@cyanheads/openalex-mcp-server 0.6.12 → 0.6.13

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Files changed (10) hide show
  1. package/CLAUDE.md +43 -14
  2. package/README.md +13 -4
  3. package/dist/config/server-config.d.ts +1 -1
  4. package/dist/config/server-config.d.ts.map +1 -1
  5. package/dist/config/server-config.js +4 -1
  6. package/dist/config/server-config.js.map +1 -1
  7. package/dist/services/openalex/openalex-service.js +2 -1
  8. package/dist/services/openalex/openalex-service.js.map +1 -1
  9. package/package.json +8 -3
  10. package/server.json +8 -8
package/CLAUDE.md CHANGED
@@ -1,8 +1,9 @@
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  # Agent Protocol
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  **Server:** openalex-mcp-server
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- **Version:** 0.6.10
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- **Framework:** [@cyanheads/mcp-ts-core](https://www.npmjs.com/package/@cyanheads/mcp-ts-core)
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+ **Version:** 0.6.13
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+ **Framework:** [@cyanheads/mcp-ts-core](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) `^0.9.6`
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+ **Engines:** Bun ≥1.3.0, Node ≥24.0.0
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  > **Read the framework docs first:** `node_modules/@cyanheads/mcp-ts-core/CLAUDE.md` contains the full API reference — builders, Context, error codes, exports, patterns. This file covers server-specific conventions only.
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@@ -10,7 +11,7 @@
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  ## Domain
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- [OpenAlex](https://openalex.org) is a fully open catalog of the global research system — 270M+ works, 90M+ authors, 100K+ sources. CC0 data, free API key required.
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+ [OpenAlex](https://openalex.org) is a fully open catalog of the global research system — 270M+ works, 90M+ authors, 100K+ sources. CC0 data, no API key required (email address optional for polite pool access).
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  **Entity types:** works, authors, sources, institutions, topics, keywords, publishers, funders. All share a uniform API (list/filter, search, get-by-ID, group-by, autocomplete).
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@@ -34,21 +35,27 @@ No resources — entity lookups need `select` for payload control, which fits to
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  | Env Var | Required | Description |
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  |:--------|:---------|:------------|
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- | `OPENALEX_API_KEY` | Yes | API key from openalex.org |
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+ | `OPENALEX_API_KEY` | No | Email for the OpenAlex polite pool (10x faster rate limits); omit for anonymous access |
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  | `OPENALEX_BASE_URL` | No | Default: `https://api.openalex.org` |
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  ---
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  ## What's Next?
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- When the user asks what to do next, what's left, or needs direction, suggest relevant options based on the current project state:
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+ When the user asks what's next or needs direction, suggest options based on the current project state. Common next steps:
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- 1. **Add tests** — scaffold tests for existing definitions using the `add-test` skill
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- 2. **Field-test definitions** — exercise tools/resources/prompts with real inputs using the `field-test` skill
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- 3. **Run `devcheck`** — lint, format, typecheck, and security audit
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- 4. **Run the `security-pass` skill** — audit handlers for MCP-specific security gaps: output injection, scope blast radius, input sinks, tenant isolation
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- 5. **Run the `polish-docs-meta` skill** — finalize README, CHANGELOG, metadata, and agent protocol for shipping
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- 6. **Run the `maintenance` skill** — sync skills and dependencies after framework updates
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+ 1. **Re-run the `setup` skill** — ensures CLAUDE.md, skills, structure, and metadata are populated and up to date with the current codebase
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+ 2. **Run the `design-mcp-server` skill** — if the tool/resource surface hasn't been mapped yet, work through domain design
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+ 3. **Add tools/resources/prompts** — scaffold new definitions using the `add-tool`, `add-app-tool`, `add-resource`, `add-prompt` skills
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+ 4. **Add services** — scaffold domain service integrations using the `add-service` skill
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+ 5. **Add tests** — scaffold tests for existing definitions using the `add-test` skill
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+ 6. **Field-test definitions** — exercise tools/resources/prompts with real inputs using the `field-test` skill, get a report of issues and pain points
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+ 7. **Run `devcheck`** — lint, format, typecheck, and security audit
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+ 8. **Run the `security-pass` skill** — audit handlers for MCP-specific security gaps: output injection, scope blast radius, input sinks, tenant isolation
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+ 9. **Run the `polish-docs-meta` skill** — finalize README, CHANGELOG, metadata, and agent protocol for shipping
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+ 10. **Run the `maintenance` skill** — investigate changelogs, adopt upstream changes, and sync skills after `bun update --latest`
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+
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+ Tailor suggestions to what's actually missing or stale — don't recite the full list every time.
