@cyanheads/openalex-mcp-server 0.6.13 → 0.6.14

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (11) hide show
  1. package/CLAUDE.md +1 -1
  2. package/README.md +2 -2
  3. package/dist/mcp-server/prompts/definitions/literature-review.prompt.d.ts +1 -1
  4. package/dist/mcp-server/prompts/definitions/literature-review.prompt.d.ts.map +1 -1
  5. package/dist/mcp-server/prompts/definitions/literature-review.prompt.js +18 -15
  6. package/dist/mcp-server/prompts/definitions/literature-review.prompt.js.map +1 -1
  7. package/dist/services/openalex/openalex-service.d.ts.map +1 -1
  8. package/dist/services/openalex/openalex-service.js +25 -2
  9. package/dist/services/openalex/openalex-service.js.map +1 -1
  10. package/package.json +2 -2
  11. package/server.json +3 -3
package/CLAUDE.md CHANGED
@@ -1,7 +1,7 @@
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  # Agent Protocol
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3
3
  **Server:** openalex-mcp-server
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- **Version:** 0.6.13
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+ **Version:** 0.6.14
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  **Framework:** [@cyanheads/mcp-ts-core](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) `^0.9.6`
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  **Engines:** Bun ≥1.3.0, Node ≥24.0.0
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package/README.md CHANGED
@@ -7,13 +7,13 @@
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8
  <div align="center">
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9
 
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- [![Version](https://img.shields.io/badge/Version-0.6.13-blue.svg?style=flat-square)](./CHANGELOG.md) [![License](https://img.shields.io/badge/License-Apache%202.0-orange.svg?style=flat-square)](./LICENSE) [![Docker](https://img.shields.io/badge/Docker-ghcr.io-2496ED?style=flat-square&logo=docker&logoColor=white)](https://github.com/users/cyanheads/packages/container/package/openalex-mcp-server) [![MCP SDK](https://img.shields.io/badge/MCP%20SDK-^1.29.0-green.svg?style=flat-square)](https://modelcontextprotocol.io/) [![npm](https://img.shields.io/npm/v/@cyanheads/openalex-mcp-server?style=flat-square&logo=npm&logoColor=white)](https://www.npmjs.com/package/@cyanheads/openalex-mcp-server) [![TypeScript](https://img.shields.io/badge/TypeScript-^6.0.3-3178C6.svg?style=flat-square)](https://www.typescriptlang.org/) [![Bun](https://img.shields.io/badge/Bun-v1.3.0-blueviolet.svg?style=flat-square)](https://bun.sh/)
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+ [![Version](https://img.shields.io/badge/Version-0.6.14-blue.svg?style=flat-square)](./CHANGELOG.md) [![License](https://img.shields.io/badge/License-Apache%202.0-orange.svg?style=flat-square)](./LICENSE) [![Docker](https://img.shields.io/badge/Docker-ghcr.io-2496ED?style=flat-square&logo=docker&logoColor=white)](https://github.com/users/cyanheads/packages/container/package/openalex-mcp-server) [![MCP SDK](https://img.shields.io/badge/MCP%20SDK-^1.29.0-green.svg?style=flat-square)](https://modelcontextprotocol.io/) [![npm](https://img.shields.io/npm/v/@cyanheads/openalex-mcp-server?style=flat-square&logo=npm&logoColor=white)](https://www.npmjs.com/package/@cyanheads/openalex-mcp-server) [![TypeScript](https://img.shields.io/badge/TypeScript-^6.0.3-3178C6.svg?style=flat-square)](https://www.typescriptlang.org/) [![Bun](https://img.shields.io/badge/Bun-v1.3.0-blueviolet.svg?style=flat-square)](https://bun.sh/)
