@cyanheads/openalex-mcp-server 0.6.12 → 0.6.14

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Files changed (15) hide show
  1. package/CLAUDE.md +43 -14
  2. package/README.md +13 -4
  3. package/dist/config/server-config.d.ts +1 -1
  4. package/dist/config/server-config.d.ts.map +1 -1
  5. package/dist/config/server-config.js +4 -1
  6. package/dist/config/server-config.js.map +1 -1
  7. package/dist/mcp-server/prompts/definitions/literature-review.prompt.d.ts +1 -1
  8. package/dist/mcp-server/prompts/definitions/literature-review.prompt.d.ts.map +1 -1
  9. package/dist/mcp-server/prompts/definitions/literature-review.prompt.js +18 -15
  10. package/dist/mcp-server/prompts/definitions/literature-review.prompt.js.map +1 -1
  11. package/dist/services/openalex/openalex-service.d.ts.map +1 -1
  12. package/dist/services/openalex/openalex-service.js +27 -3
  13. package/dist/services/openalex/openalex-service.js.map +1 -1
  14. package/package.json +8 -3
  15. package/server.json +8 -8
package/CLAUDE.md CHANGED
@@ -1,8 +1,9 @@
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  # Agent Protocol
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  **Server:** openalex-mcp-server
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- **Version:** 0.6.10
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- **Framework:** [@cyanheads/mcp-ts-core](https://www.npmjs.com/package/@cyanheads/mcp-ts-core)
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+ **Version:** 0.6.14
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+ **Framework:** [@cyanheads/mcp-ts-core](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) `^0.9.6`
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+ **Engines:** Bun ≥1.3.0, Node ≥24.0.0
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  > **Read the framework docs first:** `node_modules/@cyanheads/mcp-ts-core/CLAUDE.md` contains the full API reference — builders, Context, error codes, exports, patterns. This file covers server-specific conventions only.
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@@ -10,7 +11,7 @@
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  ## Domain
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- [OpenAlex](https://openalex.org) is a fully open catalog of the global research system — 270M+ works, 90M+ authors, 100K+ sources. CC0 data, free API key required.
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+ [OpenAlex](https://openalex.org) is a fully open catalog of the global research system — 270M+ works, 90M+ authors, 100K+ sources. CC0 data, no API key required (email address optional for polite pool access).
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  **Entity types:** works, authors, sources, institutions, topics, keywords, publishers, funders. All share a uniform API (list/filter, search, get-by-ID, group-by, autocomplete).
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@@ -34,21 +35,27 @@ No resources — entity lookups need `select` for payload control, which fits to
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  | Env Var | Required | Description |
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  |:--------|:---------|:------------|
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- | `OPENALEX_API_KEY` | Yes | API key from openalex.org |
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+ | `OPENALEX_API_KEY` | No | Email for the OpenAlex polite pool (10x faster rate limits); omit for anonymous access |
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  | `OPENALEX_BASE_URL` | No | Default: `https://api.openalex.org` |
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  ---
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  ## What's Next?
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- When the user asks what to do next, what's left, or needs direction, suggest relevant options based on the current project state:
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+ When the user asks what's next or needs direction, suggest options based on the current project state. Common next steps:
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- 1. **Add tests** — scaffold tests for existing definitions using the `add-test` skill
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- 2. **Field-test definitions** — exercise tools/resources/prompts with real inputs using the `field-test` skill
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- 3. **Run `devcheck`** — lint, format, typecheck, and security audit
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- 4. **Run the `security-pass` skill** — audit handlers for MCP-specific security gaps: output injection, scope blast radius, input sinks, tenant isolation
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- 5. **Run the `polish-docs-meta` skill** — finalize README, CHANGELOG, metadata, and agent protocol for shipping
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- 6. **Run the `maintenance` skill** — sync skills and dependencies after framework updates
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+ 1. **Re-run the `setup` skill** — ensures CLAUDE.md, skills, structure, and metadata are populated and up to date with the current codebase
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+ 2. **Run the `design-mcp-server` skill** — if the tool/resource surface hasn't been mapped yet, work through domain design
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+ 3. **Add tools/resources/prompts** — scaffold new definitions using the `add-tool`, `add-app-tool`, `add-resource`, `add-prompt` skills
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+ 4. **Add services** — scaffold domain service integrations using the `add-service` skill
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+ 5. **Add tests** — scaffold tests for existing definitions using the `add-test` skill
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+ 6. **Field-test definitions** — exercise tools/resources/prompts with real inputs using the `field-test` skill, get a report of issues and pain points
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+ 7. **Run `devcheck`** — lint, format, typecheck, and security audit
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+ 8. **Run the `security-pass` skill** — audit handlers for MCP-specific security gaps: output injection, scope blast radius, input sinks, tenant isolation
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+ 9. **Run the `polish-docs-meta` skill** — finalize README, CHANGELOG, metadata, and agent protocol for shipping
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+ 10. **Run the `maintenance` skill** — investigate changelogs, adopt upstream changes, and sync skills after `bun update --latest`
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+
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+ Tailor suggestions to what's actually missing or stale — don't recite the full list every time.
