAlex ID. **Always use this before filtering by entity** — names are ambiguous, IDs are not.
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- A name or partial name runs an autocomplete search: up to 10 matches with disambiguation hints, ~200ms
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- An identifier resolves deterministically to the single record it addresses — OpenAlex ID, DOI, ORCID, ROR, PMID,
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- An identifier resolves deterministically to the single record it addresses — OpenAlex ID, DOI, ORCID, ROR, PMID, or ISSN, bare or in URL form, with the scheme prefix accepted in any case. No `entity_type` needed: the identifier determines its own
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- A PMCID is recognized, bare or as a PubMed Central URL, but OpenAlex indexes no PMCIDs, so it resolves nothing — the empty result says so and points at converting it to a PMID or DOI
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- An identifier that matches nothing returns an empty result naming the scheme, not name-search advice
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- Optional entity type filter and field-level filters, applied to name queries
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- `cites`: works that cite the seed (incoming citations)
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- `cited_by`: works the seed cites (its reference list)
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- `related_to`: OpenAlex algorithmic "related works" (~8-30 typical, may be empty for less-cited seeds)
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- Accepts OpenAlex IDs, DOIs, PMIDs
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- Accepts OpenAlex IDs, DOIs, and PMIDs as `seed_id`, bare or in URL form; validates the seed via a singleton `/works/{id}` lookup before walking, so non-existent seeds surface as `NotFound`. A PMCID seed is recognized but OpenAlex indexes no PMCIDs, so it resolves nothing — the `NotFound` says so and points at converting it to a PMID or DOI
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- Stacks with `filters`/`sort`/`select` to narrow the graph (e.g., `publication_year=">2020"`, `is_oa="true"`)
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---
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- List valid fields for any entity type and context (`filter`, `group_by`, or `select`)
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- `group_by` returns the subset of the `filter` set OpenAlex can aggregate — raw date fields, `*.search` operators, and `from_*`/`to_*` range modifiers are excluded
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- Pass `query` (a partial or guessed name) to rank results by name similarity — surfaces the right field when you only know roughly what you want
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- Pass `query` (a partial or guessed name) to rank results by name similarity — surfaces the right field when you only know roughly what you want. Ranking reorders the list without shortening it, so a nested value's parent object is still reachable further down
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- Complements the ranked "did you mean" suggestions now appended to invalid-field errors on the search, trends, and citation-graph tools
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## Prompts
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OpenAlex-specific:
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- Typed API client with automatic ID normalization (DOI, ORCID, ROR, PMID, PMCID, ISSN, OpenAlex URLs)
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- Typed API client with automatic ID normalization (DOI, ORCID, ROR, PMID, PMCID, ISSN, OpenAlex and PubMed/PubMed Central URLs). A PMCID normalizes but resolves nothing — OpenAlex indexes none — so use the work's PMID or DOI
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- Abstract reconstruction from inverted indices — plaintext instead of OpenAlex's position-keyed encoding
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- HTTP status codes mapped to specific MCP error classes (400 → InvalidParams, 422 → ValidationError, 429 → RateLimited, etc.) with upstream messages surfaced
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- Every API-calling tool reports what the call spent against the OpenAlex daily budget and what is left of it, so a paginated sweep can be priced before it runs instead of ending in a 429. An account holding prepaid balance sees that too, since it keeps serving once the day's allowance is gone
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| `MCP_TRANSPORT_TYPE` | Transport: `stdio` or `http`. | `stdio` |
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| `MCP_HTTP_PORT` | Port for HTTP server. | `3010` |
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| `MCP_AUTH_MODE` | Auth mode: `none`, `jwt`, or `oauth`. | `none` |
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| `MCP_SESSION_MODE` | HTTP session handling: `auto`, `stateful`, or `stateless`. This server ships `stateless` — set by `Dockerfile` and by `.env.example`. | `auto` (resolves to `stateful`) |
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| `MCP_ALLOWED_ORIGINS` | Comma-separated allow-list of browser `Origin` headers for HTTP transport. Unset = loopback-only; set to `*` to disable. | _loopback only_ |
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---
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summary: "Uppercase ID schemes and PubMed URLs now resolve instead of 404ing, summary_stats leaves (h_index, i10_index, 2yr_mean_citedness) alias into select, and describe_fields ranking no longer hides a nested field's parent."
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breaking: false
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security: false
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---
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# 0.7.11 — 2026-09-08
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## Changed
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- **`normalizeId()` folds a recognized scheme prefix to lower case and adds a PubMed URL branch** (#66) — `PMID:`, `DOI:`, `ORCID:`, `ISSN:`, `ROR:`, `PMCID:` (any case) and bare `https://pubmed.ncbi.nlm.nih.gov/<pmid>` URLs now resolve instead of 404ing, across `openalex_search_entities` (`id`), `openalex_resolve_name` (`query`), and `openalex_get_citation_graph` (`seed_id`). The identifier value itself is never re-cased.
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- **`select` aliases `h_index`, `i10_index`, and `2yr_mean_citedness` to `summary_stats`** on `authors`, `sources`, `institutions`, `publishers`, and `funders` (#64) — these leaves live under `summary_stats` upstream and previously 400'd with a field list that named nothing resembling the request.
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- **`openalex_describe_fields`'s `query` reorders the full field list instead of truncating it** (#63) — a nested leaf's parent object (e.g. `summary_stats` for `h_index`) is now always reachable, since a lexical ranker can't score a leaf against its parent and previously dropped zero-overlap candidates entirely.
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- **`.env.example` activates `MCP_SESSION_MODE=stateless`** and `README.md` documents it in the `## Configuration` table (#65) — matches what the published Docker image already sets; the `src/index.ts` half is blocked on `cyanheads/mcp-ts-core#376`.
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- Framework skills synced to the versions shipped with `@cyanheads/mcp-ts-core` 0.12.6 and 0.12.7: `add-tool`, `api-errors`, `api-workers`, `design-mcp-server`, `field-test`, `git-wrapup`.
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## Dependencies
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Runtime:
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- `@biomejs/biome` `^2.5.11` → `^2.5.12`
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- `@types/node` `^26.4.0` → `^26.4.1`
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- `ignore` `^7.0.7` → `^7.0.8`
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- `tsc-alias` `^1.9.2` → `^1.9.4`
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- `vitest` `^4.1.11` → `^5.0.0`
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summary: "PMCID is now recognized as a PubMed Central URL too, and every PMCID miss says OpenAlex indexes none and points at converting to a PMID or DOI instead of the generic verify-the-ID advice."
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breaking: false
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security: false
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---
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# 0.7.12 — 2026-09-08
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## Fixed
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- **`normalizeId()` gains a PubMed Central URL branch** (#67) — `https://pmc.ncbi.nlm.nih.gov/articles/PMC…/` and the legacy `https://www.ncbi.nlm.nih.gov/pmc/articles/PMC…/` now normalize to `pmcid:PMC…` like the bare form, instead of being forwarded verbatim as a work ID, across `openalex_search_entities` (`id`), `openalex_resolve_name` (`query`), and `openalex_get_citation_graph` (`seed_id`).
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- **A `pmcid:`-scheme 404 now carries a PMCID-specific recovery hint** (#67) — OpenAlex indexes no PMCIDs, so the shared 404 mapping and the `resolve_name` miss notice now say to convert to a PMID or DOI instead of the generic "verify the ID format" text, which could never help a well-formed PMCID.
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- Tool descriptions and README bullets no longer present PMCID as an identifier that resolves — it's recognized, bare or as a PubMed Central URL, but resolves nothing.
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import { renderBudgetTrailer } from '
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import { renderBudgetTrailer } from '../render-budget.js';
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import { getOpenAlexService } from '../../../services/openalex/openalex-service.js';
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import { ENTITY_TYPES } from '../../../services/openalex/types.js';
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export const analyzeTrendsTool = tool('openalex_analyze_trends', {
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96
96
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readonly when: "OpenAlex has no work matching the seed_id.";
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97
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-