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  </div>
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  <div align="center">
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- [![Install in Claude Desktop](https://img.shields.io/badge/Install_in-Claude_Desktop-D97757?style=for-the-badge&logo=anthropic&logoColor=white)](https://github.com/cyanheads/openalex-mcp-server/releases/latest/download/openalex-mcp-server.mcpb) [![Install in Cursor](https://cursor.com/deeplink/mcp-install-dark.svg)](https://cursor.com/en/install-mcp?name=openalex-mcp-server&config=eyJtY3BTZXJ2ZXJzIjp7Im9wZW5hbGV4LW1jcC1zZXJ2ZXIiOnsiY29tbWFuZCI6Im5weCIsImFyZ3MiOlsiLXkiLCJAY3lhbmhlYWRzL29wZW5hbGV4LW1jcC1zZXJ2ZXJAbGF0ZXN0Il0sImVudiI6eyJNQ1BfVFJBTlNQT1JUX1RZUEUiOiJzdGRpbyIsIk1DUF9MT0dfTEVWRUwiOiJpbmZvIn19fX0=) [![Install in VS Code](https://img.shields.io/badge/VS_Code-Install_Server-0098FF?style=for-the-badge&logo=visualstudiocode&logoColor=white)](https://vscode.dev/redirect?url=vscode:mcp/install?%7B%22name%22%3A%22openalex-mcp-server%22%2C%22command%22%3A%22npx%22%2C%22args%22%3A%5B%22-y%22%2C%22%40cyanheads%2Fopenalex-mcp-server%40latest%22%5D%2C%22env%22%3A%7B%22MCP_TRANSPORT_TYPE%22%3A%22stdio%22%2C%22MCP_LOG_LEVEL%22%3A%22info%22%7D%7D)
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+ [![Install in Claude Desktop](https://img.shields.io/badge/Install_in-Claude_Desktop-D97757?style=for-the-badge&logo=anthropic&logoColor=white)](https://github.com/cyanheads/openalex-mcp-server/releases/latest/download/openalex-mcp-server.mcpb) [![Install in Cursor](https://cursor.com/deeplink/mcp-install-dark.svg)](https://cursor.com/en/install-mcp?name=openalex-mcp-server&config=eyJjb21tYW5kIjoibnB4IiwiYXJncyI6WyIteSIsIkBjeWFuaGVhZHMvb3BlbmFsZXgtbWNwLXNlcnZlciJdfQ==) [![Install in VS Code](https://img.shields.io/badge/VS_Code-Install_Server-0098FF?style=for-the-badge&logo=visualstudiocode&logoColor=white)](https://vscode.dev/redirect?url=vscode:mcp/install?%7B%22name%22%3A%22openalex-mcp-server%22%2C%22command%22%3A%22npx%22%2C%22args%22%3A%5B%22-y%22%2C%22%40cyanheads/openalex-mcp-server%22%5D%7D)
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  [![Framework](https://img.shields.io/badge/Built%20on-@cyanheads/mcp--ts--core-67E8F9?style=flat-square)](https://www.npmjs.com/package/@cyanheads/mcp-ts-core)
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package/dist/mcp-server/prompts/definitions/literature-review.prompt.d.ts CHANGED
@@ -5,7 +5,7 @@
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  import { z } from '@cyanheads/mcp-ts-core';
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  export declare const literatureReviewPrompt: import("@cyanheads/mcp-ts-core").PromptDefinition<z.ZodObject<{
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  topic: z.ZodString;
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- scope: z.ZodDefault<z.ZodEnum<{
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+ scope: z.ZodOptional<z.ZodEnum<{
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  narrow: "narrow";
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  broad: "broad";
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  }>>;