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  ---
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@@ -135,8 +142,11 @@ Handlers receive a unified `ctx` object. Key properties:
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  | Property | Description |
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  |:---------|:------------|
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  | `ctx.log` | Request-scoped logger — `.debug()`, `.info()`, `.notice()`, `.warning()`, `.error()`. Auto-correlates requestId, traceId, tenantId. |
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+ | `ctx.state` | Tenant-scoped KV — `.get(key)`, `.set(key, value, { ttl? })`, `.delete(key)`, `.list(prefix, { cursor, limit })`. Accepts any serializable value. |
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+ | `ctx.elicit` | Ask user for structured input. **Check for presence first:** `if (ctx.elicit) { ... }` |
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+ | `ctx.sample` | Request LLM completion from the client. **Check for presence first:** `if (ctx.sample) { ... }` |
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  | `ctx.signal` | `AbortSignal` for cancellation. Passed to `fetch()` in the OpenAlex service. |
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- | `ctx.state` | Tenant-scoped KV — `.get(key)`, `.set(key, value, { ttl? })`, `.delete(key)`, `.list(prefix, { cursor, limit })`. Not currently used but available. |
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+ | `ctx.progress` | Task progress (present when `task: true`) — `.setTotal(n)`, `.increment()`, `.update(message)`. |
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  | `ctx.fail` | Typed throw keyed by a declared `errors[]` contract — `ctx.fail(reason, msg?, data?)`. Auto-populates `data.reason` and resolves `code` from the contract. |
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  | `ctx.recoveryFor` | Opt-in resolver returning `{ recovery: { hint } }` for a declared reason. Spread into `data` at throw site to surface contract recovery on the wire. |
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  | `ctx.requestId` | Unique request ID. |
@@ -264,13 +274,32 @@ When you complete a skill's checklist, check the boxes and add a completion time
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  | `bun run build` | Compile TypeScript |
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  | `bun run rebuild` | Clean + build |
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  | `bun run clean` | Remove build artifacts |
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- | `bun run devcheck` | Lint + format + typecheck + security |
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+ | `bun run devcheck` | Lint + format + typecheck + security + changelog sync |
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+ | `bun run audit:refresh` | Delete `bun.lock`, reinstall, re-audit. Use when `devcheck` flags a transitive advisory — stale lockfile can mask already-patched deps. If advisory survives, it's real. |
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  | `bun run tree` | Generate directory structure doc |
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  | `bun run format` | Auto-fix formatting |
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  | `bun run lint:mcp` | Validate MCP tool/prompt definitions |
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+ | `bun run list-skills` | List available skills |
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  | `bun run test` | Run tests |
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  | `bun run start:stdio` | Production mode (stdio, after `rebuild`) |
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  | `bun run start:http` | Production mode (HTTP, after `rebuild`) |
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+ | `bun run changelog:build` | Regenerate `CHANGELOG.md` from `changelog/*.md` |
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+ | `bun run changelog:check` | Verify `CHANGELOG.md` is in sync (used by devcheck) |
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+ | `bun run bundle` | Build and pack as `.mcpb` for one-click Claude Desktop install |
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+
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+ ---
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+
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+ ## Bundling
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+
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+ `bun run bundle` produces a `.mcpb` extension bundle for one-click install in Claude Desktop. MCPB is stdio-only — HTTP deployments are unaffected. Consumers who don't need it can delete `manifest.json` and `.mcpbignore`; `lint:packaging` skips cleanly.
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+
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+ **Adding an env var requires both files:** `server.json` (registry discovery, `environmentVariables[]`) and `manifest.json` (bundle install UX, `mcp_config.env` + `user_config`). `lint:packaging` (run by `devcheck`) verifies the env var names match.
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+
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+ ---
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+
300
+ ## Changelog
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+
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+ Directory-based, grouped by minor series via the `.x` semver-wildcard convention. Source of truth: `changelog/<major.minor>.x/<version>.md` (e.g. `changelog/0.6.x/0.6.12.md`) — one file per release, shipped in the npm package. At release, author the per-version file with a concrete version and date, then run `bun run changelog:build` to regenerate the rollup. `changelog/template.md` is a **pristine format reference** — never edited or moved. `CHANGELOG.md` is a **navigation index** regenerated by `bun run changelog:build` — devcheck hard-fails on drift; never hand-edit it.
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  ---
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@@ -304,7 +333,7 @@ import { getOpenAlexService } from '@/services/openalex/openalex-service.js';
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305
334
  ## Checklist
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335
 
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- - [ ] Zod schemas: all fields have `.describe()`, only JSON-Schema-serializable types (no `z.custom()`, `z.date()`, `z.transform()`, etc.)