readonly recovery: "Verify seed_id with openalex_resolve_name, or pass a known OpenAlex work ID (W…), DOI, PMID, or
|
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97
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+
readonly recovery: "Verify seed_id with openalex_resolve_name, or pass a known OpenAlex work ID (W…), DOI, or PMID. OpenAlex indexes no PMCIDs, so convert a PMCID to a PMID or DOI before passing it.";
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98
98
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}], {
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99
99
|
readonly echo: z.ZodString;
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100
100
|
readonly totalCount: z.ZodNumber;
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@@ -4,8 +4,8 @@
|
|
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4
4
|
*/
|
|
5
5
|
import { tool, z } from '@cyanheads/mcp-ts-core';
|
|
6
6
|
import { JsonRpcErrorCode } from '@cyanheads/mcp-ts-core/errors';
|
|
7
|
-
import { renderBudgetTrailer } from '
|
|
8
|
-
import { renderEntityRecord } from '
|
|
7
|
+
import { renderBudgetTrailer } from '../render-budget.js';
|
|
8
|
+
import { renderEntityRecord } from '../render-entity-record.js';
|
|
9
9
|
import { getOpenAlexService } from '../../../services/openalex/openalex-service.js';
|
|
10
10
|
const OPENALEX_URL_PREFIX = 'https://openalex.org/';
|
|
11
11
|
/**
|
|
@@ -120,14 +120,14 @@ export const getCitationGraphTool = tool('openalex_get_citation_graph', {
|
|
|
120
120
|
reason: 'entity_not_found',
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|
121
121
|
code: JsonRpcErrorCode.NotFound,
|
|
122
122
|
when: 'OpenAlex has no work matching the seed_id.',
|
|
123
|
-
recovery: 'Verify seed_id with openalex_resolve_name, or pass a known OpenAlex work ID (W…), DOI, PMID, or
|
|
123
|
+
recovery: 'Verify seed_id with openalex_resolve_name, or pass a known OpenAlex work ID (W…), DOI, or PMID. OpenAlex indexes no PMCIDs, so convert a PMCID to a PMID or DOI before passing it.',
|
|
124
124
|
},
|
|
125
125
|
],
|
|
126
126
|
input: z.object({
|
|
127
127
|
seed_id: z
|
|
128
128
|
.string()
|
|
129
129
|
.min(1)
|
|
130
|
-
.describe('Seed work identifier. Accepts OpenAlex ID ("W2741809807"), DOI ("10.1038/nature12373" or full URL), PMID, or
|
|
130
|
+
.describe('Seed work identifier. Accepts OpenAlex ID ("W2741809807"), DOI ("10.1038/nature12373" or full URL), or PMID ("12345678" or "https://pubmed.ncbi.nlm.nih.gov/12345678"). A PMCID is recognized too, bare or as a PubMed Central URL, but OpenAlex indexes no PMCIDs, so it resolves nothing — pass the work\'s PMID or DOI instead. Use openalex_resolve_name first if you only have a title.'),
|
|
131
131
|
direction: z
|
|
132
132
|
.enum(DIRECTIONS)
|
|
133
133
|
.describe('"cites": works that cite seed_id (incoming citations). "cited_by": works that seed_id cites (its reference list). "related_to": OpenAlex algorithmically-related works (~8-30 typical, may be empty for less-cited seeds).'),
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"citation-graph.tool.js","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/citation-graph.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAGH,OAAO,EAAE,IAAI,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AACjE,OAAO,EAAE,mBAAmB,EAAE,MAAM,qCAAqC,CAAC;AAC1E,OAAO,EAAE,kBAAkB,EAAE,MAAM,4CAA4C,CAAC;AAChF,OAAO,EAAE,kBAAkB,EAAE,MAAM,yCAAyC,CAAC;AAG7E,MAAM,mBAAmB,GAAG,uBAAuB,CAAC;AAEpD;;;;;;;GAOG;AACH,KAAK,UAAU,mBAAmB,CAChC,OAA8C,EAC9C,MAAc,EACd,GAAuC;IAEvC,MAAM,MAAM,GAAG,MAAM,OAAO,CAAC,MAAM,CAAC,EAAE,UAAU,EAAE,OAAO,EAAE,EAAE,EAAE,MAAM,EAAE,MAAM,EAAE,CAAC,IAAI,CAAC,EAAE,EAAE,GAAG,CAAC,CAAC;IAC9F,MAAM,MAAM,GAAG,MAAM,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC;IACjC,IAAI,CAAC,MAAM,EAAE,EAAE,EAAE,CAAC;QAChB,MAAM,GAAG,CAAC,IAAI,CACZ,kBAAkB,EAClB,8BAA8B,MAAM,2BAA2B,EAC/D,EAAE,GAAG,GAAG,CAAC,WAAW,CAAC,kBAAkB,CAAC,EAAE,MAAM,EAAE,CACnD,CAAC;IACJ,CAAC;IACD,OAAO,MAAM,CAAC,EAAE,CAAC,OAAO,CAAC,mBAAmB,EAAE,EAAE,CAAC,CAAC;AACpD,CAAC;AAED,MAAM,UAAU,GAAG,CAAC,OAAO,EAAE,UAAU,EAAE,YAAY,CAAU,CAAC;AAGhE,MAAM,oBAAoB,GAAwB,IAAI,GAAG,CAAS,UAAU,CAAC,CAAC;AAE9E,SAAS,iBAAiB,CAAC,KAK1B;IACC,MAAM,KAAK,GAAG,CAAC,WAAW,KAAK,CAAC,OAAO,EAAE,EAAE,aAAa,KAAK,CAAC,SAAS,EAAE,CAAC,CAAC;IAC3E,IAAI,KAAK,CAAC,OAAO,IAAI,MAAM,CAAC,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QAC3D,KAAK,CAAC,IAAI,CAAC,WAAW,IAAI,CAAC,SAAS,CAAC,KAAK,CAAC,OAAO,CAAC,EAAE,CAAC,CAAC;IACzD,CAAC;IACD,IAAI,KAAK,CAAC,IAAI;QAAE,KAAK,CAAC,IAAI,CAAC,QAAQ,KAAK,CAAC,IAAI,EAAE,CAAC,CAAC;IACjD,OAAO,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;AAC3B,CAAC;AAED,MAAM,CAAC,MAAM,oBAAoB,GAAG,IAAI,CAAC,6BAA6B,EAAE;IACtE,WAAW,EACT,gdAAgd;IACld,SAAS,EACP,oHAAoH;IACtH,WAAW,EAAE,EAAE,YAAY,EAAE,IAAI,EAAE,cAAc,EAAE,IAAI,EAAE,aAAa,EAAE,IAAI,EAAE;IAC9E,MAAM,EAAE;QACN;YACE,MAAM,EAAE,cAAc;YACtB,IAAI,EAAE,gBAAgB,CAAC,WAAW;YAClC,IAAI,EAAE,iFAAiF;YACvF,SAAS,EAAE,IAAI;YACf,QAAQ,EACN,sFAAsF;SACzF;QACD;YACE,MAAM,EAAE,2BAA2B;YACnC,IAAI,EAAE,gBAAgB,CAAC,WAAW;YAClC,IAAI,EAAE,sDAAsD;YAC5D,SAAS,EAAE,KAAK;YAChB,QAAQ,EACN,6NAA6N;SAChO;QACD;YACE,MAAM,EAAE,kBAAkB;YAC1B,IAAI,EAAE,gBAAgB,CAAC,OAAO;YAC9B,IAAI,EAAE,uDAAuD;YAC7D,SAAS,EAAE,IAAI;YACf,QAAQ,EACN,kHAAkH;SACrH;QACD;YACE,MAAM,EAAE,sBAAsB;YAC9B,IAAI,EAAE,gBAAgB,CAAC,kBAAkB;YACzC,IAAI,EAAE,6HAA6H;YACnI,SAAS,EAAE,IAAI;YACf,QAAQ,EACN,uFAAuF;SAC1F;QACD;YACE,MAAM,EAAE,uBAAuB;YAC/B,IAAI,EAAE,gBAAgB,CAAC,YAAY;YACnC,IAAI,EAAE,2CAA2C;YACjD,QAAQ,EACN,uHAAuH;SAC1H;QACD;YACE,MAAM,EAAE,oBAAoB;YAC5B,IAAI,EAAE,gBAAgB,CAAC,SAAS;YAChC,IAAI,EAAE,8DAA8D;YACpE,QAAQ,EACN,yFAAyF;SAC5F;QACD;YACE,MAAM,EAAE,uBAAuB;YAC/B,IAAI,EAAE,gBAAgB,CAAC,aAAa;YACpC,IAAI,EAAE,qFAAqF;YAC3F,QAAQ,EACN,wJAAwJ;SAC3J;QACD;YACE,MAAM,EAAE,yBAAyB;YACjC,IAAI,EAAE,gBAAgB,CAAC,aAAa;YACpC,IAAI,EAAE,oEAAoE;YAC1E,QAAQ,EACN,+NAA+N;SAClO;QACD;YACE,MAAM,EAAE,2BAA2B;YACnC,IAAI,EAAE,gBAAgB,CAAC,aAAa;YACpC,IAAI,EAAE,8FAA8F;YACpG,QAAQ,EACN,6KAA6K;SAChL;QACD;YACE,MAAM,EAAE,+BAA+B;YACvC,IAAI,EAAE,gBAAgB,CAAC,aAAa;YACpC,IAAI,EAAE,8FAA8F;YACpG,QAAQ,EACN,kMAAkM;SACrM;QACD;YACE,MAAM,EAAE,+BAA+B;YACvC,IAAI,EAAE,gBAAgB,CAAC,aAAa;YACpC,IAAI,EAAE,yFAAyF;YAC/F,QAAQ,EACN,0IAA0I;SAC7I;QACD;YACE,MAAM,EAAE,qBAAqB;YAC7B,IAAI,EAAE,gBAAgB,CAAC,eAAe;YACtC,IAAI,EAAE,2FAA2F;YACjG,QAAQ,EACN,sFAAsF;SACzF;QACD;YACE,MAAM,EAAE,kBAAkB;YAC1B,IAAI,EAAE,gBAAgB,CAAC,QAAQ;YAC/B,IAAI,EAAE,4CAA4C;YAClD,QAAQ,EACN,
|
|
1
|
+
{"version":3,"file":"citation-graph.tool.js","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/citation-graph.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAGH,OAAO,EAAE,IAAI,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AACjE,OAAO,EAAE,mBAAmB,EAAE,MAAM,qCAAqC,CAAC;AAC1E,OAAO,EAAE,kBAAkB,EAAE,MAAM,4CAA4C,CAAC;AAChF,OAAO,EAAE,kBAAkB,EAAE,MAAM,yCAAyC,CAAC;AAG7E,MAAM,mBAAmB,GAAG,uBAAuB,CAAC;AAEpD;;;;;;;GAOG;AACH,KAAK,UAAU,mBAAmB,CAChC,OAA8C,EAC9C,MAAc,EACd,GAAuC;IAEvC,MAAM,MAAM,GAAG,MAAM,OAAO,CAAC,MAAM,CAAC,EAAE,UAAU,EAAE,OAAO,EAAE,EAAE,EAAE,MAAM,EAAE,MAAM,EAAE,CAAC,IAAI,CAAC,EAAE,EAAE,GAAG,CAAC,CAAC;IAC9F,MAAM,MAAM,GAAG,MAAM,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC;IACjC,IAAI,CAAC,MAAM,EAAE,EAAE,EAAE,CAAC;QAChB,MAAM,GAAG,CAAC,IAAI,CACZ,kBAAkB,EAClB,8BAA8B,MAAM,2BAA2B,EAC/D,EAAE,GAAG,GAAG,CAAC,WAAW,CAAC,kBAAkB,CAAC,EAAE,MAAM,EAAE,CACnD,CAAC;IACJ,CAAC;IACD,OAAO,MAAM,CAAC,EAAE,CAAC,OAAO,CAAC,mBAAmB,EAAE,EAAE,CAAC,CAAC;AACpD,CAAC;AAED,MAAM,UAAU,GAAG,CAAC,OAAO,EAAE,UAAU,EAAE,YAAY,CAAU,CAAC;AAGhE,MAAM,oBAAoB,GAAwB,IAAI,GAAG,CAAS,UAAU,CAAC,CAAC;AAE9E,SAAS,iBAAiB,CAAC,KAK1B;IACC,MAAM,KAAK,GAAG,CAAC,WAAW,KAAK,CAAC,OAAO,EAAE,EAAE,aAAa,KAAK,CAAC,SAAS,EAAE,CAAC,CAAC;IAC3E,IAAI,KAAK,CAAC,OAAO,IAAI,MAAM,CAAC,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QAC3D,KAAK,CAAC,IAAI,CAAC,WAAW,IAAI,CAAC,SAAS,CAAC,KAAK,CAAC,OAAO,CAAC,EAAE,CAAC,CAAC;IACzD,CAAC;IACD,IAAI,KAAK,CAAC,IAAI;QAAE,KAAK,CAAC,IAAI,CAAC,QAAQ,KAAK,CAAC,IAAI,EAAE,CAAC,CAAC;IACjD,OAAO,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;AAC3B,CAAC;AAED,MAAM,CAAC,MAAM,oBAAoB,GAAG,IAAI,CAAC,6BAA6B,EAAE;IACtE,WAAW,EACT,gdAAgd;IACld,SAAS,EACP,oHAAoH;IACtH,WAAW,EAAE,EAAE,YAAY,EAAE,IAAI,EAAE,cAAc,EAAE,IAAI,EAAE,aAAa,EAAE,IAAI,EAAE;IAC9E,MAAM,EAAE;QACN;YACE,MAAM,EAAE,cAAc;YACtB,IAAI,EAAE,gBAAgB,CAAC,WAAW;YAClC,IAAI,EAAE,iFAAiF;YACvF,SAAS,EAAE,IAAI;YACf,QAAQ,EACN,sFAAsF;SACzF;QACD;YACE,MAAM,EAAE,2BAA2B;YACnC,IAAI,EAAE,gBAAgB,CAAC,WAAW;YAClC,IAAI,EAAE,sDAAsD;YAC5D,SAAS,EAAE,KAAK;YAChB,QAAQ,EACN,6NAA6N;SAChO;QACD;YACE,MAAM,EAAE,kBAAkB;YAC1B,IAAI,EAAE,gBAAgB,CAAC,OAAO;YAC9B,IAAI,EAAE,uDAAuD;YAC7D,SAAS,EAAE,IAAI;YACf,QAAQ,EACN,kHAAkH;SACrH;QACD;YACE,MAAM,EAAE,sBAAsB;YAC9B,IAAI,EAAE,gBAAgB,CAAC,kBAAkB;YACzC,IAAI,EAAE,6HAA6H;YACnI,SAAS,EAAE,IAAI;YACf,QAAQ,EACN,uFAAuF;SAC1F;QACD;YACE,MAAM,EAAE,uBAAuB;YAC/B,IAAI,EAAE,gBAAgB,CAAC,YAAY;YACnC,IAAI,EAAE,2CAA2C;YACjD,QAAQ,EACN,uHAAuH;SAC1H;QACD;YACE,MAAM,EAAE,oBAAoB;YAC5B,IAAI,EAAE,gBAAgB,CAAC,SAAS;YAChC,IAAI,EAAE,8DAA8D;YACpE,QAAQ,EACN,yFAAyF;SAC5F;QACD;YACE,MAAM,EAAE,uBAAuB;YAC/B,IAAI,EAAE,gBAAgB,CAAC,aAAa;YACpC,IAAI,EAAE,qFAAqF;YAC3F,QAAQ,EACN,wJAAwJ;SAC3J;QACD;YACE,MAAM,EAAE,yBAAyB;YACjC,IAAI,EAAE,gBAAgB,CAAC,aAAa;YACpC,IAAI,EAAE,oEAAoE;YAC1E,QAAQ,EACN,+NAA+N;SAClO;QACD;YACE,MAAM,EAAE,2BAA2B;YACnC,IAAI,EAAE,gBAAgB,CAAC,aAAa;YACpC,IAAI,EAAE,8FAA8F;YACpG,QAAQ,EACN,6KAA6K;SAChL;QACD;YACE,MAAM,EAAE,+BAA+B;YACvC,IAAI,EAAE,gBAAgB,CAAC,aAAa;YACpC,IAAI,EAAE,8FAA8F;YACpG,QAAQ,EACN,kMAAkM;SACrM;QACD;YACE,MAAM,EAAE,+BAA+B;YACvC,IAAI,EAAE,gBAAgB,CAAC,aAAa;YACpC,IAAI,EAAE,yFAAyF;YAC/F,QAAQ,EACN,0IAA0I;SAC7I;QACD;YACE,MAAM,EAAE,qBAAqB;YAC7B,IAAI,EAAE,gBAAgB,CAAC,eAAe;YACtC,IAAI,EAAE,2FAA2F;YACjG,QAAQ,EACN,sFAAsF;SACzF;QACD;YACE,MAAM,EAAE,kBAAkB;YAC1B,IAAI,EAAE,gBAAgB,CAAC,QAAQ;YAC/B,IAAI,EAAE,4CAA4C;YAClD,QAAQ,EACN,oLAAoL;SACvL;KACF;IACD,KAAK,EAAE,CAAC,CAAC,MAAM,CAAC;QACd,OAAO,EAAE,CAAC;aACP,MAAM,EAAE;aACR,GAAG,CAAC,CAAC,CAAC;aACN,QAAQ,CACP,8XAA8X,CAC/X;QACH,SAAS,EAAE,CAAC;aACT,IAAI,CAAC,UAAU,CAAC;aAChB,QAAQ,CACP,4NAA4N,CAC7N;QACH,OAAO,EAAE,CAAC;aACP,MAAM,CAAC,CAAC,CAAC,MAAM,EAAE,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC;aAC9B,QAAQ,EAAE;aACV,QAAQ,CACP,0NAA0N,CAC3N;QACH,IAAI,EAAE,CAAC;aACJ,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,CACP,gTAAgT,CACjT;QACH,MAAM,EAAE,CAAC;aACN,KAAK,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC;aACjB,QAAQ,EAAE;aACV,QAAQ,CACP,0HAA0H,CAC3H;QACH,QAAQ,EAAE,CAAC;aACR,MAAM,EAAE;aACR,GAAG,EAAE;aACL,GAAG,CAAC,CAAC,CAAC;aACN,GAAG,CAAC,GAAG,CAAC;aACR,OAAO,CAAC,EAAE,CAAC;aACX,QAAQ,CAAC,uCAAuC,CAAC;QACpD,MAAM,EAAE,CAAC;aACN,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,CAAC,wEAAwE,CAAC;KACtF,CAAC;IACF,MAAM,EAAE,CAAC,CAAC,MAAM,CAAC;QACf,IAAI,EAAE,CAAC;aACJ,MAAM,CAAC;YACN,KAAK,EAAE,CAAC;iBACL,MAAM,EAAE;iBACR,QAAQ,CAAC,gEAAgE,CAAC;YAC7E,QAAQ,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,uBAAuB,CAAC;YACtD,WAAW,EAAE,CAAC;iBACX,MAAM,EAAE;iBACR,QAAQ,EAAE;iBACV,QAAQ,CAAC,gDAAgD,CAAC;SAC9D,CAAC;aACD,QAAQ,CAAC,uCAAuC,CAAC;QACpD,OAAO,EAAE,CAAC;aACP,KAAK,CACJ,CAAC;aACE,MAAM,CAAC;YACN,EAAE,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,mBAAmB,CAAC;YAC5C,YAAY,EAAE,CAAC;iBACZ,MAAM,EAAE;iBACR,QAAQ,EAAE;iBACV,QAAQ,CACP,qIAAqI,CACtI;SACJ,CAAC;aACD,WAAW,EAAE;aACb,QAAQ,CACP,0FAA0F,CAC3F,CACJ;aACA,QAAQ,CAAC,gDAAgD,CAAC;KAC9D,CAAC;IAEF,sFAAsF;IACtF,kFAAkF;IAClF,uEAAuE;IACvE,UAAU,EAAE;QACV,IAAI,EAAE,CAAC;aACJ,MAAM,EAAE;aACR,QAAQ,CACP,oHAAoH,CACrH;QACH,UAAU,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,8DAA8D,CAAC;QAC/F,MAAM,EAAE,CAAC;aACN,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,CACP,sKAAsK,CACvK;QACH,MAAM,EAAE,CAAC;aACN,MAAM,CAAC;YACN,OAAO,EAAE,CAAC;iBACP,MAAM,EAAE;iBACR,QAAQ,CACP,y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@@ -1 +1 @@