package/dist/mcp-server/prompts/definitions/literature-review.prompt.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"literature-review.prompt.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/prompts/definitions/literature-review.prompt.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAU,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAEnD,eAAO,MAAM,sBAAsB;;;;;;kBAuDjC,CAAC"}
1
+ {"version":3,"file":"literature-review.prompt.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/prompts/definitions/literature-review.prompt.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAU,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAEnD,eAAO,MAAM,sBAAsB;;;;;;kBA4DjC,CAAC"}
package/dist/mcp-server/prompts/definitions/literature-review.prompt.js CHANGED
@@ -12,28 +12,30 @@ export const literatureReviewPrompt = prompt('openalex_literature_review', {
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  .describe('Research topic or question to review (e.g., "CRISPR off-target effects in human cell lines").'),
13
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  scope: z
14
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  .enum(['narrow', 'broad'])
15
- .default('narrow')
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- .describe('"narrow": focused on specific question. "broad": survey of the field.'),
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+ .optional()
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+ .describe('"narrow": focused on specific question. "broad": survey of the field. Defaults to "narrow" if omitted.'),
17
17
  }),
18
- generate: (args) => [
19
- {
20
- role: 'user',
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- content: {
22
- type: 'text',
23
- text: `Conduct a systematic literature review on: "${args.topic}"
18
+ generate: (args) => {
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+ const scope = args.scope ?? 'narrow';
20
+ return [
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+ {
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+ role: 'user',
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+ content: {
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+ type: 'text',
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+ text: `Conduct a systematic literature review on: "${args.topic}"
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26
 
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- Scope: ${args.scope}
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+ Scope: ${scope}
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28
 
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  Follow this workflow using the OpenAlex tools:
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  1. **Resolve entities** — Use openalex_resolve_name to identify key authors, institutions, or topics related to "${args.topic}". Collect their OpenAlex IDs.
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- 2. **Search literature** — Use openalex_search_entities to find relevant works.${args.scope === 'narrow'
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- ? `
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+ 2. **Search literature** — Use openalex_search_entities to find relevant works.${scope === 'narrow'
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+ ? `
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  - Use exact search mode with specific phrases
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  - Filter tightly by resolved topic IDs
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  - Focus on a single topic cluster`