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  ---
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@@ -135,8 +142,11 @@ Handlers receive a unified `ctx` object. Key properties:
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  | Property | Description |
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  |:---------|:------------|
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  | `ctx.log` | Request-scoped logger — `.debug()`, `.info()`, `.notice()`, `.warning()`, `.error()`. Auto-correlates requestId, traceId, tenantId. |
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+ | `ctx.state` | Tenant-scoped KV — `.get(key)`, `.set(key, value, { ttl? })`, `.delete(key)`, `.list(prefix, { cursor, limit })`. Accepts any serializable value. |
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+ | `ctx.elicit` | Ask user for structured input. **Check for presence first:** `if (ctx.elicit) { ... }` |
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+ | `ctx.sample` | Request LLM completion from the client. **Check for presence first:** `if (ctx.sample) { ... }` |
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  | `ctx.signal` | `AbortSignal` for cancellation. Passed to `fetch()` in the OpenAlex service. |
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- | `ctx.state` | Tenant-scoped KV — `.get(key)`, `.set(key, value, { ttl? })`, `.delete(key)`, `.list(prefix, { cursor, limit })`. Not currently used but available. |
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+ | `ctx.progress` | Task progress (present when `task: true`) — `.setTotal(n)`, `.increment()`, `.update(message)`. |
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  | `ctx.fail` | Typed throw keyed by a declared `errors[]` contract — `ctx.fail(reason, msg?, data?)`. Auto-populates `data.reason` and resolves `code` from the contract. |
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  | `ctx.recoveryFor` | Opt-in resolver returning `{ recovery: { hint } }` for a declared reason. Spread into `data` at throw site to surface contract recovery on the wire. |
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  | `ctx.requestId` | Unique request ID. |
@@ -264,13 +274,32 @@ When you complete a skill's checklist, check the boxes and add a completion time
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  | `bun run build` | Compile TypeScript |
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  | `bun run rebuild` | Clean + build |
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  | `bun run clean` | Remove build artifacts |
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- | `bun run devcheck` | Lint + format + typecheck + security |
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+ | `bun run devcheck` | Lint + format + typecheck + security + changelog sync |
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+ | `bun run audit:refresh` | Delete `bun.lock`, reinstall, re-audit. Use when `devcheck` flags a transitive advisory — stale lockfile can mask already-patched deps. If advisory survives, it's real. |
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  | `bun run tree` | Generate directory structure doc |
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  | `bun run format` | Auto-fix formatting |
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  | `bun run lint:mcp` | Validate MCP tool/prompt definitions |
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+ | `bun run list-skills` | List available skills |
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  | `bun run test` | Run tests |
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  | `bun run start:stdio` | Production mode (stdio, after `rebuild`) |
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  | `bun run start:http` | Production mode (HTTP, after `rebuild`) |
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+ | `bun run changelog:build` | Regenerate `CHANGELOG.md` from `changelog/*.md` |
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+ | `bun run changelog:check` | Verify `CHANGELOG.md` is in sync (used by devcheck) |
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+ | `bun run bundle` | Build and pack as `.mcpb` for one-click Claude Desktop install |
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+
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+ ---
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+
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+ ## Bundling
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+
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+ `bun run bundle` produces a `.mcpb` extension bundle for one-click install in Claude Desktop. MCPB is stdio-only — HTTP deployments are unaffected. Consumers who don't need it can delete `manifest.json` and `.mcpbignore`; `lint:packaging` skips cleanly.