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1
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-
{"version":3,"file":"describe-fields.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/describe-fields.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AA2CjD,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;
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1
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+
{"version":3,"file":"describe-fields.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/describe-fields.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AA2CjD,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;wCAiE7B,CAAC"}
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@@ -3,7 +3,7 @@
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3
3
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* @module mcp-server/tools/definitions/describe-fields.tool
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4
4
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*/
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5
5
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import { tool, z } from '@cyanheads/mcp-ts-core';
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-
import {
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6
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+
import { rankAllFields } from '../../../services/openalex/field-ranker.js';
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7
7
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import { getFieldCatalog } from '../../../services/openalex/openalex-service.js';
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8
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import { ENTITY_TYPES } from '../../../services/openalex/types.js';
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9
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/** Contexts the caller can query; group_by resolves to the filter set upstream. */
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@@ -42,7 +42,7 @@ function isGroupableField(field) {
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42
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return !NON_GROUPABLE_DATE_FIELDS.has(field);
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}
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44
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export const describeFieldsTool = tool('openalex_describe_fields', {
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-
description: 'List valid field names for an OpenAlex entity type and context (filter, group_by, or select). Use proactively before constructing a filter or group_by to avoid invalid-field 400 errors. Pass `query` to
|
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45
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+
description: 'List valid field names for an OpenAlex entity type and context (filter, group_by, or select). Use proactively before constructing a filter or group_by to avoid invalid-field 400 errors. Pass `query` to rank the list by name similarity — useful when you have a partial or guessed field name. Ranking never drops a field: the full list comes back either way.',
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46
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sourceUrl: 'https://github.com/cyanheads/openalex-mcp-server/blob/main/src/mcp-server/tools/definitions/describe-fields.tool.ts',
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47
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annotations: { readOnlyHint: true, idempotentHint: true },
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48
48
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input: z.object({
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@@ -53,14 +53,14 @@ export const describeFieldsTool = tool('openalex_describe_fields', {
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query: z
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.string()
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.optional()
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56
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-
.describe('Optional partial or guessed field name to
|
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56
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+
.describe('Optional partial or guessed field name to sort results by similarity. Pass the field you tried (e.g. "funder") to get the closest matches first. The complete field list is returned either way — a query reorders it, it does not filter it, so a nested value\'s parent object (e.g. `summary_stats` for "h_index") is still reachable further down.'),
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57
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}),
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output: z.object({
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59
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entity_type: z.string().describe('Entity type queried.'),
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60
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context: z.string().describe('Context queried (filter, group_by, or select).'),
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fields: z
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.array(z.string())
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-
.describe('
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+
.describe('Every valid field name for this entity_type + context — the complete pool, ranked by similarity when `query` is provided. Never truncated, so this always holds `total` entries.'),
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64
64
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total: z.number().describe('Total number of valid fields for this entity_type + context.'),
|
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65
65
|
}),
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66
66
|
handler(input, ctx) {
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@@ -71,12 +71,11 @@ export const describeFieldsTool = tool('openalex_describe_fields', {
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71
71
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// aggregation keys so the tool never advertises a field analyze_trends will 400 on. filter
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72
72
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// and select keep the full set (dates / *.search / range-modifiers are valid there).
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73
73
|
const pool = input.context === 'group_by' ? catalogPool.filter(isGroupableField) : catalogPool;
|
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74
|
-
const fields = input.query ?
|
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74
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+
const fields = input.query ? rankAllFields(input.query, pool) : pool;
|
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75
75
|
ctx.log.info('Field catalog lookup', {
|
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76
76
|
entityType: input.entity_type,
|
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77
77
|
context: input.context,
|
|
78
78
|
query: input.query,
|
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79
|
-
matchCount: fields.length,
|
|
80
79
|
totalFields: pool.length,
|
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81
80
|
});
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82
81
|
return {
|
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@@ -92,10 +91,7 @@ export const describeFieldsTool = tool('openalex_describe_fields', {
|
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92
91
|
return [{ type: 'text', text: `${header}\n\nNo matches.` }];
|
|
93
92
|
}
|
|
94
93
|
const list = result.fields.map((f) => `- ${f}`).join('\n');
|
|
95
|
-
|
|
96
|
-
? `\n\n*(showing top ${result.fields.length} of ${result.total} by similarity)*`
|
|
97
|
-
: '';
|
|
98
|
-
return [{ type: 'text', text: `${header}:\n\n${list}${note}` }];
|
|
94
|
+
return [{ type: 'text', text: `${header}:\n\n${list}` }];
|
|
99
95
|
},
|
|
100
96
|
});
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97
|
//# sourceMappingURL=describe-fields.tool.js.map
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@@ -1 +1 @@
|
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1
|
-
{"version":3,"file":"describe-fields.tool.js","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/describe-fields.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAE,IAAI,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,
|
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1
|
+