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+ - [ ] Zod schemas: all fields have `.describe()`, only JSON-Schema-serializable types (no `z.custom()`, `z.date()`, `z.transform()`, `z.bigint()`, `z.symbol()`, `z.void()`, `z.map()`, `z.set()`, `z.function()`, `z.nan()`)
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  - [ ] Optional nested objects: handler guards for empty inner values from form-based clients (`if (input.obj?.field && ...)`, not just `if (input.obj)`). When regex/length constraints matter, use `z.union([z.literal(''), z.string().regex(...).describe(...)])` — literal variants are exempt from `describe-on-fields`.
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  - [ ] `format()` renders every terminal field in `output` — enforced by `format-parity` linter via sentinel injection (locale-aware: digit-group separators stripped before matching)
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  - [ ] JSDoc `@fileoverview` + `@module` on every file
package/README.md CHANGED
@@ -1,12 +1,21 @@
1
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  <div align="center">
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  <h1>@cyanheads/openalex-mcp-server</h1>
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- <p><b>Access the OpenAlex academic research catalog - 270M+ publications through MCP. STDIO & Streamable HTTP.</b></p>
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- <p><b>4 Tools &middot; 2 Prompts</b></p>
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+ <p><b>Access the OpenAlex academic research catalog - 270M+ publications through MCP. STDIO & Streamable HTTP.</b>
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+ <div>4 Tools &bull; 2 Prompts</div>
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+ </p>
5
6
  </div>
6
7
 
7
8
  <div align="center">
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9
- [![Version](https://img.shields.io/badge/Version-0.6.12-blue.svg?style=flat-square)](./CHANGELOG.md) [![Framework](https://img.shields.io/badge/Built%20on-@cyanheads/mcp--ts--core-259?style=flat-square)](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) [![MCP SDK](https://img.shields.io/badge/MCP%20SDK-^1.29.0-green.svg?style=flat-square)](https://modelcontextprotocol.io/) [![License](https://img.shields.io/badge/License-Apache%202.0-orange.svg?style=flat-square)](./LICENSE) [![TypeScript](https://img.shields.io/badge/TypeScript-^6.0.3-3178C6.svg?style=flat-square)](https://www.typescriptlang.org/)
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+ [![Version](https://img.shields.io/badge/Version-0.6.14-blue.svg?style=flat-square)](./CHANGELOG.md) [![License](https://img.shields.io/badge/License-Apache%202.0-orange.svg?style=flat-square)](./LICENSE) [![Docker](https://img.shields.io/badge/Docker-ghcr.io-2496ED?style=flat-square&logo=docker&logoColor=white)](https://github.com/users/cyanheads/packages/container/package/openalex-mcp-server) [![MCP SDK](https://img.shields.io/badge/MCP%20SDK-^1.29.0-green.svg?style=flat-square)](https://modelcontextprotocol.io/) [![npm](https://img.shields.io/npm/v/@cyanheads/openalex-mcp-server?style=flat-square&logo=npm&logoColor=white)](https://www.npmjs.com/package/@cyanheads/openalex-mcp-server) [![TypeScript](https://img.shields.io/badge/TypeScript-^6.0.3-3178C6.svg?style=flat-square)](https://www.typescriptlang.org/) [![Bun](https://img.shields.io/badge/Bun-v1.3.0-blueviolet.svg?style=flat-square)](https://bun.sh/)
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+
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+ </div>
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+
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+ <div align="center">
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+
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+ [![Install in Claude Desktop](https://img.shields.io/badge/Install_in-Claude_Desktop-D97757?style=for-the-badge&logo=anthropic&logoColor=white)](https://github.com/cyanheads/openalex-mcp-server/releases/latest/download/openalex-mcp-server.mcpb) [![Install in Cursor](https://cursor.com/deeplink/mcp-install-dark.svg)](https://cursor.com/en/install-mcp?name=openalex-mcp-server&config=eyJjb21tYW5kIjoibnB4IiwiYXJncyI6WyIteSIsIkBjeWFuaGVhZHMvb3BlbmFsZXgtbWNwLXNlcnZlciJdfQ==) [![Install in VS Code](https://img.shields.io/badge/VS_Code-Install_Server-0098FF?style=for-the-badge&logo=visualstudiocode&logoColor=white)](https://vscode.dev/redirect?url=vscode:mcp/install?%7B%22name%22%3A%22openalex-mcp-server%22%2C%22command%22%3A%22npx%22%2C%22args%22%3A%5B%22-y%22%2C%22%40cyanheads/openalex-mcp-server%22%5D%7D)