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- : `
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+ : `
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  - Try keyword search for the topic
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  - Use semantic search for conceptually related work across subfields
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  - Search with multiple related topic IDs to capture adjacent areas`}
@@ -41,7 +43,7 @@ Follow this workflow using the OpenAlex tools:
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43
 
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  3. **Identify key papers** — Sort by cited_by_count to find landmark works. Use openalex_search_entities with id to get full details on the most important ones.
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45
 
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- 4. **Trace citations** — For key papers, search with the cited_by filter to find subsequent work, and the cites filter to find foundational work.
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+ 4. **Trace citations** — For each key paper, use openalex_get_citation_graph with direction "cites" to find subsequent work that cites it, and direction "cited_by" to find foundational work it references.
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  5. **Analyze the landscape** — Use openalex_analyze_trends to understand:
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  - Publication volume over time (group_by: publication_year)
@@ -49,8 +51,9 @@ Follow this workflow using the OpenAlex tools:
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51
  - Open access availability (group_by: oa_status)
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52
 
51
53
  6. **Synthesize** — Summarize findings: key themes, seminal papers, active research fronts, gaps in the literature, and methodological trends.`,
54
+ },
52
55
  },
53
- },
54
- ],
56
+ ];
57
+ },
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  });
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  //# sourceMappingURL=literature-review.prompt.js.map
package/dist/mcp-server/prompts/definitions/literature-review.prompt.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"literature-review.prompt.js","sourceRoot":"","sources":["../../../../src/mcp-server/prompts/definitions/literature-review.prompt.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAEnD,MAAM,CAAC,MAAM,sBAAsB,GAAG,MAAM,CAAC,4BAA4B,EAAE;IACzE,WAAW,EACT,wHAAwH;IAC1H,SAAS,EACP,2HAA2H;IAC7H,IAAI,EAAE,CAAC,CAAC,MAAM,CAAC;QACb,KAAK,EAAE,CAAC;aACL,MAAM,EAAE;aACR,QAAQ,CACP,+FAA+F,CAChG;QACH,KAAK,EAAE,CAAC;aACL,IAAI,CAAC,CAAC,QAAQ,EAAE,OAAO,CAAC,CAAC;aACzB,OAAO,CAAC,QAAQ,CAAC;aACjB,QAAQ,CAAC,uEAAuE,CAAC;KACrF,CAAC;IACF,QAAQ,EAAE,CAAC,IAAI,EAAE,EAAE,CAAC;QAClB;YACE,IAAI,EAAE,MAAM;YACZ,OAAO,EAAE;gBACP,IAAI,EAAE,MAAM;gBACZ,IAAI,EAAE,+CAA+C,IAAI,CAAC,KAAK;;SAE9D,IAAI,CAAC,KAAK;;;;mHAIgG,IAAI,CAAC,KAAK;;iFAGnH,IAAI,CAAC,KAAK,KAAK,QAAQ;oBACrB,CAAC,CAAC;;;qCAGuB;oBACzB,CAAC,CAAC;;;sEAIN;;;;;;;;;;;;+IAYuI;aACxI;SACF;KACF;CACF,CAAC,CAAC"}
1