{"version":3,"file":"describe-fields.tool.js","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/describe-fields.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAE,IAAI,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,aAAa,EAAE,MAAM,qCAAqC,CAAC;AACpE,OAAO,EAAE,eAAe,EAAE,MAAM,yCAAyC,CAAC;AAC1E,OAAO,EAAE,YAAY,EAAE,MAAM,8BAA8B,CAAC;AAE5D,mFAAmF;AACnF,MAAM,QAAQ,GAAG,CAAC,QAAQ,EAAE,UAAU,EAAE,QAAQ,CAAU,CAAC;AAG3D,+FAA+F;AAC/F,SAAS,cAAc,CAAC,OAAqB;IAC3C,OAAO,OAAO,KAAK,QAAQ,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,QAAQ,CAAC;AACpD,CAAC;AAED,wGAAwG;AACxG,MAAM,yBAAyB,GAAwB,IAAI,GAAG,CAAC;IAC7D,kBAAkB;IAClB,cAAc;IACd,cAAc;CACf,CAAC,CAAC;AAEH;;;;;;GAMG;AACH,MAAM,0BAA0B,GAAwB,IAAI,GAAG,CAAC,CAAC,wBAAwB,CAAC,CAAC,CAAC;AAE5F;;;;;GAKG;AACH,SAAS,gBAAgB,CAAC,KAAa;IACrC,IAAI,KAAK,CAAC,QAAQ,CAAC,SAAS,CAAC,IAAI,KAAK,CAAC,QAAQ,CAAC,eAAe,CAAC;QAAE,OAAO,KAAK,CAAC;IAC/E,IAAI,KAAK,CAAC,UAAU,CAAC,OAAO,CAAC,IAAI,KAAK,CAAC,UAAU,CAAC,KAAK,CAAC;QAAE,OAAO,KAAK,CAAC;IACvE,IAAI,0BAA0B,CAAC,GAAG,CAAC,KAAK,CAAC;QAAE,OAAO,KAAK,CAAC;IACxD,OAAO,CAAC,yBAAyB,CAAC,GAAG,CAAC,KAAK,CAAC,CAAC;AAC/C,CAAC;AAED,MAAM,CAAC,MAAM,kBAAkB,GAAG,IAAI,CAAC,0BAA0B,EAAE;IACjE,WAAW,EACT,sWAAsW;IACxW,SAAS,EACP,qHAAqH;IACvH,WAAW,EAAE,EAAE,YAAY,EAAE,IAAI,EAAE,cAAc,EAAE,IAAI,EAAE;IACzD,KAAK,EAAE,CAAC,CAAC,MAAM,CAAC;QACd,WAAW,EAAE,CAAC,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC,QAAQ,CAAC,0CAA0C,CAAC;QACtF,OAAO,EAAE,CAAC;aACP,IAAI,CAAC,QAAQ,CAAC;aACd,QAAQ,CACP,oPAAoP,CACrP;QACH,KAAK,EAAE,CAAC;aACL,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,CACP,wVAAwV,CACzV;KACJ,CAAC;IACF,MAAM,EAAE,CAAC,CAAC,MAAM,CAAC;QACf,WAAW,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,sBAAsB,CAAC;QACxD,OAAO,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,gDAAgD,CAAC;QAC9E,MAAM,EAAE,CAAC;aACN,KAAK,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC;aACjB,QAAQ,CACP,kLAAkL,CACnL;QACH,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,8DAA8D,CAAC;KAC3F,CAAC;IAEF,OAAO,CAAC,KAAK,EAAE,GAAG;QAChB,MAAM,OAAO,GAAG,eAAe,EAAE,CAAC;QAClC,MAAM,cAAc,GAAG,cAAc,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC;QACrD,MAAM,WAAW,GAAG,OAAO,CAAC,KAAK,CAAC,WAAW,CAAC,EAAE,CAAC,cAAc,CAAC,IAAI,EAAE,CAAC;QACvE,0FAA0F;QAC1F,2FAA2F;QAC3F,qFAAqF;QACrF,MAAM,IAAI,GAAG,KAAK,CAAC,OAAO,KAAK,UAAU,CAAC,CAAC,CAAC,WAAW,CAAC,MAAM,CAAC,gBAAgB,CAAC,CAAC,CAAC,CAAC,WAAW,CAAC;QAE/F,MAAM,MAAM,GAAG,KAAK,CAAC,KAAK,CAAC,CAAC,CAAC,aAAa,CAAC,KAAK,CAAC,KAAK,EAAE,IAAI,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC;QAErE,GAAG,CAAC,GAAG,CAAC,IAAI,CAAC,sBAAsB,EAAE;YACnC,UAAU,EAAE,KAAK,CAAC,WAAW;YAC7B,OAAO,EAAE,KAAK,CAAC,OAAO;YACtB,KAAK,EAAE,KAAK,CAAC,KAAK;YAClB,WAAW,EAAE,IAAI,CAAC,MAAM;SACzB,CAAC,CAAC;QAEH,OAAO;YACL,WAAW,EAAE,KAAK,CAAC,WAAW;YAC9B,OAAO,EAAE,KAAK,CAAC,OAAO;YACtB,MAAM;YACN,KAAK,EAAE,IAAI,CAAC,MAAM;SACnB,CAAC;IACJ,CAAC;IAED,MAAM,EAAE,CAAC,MAAM,EAAE,EAAE;QACjB,MAAM,MAAM,GAAG,KAAK,MAAM,CAAC,WAAW,UAAU,MAAM,CAAC,OAAO,QAAQ,MAAM,CAAC,KAAK,eAAe,CAAC;QAClG,IAAI,MAAM,CAAC,MAAM,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YAC/B,OAAO,CAAC,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,GAAG,MAAM,iBAAiB,EAAE,CAAC,CAAC;QAC9D,CAAC;QACD,MAAM,IAAI,GAAG,MAAM,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;QAC3D,OAAO,CAAC,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,GAAG,MAAM,QAAQ,IAAI,EAAE,EAAE,CAAC,CAAC;IAC3D,CAAC;CACF,CAAC,CAAC"}
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"resolve-name.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/resolve-name.tool.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;
|
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1
|
+
{"version":3,"file":"resolve-name.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/resolve-name.tool.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AASjE,eAAO,MAAM,eAAe;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EA0Q1B,CAAC"}
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@@ -5,11 +5,11 @@
|
|
|
5
5
|
*/
|
|
6
6
|
import { tool, z } from '@cyanheads/mcp-ts-core';
|
|
7
7
|
import { JsonRpcErrorCode } from '@cyanheads/mcp-ts-core/errors';
|
|
8
|
-
import { renderBudgetTrailer } from '
|
|
9
|
-
import { getOpenAlexService, inferIdentifier } from '../../../services/openalex/openalex-service.js';
|
|
8
|
+
import { renderBudgetTrailer } from '../render-budget.js';
|
|
9
|
+
import { getOpenAlexService, inferIdentifier, PMCID_NOT_INDEXED_HINT, } from '../../../services/openalex/openalex-service.js';
|
|
10
10
|
import { ENTITY_TYPES } from '../../../services/openalex/types.js';
|
|
11
11
|
export const resolveNameTool = tool('openalex_resolve_name', {
|
|
12
|
-
description:
|
|
12
|
+
description: "Resolve a name or an identifier to an OpenAlex ID. ALWAYS use this before filtering by entity — names are ambiguous, IDs are not. A name returns up to 10 autocomplete matches with disambiguation hints. An identifier — OpenAlex ID, DOI, ORCID, ROR, PMID, or ISSN, bare or in URL form — resolves directly to the one record it addresses, and needs no entity_type. A PMCID is recognized as well, bare or as a PubMed Central URL, but OpenAlex indexes no PMCIDs, so it resolves nothing — pass the work's PMID or DOI instead.",
|
|
13
13
|
sourceUrl: 'https://github.com/cyanheads/openalex-mcp-server/blob/main/src/mcp-server/tools/definitions/resolve-name.tool.ts',
|
|
14
14
|
annotations: { readOnlyHint: true, idempotentHint: true, openWorldHint: true },
|
|
15
15
|
errors: [
|
|
@@ -92,7 +92,7 @@ export const resolveNameTool = tool('openalex_resolve_name', {
|
|
|
92
92
|
query: z
|
|
93
93
|
.string()
|
|
94
94
|
.min(1)
|
|
95
|
-
.describe('Name or partial name to resolve. Also accepts an identifier, bare or in URL form — OpenAlex ID ("W2741809807", "F4320332161"), DOI ("10.1038/nature12373"), ORCID ("0000-0002-1825-0097"), ROR ("https://ror.org/00hx57361"), PMID ("12345678"
|
|
95
|
+
.describe('Name or partial name to resolve. Also accepts an identifier, bare or in URL form — OpenAlex ID ("W2741809807", "F4320332161"), DOI ("10.1038/nature12373"), ORCID ("0000-0002-1825-0097"), ROR ("https://ror.org/00hx57361"), PMID ("12345678" or "https://pubmed.ncbi.nlm.nih.gov/12345678"), ISSN ("1234-5678") — which resolves straight to that one record instead of running a name search. A PMCID ("PMC1234567" or a PubMed Central URL) is recognized but OpenAlex indexes no PMCIDs, so it resolves nothing — pass the work\'s PMID or DOI instead.'),
|
|
96
96
|
filters: z
|
|
97
97
|
.record(z.string(), z.string())
|
|
98
98
|
.optional()
|
|
@@ -191,7 +191,12 @@ export const resolveNameTool = tool('openalex_resolve_name', {
|
|
|
191
191
|
notices.push(`Resolved "${input.query}" by ${scheme} — it identifies one ${entity} directly, so ${ignored.join(' and ')} did not apply.`);
|
|
192
192
|
}
|
|
193
193
|
if (result.results.length === 0) {
|
|
194
|
-
|
|
194
|
+
// A PMCID is the one identifier whose miss says nothing about the identifier: it is
|
|
195
|
+
// well formed and OpenAlex still holds no record for it, so "check it for a typo"
|
|
196
|
+
// sends the caller to re-check something that was never wrong.
|
|
197
|
+
notices.push(identifier.scheme === 'pmcid'
|
|
198
|
+
? `No ${entity} in OpenAlex for PMCID "${input.query}". ${PMCID_NOT_INDEXED_HINT}`
|
|
199
|
+
: `No ${entity} in OpenAlex for ${scheme} "${input.query}". An identifier either resolves or does not — check it for a typo, or search for the entity by name instead.`);
|
|
195
200
|
}
|
|
196
201
|
}
|
|
197
202
|
else if (result.results.length === 0) {
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"resolve-name.tool.js","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/resolve-name.tool.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAE,IAAI,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AACjE,OAAO,EAAE,mBAAmB,EAAE,MAAM,qCAAqC,CAAC;AAC1E,OAAO,
|
|
1
|
+
{"version":3,"file":"resolve-name.tool.js","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/resolve-name.tool.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAE,IAAI,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AACjE,OAAO,EAAE,mBAAmB,EAAE,MAAM,qCAAqC,CAAC;AAC1E,OAAO,EACL,kBAAkB,EAClB,eAAe,EACf,sBAAsB,GACvB,MAAM,yCAAyC,CAAC;AACjD,OAAO,EAAE,YAAY,EAAE,MAAM,8BAA8B,CAAC;AAE5D,MAAM,CAAC,MAAM,eAAe,GAAG,IAAI,CAAC,uBAAuB,EAAE;IAC3D,WAAW,EACT,wgBAAwgB;IAC1gB,SAAS,EACP,kHAAkH;IACpH,WAAW,EAAE,EAAE,YAAY,EAAE,IAAI,EAAE,cAAc,EAAE,IAAI,EAAE,aAAa,EAAE,IAAI,EAAE;IAC9E,MAAM,EAAE;QACN;YACE,MAAM,EAAE,cAAc;YACtB,IAAI,EAAE,gBAAgB,CAAC,WAAW;YAClC,IAAI,EAAE,8FAA8F;YACpG,SAAS,EAAE,IAAI;YACf,QAAQ,EACN,sFAAsF;SACzF;QACD;YACE,MAAM,EAAE,2BAA2B;YACnC,IAAI,EAAE,gBAAgB,CAAC,WAAW;YAClC,IAAI,EAAE,sDAAsD;YAC5D,SAAS,EAAE,KAAK;YAChB,QAAQ,EACN,6NAA6N;SAChO;QACD;YACE,MAAM,EAAE,kBAAkB;YAC1B,IAAI,EAAE,gBAAgB,CAAC,OAAO;YAC9B,IAAI,EAAE,uDAAuD;YAC7D,SAAS,EAAE,IAAI;YACf,QAAQ,EACN,kHAAkH;SACrH;QACD;YACE,MAAM,EAAE,sBAAsB;YAC9B,IAAI,EAAE,gBAAgB,CAAC,kBAAkB;YACzC,IAAI,EAAE,6HAA6H;YACnI,SAAS,EAAE,IAAI;YACf,QAAQ,EACN,uFAAuF;SAC1F;QACD;YACE,MAAM,EAAE,uBAAuB;YAC/B,IAAI,EAAE,gBAAgB,CAAC,YAAY;YACnC,IAAI,EAAE,2CAA2C;YACjD,QAAQ,EACN,uHAAuH;SAC1H;QACD;YACE,MAAM,EAAE,oBAAoB;YAC5B,IAAI,EAAE,gBAAgB,CAAC,SAAS;YAChC,IAAI,EAAE,oDAAoD;YAC1D,QAAQ,EAAE,yEAAyE;SACpF;QACD;YACE,MAAM,EAAE,uBAAuB;YAC/B,IAAI,EAAE,gBAAgB,CAAC,aAAa;YACpC,IAAI,EAAE,wFAAwF;YAC9F,QAAQ,EACN,mIAAmI;SACtI;QACD;YACE,MAAM,EAAE,yBAAyB;YACjC,IAAI,EAAE,gBAAgB,CAAC,aAAa;YACpC,IAAI,EAAE,sFAAsF;YAC5F,QAAQ,EACN,0LAA0L;SAC7L;QACD;YACE,MAAM,EAAE,2BAA2B;YACnC,IAAI,EAAE,gBAAgB,CAAC,aAAa;YACpC,IAAI,EAAE,mHAAmH;YACzH,QAAQ,EACN,8IAA8I;SACjJ;QACD;YACE,MAAM,EAAE,+BAA+B;YACvC,IAAI,EAAE,gBAAgB,CAAC,aAAa;YACpC,IAAI,EAAE,sGAAsG;YAC5G,QAAQ,EACN,gKAAgK;SACnK;QACD;YACE,MAAM,EAAE,4BAA4B;YACpC,IAAI,EAAE,gBAAgB,CAAC,eAAe;YACtC,IAAI,EAAE,gFAAgF;YACtF,QAAQ,EACN,kGAAkG;SACrG;KACF;IACD,KAAK,EAAE,CAAC,CAAC,MAAM,CAAC;QACd,WAAW,EAAE,CAAC;aACX,IAAI,CAAC,YAAY,CAAC;aAClB,QAAQ,EAAE;aACV,QAAQ,CACP,qLAAqL,CACtL;QACH,KAAK,EAAE,CAAC;aACL,MAAM,EAAE;aACR,GAAG,CAAC,CAAC,CAAC;aACN,QAAQ,CACP,8hBAA8hB,CAC/hB;QACH,OAAO,EAAE,CAAC;aACP,MAAM,CAAC,CAAC,CAAC,MAAM,EAAE,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC;aAC9B,QAAQ,EAAE;aACV,QAAQ,CACP,8LAA8L,CAC/L;KACJ,CAAC;IACF,MAAM,EAAE,CAAC,CAAC,MAAM,CAAC;QACf,OAAO,EAAE,CAAC;aACP,KAAK,CACJ,CAAC;aACE,MAAM,CAAC;YACN,EAAE,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,cAAc,CAAC;YACvC,WAAW,EAAE,CAAC;iBACX,MAAM,EAAE;iBACR,QAAQ,EAAE;iBACV,QAAQ,CAAC,gDAAgD,CAAC;YAC7D,YAAY,EAAE,CAAC;iBACZ,MAAM,EAAE;iBACR,QAAQ,EAAE;iBACV,QAAQ,CACP,oLAAoL,CACrL;YACH,WAAW,EAAE,CAAC;iBACX,MAAM,EAAE;iBACR,QAAQ,CACP,6FAA6F,CAC9F;YACH,cAAc,EAAE,CAAC;iBACd,MAAM,EAAE;iBACR,QAAQ,CAAC,0DAA0D,CAAC;YACvE,WAAW,EAAE,CAAC;iBACX,MAAM,EAAE;iBACR,QAAQ,EAAE;iBACV,QAAQ,CAAC,8CAA8C,CAAC;YAC3D,IAAI,EAAE,CAAC;iBACJ,MAAM,EAAE;iBACR,QAAQ,EAAE;iBACV,QAAQ,CACP,4OAA4O,CAC7O;SACJ,CAAC;aACD,QAAQ,CACP,wGAAwG,CACzG,CACJ;aACA,QAAQ,CAAC,iCAAiC,CAAC;KAC/C,CAAC;IAEF,qFAAqF;IACrF,2FAA2F;IAC3F,uFAAuF;IACvF,qFAAqF;IACrF,UAAU,EAAE;QACV,MAAM,EAAE,CAAC;aACN,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,CACP,gMAAgM,CACjM;QACH,MAAM,EAAE,CAAC;aACN,MAAM,CAAC;YACN,OAAO,EAAE,CAAC;iBACP,MAAM,EAAE;iBACR,QAAQ,CACP,gKAAgK,CACjK;YACH,YAAY,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,sDAAsD,CAAC;YACzF,eAAe,EAAE,CAAC;iBACf,MAAM,EAAE;iBACR,QAAQ,CAAC,wDAAwD,CAAC;YACrE,mBAAmB,EAAE,CAAC;iBACnB,MAAM,EAAE;iBACR,QAAQ,EAAE;iBACV,QAAQ,CACP,mQAAmQ,CACpQ;SACJ,CAAC;aACD,QAAQ,EAAE;aACV,QAAQ,CACP,oNAAoN,CACrN;KACJ;IAED,iBAAiB,EAAE;QACjB,MAAM,EAAE,EAAE,MAAM,EAAE,mBAAmB,EAAE;KACxC;IAED,KAAK,CAAC,OAAO,CAAC,KAAK,EAAE,GAAG;QACtB,MAAM,OAAO,GAAG,kBAAkB,EAAE,CAAC;QACrC,wFAAwF;QACxF,0FAA0F;QAC1F,uFAAuF;QACvF,MAAM,UAAU,GAAG,eAAe,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC;QAEhD,MAAM,MAAM,GAAG,UAAU;YACvB,CAAC,CAAC,MAAM,OAAO,CAAC,iBAAiB,CAAC,UAAU,EAAE,GAAG,CAAC;YAClD,CAAC,CAAC,MAAM,OAAO,CAAC,YAAY,CACxB;gBACE,UAAU,EAAE,KAAK,CAAC,WAAW;gBAC7B,KAAK,EAAE,KAAK,CAAC,KAAK;gBAClB,OAAO,EAAE,KAAK,CAAC,OAAO;aACvB,EACD,GAAG,CACJ,CAAC;QAEN,GAAG,CAAC,GAAG,CAAC,IAAI,CAAC,eAAe,EAAE;YAC5B,KAAK,EAAE,KAAK,CAAC,KAAK;YAClB,UAAU,EAAE,UAAU,EAAE,UAAU,IAAI,KAAK,CAAC,WAAW,IAAI,KAAK;YAChE,WAAW,EAAE,UAAU,CAAC,CAAC,CAAC,UAAU,CAAC,MAAM,CAAC,CAAC,CAAC,cAAc;YAC5D,UAAU,EAAE,MAAM,CAAC,OAAO,CAAC,MAAM;SAClC,CAAC,CAAC;QAEH,MAAM,OAAO,GAAa,EAAE,CAAC;QAC7B,IAAI,UAAU,EAAE,CAAC;YACf,MAAM,MAAM,GACV,UAAU,CAAC,MAAM,KAAK,UAAU,CAAC,CAAC,CAAC,aAAa,CAAC,CAAC,CAAC,UAAU,CAAC,MAAM,CAAC,WAAW,EAAE,CAAC;YACrF,MAAM,MAAM,GAAG,UAAU,CAAC,UAAU,CAAC,OAAO,CAAC,IAAI,EAAE,EAAE,CAAC,CAAC;YACvD,MAAM,OAAO,GAAa,EAAE,CAAC;YAC7B,IAAI,KAAK,CAAC,WAAW,IAAI,KAAK,CAAC,WAAW,KAAK,UAAU,CAAC,UAAU,EAAE,CAAC;gBACrE,OAAO,CAAC,IAAI,CAAC,gBAAgB,KAAK,CAAC,WAAW,GAAG,CAAC,CAAC;YACrD,CAAC;YACD,IAAI,KAAK,CAAC,OAAO,IAAI,MAAM,CAAC,IAAI,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,MAAM,GAAG,CAAC;gBAAE,OAAO,CAAC,IAAI,CAAC,SAAS,CAAC,CAAC;YACpF,IAAI,OAAO,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;gBACvB,OAAO,CAAC,IAAI,CACV,aAAa,KAAK,CAAC,KAAK,QAAQ,MAAM,wBAAwB,MAAM,iBAAiB,OAAO,CAAC,IAAI,CAAC,OAAO,CAAC,iBAAiB,CAC5H,CAAC;YACJ,CAAC;YAC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@@ -4,8 +4,8 @@