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+ [![Framework](https://img.shields.io/badge/Built%20on-@cyanheads/mcp--ts--core-67E8F9?style=flat-square)](https://www.npmjs.com/package/@cyanheads/mcp-ts-core)
10
19
 
11
20
  </div>
12
21
 
@@ -164,7 +173,7 @@ bun install
164
173
 
165
174
  | Variable | Description | Default |
166
175
  |:---------|:------------|:--------|
167
- | `OPENALEX_API_KEY` | **Required.** Email address for the OpenAlex [polite pool](https://docs.openalex.org/how-to-use-the-api/rate-limits-and-authentication#the-polite-pool) (faster rate limits). | — |
176
+ | `OPENALEX_API_KEY` | **Optional.** Email address for the OpenAlex [polite pool](https://docs.openalex.org/how-to-use-the-api/rate-limits-and-authentication#the-polite-pool) (10x faster rate limits). Without it, anonymous rate limits apply. | — |
168
177
  | `OPENALEX_BASE_URL` | OpenAlex API base URL. | `https://api.openalex.org` |
169
178
  | `MCP_TRANSPORT_TYPE` | Transport: `stdio` or `http`. | `stdio` |
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179
  | `MCP_HTTP_PORT` | Port for HTTP server. | `3010` |
package/dist/config/server-config.d.ts CHANGED
@@ -4,7 +4,7 @@
4
4
  */
5
5
  import { z } from '@cyanheads/mcp-ts-core';
6
6
  declare const ServerConfigSchema: z.ZodObject<{
7
- apiKey: z.ZodString;
7
+ apiKey: z.ZodDefault<z.ZodString>;
8
8
  baseUrl: z.ZodDefault<z.ZodString>;
9
9
  }, z.core.$strip>;
10
10
  export type ServerConfig = z.infer<typeof ServerConfigSchema>;
package/dist/config/server-config.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"server-config.d.ts","sourceRoot":"","sources":["../../src/config/server-config.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAE3C,QAAA,MAAM,kBAAkB;;;iBAGtB,CAAC;AAEH,MAAM,MAAM,YAAY,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,kBAAkB,CAAC,CAAC;AAI9D,wBAAgB,eAAe,IAAI,YAAY,CAM9C"}
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+ {"version":3,"file":"server-config.d.ts","sourceRoot":"","sources":["../../src/config/server-config.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAE3C,QAAA,MAAM,kBAAkB;;;iBAQtB,CAAC;AAEH,MAAM,MAAM,YAAY,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,kBAAkB,CAAC,CAAC;AAI9D,wBAAgB,eAAe,IAAI,YAAY,CAM9C"}
package/dist/config/server-config.js CHANGED
@@ -4,7 +4,10 @@
4
4
  */
5
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  import { z } from '@cyanheads/mcp-ts-core';
6
6
  const ServerConfigSchema = z.object({
7
- apiKey: z.string().min(1).describe('OpenAlex API key'),
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+ apiKey: z
8
+ .string()
9
+ .default('')
10
+ .describe('OpenAlex API key or mailto email — optional (without: anonymous rate limits; with: polite pool)'),
8
11
  baseUrl: z.string().url().default('https://api.openalex.org').describe('OpenAlex API base URL'),
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12
  });
10
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  let _config;
package/dist/config/server-config.js.map CHANGED
@@ -1 +1 @@
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- {"version":3,"file":"server-config.js","sourceRoot":"","sources":["../../src/config/server-config.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAE3C,MAAM,kBAAkB,GAAG,CAAC,CAAC,MAAM,CAAC;IAClC,MAAM,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,kBAAkB,CAAC;IACtD,OAAO,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,GAAG,EAAE,CAAC,OAAO,CAAC,0BAA0B,CAAC,CAAC,QAAQ,CAAC,uBAAuB,CAAC;CAChG,CAAC,CAAC;AAIH,IAAI,OAAiC,CAAC;AAEtC,MAAM,UAAU,eAAe;IAC7B,OAAO,KAAK,kBAAkB,CAAC,KAAK,CAAC;QACnC,MAAM,EAAE,OAAO,CAAC,GAAG,CAAC,gBAAgB;QACpC,OAAO,EAAE,OAAO,CAAC,GAAG,CAAC,iBAAiB;KACvC,CAAC,CAAC;IACH,OAAO,OAAO,CAAC;AACjB,CAAC"}