+ {"version":3,"file":"literature-review.prompt.js","sourceRoot":"","sources":["../../../../src/mcp-server/prompts/definitions/literature-review.prompt.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAEnD,MAAM,CAAC,MAAM,sBAAsB,GAAG,MAAM,CAAC,4BAA4B,EAAE;IACzE,WAAW,EACT,wHAAwH;IAC1H,SAAS,EACP,2HAA2H;IAC7H,IAAI,EAAE,CAAC,CAAC,MAAM,CAAC;QACb,KAAK,EAAE,CAAC;aACL,MAAM,EAAE;aACR,QAAQ,CACP,+FAA+F,CAChG;QACH,KAAK,EAAE,CAAC;aACL,IAAI,CAAC,CAAC,QAAQ,EAAE,OAAO,CAAC,CAAC;aACzB,QAAQ,EAAE;aACV,QAAQ,CACP,wGAAwG,CACzG;KACJ,CAAC;IACF,QAAQ,EAAE,CAAC,IAAI,EAAE,EAAE;QACjB,MAAM,KAAK,GAAG,IAAI,CAAC,KAAK,IAAI,QAAQ,CAAC;QACrC,OAAO;YACL;gBACE,IAAI,EAAE,MAAM;gBACZ,OAAO,EAAE;oBACP,IAAI,EAAE,MAAM;oBACZ,IAAI,EAAE,+CAA+C,IAAI,CAAC,KAAK;;SAEhE,KAAK;;;;mHAIqG,IAAI,CAAC,KAAK;;iFAGjH,KAAK,KAAK,QAAQ;wBAChB,CAAC,CAAC;;;qCAGqB;wBACvB,CAAC,CAAC;;;sEAIN;;;;;;;;;;;;+IAYqI;iBACtI;aACF;SACF,CAAC;IACJ,CAAC;CACF,CAAC,CAAC"}
package/dist/services/openalex/openalex-service.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"openalex-service.d.ts","sourceRoot":"","sources":["../../../src/services/openalex/openalex-service.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,wBAAwB,CAAC;AAoBtD,OAAO,EACL,KAAK,aAAa,EAClB,KAAK,aAAa,EAClB,KAAK,kBAAkB,EACvB,KAAK,kBAAkB,EAIvB,KAAK,YAAY,EACjB,KAAK,YAAY,EAClB,MAAM,YAAY,CAAC;AAcpB;;;;;;;;GAQG;AACH,wBAAgB,WAAW,CAAC,EAAE,EAAE,MAAM,GAAG,MAAM,CA6C9C;AA+UD,cAAM,eAAe;IACnB,OAAO,CAAC,QAAQ,CAAC,OAAO,CAAS;IACjC,OAAO,CAAC,QAAQ,CAAC,MAAM,CAAS;;IAQhC,yFAAyF;IACzF,OAAO,CAAC,OAAO;IAoCf,OAAO,CAAC,2BAA2B;IA4CnC,OAAO,CAAC,aAAa;IAqCrB,sEAAsE;IAChE,MAAM,CAAC,MAAM,EAAE,YAAY,EAAE,GAAG,EAAE,OAAO,GAAG,OAAO,CAAC,YAAY,CAAC;IA8FvE,4BAA4B;IACtB,OAAO,CAAC,MAAM,EAAE,aAAa,EAAE,GAAG,EAAE,OAAO,GAAG,OAAO,CAAC,aAAa,CAAC;IAoC1E,oCAAoC;IAC9B,YAAY,CAAC,MAAM,EAAE,kBAAkB,EAAE,GAAG,EAAE,OAAO,GAAG,OAAO,CAAC,kBAAkB,CAAC;CAuB1F;AAID,wBAAgB,mBAAmB,IAAI,IAAI,CAE1C;AAED,wBAAgB,kBAAkB,IAAI,eAAe,CAIpD"}
1
+ {"version":3,"file":"openalex-service.d.ts","sourceRoot":"","sources":["../../../src/services/openalex/openalex-service.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,wBAAwB,CAAC;AAoBtD,OAAO,EACL,KAAK,aAAa,EAClB,KAAK,aAAa,EAClB,KAAK,kBAAkB,EACvB,KAAK,kBAAkB,EAIvB,KAAK,YAAY,EACjB,KAAK,YAAY,EAClB,MAAM,YAAY,CAAC;AA+BpB;;;;;;;;GAQG;AACH,wBAAgB,WAAW,CAAC,EAAE,EAAE,MAAM,GAAG,MAAM,CA6C9C;AA+UD,cAAM,eAAe;IACnB,OAAO,CAAC,QAAQ,CAAC,OAAO,CAAS;IACjC,OAAO,CAAC,QAAQ,CAAC,MAAM,CAAS;;IAQhC,yFAAyF;IACzF,OAAO,CAAC,OAAO;IAoCf,OAAO,CAAC,2BAA2B;IA4CnC,OAAO,CAAC,aAAa;IAqCrB,sEAAsE;IAChE,MAAM,CAAC,MAAM,EAAE,YAAY,EAAE,GAAG,EAAE,OAAO,GAAG,OAAO,CAAC,YAAY,CAAC;IA8FvE,4BAA4B;IACtB,OAAO,CAAC,MAAM,EAAE,aAAa,EAAE,GAAG,EAAE,OAAO,GAAG,OAAO,CAAC,aAAa,CAAC;IA2C1E,oCAAoC;IAC9B,YAAY,CAAC,MAAM,EAAE,kBAAkB,EAAE,GAAG,EAAE,OAAO,GAAG,OAAO,CAAC,kBAAkB,CAAC;CAuB1F;AAID,wBAAgB,mBAAmB,IAAI,IAAI,CAE1C;AAED,wBAAgB,kBAAkB,IAAI,eAAe,CAIpD"}
package/dist/services/openalex/openalex-service.js CHANGED
@@ -7,6 +7,22 @@ import { fetchWithTimeout, httpStatusToErrorCode, withRetry } from '@cyanheads/m
7
7
  import { getServerConfig } from '../../config/server-config.js';
8
8
  import { DEFAULT_SELECT, ENTITY_TYPES, } from './types.js';
9
9
  import { redactUrlsInMessage } from './url-redaction.js';
10
+ /**
11
+ * OpenAlex group_by fields that produce only true/false groups and reject
12
+ * cursor pagination (HTTP 400). These fields never have more than two groups,
13
+ * so cursor-based paging is unnecessary and the upstream rejects `cursor=*`.
14
+ */
15
+ const BOOLEAN_GROUP_BY_FIELDS = new Set([
16
+ 'is_retracted',
17
+ 'is_paratext',
18
+ 'is_oa',
19
+ 'has_orcid',
20
+ 'has_doi',
21
+ 'has_raw_affiliation_string',
22
+ 'open_access.is_oa',
23
+ 'apc_paid',
24
+ 'has_fulltext',
25
+ ]);
10
26
  /**
11
27
  * Build an OpenAlex filter string from a key-value record.