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+
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+ **Adding an env var requires both files:** `server.json` (registry discovery, `environmentVariables[]`) and `manifest.json` (bundle install UX, `mcp_config.env` + `user_config`). `lint:packaging` (run by `devcheck`) verifies the env var names match.
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+
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+ ---
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+
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+ ## Changelog
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+
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+ Directory-based, grouped by minor series via the `.x` semver-wildcard convention. Source of truth: `changelog/<major.minor>.x/<version>.md` (e.g. `changelog/0.6.x/0.6.12.md`) — one file per release, shipped in the npm package. At release, author the per-version file with a concrete version and date, then run `bun run changelog:build` to regenerate the rollup. `changelog/template.md` is a **pristine format reference** — never edited or moved. `CHANGELOG.md` is a **navigation index** regenerated by `bun run changelog:build` — devcheck hard-fails on drift; never hand-edit it.
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  ---
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@@ -304,7 +333,7 @@ import { getOpenAlexService } from '@/services/openalex/openalex-service.js';
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  ## Checklist
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- - [ ] Zod schemas: all fields have `.describe()`, only JSON-Schema-serializable types (no `z.custom()`, `z.date()`, `z.transform()`, etc.)
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+ - [ ] Zod schemas: all fields have `.describe()`, only JSON-Schema-serializable types (no `z.custom()`, `z.date()`, `z.transform()`, `z.bigint()`, `z.symbol()`, `z.void()`, `z.map()`, `z.set()`, `z.function()`, `z.nan()`)
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  - [ ] Optional nested objects: handler guards for empty inner values from form-based clients (`if (input.obj?.field && ...)`, not just `if (input.obj)`). When regex/length constraints matter, use `z.union([z.literal(''), z.string().regex(...).describe(...)])` — literal variants are exempt from `describe-on-fields`.
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  - [ ] `format()` renders every terminal field in `output` — enforced by `format-parity` linter via sentinel injection (locale-aware: digit-group separators stripped before matching)
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  - [ ] JSDoc `@fileoverview` + `@module` on every file
package/README.md CHANGED
@@ -1,12 +1,21 @@
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  <div align="center">
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  <h1>@cyanheads/openalex-mcp-server</h1>
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- <p><b>Access the OpenAlex academic research catalog - 270M+ publications through MCP. STDIO & Streamable HTTP.</b></p>
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- <p><b>4 Tools &middot; 2 Prompts</b></p>
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+ <p><b>Access the OpenAlex academic research catalog - 270M+ publications through MCP. STDIO & Streamable HTTP.</b>
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+ <div>4 Tools &bull; 2 Prompts</div>
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+ </p>
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  </div>
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  <div align="center">