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4
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*/
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5
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import { tool, z } from '@cyanheads/mcp-ts-core';
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import { JsonRpcErrorCode } from '@cyanheads/mcp-ts-core/errors';
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-
import { renderBudgetTrailer } from '
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import { renderEntityRecord } from '
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import { renderBudgetTrailer } from '../render-budget.js';
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import { renderEntityRecord } from '../render-entity-record.js';
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import { getOpenAlexService } from '../../../services/openalex/openalex-service.js';
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import { ENTITY_TYPES } from '../../../services/openalex/types.js';
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const SEMANTIC_PER_PAGE_CAP = 50;
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@@ -161,7 +161,7 @@ export const searchEntitiesTool = tool('openalex_search_entities', {
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id: z
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.string()
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.optional()
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.describe('Retrieve a single entity by ID. Supports: OpenAlex ID ("W2741809807"), DOI ("10.1038/nature12373"), ORCID ("0000-0002-1825-0097"), ROR ("https://ror.org/00hx57361"), PMID ("12345678"
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164
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.describe('Retrieve a single entity by ID. Supports: OpenAlex ID ("W2741809807"), DOI ("10.1038/nature12373"), ORCID ("0000-0002-1825-0097"), ROR ("https://ror.org/00hx57361"), PMID ("12345678" or "https://pubmed.ncbi.nlm.nih.gov/12345678"), ISSN ("1234-5678"). A PMCID is recognized too, bare ("PMC1234567") or as a PubMed Central URL, but OpenAlex indexes no PMCIDs, so it resolves nothing — pass the work\'s PMID or DOI instead. When provided, `query`, `search_mode`, `filters`, `sort`, `sample`, and `seed` are not applied — the returned record is the entity at that ID regardless of them, and the response `notice` names any you passed. `select` still applies: the curated per-entity-type default is returned unless you pass `select` (use `["*"]` for the complete record). To filter, drop `id` and search. Use openalex_resolve_name to find the ID if unknown.'),
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query: z
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.string()
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.optional()
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@@ -181,7 +181,7 @@ export const searchEntitiesTool = tool('openalex_search_entities', {
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select: z
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.array(z.string())
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.optional()
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184
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.describe('OpenAlex top-level field names to return. Always returned: `id`, `display_name` — additional fields you list are appended. A curated default per entity type applies to both searches and single-entity (`id`) lookups; pass field names to override it, or `["*"]` to retrieve the complete record (every field). Invalid field names produce an error identifying the rejected field. Example: ["doi", "authorships", "primary_topic"].'),
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184
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.describe('OpenAlex top-level field names to return. Always returned: `id`, `display_name` — additional fields you list are appended. A curated default per entity type applies to both searches and single-entity (`id`) lookups; pass field names to override it, or `["*"]` to retrieve the complete record (every field). Only top-level fields project, so a nested value is requested by its parent object: bibliometrics (`h_index`, `i10_index`, `2yr_mean_citedness`) live under `summary_stats` on authors, sources, institutions, publishers, and funders, and naming a leaf returns that object. Invalid field names produce an error identifying the rejected field. Example: ["doi", "authorships", "primary_topic"].'),
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per_page: z
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.number()
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.int()
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@@ -1 +1 @@
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1
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-
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@@ -11,9 +11,22 @@
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11
11
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* Return the top-N candidate field names from `pool` ranked by similarity
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12
12
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* to `query`. Results are ordered by score descending.
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13
13
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*
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14
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+
* Zero-scoring candidates are dropped — this backs the "did you mean" line on an
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15
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+
* invalid-field error, where a candidate sharing nothing with the rejected name is noise.
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16
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+
* To browse a whole pool, use `rankAllFields`: a lexical scorer cannot rank a nested leaf
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17
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+
* against its parent, so filtering there removes the answer instead of deprioritizing it.
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18
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+
*
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14
19
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* @param query - The rejected field name submitted by the caller.
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15
20
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* @param pool - All valid field names for this entity_type + context.
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16
21
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* @param topN - Maximum number of suggestions to return. Default 5.
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17
22
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*/
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18
23
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export declare function rankFields(query: string, pool: string[], topN?: number): string[];
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24
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+
/**
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25
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+
* Rank the entire `pool` against `query`, retaining every member. Zero-scoring candidates
|
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26
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+
* sort last rather than being dropped: a query reorders the pool, it does not reduce it.
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27
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+
*
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28
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+
* @param query - The partial or guessed field name submitted by the caller.
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29
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+
* @param pool - All valid field names for this entity_type + context.
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30
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+
*/
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31
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+
export declare function rankAllFields(query: string, pool: string[]): string[];
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19
32
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//# sourceMappingURL=field-ranker.d.ts.map
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"field-ranker.d.ts","sourceRoot":"","sources":["../../../src/services/openalex/field-ranker.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;
|
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1
|
+
{"version":3,"file":"field-ranker.d.ts","sourceRoot":"","sources":["../../../src/services/openalex/field-ranker.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AA2FH;;;;;;;;;;;;GAYG;AACH,wBAAgB,UAAU,CAAC,KAAK,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,EAAE,EAAE,IAAI,SAAI,GAAG,MAAM,EAAE,CAK5E;AAED;;;;;;GAMG;AACH,wBAAgB,aAAa,CAAC,KAAK,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,EAAE,GAAG,MAAM,EAAE,CAErE"}
|
|
@@ -81,22 +81,39 @@ function score(query, candidate) {
|
|
|
81
81
|
const jw = jaroWinkler(q, c);
|
|
82
82
|
return Math.min(1.0, 0.55 * tokenOverlap + 0.25 * jw + subsetBonus);
|
|
83
83
|
}
|
|
84
|
+
/** Score every candidate, ordered by score descending. Sort is stable, so ties keep pool order. */
|
|
85
|
+
function rankByScore(query, pool) {
|
|
86
|
+
return pool
|
|
87
|
+
.map((candidate) => ({ candidate, s: score(query, candidate) }))
|
|
88
|
+
.sort((a, b) => b.s - a.s);
|
|
89
|
+
}
|
|
84
90
|
/**
|
|
85
91
|
* Return the top-N candidate field names from `pool` ranked by similarity
|
|
86
92
|
* to `query`. Results are ordered by score descending.
|
|
87
93
|
*
|
|
94
|
+
* Zero-scoring candidates are dropped — this backs the "did you mean" line on an
|
|
95
|
+
* invalid-field error, where a candidate sharing nothing with the rejected name is noise.
|
|
96
|
+
* To browse a whole pool, use `rankAllFields`: a lexical scorer cannot rank a nested leaf
|
|
97
|
+
* against its parent, so filtering there removes the answer instead of deprioritizing it.