12
28
  * Input: { "cited_by_count": ">100", "is_oa": "true" }
@@ -549,11 +565,18 @@ class OpenAlexService {
549
565
  if (params.perPage !== undefined) {
550
566
  queryParams.per_page = String(params.perPage);
551
567
  }
552
- // Only send cursor when explicitly provided — boolean group_by fields
553
- // (is_retracted, has_orcid, etc.) reject cursor pagination entirely.
568
+ // Boolean group_by fields (is_retracted, has_orcid, etc.) only produce
569
+ // two groups (true/false) and reject cursor pagination with a 400.
570
+ // All other fields require cursor=* on the first request to enable
571
+ // cursor-based pagination — without it, next_cursor is never returned.
572
+ const baseField = params.groupBy.replace(/:include_unknown$/, '');
573
+ const isBooleanGroupBy = BOOLEAN_GROUP_BY_FIELDS.has(baseField);
554
574
  if (params.cursor) {
555
575
  queryParams.cursor = params.cursor;
556
576
  }
577
+ else if (!isBooleanGroupBy) {
578
+ queryParams.cursor = '*';
579
+ }
557
580
  const data = (await this.request(`/${params.entityType}`, queryParams, ctx));
558
581
  return {
559
582
  meta: {
package/dist/services/openalex/openalex-service.js.map CHANGED
@@ -1 +1 @@
1
- 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package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@cyanheads/openalex-mcp-server",
3
- "version": "0.6.13",
3
+ "version": "0.6.14",
4
4
  "description": "Access the OpenAlex academic research catalog - 270M+ publications through MCP. STDIO & Streamable HTTP.",
5
5
  "mcpName": "io.github.cyanheads/openalex-mcp-server",
6
6
  "type": "module",
@@ -20,7 +20,7 @@
20
20
  "lint:mcp": "bun scripts/lint-mcp.ts",
21
21
  "lint:packaging": "bun scripts/lint-packaging.ts",
22
22
  "list-skills": "bun scripts/list-skills.ts",
23
- "bundle": "bun run build && npx -y @anthropic-ai/mcpb pack . dist/@cyanheads/openalex-mcp-server.mcpb",
23
+ "bundle": "bun run build && npx -y @anthropic-ai/mcpb pack . dist/openalex-mcp-server.mcpb",
24
24
  "audit:refresh": "rm -f bun.lock && bun install && bun audit",
25
25
  "changelog:build": "bun scripts/build-changelog.ts",
26
26
  "changelog:check": "bun scripts/build-changelog.ts --check",
package/server.json CHANGED
@@ -6,7 +6,7 @@
6
6
  "url": "https://github.com/cyanheads/openalex-mcp-server",
7
7
  "source": "github"
8
8
  },
9
- "version": "0.6.13",
9
+ "version": "0.6.14",
10
10
  "remotes": [
11
11
  {
12
12
  "type": "streamable-http",
@@ -19,7 +19,7 @@
19
19
  "registryBaseUrl": "https://registry.npmjs.org",
20
20
  "identifier": "@cyanheads/openalex-mcp-server",
21
21
  "runtimeHint": "node",
22
- "version": "0.6.13",
22
+ "version": "0.6.14",
23
23
  "packageArguments": [
24
24
  {
25
25
  "type": "positional",
@@ -61,7 +61,7 @@
61
61
  "registryBaseUrl": "https://registry.npmjs.org",
62
62
  "identifier": "@cyanheads/openalex-mcp-server",
63
63
  "runtimeHint": "node",
64
- "version": "0.6.13",
64
+ "version": "0.6.14",
65
65
  "packageArguments": [
66
66
  {
67
67
  "type": "positional",