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- [![Version](https://img.shields.io/badge/Version-0.6.12-blue.svg?style=flat-square)](./CHANGELOG.md) [![Framework](https://img.shields.io/badge/Built%20on-@cyanheads/mcp--ts--core-259?style=flat-square)](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) [![MCP SDK](https://img.shields.io/badge/MCP%20SDK-^1.29.0-green.svg?style=flat-square)](https://modelcontextprotocol.io/) [![License](https://img.shields.io/badge/License-Apache%202.0-orange.svg?style=flat-square)](./LICENSE) [![TypeScript](https://img.shields.io/badge/TypeScript-^6.0.3-3178C6.svg?style=flat-square)](https://www.typescriptlang.org/)
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+ [![Version](https://img.shields.io/badge/Version-0.6.13-blue.svg?style=flat-square)](./CHANGELOG.md) [![License](https://img.shields.io/badge/License-Apache%202.0-orange.svg?style=flat-square)](./LICENSE) [![Docker](https://img.shields.io/badge/Docker-ghcr.io-2496ED?style=flat-square&logo=docker&logoColor=white)](https://github.com/users/cyanheads/packages/container/package/openalex-mcp-server) [![MCP SDK](https://img.shields.io/badge/MCP%20SDK-^1.29.0-green.svg?style=flat-square)](https://modelcontextprotocol.io/) [![npm](https://img.shields.io/npm/v/@cyanheads/openalex-mcp-server?style=flat-square&logo=npm&logoColor=white)](https://www.npmjs.com/package/@cyanheads/openalex-mcp-server) [![TypeScript](https://img.shields.io/badge/TypeScript-^6.0.3-3178C6.svg?style=flat-square)](https://www.typescriptlang.org/) [![Bun](https://img.shields.io/badge/Bun-v1.3.0-blueviolet.svg?style=flat-square)](https://bun.sh/)
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+ </div>
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+ <div align="center">
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+ [![Install in Claude Desktop](https://img.shields.io/badge/Install_in-Claude_Desktop-D97757?style=for-the-badge&logo=anthropic&logoColor=white)](https://github.com/cyanheads/openalex-mcp-server/releases/latest/download/openalex-mcp-server.mcpb) [![Install in Cursor](https://cursor.com/deeplink/mcp-install-dark.svg)](https://cursor.com/en/install-mcp?name=openalex-mcp-server&config=eyJtY3BTZXJ2ZXJzIjp7Im9wZW5hbGV4LW1jcC1zZXJ2ZXIiOnsiY29tbWFuZCI6Im5weCIsImFyZ3MiOlsiLXkiLCJAY3lhbmhlYWRzL29wZW5hbGV4LW1jcC1zZXJ2ZXJAbGF0ZXN0Il0sImVudiI6eyJNQ1BfVFJBTlNQT1JUX1RZUEUiOiJzdGRpbyIsIk1DUF9MT0dfTEVWRUwiOiJpbmZvIn19fX0=) [![Install in VS Code](https://img.shields.io/badge/VS_Code-Install_Server-0098FF?style=for-the-badge&logo=visualstudiocode&logoColor=white)](https://vscode.dev/redirect?url=vscode:mcp/install?%7B%22name%22%3A%22openalex-mcp-server%22%2C%22command%22%3A%22npx%22%2C%22args%22%3A%5B%22-y%22%2C%22%40cyanheads%2Fopenalex-mcp-server%40latest%22%5D%2C%22env%22%3A%7B%22MCP_TRANSPORT_TYPE%22%3A%22stdio%22%2C%22MCP_LOG_LEVEL%22%3A%22info%22%7D%7D)
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+ [![Framework](https://img.shields.io/badge/Built%20on-@cyanheads/mcp--ts--core-67E8F9?style=flat-square)](https://www.npmjs.com/package/@cyanheads/mcp-ts-core)
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  </div>
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@@ -164,7 +173,7 @@ bun install
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  | Variable | Description | Default |
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  |:---------|:------------|:--------|
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- | `OPENALEX_API_KEY` | **Required.** Email address for the OpenAlex [polite pool](https://docs.openalex.org/how-to-use-the-api/rate-limits-and-authentication#the-polite-pool) (faster rate limits). | — |
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+ | `OPENALEX_API_KEY` | **Optional.** Email address for the OpenAlex [polite pool](https://docs.openalex.org/how-to-use-the-api/rate-limits-and-authentication#the-polite-pool) (10x faster rate limits). Without it, anonymous rate limits apply. | — |
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  | `OPENALEX_BASE_URL` | OpenAlex API base URL. | `https://api.openalex.org` |