|
|
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|
+
*
|
|
88
99
|
* @param query - The rejected field name submitted by the caller.
|
|
89
100
|
* @param pool - All valid field names for this entity_type + context.
|
|
90
101
|
* @param topN - Maximum number of suggestions to return. Default 5.
|
|
91
102
|
*/
|
|
92
103
|
export function rankFields(query, pool, topN = 5) {
|
|
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|
-
|
|
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|
-
return [];
|
|
95
|
-
return pool
|
|
96
|
-
.map((candidate) => ({ candidate, s: score(query, candidate) }))
|
|
104
|
+
return rankByScore(query, pool)
|
|
97
105
|
.filter(({ s }) => s > 0)
|
|
98
|
-
.sort((a, b) => b.s - a.s)
|
|
99
106
|
.slice(0, topN)
|
|
100
107
|
.map(({ candidate }) => candidate);
|
|
101
108
|
}
|
|
109
|
+
/**
|
|
110
|
+
* Rank the entire `pool` against `query`, retaining every member. Zero-scoring candidates
|
|
111
|
+
* sort last rather than being dropped: a query reorders the pool, it does not reduce it.
|
|
112
|
+
*
|
|
113
|
+
* @param query - The partial or guessed field name submitted by the caller.
|
|
114
|
+
* @param pool - All valid field names for this entity_type + context.
|
|
115
|
+
*/
|
|
116
|
+
export function rankAllFields(query, pool) {
|
|
117
|
+
return rankByScore(query, pool).map(({ candidate }) => candidate);
|
|
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|
+
}
|
|
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119
|
//# sourceMappingURL=field-ranker.js.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"field-ranker.js","sourceRoot":"","sources":["../../../src/services/openalex/field-ranker.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,qDAAqD;AACrD,SAAS,QAAQ,CAAC,KAAa;IAC7B,OAAO,IAAI,GAAG,CAAC,KAAK,CAAC,WAAW,EAAE,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC;AACpD,CAAC;AAED,2DAA2D;AAC3D,SAAS,IAAI,CAAC,EAAU,EAAE,EAAU;IAClC,IAAI,EAAE,KAAK,EAAE;QAAE,OAAO,CAAC,CAAC;IACxB,IAAI,EAAE,CAAC,MAAM,KAAK,CAAC,IAAI,EAAE,CAAC,MAAM,KAAK,CAAC;QAAE,OAAO,CAAC,CAAC;IAEjD,MAAM,WAAW,GAAG,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,MAAM,EAAE,EAAE,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC,CAAC;IACpF,MAAM,SAAS,GAAG,IAAI,KAAK,CAAU,EAAE,CAAC,MAAM,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;IAC5D,MAAM,SAAS,GAAG,IAAI,KAAK,CAAU,EAAE,CAAC,MAAM,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;IAE5D,IAAI,OAAO,GAAG,CAAC,CAAC;IAChB,IAAI,cAAc,GAAG,CAAC,CAAC;IAEvB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,EAAE,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;QACnC,MAAM,KAAK,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC,GAAG,WAAW,CAAC,CAAC;QAC3C,MAAM,GAAG,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,GAAG,WAAW,GAAG,CAAC,EAAE,EAAE,CAAC,MAAM,CAAC,CAAC;QACrD,KAAK,IAAI,CAAC,GAAG,KAAK,EAAE,CAAC,GAAG,GAAG,EAAE,CAAC,EAAE,EAAE,CAAC;YACjC,IAAI,SAAS,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC,CAAC,KAAK,EAAE,CAAC,CAAC,CAAC;gBAAE,SAAS;YAC9C,SAAS,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC;YACpB,SAAS,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC;YACpB,OAAO,EAAE,CAAC;YACV,MAAM;QACR,CAAC;IACH,CAAC;IAED,IAAI,OAAO,KAAK,CAAC;QAAE,OAAO,CAAC,CAAC;IAE5B,IAAI,CAAC,GAAG,CAAC,CAAC;IACV,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,EAAE,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;QACnC,IAAI,CAAC,SAAS,CAAC,CAAC,CAAC;YAAE,SAAS;QAC5B,OAAO,CAAC,SAAS,CAAC,CAAC,CAAC;YAAE,CAAC,EAAE,CAAC;QAC1B,IAAI,EAAE,CAAC,CAAC,CAAC,KAAK,EAAE,CAAC,CAAC,CAAC;YAAE,cAAc,EAAE,CAAC;QACtC,CAAC,EAAE,CAAC;IACN,CAAC;IAED,OAAO,CAAC,OAAO,GAAG,EAAE,CAAC,MAAM,GAAG,OAAO,GAAG,EAAE,CAAC,MAAM,GAAG,CAAC,OAAO,GAAG,cAAc,GAAG,CAAC,CAAC,GAAG,OAAO,CAAC,GAAG,CAAC,CAAC;AACpG,CAAC;AAED,sFAAsF;AACtF,SAAS,WAAW,CAAC,EAAU,EAAE,EAAU;IACzC,MAAM,CAAC,GAAG,IAAI,CAAC,EAAE,EAAE,EAAE,CAAC,CAAC;IACvB,IAAI,CAAC,GAAG,GAAG;QAAE,OAAO,CAAC,CAAC;IAEtB,IAAI,MAAM,GAAG,CAAC,CAAC;IACf,MAAM,GAAG,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,MAAM,EAAE,EAAE,CAAC,MAAM,CAAC,CAAC,CAAC;IACxD,OAAO,MAAM,GAAG,GAAG,IAAI,EAAE,CAAC,MAAM,CAAC,KAAK,EAAE,CAAC,MAAM,CAAC;QAAE,MAAM,EAAE,CAAC;IAE3D,OAAO,CAAC,GAAG,MAAM,GAAG,GAAG,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC;AACpC,CAAC;AAED;;;;;GAKG;AACH,SAAS,KAAK,CAAC,KAAa,EAAE,SAAiB;IAC7C,MAAM,CAAC,GAAG,KAAK,CAAC,WAAW,EAAE,CAAC;IAC9B,MAAM,CAAC,GAAG,SAAS,CAAC,WAAW,EAAE,CAAC;IAElC,IAAI,CAAC,KAAK,CAAC;QAAE,OAAO,GAAG,CAAC;IAExB,MAAM,OAAO,GAAG,QAAQ,CAAC,CAAC,CAAC,CAAC;IAC5B,MAAM,OAAO,GAAG,QAAQ,CAAC,CAAC,CAAC,CAAC;IAE5B,MAAM,YAAY,GAAG,CAAC,GAAG,OAAO,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC;IACvE,MAAM,KAAK,GAAG,IAAI,GAAG,CAAC,CAAC,GAAG,OAAO,EAAE,GAAG,OAAO,CAAC,CAAC,CAAC,IAAI,CAAC;IACrD,MAAM,YAAY,GAAG,KAAK,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,YAAY,GAAG,KAAK,CAAC;IAE5D,+DAA+D;IAC/D,MAAM,QAAQ,GAAG,CAAC,GAAG,OAAO,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;IAC3D,MAAM,WAAW,GAAG,QAAQ,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;IAEvC,MAAM,EAAE,GAAG,WAAW,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC;IAE7B,OAAO,IAAI,CAAC,GAAG,CAAC,GAAG,EAAE,IAAI,GAAG,YAAY,GAAG,IAAI,GAAG,EAAE,GAAG,WAAW,CAAC,CAAC;AACtE,CAAC;AAED
|
|
1
|
+
{"version":3,"file":"field-ranker.js","sourceRoot":"","sources":["../../../src/services/openalex/field-ranker.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,qDAAqD;AACrD,SAAS,QAAQ,CAAC,KAAa;IAC7B,OAAO,IAAI,GAAG,CAAC,KAAK,CAAC,WAAW,EAAE,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC;AACpD,CAAC;AAED,2DAA2D;AAC3D,SAAS,IAAI,CAAC,EAAU,EAAE,EAAU;IAClC,IAAI,EAAE,KAAK,EAAE;QAAE,OAAO,CAAC,CAAC;IACxB,IAAI,EAAE,CAAC,MAAM,KAAK,CAAC,IAAI,EAAE,CAAC,MAAM,KAAK,CAAC;QAAE,OAAO,CAAC,CAAC;IAEjD,MAAM,WAAW,GAAG,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,MAAM,EAAE,EAAE,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC,CAAC;IACpF,MAAM,SAAS,GAAG,IAAI,KAAK,CAAU,EAAE,CAAC,MAAM,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;IAC5D,MAAM,SAAS,GAAG,IAAI,KAAK,CAAU,EAAE,CAAC,MAAM,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;IAE5D,IAAI,OAAO,GAAG,CAAC,CAAC;IAChB,IAAI,cAAc,GAAG,CAAC,CAAC;IAEvB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,EAAE,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;QACnC,MAAM,KAAK,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC,GAAG,WAAW,CAAC,CAAC;QAC3C,MAAM,GAAG,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,GAAG,WAAW,GAAG,CAAC,EAAE,EAAE,CAAC,MAAM,CAAC,CAAC;QACrD,KAAK,IAAI,CAAC,GAAG,KAAK,EAAE,CAAC,GAAG,GAAG,EAAE,CAAC,EAAE,EAAE,CAAC;YACjC,IAAI,SAAS,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC,CAAC,KAAK,EAAE,CAAC,CAAC,CAAC;gBAAE,SAAS;YAC9C,SAAS,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC;YACpB,SAAS,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC;YACpB,OAAO,EAAE,CAAC;YACV,MAAM;QACR,CAAC;IACH,CAAC;IAED,IAAI,OAAO,KAAK,CAAC;QAAE,OAAO,CAAC,CAAC;IAE5B,IAAI,CAAC,GAAG,CAAC,CAAC;IACV,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,EAAE,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;QACnC,IAAI,CAAC,SAAS,CAAC,CAAC,CAAC;YAAE,SAAS;QAC5B,OAAO,CAAC,SAAS,CAAC,CAAC,CAAC;YAAE,CAAC,EAAE,CAAC;QAC1B,IAAI,EAAE,CAAC,CAAC,CAAC,KAAK,EAAE,CAAC,CAAC,CAAC;YAAE,cAAc,EAAE,CAAC;QACtC,CAAC,EAAE,CAAC;IACN,CAAC;IAED,OAAO,CAAC,OAAO,GAAG,EAAE,CAAC,MAAM,GAAG,OAAO,GAAG,EAAE,CAAC,MAAM,GAAG,CAAC,OAAO,GAAG,cAAc,GAAG,CAAC,CAAC,GAAG,OAAO,CAAC,GAAG,CAAC,CAAC;AACpG,CAAC;AAED,sFAAsF;AACtF,SAAS,WAAW,CAAC,EAAU,EAAE,EAAU;IACzC,MAAM,CAAC,GAAG,IAAI,CAAC,EAAE,EAAE,EAAE,CAAC,CAAC;IACvB,IAAI,CAAC,GAAG,GAAG;QAAE,OAAO,CAAC,CAAC;IAEtB,IAAI,MAAM,GAAG,CAAC,CAAC;IACf,MAAM,GAAG,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,MAAM,EAAE,EAAE,CAAC,MAAM,CAAC,CAAC,CAAC;IACxD,OAAO,MAAM,GAAG,GAAG,IAAI,EAAE,CAAC,MAAM,CAAC,KAAK,EAAE,CAAC,MAAM,CAAC;QAAE,MAAM,EAAE,CAAC;IAE3D,OAAO,CAAC,GAAG,MAAM,GAAG,GAAG,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC;AACpC,CAAC;AAED;;;;;GAKG;AACH,SAAS,KAAK,CAAC,KAAa,EAAE,SAAiB;IAC7C,MAAM,CAAC,GAAG,KAAK,CAAC,WAAW,EAAE,CAAC;IAC9B,MAAM,CAAC,GAAG,SAAS,CAAC,WAAW,EAAE,CAAC;IAElC,IAAI,CAAC,KAAK,CAAC;QAAE,OAAO,GAAG,CAAC;IAExB,MAAM,OAAO,GAAG,QAAQ,CAAC,CAAC,CAAC,CAAC;IAC5B,MAAM,OAAO,GAAG,QAAQ,CAAC,CAAC,CAAC,CAAC;IAE5B,MAAM,YAAY,GAAG,CAAC,GAAG,OAAO,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC;IACvE,MAAM,KAAK,GAAG,IAAI,GAAG,CAAC,CAAC,GAAG,OAAO,EAAE,GAAG,OAAO,CAAC,CAAC,CAAC,IAAI,CAAC;IACrD,MAAM,YAAY,GAAG,KAAK,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,YAAY,GAAG,KAAK,CAAC;IAE5D,+DAA+D;IAC/D,MAAM,QAAQ,GAAG,CAAC,GAAG,OAAO,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;IAC3D,MAAM,WAAW,GAAG,QAAQ,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;IAEvC,MAAM,EAAE,GAAG,WAAW,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC;IAE7B,OAAO,IAAI,CAAC,GAAG,CAAC,GAAG,EAAE,IAAI,GAAG,YAAY,GAAG,IAAI,GAAG,EAAE,GAAG,WAAW,CAAC,CAAC;AACtE,CAAC;AAED,mGAAmG;AACnG,SAAS,WAAW,CAAC,KAAa,EAAE,IAAc;IAChD,OAAO,IAAI;SACR,GAAG,CAAC,CAAC,SAAS,EAAE,EAAE,CAAC,CAAC,EAAE,SAAS,EAAE,CAAC,EAAE,KAAK,CAAC,KAAK,EAAE,SAAS,CAAC,EAAE,CAAC,CAAC;SAC/D,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;AAC/B,CAAC;AAED;;;;;;;;;;;;GAYG;AACH,MAAM,UAAU,UAAU,CAAC,KAAa,EAAE,IAAc,EAAE,IAAI,GAAG,CAAC;IAChE,OAAO,WAAW,CAAC,KAAK,EAAE,IAAI,CAAC;SAC5B,MAAM,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC;SACxB,KAAK,CAAC,CAAC,EAAE,IAAI,CAAC;SACd,GAAG,CAAC,CAAC,EAAE,SAAS,EAAE,EAAE,EAAE,CAAC,SAAS,CAAC,CAAC;AACvC,CAAC;AAED;;;;;;GAMG;AACH,MAAM,UAAU,aAAa,CAAC,KAAa,EAAE,IAAc;IACzD,OAAO,WAAW,CAAC,KAAK,EAAE,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,EAAE,SAAS,EAAE,EAAE,EAAE,CAAC,SAAS,CAAC,CAAC;AACpE,CAAC"}
|
|
@@ -4,6 +4,14 @@
|
|
|
4
4
|
*/
|
|
5
5
|
import type { Context } from '@cyanheads/mcp-ts-core';
|
|
6
6
|
import { type AnalyzeParams, type AnalyzeResult, type AutocompleteParams, type AutocompleteRecord, type AutocompleteResult, type EntityRecord, type EntityType, type SearchParams, type SearchResult } from './types.js';
|
|
7
|
+
/**
|
|
8
|
+
* Recovery for a PMCID that reached OpenAlex and came back with nothing. OpenAlex indexes no
|
|
9
|
+
* PMCIDs — `has_pmcid:true` matches zero works and a work's `ids` object never carries the key —
|
|
10
|
+
* so a PMCID cannot resolve however well formed it is, and the generic "verify the ID format"
|
|
11
|
+
* advice sends the caller back to retry an identifier that can never work. Shared by the 404
|
|
12
|
+
* mapping here and the `openalex_resolve_name` miss notice so both say the same thing.