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+ {"version":3,"file":"server-config.js","sourceRoot":"","sources":["../../src/config/server-config.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAE3C,MAAM,kBAAkB,GAAG,CAAC,CAAC,MAAM,CAAC;IAClC,MAAM,EAAE,CAAC;SACN,MAAM,EAAE;SACR,OAAO,CAAC,EAAE,CAAC;SACX,QAAQ,CACP,iGAAiG,CAClG;IACH,OAAO,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,GAAG,EAAE,CAAC,OAAO,CAAC,0BAA0B,CAAC,CAAC,QAAQ,CAAC,uBAAuB,CAAC;CAChG,CAAC,CAAC;AAIH,IAAI,OAAiC,CAAC;AAEtC,MAAM,UAAU,eAAe;IAC7B,OAAO,KAAK,kBAAkB,CAAC,KAAK,CAAC;QACnC,MAAM,EAAE,OAAO,CAAC,GAAG,CAAC,gBAAgB;QACpC,OAAO,EAAE,OAAO,CAAC,GAAG,CAAC,iBAAiB;KACvC,CAAC,CAAC;IACH,OAAO,OAAO,CAAC;AACjB,CAAC"}
package/dist/mcp-server/prompts/definitions/literature-review.prompt.d.ts CHANGED
@@ -5,7 +5,7 @@
5
5
  import { z } from '@cyanheads/mcp-ts-core';
6
6
  export declare const literatureReviewPrompt: import("@cyanheads/mcp-ts-core").PromptDefinition<z.ZodObject<{
7
7
  topic: z.ZodString;
8
- scope: z.ZodDefault<z.ZodEnum<{
8
+ scope: z.ZodOptional<z.ZodEnum<{
9
9
  narrow: "narrow";
10
10
  broad: "broad";
11
11
  }>>;
package/dist/mcp-server/prompts/definitions/literature-review.prompt.d.ts.map CHANGED
@@ -1 +1 @@
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- {"version":3,"file":"literature-review.prompt.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/prompts/definitions/literature-review.prompt.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAU,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAEnD,eAAO,MAAM,sBAAsB;;;;;;kBAuDjC,CAAC"}
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+ {"version":3,"file":"literature-review.prompt.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/prompts/definitions/literature-review.prompt.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAU,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAEnD,eAAO,MAAM,sBAAsB;;;;;;kBA4DjC,CAAC"}
package/dist/mcp-server/prompts/definitions/literature-review.prompt.js CHANGED
@@ -12,28 +12,30 @@ export const literatureReviewPrompt = prompt('openalex_literature_review', {
12
12
  .describe('Research topic or question to review (e.g., "CRISPR off-target effects in human cell lines").'),
13
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  scope: z
14
14
  .enum(['narrow', 'broad'])
15
- .default('narrow')
16
- .describe('"narrow": focused on specific question. "broad": survey of the field.'),
15
+ .optional()
16
+ .describe('"narrow": focused on specific question. "broad": survey of the field. Defaults to "narrow" if omitted.'),
17
17
  }),
18
- generate: (args) => [
19
- {
20
- role: 'user',
21
- content: {
22
- type: 'text',
23
- text: `Conduct a systematic literature review on: "${args.topic}"
18
+ generate: (args) => {
19
+ const scope = args.scope ?? 'narrow';
20
+ return [
21
+ {
22
+ role: 'user',
23
+ content: {
24
+ type: 'text',
25
+ text: `Conduct a systematic literature review on: "${args.topic}"
24
26
 
25
- Scope: ${args.scope}
27
+ Scope: ${scope}
26
28
 
27
29
  Follow this workflow using the OpenAlex tools:
28
30
 
29
31
  1. **Resolve entities** — Use openalex_resolve_name to identify key authors, institutions, or topics related to "${args.topic}". Collect their OpenAlex IDs.
30
32
 
31
- 2. **Search literature** — Use openalex_search_entities to find relevant works.${args.scope === 'narrow'
32
- ? `
33
+ 2. **Search literature** — Use openalex_search_entities to find relevant works.${scope === 'narrow'
34
+ ? `
33
35
  - Use exact search mode with specific phrases
34
36
  - Filter tightly by resolved topic IDs
35
37
  - Focus on a single topic cluster`
36
- : `
38
+ : `
37
39
  - Try keyword search for the topic
38
40
  - Use semantic search for conceptually related work across subfields
39
41
  - Search with multiple related topic IDs to capture adjacent areas`}
@@ -41,7 +43,7 @@ Follow this workflow using the OpenAlex tools:
41
43
 
42
44
  3. **Identify key papers** — Sort by cited_by_count to find landmark works. Use openalex_search_entities with id to get full details on the most important ones.
43
45
 
44
- 4. **Trace citations** — For key papers, search with the cited_by filter to find subsequent work, and the cites filter to find foundational work.
46
+ 4. **Trace citations** — For each key paper, use openalex_get_citation_graph with direction "cites" to find subsequent work that cites it, and direction "cited_by" to find foundational work it references.