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  | `MCP_TRANSPORT_TYPE` | Transport: `stdio` or `http`. | `stdio` |
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  | `MCP_HTTP_PORT` | Port for HTTP server. | `3010` |
package/dist/config/server-config.d.ts CHANGED
@@ -4,7 +4,7 @@
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  */
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  import { z } from '@cyanheads/mcp-ts-core';
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  declare const ServerConfigSchema: z.ZodObject<{
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- apiKey: z.ZodString;
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+ apiKey: z.ZodDefault<z.ZodString>;
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  baseUrl: z.ZodDefault<z.ZodString>;
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  }, z.core.$strip>;
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  export type ServerConfig = z.infer<typeof ServerConfigSchema>;
package/dist/config/server-config.d.ts.map CHANGED
@@ -1 +1 @@
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- {"version":3,"file":"server-config.d.ts","sourceRoot":"","sources":["../../src/config/server-config.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAE3C,QAAA,MAAM,kBAAkB;;;iBAGtB,CAAC;AAEH,MAAM,MAAM,YAAY,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,kBAAkB,CAAC,CAAC;AAI9D,wBAAgB,eAAe,IAAI,YAAY,CAM9C"}
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+ {"version":3,"file":"server-config.d.ts","sourceRoot":"","sources":["../../src/config/server-config.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAE3C,QAAA,MAAM,kBAAkB;;;iBAQtB,CAAC;AAEH,MAAM,MAAM,YAAY,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,kBAAkB,CAAC,CAAC;AAI9D,wBAAgB,eAAe,IAAI,YAAY,CAM9C"}
package/dist/config/server-config.js CHANGED
@@ -4,7 +4,10 @@
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  */
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  import { z } from '@cyanheads/mcp-ts-core';
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  const ServerConfigSchema = z.object({
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- apiKey: z.string().min(1).describe('OpenAlex API key'),
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+ apiKey: z
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+ .string()
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+ .default('')
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+ .describe('OpenAlex API key or mailto email — optional (without: anonymous rate limits; with: polite pool)'),
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  baseUrl: z.string().url().default('https://api.openalex.org').describe('OpenAlex API base URL'),
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  });
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  let _config;
package/dist/config/server-config.js.map CHANGED
@@ -1 +1 @@
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- {"version":3,"file":"server-config.js","sourceRoot":"","sources":["../../src/config/server-config.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAE3C,MAAM,kBAAkB,GAAG,CAAC,CAAC,MAAM,CAAC;IAClC,MAAM,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,kBAAkB,CAAC;IACtD,OAAO,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,GAAG,EAAE,CAAC,OAAO,CAAC,0BAA0B,CAAC,CAAC,QAAQ,CAAC,uBAAuB,CAAC;CAChG,CAAC,CAAC;AAIH,IAAI,OAAiC,CAAC;AAEtC,MAAM,UAAU,eAAe;IAC7B,OAAO,KAAK,kBAAkB,CAAC,KAAK,CAAC;QACnC,MAAM,EAAE,OAAO,CAAC,GAAG,CAAC,gBAAgB;QACpC,OAAO,EAAE,OAAO,CAAC,GAAG,CAAC,iBAAiB;KACvC,CAAC,CAAC;IACH,OAAO,OAAO,CAAC;AACjB,CAAC"}