|
|
13
|
+
*/
|
|
14
|
+
export declare const PMCID_NOT_INDEXED_HINT = "OpenAlex indexes no PMCIDs, so a PMCID resolves nothing however it is written. Convert it to a PMID or DOI \u2014 the NCBI ID Converter (https://www.ncbi.nlm.nih.gov/pmc/tools/idconv/) does this \u2014 and retry with that identifier.";
|
|
7
15
|
/**
|
|
8
16
|
* Detect ID format and return the API path segment.
|
|
9
17
|
* "10.1038/nature12373" → "doi:10.1038/nature12373"
|
|
@@ -13,6 +21,10 @@ import { type AnalyzeParams, type AnalyzeResult, type AutocompleteParams, type A
|
|
|
13
21
|
* "https://ror.org/00hx57361" → "ror:https://ror.org/00hx57361"
|
|
14
22
|
* "013meh722" → "ror:013meh722"
|
|
15
23
|
* "PMC1234567" → "pmcid:PMC1234567"
|
|
24
|
+
* "https://pmc.ncbi.nlm.nih.gov/articles/PMC1234567/" → "pmcid:PMC1234567"
|
|
25
|
+
* "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1234567/" → "pmcid:PMC1234567"
|
|
26
|
+
* "https://pubmed.ncbi.nlm.nih.gov/21491125" → "pmid:21491125"
|
|
27
|
+
* "PMID:21491125" → "pmid:21491125"
|
|
16
28
|
* "W2741809807" → "W2741809807"
|
|
17
29
|
*/
|
|
18
30
|
export declare function normalizeId(id: string): string;
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"openalex-service.d.ts","sourceRoot":"","sources":["../../../src/services/openalex/openalex-service.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,wBAAwB,CAAC;AAsBtD,OAAO,EACL,KAAK,aAAa,EAClB,KAAK,aAAa,EAClB,KAAK,kBAAkB,EACvB,KAAK,kBAAkB,EACvB,KAAK,kBAAkB,EAGvB,KAAK,YAAY,EACjB,KAAK,UAAU,EACf,KAAK,YAAY,EACjB,KAAK,YAAY,EAClB,MAAM,YAAY,CAAC;
|
|
1
|
+
{"version":3,"file":"openalex-service.d.ts","sourceRoot":"","sources":["../../../src/services/openalex/openalex-service.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,wBAAwB,CAAC;AAsBtD,OAAO,EACL,KAAK,aAAa,EAClB,KAAK,aAAa,EAClB,KAAK,kBAAkB,EACvB,KAAK,kBAAkB,EACvB,KAAK,kBAAkB,EAGvB,KAAK,YAAY,EACjB,KAAK,UAAU,EACf,KAAK,YAAY,EACjB,KAAK,YAAY,EAClB,MAAM,YAAY,CAAC;AAiFpB;;;;;;GAMG;AACH,eAAO,MAAM,sBAAsB,8OACgM,CAAC;AAgBpO;;;;;;;;;;;;;;GAcG;AACH,wBAAgB,WAAW,CAAC,EAAE,EAAE,MAAM,GAAG,MAAM,CAgF9C;AAsBD,8FAA8F;AAC9F,MAAM,WAAW,kBAAkB;IACjC,UAAU,EAAE,UAAU,CAAC;IACvB,gGAAgG;IAChG,EAAE,EAAE,MAAM,CAAC;IACX,mFAAmF;IACnF,MAAM,EAAE,MAAM,CAAC;CAChB;AAED;;;;;;;GAOG;AACH,wBAAgB,eAAe,CAAC,KAAK,EAAE,MAAM,GAAG,kBAAkB,GAAG,SAAS,CAa7E;AAuJD;;;;;GAKG;AACH,wBAAgB,oBAAoB,CAClC,UAAU,EAAE,UAAU,EACtB,MAAM,EAAE,YAAY,GACnB,kBAAkB,CAUpB;AAmeD,cAAM,eAAe;IACnB,OAAO,CAAC,QAAQ,CAAC,OAAO,CAAS;IACjC,OAAO,CAAC,QAAQ,CAAC,MAAM,CAAS;IAChC,OAAO,CAAC,QAAQ,CAAC,MAAM,CAAS;IAEhC,cAKC;IAED,yFAAyF;IACzF,OAAO,CAAC,OAAO;IAgDf,OAAO,CAAC,2BAA2B;IA2EnC,OAAO,CAAC,aAAa;IAqCrB,sEAAsE;IAChE,MAAM,CAAC,MAAM,EAAE,YAAY,EAAE,GAAG,EAAE,OAAO,GAAG,OAAO,CAAC,YAAY,CAAC,CA0FtE;IAED,4BAA4B;IACtB,OAAO,CAAC,MAAM,EAAE,aAAa,EAAE,GAAG,EAAE,OAAO,GAAG,OAAO,CAAC,aAAa,CAAC,CAkDzE;IAED;;;;;;;;;;;;OAYG;IACG,iBAAiB,CACrB,UAAU,EAAE,kBAAkB,EAC9B,GAAG,EAAE,OAAO,GACX,OAAO,CAAC,kBAAkB,CAAC,CAkB7B;IAED,oCAAoC;IAC9B,YAAY,CAAC,MAAM,EAAE,kBAAkB,EAAE,GAAG,EAAE,OAAO,GAAG,OAAO,CAAC,kBAAkB,CAAC,CAsBxF;CACF;AAID,wBAAgB,mBAAmB,IAAI,IAAI,CAE1C;AAED,wBAAgB,kBAAkB,IAAI,eAAe,CAIpD;AAED;;;;;GAKG;AACH,wBAAgB,eAAe,IAAI,MAAM,CAAC,UAAU,EAAE;IAAE,MAAM,EAAE,MAAM,EAAE,CAAC;IAAC,MAAM,EAAE,MAAM,EAAE,CAAA;CAAE,CAAC,CAE5F"}
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@@ -65,6 +65,41 @@ function buildFilterString(filters, ctx) {
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* must not additionally require a letter to be present.
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*/
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const BARE_ROR_PATTERN = /^0[0-9a-hj-km-np-tv-z]{6}\d{2}$/;
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/**
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* A PubMed article URL. OpenAlex does not accept the bare URL as a work ID, but the numeric
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* article path is a PMID, so the URL carries exactly the same meaning as the bare form. The
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* host is anchored on both ends so a look-alike domain can never be read as PubMed.
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*/
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const PUBMED_URL_PATTERN = /^https?:\/\/(?:www\.)?pubmed\.ncbi\.nlm\.nih\.gov\/(\d+)\/?$/i;
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/**
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* A PubMed Central article URL — the current `pmc.ncbi.nlm.nih.gov/articles/…` host and the
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* legacy `ncbi.nlm.nih.gov/pmc/articles/…` path alike. The article segment is a PMCID, so the
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* URL carries exactly the same meaning as the bare form; normalizing it is what makes the two
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* fail identically instead of the URL being forwarded verbatim as a work ID. As with PubMed,
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* the host is anchored on both ends so a look-alike domain can never be read as PubMed Central.
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*/
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const PMC_URL_PATTERN = /^https?:\/\/(?:www\.)?(?:pmc\.ncbi\.nlm\.nih\.gov|ncbi\.nlm\.nih\.gov\/pmc)\/articles\/(PMC\d+)\/?$/i;
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/**
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* Recovery for a PMCID that reached OpenAlex and came back with nothing. OpenAlex indexes no
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* PMCIDs — `has_pmcid:true` matches zero works and a work's `ids` object never carries the key —
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* so a PMCID cannot resolve however well formed it is, and the generic "verify the ID format"
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* advice sends the caller back to retry an identifier that can never work. Shared by the 404
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* mapping here and the `openalex_resolve_name` miss notice so both say the same thing.
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*/
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export const PMCID_NOT_INDEXED_HINT = 'OpenAlex indexes no PMCIDs, so a PMCID resolves nothing however it is written. Convert it to a PMID or DOI — the NCBI ID Converter (https://www.ncbi.nlm.nih.gov/pmc/tools/idconv/) does this — and retry with that identifier.';
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/**
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* Prefix `normalizeId()` emits → the single entity type that identifier scheme addresses.
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* Every external scheme OpenAlex indexes belongs to exactly one entity type, which is what
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* lets an identifier resolve without the caller naming a type.
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*/
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const ENTITY_TYPE_BY_ID_PREFIX = {
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doi: 'works',
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issn: 'sources',
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orcid: 'authors',
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pmcid: 'works',
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pmid: 'works',
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ror: 'institutions',
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};
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/**
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* Detect ID format and return the API path segment.