45
47
 
46
48
  5. **Analyze the landscape** — Use openalex_analyze_trends to understand:
47
49
  - Publication volume over time (group_by: publication_year)
@@ -49,8 +51,9 @@ Follow this workflow using the OpenAlex tools:
49
51
  - Open access availability (group_by: oa_status)
50
52
 
51
53
  6. **Synthesize** — Summarize findings: key themes, seminal papers, active research fronts, gaps in the literature, and methodological trends.`,
54
+ },
52
55
  },
53
- },
54
- ],
56
+ ];
57
+ },
55
58
  });
56
59
  //# sourceMappingURL=literature-review.prompt.js.map
package/dist/mcp-server/prompts/definitions/literature-review.prompt.js.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"literature-review.prompt.js","sourceRoot":"","sources":["../../../../src/mcp-server/prompts/definitions/literature-review.prompt.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAEnD,MAAM,CAAC,MAAM,sBAAsB,GAAG,MAAM,CAAC,4BAA4B,EAAE;IACzE,WAAW,EACT,wHAAwH;IAC1H,SAAS,EACP,2HAA2H;IAC7H,IAAI,EAAE,CAAC,CAAC,MAAM,CAAC;QACb,KAAK,EAAE,CAAC;aACL,MAAM,EAAE;aACR,QAAQ,CACP,+FAA+F,CAChG;QACH,KAAK,EAAE,CAAC;aACL,IAAI,CAAC,CAAC,QAAQ,EAAE,OAAO,CAAC,CAAC;aACzB,OAAO,CAAC,QAAQ,CAAC;aACjB,QAAQ,CAAC,uEAAuE,CAAC;KACrF,CAAC;IACF,QAAQ,EAAE,CAAC,IAAI,EAAE,EAAE,CAAC;QAClB;YACE,IAAI,EAAE,MAAM;YACZ,OAAO,EAAE;gBACP,IAAI,EAAE,MAAM;gBACZ,IAAI,EAAE,+CAA+C,IAAI,CAAC,KAAK;;SAE9D,IAAI,CAAC,KAAK;;;;mHAIgG,IAAI,CAAC,KAAK;;iFAGnH,IAAI,CAAC,KAAK,KAAK,QAAQ;oBACrB,CAAC,CAAC;;;qCAGuB;oBACzB,CAAC,CAAC;;;sEAIN;;;;;;;;;;;;+IAYuI;aACxI;SACF;KACF;CACF,CAAC,CAAC"}
1
+ {"version":3,"file":"literature-review.prompt.js","sourceRoot":"","sources":["../../../../src/mcp-server/prompts/definitions/literature-review.prompt.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAE,MAAM,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAEnD,MAAM,CAAC,MAAM,sBAAsB,GAAG,MAAM,CAAC,4BAA4B,EAAE;IACzE,WAAW,EACT,wHAAwH;IAC1H,SAAS,EACP,2HAA2H;IAC7H,IAAI,EAAE,CAAC,CAAC,MAAM,CAAC;QACb,KAAK,EAAE,CAAC;aACL,MAAM,EAAE;aACR,QAAQ,CACP,+FAA+F,CAChG;QACH,KAAK,EAAE,CAAC;aACL,IAAI,CAAC,CAAC,QAAQ,EAAE,OAAO,CAAC,CAAC;aACzB,QAAQ,EAAE;aACV,QAAQ,CACP,wGAAwG,CACzG;KACJ,CAAC;IACF,QAAQ,EAAE,CAAC,IAAI,EAAE,EAAE;QACjB,MAAM,KAAK,GAAG,IAAI,CAAC,KAAK,IAAI,QAAQ,CAAC;QACrC,OAAO;YACL;gBACE,IAAI,EAAE,MAAM;gBACZ,OAAO,EAAE;oBACP,IAAI,EAAE,MAAM;oBACZ,IAAI,EAAE,+CAA+C,IAAI,CAAC,KAAK;;SAEhE,KAAK;;;;mHAIqG,IAAI,CAAC,KAAK;;iFAGjH,KAAK,KAAK,QAAQ;wBAChB,CAAC,CAAC;;;qCAGqB;wBACvB,CAAC,CAAC;;;sEAIN;;;;;;;;;;;;+IAYqI;iBACtI;aACF;SACF,CAAC;IACJ,CAAC;CACF,CAAC,CAAC"}
package/dist/services/openalex/openalex-service.d.ts.map CHANGED
@@ -1 +1 @@
1
- {"version":3,"file":"openalex-service.d.ts","sourceRoot":"","sources":["../../../src/services/openalex/openalex-service.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,wBAAwB,CAAC;AAoBtD,OAAO,EACL,KAAK,aAAa,EAClB,KAAK,aAAa,EAClB,KAAK,kBAAkB,EACvB,KAAK,kBAAkB,EAIvB,KAAK,YAAY,EACjB,KAAK,YAAY,EAClB,MAAM,YAAY,CAAC;AAcpB;;;;;;;;GAQG;AACH,wBAAgB,WAAW,CAAC,EAAE,EAAE,MAAM,GAAG,MAAM,CA6C9C;AA+UD,cAAM,eAAe;IACnB,OAAO,CAAC,QAAQ,CAAC,OAAO,CAAS;IACjC,OAAO,CAAC,QAAQ,CAAC,MAAM,CAAS;;IAQhC,yFAAyF;IACzF,OAAO,CAAC,OAAO;IAoCf,OAAO,CAAC,2BAA2B;IA4CnC,OAAO,CAAC,aAAa;IAqCrB,sEAAsE;IAChE,MAAM,CAAC,MAAM,EAAE,YAAY,EAAE,GAAG,EAAE,OAAO,GAAG,OAAO,CAAC,YAAY,CAAC;IA8FvE,4BAA4B;IACtB,OAAO,CAAC,MAAM,EAAE,aAAa,EAAE,GAAG,EAAE,OAAO,GAAG,OAAO,CAAC,aAAa,CAAC;IAoC1E,oCAAoC;IAC9B,YAAY,CAAC,MAAM,EAAE,kBAAkB,EAAE,GAAG,EAAE,OAAO,GAAG,OAAO,CAAC,kBAAkB,CAAC;CAuB1F;AAID,wBAAgB,mBAAmB,IAAI,IAAI,CAE1C;AAED,wBAAgB,kBAAkB,IAAI,eAAe,CAIpD"}
1
+ {"version":3,"file":"openalex-service.d.ts","sourceRoot":"","sources":["../../../src/services/openalex/openalex-service.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,wBAAwB,CAAC;AAoBtD,OAAO,EACL,KAAK,aAAa,EAClB,KAAK,aAAa,EAClB,KAAK,kBAAkB,EACvB,KAAK,kBAAkB,EAIvB,KAAK,YAAY,EACjB,KAAK,YAAY,EAClB,MAAM,YAAY,CAAC;AA+BpB;;;;;;;;GAQG;AACH,wBAAgB,WAAW,CAAC,EAAE,EAAE,MAAM,GAAG,MAAM,CA6C9C;AA+UD,cAAM,eAAe;IACnB,OAAO,CAAC,QAAQ,CAAC,OAAO,CAAS;IACjC,OAAO,CAAC,QAAQ,CAAC,MAAM,CAAS;;IAQhC,yFAAyF;IACzF,OAAO,CAAC,OAAO;IAoCf,OAAO,CAAC,2BAA2B;IA4CnC,OAAO,CAAC,aAAa;IAqCrB,sEAAsE;IAChE,MAAM,CAAC,MAAM,EAAE,YAAY,EAAE,GAAG,EAAE,OAAO,GAAG,OAAO,CAAC,YAAY,CAAC;IA8FvE,4BAA4B;IACtB,OAAO,CAAC,MAAM,EAAE,aAAa,EAAE,GAAG,EAAE,OAAO,GAAG,OAAO,CAAC,aAAa,CAAC;IA2C1E,oCAAoC;IAC9B,YAAY,CAAC,MAAM,EAAE,kBAAkB,EAAE,GAAG,EAAE,OAAO,GAAG,OAAO,CAAC,kBAAkB,CAAC;CAuB1F;AAID,wBAAgB,mBAAmB,IAAI,IAAI,CAE1C;AAED,wBAAgB,kBAAkB,IAAI,eAAe,CAIpD"}
package/dist/services/openalex/openalex-service.js CHANGED
@@ -7,6 +7,22 @@ import { fetchWithTimeout, httpStatusToErrorCode, withRetry } from '@cyanheads/m
7
7
  import { getServerConfig } from '../../config/server-config.js';
8
8
  import { DEFAULT_SELECT, ENTITY_TYPES, } from './types.js';
9
9
  import { redactUrlsInMessage } from './url-redaction.js';
10
+ /**
11
+ * OpenAlex group_by fields that produce only true/false groups and reject
12
+ * cursor pagination (HTTP 400). These fields never have more than two groups,
13
+ * so cursor-based paging is unnecessary and the upstream rejects `cursor=*`.
14
+ */
15
+ const BOOLEAN_GROUP_BY_FIELDS = new Set([
16
+ 'is_retracted',
17
+ 'is_paratext',
18
+ 'is_oa',
19
+ 'has_orcid',
20
+ 'has_doi',
21
+ 'has_raw_affiliation_string',
22
+ 'open_access.is_oa',
23
+ 'apc_paid',
24
+ 'has_fulltext',
25
+ ]);
10
26
  /**
11
27
  * Build an OpenAlex filter string from a key-value record.
12
28
  * Input: { "cited_by_count": ">100", "is_oa": "true" }
@@ -374,7 +390,8 @@ class OpenAlexService {
374
390
  const operation = `OpenAlex ${path}`;
375
391
  const requestContext = toRequestContext(ctx, operation);
376
392
  const url = new URL(`${this.baseUrl}${path}`);
377
- url.searchParams.set('mailto', this.apiKey);
393
+ if (this.apiKey)
394
+ url.searchParams.set('mailto', this.apiKey);
378
395
  for (const [key, value] of Object.entries(params)) {
379
396
  if (value)
380
397
  url.searchParams.set(key, value);
@@ -548,11 +565,18 @@ class OpenAlexService {
548
565
  if (params.perPage !== undefined) {
549
566
  queryParams.per_page = String(params.perPage);
550
567
  }
551
- // Only send cursor when explicitly provided — boolean group_by fields
552
- // (is_retracted, has_orcid, etc.) reject cursor pagination entirely.
568
+ // Boolean group_by fields (is_retracted, has_orcid, etc.) only produce
569
+ // two groups (true/false) and reject cursor pagination with a 400.
570
+ // All other fields require cursor=* on the first request to enable
571
+ // cursor-based pagination — without it, next_cursor is never returned.