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* "10.1038/nature12373" → "doi:10.1038/nature12373"
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@@ -74,6 +109,10 @@ const BARE_ROR_PATTERN = /^0[0-9a-hj-km-np-tv-z]{6}\d{2}$/;
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* "https://ror.org/00hx57361" → "ror:https://ror.org/00hx57361"
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* "013meh722" → "ror:013meh722"
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* "PMC1234567" → "pmcid:PMC1234567"
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* "https://pmc.ncbi.nlm.nih.gov/articles/PMC1234567/" → "pmcid:PMC1234567"
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* "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1234567/" → "pmcid:PMC1234567"
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* "https://pubmed.ncbi.nlm.nih.gov/21491125" → "pmid:21491125"
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* "PMID:21491125" → "pmid:21491125"
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* "W2741809807" → "W2741809807"
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*/
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export function normalizeId(id) {
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@@ -118,22 +157,31 @@ export function normalizeId(id) {
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if (/^\d{5,}$/.test(trimmed)) {
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return `pmid:${trimmed}`;
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}
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//
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// PubMed URL → the bare PMID form, matching the pure-numeric branch above. Runs after every
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// shape-matching branch so it can never shadow the bare ROR/PMID disambiguation.
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const pubmedPmid = PUBMED_URL_PATTERN.exec(trimmed)?.[1];
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if (pubmedPmid) {
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return `pmid:${pubmedPmid}`;
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}
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// PubMed Central URL → the bare PMCID form, matching the `PMC\d+` branch above. Placed with
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// the PubMed URL branch, after the shape-matching ones, for the same reason.
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const pmcId = PMC_URL_PATTERN.exec(trimmed)?.[1];
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if (pmcId) {
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return `pmcid:${pmcId}`;
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}
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// Already prefixed — OpenAlex's bare external-ID schemes are case-sensitive, so a caller's
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// `PMID:`/`DOI:` spelling 404s. Fold a recognized scheme to lower case and leave the value
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// exactly as given: DOIs and ORCIDs carry meaningful casing that is the caller's to set.
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const colon = trimmed.indexOf(':');
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if (colon > 0) {
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const scheme = trimmed.slice(0, colon).toLowerCase();
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if (Object.hasOwn(ENTITY_TYPE_BY_ID_PREFIX, scheme)) {
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return `${scheme}${trimmed.slice(colon)}`;
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}
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}
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// OpenAlex ID or an unrecognized prefix — pass through
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return trimmed;
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}
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/**
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* Prefix `normalizeId()` emits → the single entity type that identifier scheme addresses.
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* Every external scheme OpenAlex indexes belongs to exactly one entity type, which is what
|
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* lets an identifier resolve without the caller naming a type.
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*/
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const ENTITY_TYPE_BY_ID_PREFIX = {
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doi: 'works',
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issn: 'sources',
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orcid: 'authors',
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pmcid: 'works',
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pmid: 'works',
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ror: 'institutions',
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};
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/** Native OpenAlex ID letter → entity type. */
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const ENTITY_TYPE_BY_ID_LETTER = {
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A: 'authors',
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@@ -337,6 +385,30 @@ const SELECT_ALIASES_WORKS = {
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authors: 'authorships',
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year: 'publication_year',
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};
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+
/**
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+
* Bibliometric leaves that live under `summary_stats` upstream. `select` projects top-level
|
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+
* fields only — OpenAlex rejects both the bare leaf name and the dotted path — so a caller
|
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* asking for `h_index` gets a 400 listing 21 field names, none of which resemble what they
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+
* asked for. Widening the leaf to its parent makes the first call succeed and returns the
|
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* requested metric inside the object it actually lives in.
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+
*/
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+
const SELECT_ALIASES_SUMMARY_STATS = {
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+
'2yr_mean_citedness': 'summary_stats',
|
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+
h_index: 'summary_stats',
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|
+
i10_index: 'summary_stats',
|
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+
};
|
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+
/**
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+
* Entity types that expose `summary_stats`, verified against `api.openalex.org`. `works`,
|
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402
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+
* `topics`, and `keywords` carry no such field and reject it in `select`, so they get no
|
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403
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+
* alias map — the upstream 400 is the correct answer there.
|
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404
|
+
*/
|
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405
|
+
const SUMMARY_STATS_ENTITY_TYPES = new Set([
|
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|
+
'authors',
|
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|
+
'funders',
|
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+
'institutions',
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+
'publishers',
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+
'sources',
|
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+
]);
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/**
|
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413
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* Works-only `filter` key aliases. Same shape as `SELECT_ALIASES_WORKS` — LLM callers reach
|
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342
414
|
* for `cited_works` (the semantic phrasing) and `year` (universal in REST), neither of which
|
|
@@ -353,12 +425,21 @@ const FILTER_ALIASES_WORKS = {
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425
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* `abstract` is reconstructed from `abstract_inverted_index` in the response — the API
|
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426
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* itself only accepts the latter — so we accept either on input and forward the upstream
|
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355
427
|
* name. Keeps tool ergonomics symmetric with the response shape.
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428
|
+
*
|
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|
+
* Renames are fail-open: an unmapped name passes through and surfaces upstream's 400 with
|
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430
|
+
* its valid-field list. Several leaves can share one parent, so the list is deduped after
|
|
431
|
+
* aliasing rather than before.
|
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356
432
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*/
|
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357
433
|
function translateSelect(entityType, fields) {
|
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358
434
|
const withRequired = Array.from(new Set([...REQUIRED_SEARCH_FIELDS, ...fields]));
|
|
359
|
-
|
|
435
|
+
const aliases = entityType === 'works'
|
|
436
|
+
? SELECT_ALIASES_WORKS
|
|
437
|
+
: SUMMARY_STATS_ENTITY_TYPES.has(entityType)
|
|
438
|
+
? SELECT_ALIASES_SUMMARY_STATS
|
|
439
|
+
: undefined;
|
|
440
|
+
if (!aliases)
|
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441
|
return withRequired;
|
|
361
|
-
return withRequired.map((field) =>
|
|
442
|
+
return Array.from(new Set(withRequired.map((field) => aliases[field] ?? field)));
|
|
362
443
|
}
|
|
363
444
|
/**
|
|
364
445
|
* Resolve the upstream `select` projection for an entity request — applied identically to
|
|
@@ -617,6 +698,14 @@ function resolveThrowReason(code, mappedReason, rawMessage) {
|
|
|
617
698
|
return classifyRateLimitReason(rawMessage);
|
|
618
699
|
return mappedReason;
|
|
619
700
|
}
|
|
701
|
+
/**
|
|
702
|
+
* Is this request path a by-ID lookup for a `pmcid:`-scheme identifier? `normalizeId()` folds a
|
|
703
|
+
* recognized scheme to lower case, so `pmcid:` is the exact prefix every PMCID lookup arrives
|
|
704
|
+
* with, bare form and PubMed Central URL alike.
|
|
705
|
+
*/
|
|
706
|
+
function isPmcidLookup(path) {
|
|
707
|
+
return path.split('/')[2]?.startsWith('pmcid:') ?? false;
|
|
708
|
+
}
|
|
620
709
|
/**
|
|
621
710
|
* Domain-language replacement for the framework's fetch-plumbing message on the failures
|
|
622
711
|
* that never carry an HTTP status. `fetch GET <url> timed out.` describes this client, not
|
|
@@ -781,9 +870,10 @@ class OpenAlexService {
|
|
|
781
870
|
const code = statusCode === undefined ? error.code : httpStatusToErrorCode(statusCode);
|
|
782
871
|
const normalized = code === undefined ? undefined : NORMALIZED_THROW_BY_CODE[code];
|
|
783
872
|
if (code === undefined || normalized === undefined) {
|
|
784
|
-
// No mapped reason for this code (a caller-side abort
|
|
785
|
-
// fetch errors format the message as `Fetch failed
|
|
786
|
-
// carries the `api_key` credential and the `mailto`
|
|
873
|
+
// No mapped reason for this code (a caller-side abort — an upstream 500 now maps to
|
|
874
|
+
// ServiceUnavailable above). Framework fetch errors format the message as `Fetch failed
|
|
875
|
+
// for <URL>. Status: …` — the URL carries the `api_key` credential and the `mailto`
|
|
876
|
+
// identifier. Redact before bubbling.
|
|
787
877
|
throw new McpError(error.code, redactUrlsInMessage(error.message), error.data, {
|
|
788
878
|
cause: error,
|
|
789
879
|
});
|
|
@@ -816,6 +906,12 @@ class OpenAlexService {
|
|
|
816
906
|
path,
|
|
817
907
|
reason,
|
|
818
908
|
...ctx.recoveryFor(reason),
|
|
909
|
+
// A PMCID lookup that 404s is not a miss to verify and retry — OpenAlex indexes no
|
|
910
|
+
// PMCIDs, so every tool's generic "verify the ID" recovery hands back the one instruction
|
|
911
|
+
// that cannot help. Substituted here, where all three ID-accepting tools inherit it.
|
|
912
|
+
...(code === JsonRpcErrorCode.NotFound && isPmcidLookup(path)
|
|
913
|
+
? { recovery: { hint: PMCID_NOT_INDEXED_HINT } }
|
|
914
|
+
: {}),
|
|
819
915
|
// `RateLimited` sits in the framework's transient set, so `withRetry` would spend the
|
|
820
916
|
// full attempt budget against a budget wall that stays up until the daily reset. This
|
|
821
917
|
// flag is the framework's per-error opt-out from that loop; the contract's own
|
|
@@ -1 +1 @@
|
|
|
1
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-
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1
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|
package/package.json
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "@cyanheads/openalex-mcp-server",
|
|
3
|
-
"version": "0.7.
|
|
3
|
+
"version": "0.7.12",
|
|
4
4
|
"description": "Access the OpenAlex academic research catalog - 270M+ publications through MCP. STDIO & Streamable HTTP.",
|
|
5
5
|
"mcpName": "io.github.cyanheads/openalex-mcp-server",
|
|
6
6
|
"type": "module",
|
|
@@ -88,18 +88,18 @@
|
|
|
88
88
|
},
|
|
89
89
|
"trustedDependencies": ["@socketsecurity/bun-security-scanner"],
|
|
90
90
|
"dependencies": {
|
|
91
|
-
"@cyanheads/mcp-ts-core": "^0.12.
|
|
91
|
+
"@cyanheads/mcp-ts-core": "^0.12.7",
|
|
92
92
|
"pino-pretty": "^13.1.3",
|
|
93
93
|
"zod": "^4.5.4"
|
|
94
94
|
},
|
|
95
95
|
"devDependencies": {
|
|
96
|
-
"@biomejs/biome": "^2.5.
|
|
96
|
+
"@biomejs/biome": "^2.5.12",
|
|
97
97
|
"@socketsecurity/bun-security-scanner": "^1.1.2",
|
|
98
|
-
"@types/node": "^26.4.
|
|
98
|
+
"@types/node": "^26.4.1",
|
|
99
99
|
"depcheck": "^1.4.7",
|
|
100
|
-
"ignore": "^7.0.
|
|
101
|
-
"tsc-alias": "^1.9.
|
|
100
|
+
"ignore": "^7.0.8",
|
|
101
|
+
"tsc-alias": "^1.9.4",
|
|
102
102
|
"typescript": "^7.0.2",
|
|
103
|
-
"vitest": "^
|
|
103
|
+
"vitest": "^5.0.0"
|
|
104
104
|
}
|
|
105
105
|
}
|
package/server.json
CHANGED
|
@@ -6,7 +6,7 @@
|
|
|
6
6
|
"url": "https://github.com/cyanheads/openalex-mcp-server",
|
|
7
7
|
"source": "github"
|
|
8
8
|
},
|
|
9
|
-
"version": "0.7.
|
|
9
|
+
"version": "0.7.12",
|
|
10
10
|
"remotes": [
|
|
11
11
|
{
|
|
12
12
|
"type": "streamable-http",
|
|
@@ -19,7 +19,7 @@
|
|
|
19
19
|
"registryBaseUrl": "https://registry.npmjs.org",
|
|
20
20
|
"identifier": "@cyanheads/openalex-mcp-server",
|
|
21
21
|
"runtimeHint": "node",
|
|
22
|
-
"version": "0.7.
|
|
22
|
+
"version": "0.7.12",
|
|
23
23
|
"packageArguments": [
|
|
24
24
|
{
|
|
25
25
|
"type": "positional",
|
|
@@ -67,7 +67,7 @@
|
|
|
67
67
|
"registryBaseUrl": "https://registry.npmjs.org",
|
|
68
68
|
"identifier": "@cyanheads/openalex-mcp-server",
|
|
69
69
|
"runtimeHint": "node",
|
|
70
|
-
"version": "0.7.
|
|
70
|
+
"version": "0.7.12",
|
|
71
71
|
"packageArguments": [
|
|
72
72
|
{
|
|
73
73
|
"type": "positional",
|