572
+ const baseField = params.groupBy.replace(/:include_unknown$/, '');
573
+ const isBooleanGroupBy = BOOLEAN_GROUP_BY_FIELDS.has(baseField);
553
574
  if (params.cursor) {
554
575
  queryParams.cursor = params.cursor;
555
576
  }
577
+ else if (!isBooleanGroupBy) {
578
+ queryParams.cursor = '*';
579
+ }
556
580
  const data = (await this.request(`/${params.entityType}`, queryParams, ctx));
557
581
  return {
558
582
  meta: {
package/dist/services/openalex/openalex-service.js.map CHANGED
@@ -1 +1 @@
1
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package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@cyanheads/openalex-mcp-server",
3
- "version": "0.6.12",
3
+ "version": "0.6.14",
4
4
  "description": "Access the OpenAlex academic research catalog - 270M+ publications through MCP. STDIO & Streamable HTTP.",
5
5
  "mcpName": "io.github.cyanheads/openalex-mcp-server",
6
6
  "type": "module",
@@ -18,6 +18,10 @@
18
18
  "tree": "bun scripts/tree.ts",
19
19
  "format": "biome check --write --unsafe .",
20
20
  "lint:mcp": "bun scripts/lint-mcp.ts",
21
+ "lint:packaging": "bun scripts/lint-packaging.ts",
22
+ "list-skills": "bun scripts/list-skills.ts",
23
+ "bundle": "bun run build && npx -y @anthropic-ai/mcpb pack . dist/openalex-mcp-server.mcpb",
24
+ "audit:refresh": "rm -f bun.lock && bun install && bun audit",
21
25
  "changelog:build": "bun scripts/build-changelog.ts",
22
26
  "changelog:check": "bun scripts/build-changelog.ts --check",
23
27
  "test": "vitest run",
@@ -68,8 +72,9 @@
68
72
  "access": "public"
69
73
  },
70
74
  "dependencies": {
71
- "@cyanheads/mcp-ts-core": "^0.9.1",
72
- "pino-pretty": "^13.1.3"
75
+ "@cyanheads/mcp-ts-core": "^0.9.6",
76
+ "pino-pretty": "^13.1.3",
77
+ "zod": "^4.4.3"
73
78
  },
74
79
  "devDependencies": {
75
80
  "@biomejs/biome": "^2.4.15",
package/server.json CHANGED
@@ -1,12 +1,12 @@
1
1
  {
2
2
  "$schema": "https://static.modelcontextprotocol.io/schemas/2025-12-11/server.schema.json",
3
3
  "name": "io.github.cyanheads/openalex-mcp-server",
4
- "description": "Access the OpenAlex academic research catalog - 270M+ publications via MCP. STDIO & HTTP.",
4
+ "description": "Access the OpenAlex academic research catalog — 270M+ publications.",
5
5
  "repository": {
6
6
  "url": "https://github.com/cyanheads/openalex-mcp-server",
7
7
  "source": "github"
8
8
  },
9
- "version": "0.6.12",
9
+ "version": "0.6.14",
10
10
  "remotes": [
11
11
  {
12
12
  "type": "streamable-http",
@@ -19,7 +19,7 @@
19
19
  "registryBaseUrl": "https://registry.npmjs.org",
20
20
  "identifier": "@cyanheads/openalex-mcp-server",
21
21
  "runtimeHint": "node",
22
- "version": "0.6.12",
22
+ "version": "0.6.14",
23
23
  "packageArguments": [
24
24
  {
25
25
  "type": "positional",
@@ -33,9 +33,9 @@
33
33
  "environmentVariables": [
34
34
  {
35
35
  "name": "OPENALEX_API_KEY",
36
- "description": "API key from openalex.org (free).",
36
+ "description": "OpenAlex API key or mailto email \u2014 optional. Without: anonymous rate limits. With: polite pool access.",
37
37
  "format": "string",
38
- "isRequired": true
38
+ "isRequired": false
39
39
  },
40
40
  {
41
41
  "name": "OPENALEX_BASE_URL",
@@ -61,7 +61,7 @@
61
61
  "registryBaseUrl": "https://registry.npmjs.org",
62
62
  "identifier": "@cyanheads/openalex-mcp-server",
63
63
  "runtimeHint": "node",
64
- "version": "0.6.12",
64
+ "version": "0.6.14",
65
65
  "packageArguments": [
66
66
  {
67
67
  "type": "positional",
@@ -75,9 +75,9 @@
75
75
  "environmentVariables": [
76
76
  {
77
77
  "name": "OPENALEX_API_KEY",
78
- "description": "API key from openalex.org (free).",
78
+ "description": "OpenAlex API key or mailto email \u2014 optional. Without: anonymous rate limits. With: polite pool access.",
79
79
  "format": "string",
80
- "isRequired": true
80
+ "isRequired": false
81
81
  },
82
82
  {
83
83
  "name": "OPENALEX_BASE_URL",