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+ {"version":3,"file":"server-config.js","sourceRoot":"","sources":["../../src/config/server-config.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AAE3C,MAAM,kBAAkB,GAAG,CAAC,CAAC,MAAM,CAAC;IAClC,MAAM,EAAE,CAAC;SACN,MAAM,EAAE;SACR,OAAO,CAAC,EAAE,CAAC;SACX,QAAQ,CACP,iGAAiG,CAClG;IACH,OAAO,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,GAAG,EAAE,CAAC,OAAO,CAAC,0BAA0B,CAAC,CAAC,QAAQ,CAAC,uBAAuB,CAAC;CAChG,CAAC,CAAC;AAIH,IAAI,OAAiC,CAAC;AAEtC,MAAM,UAAU,eAAe;IAC7B,OAAO,KAAK,kBAAkB,CAAC,KAAK,CAAC;QACnC,MAAM,EAAE,OAAO,CAAC,GAAG,CAAC,gBAAgB;QACpC,OAAO,EAAE,OAAO,CAAC,GAAG,CAAC,iBAAiB;KACvC,CAAC,CAAC;IACH,OAAO,OAAO,CAAC;AACjB,CAAC"}
package/dist/services/openalex/openalex-service.js CHANGED
@@ -374,7 +374,8 @@ class OpenAlexService {
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  const operation = `OpenAlex ${path}`;
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  const requestContext = toRequestContext(ctx, operation);
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  const url = new URL(`${this.baseUrl}${path}`);
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- url.searchParams.set('mailto', this.apiKey);
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+ if (this.apiKey)
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+ url.searchParams.set('mailto', this.apiKey);
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  for (const [key, value] of Object.entries(params)) {
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  if (value)
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  url.searchParams.set(key, value);
package/dist/services/openalex/openalex-service.js.map CHANGED
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package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@cyanheads/openalex-mcp-server",
3
- "version": "0.6.12",
3
+ "version": "0.6.13",
4
4
  "description": "Access the OpenAlex academic research catalog - 270M+ publications through MCP. STDIO & Streamable HTTP.",
5
5
  "mcpName": "io.github.cyanheads/openalex-mcp-server",
6
6
  "type": "module",
@@ -18,6 +18,10 @@
18
18
  "tree": "bun scripts/tree.ts",
19
19
  "format": "biome check --write --unsafe .",
20
20
  "lint:mcp": "bun scripts/lint-mcp.ts",
21
+ "lint:packaging": "bun scripts/lint-packaging.ts",
22
+ "list-skills": "bun scripts/list-skills.ts",
23
+ "bundle": "bun run build && npx -y @anthropic-ai/mcpb pack . dist/@cyanheads/openalex-mcp-server.mcpb",
24
+ "audit:refresh": "rm -f bun.lock && bun install && bun audit",
21
25
  "changelog:build": "bun scripts/build-changelog.ts",
22
26
  "changelog:check": "bun scripts/build-changelog.ts --check",
23
27
  "test": "vitest run",
@@ -68,8 +72,9 @@
68
72
  "access": "public"
69
73
  },
70
74
  "dependencies": {
71
- "@cyanheads/mcp-ts-core": "^0.9.1",
72
- "pino-pretty": "^13.1.3"
75
+ "@cyanheads/mcp-ts-core": "^0.9.6",
76
+ "pino-pretty": "^13.1.3",
77
+ "zod": "^4.4.3"
73
78
  },
74
79
  "devDependencies": {
75
80
  "@biomejs/biome": "^2.4.15",
package/server.json CHANGED
@@ -1,12 +1,12 @@
1
1
  {
2
2
  "$schema": "https://static.modelcontextprotocol.io/schemas/2025-12-11/server.schema.json",
3
3
  "name": "io.github.cyanheads/openalex-mcp-server",
4
- "description": "Access the OpenAlex academic research catalog - 270M+ publications via MCP. STDIO & HTTP.",
4
+ "description": "Access the OpenAlex academic research catalog — 270M+ publications.",
5
5
  "repository": {
6
6
  "url": "https://github.com/cyanheads/openalex-mcp-server",
7
7
  "source": "github"
8
8
  },
9
- "version": "0.6.12",
9
+ "version": "0.6.13",
10
10
  "remotes": [
11
11
  {
12
12
  "type": "streamable-http",
@@ -19,7 +19,7 @@
19
19
  "registryBaseUrl": "https://registry.npmjs.org",
20
20
  "identifier": "@cyanheads/openalex-mcp-server",
21
21
  "runtimeHint": "node",
22
- "version": "0.6.12",
22
+ "version": "0.6.13",
23
23
  "packageArguments": [
24
24
  {
25
25
  "type": "positional",
@@ -33,9 +33,9 @@
33
33
  "environmentVariables": [
34
34
  {
35
35
  "name": "OPENALEX_API_KEY",
36
- "description": "API key from openalex.org (free).",
36
+ "description": "OpenAlex API key or mailto email \u2014 optional. Without: anonymous rate limits. With: polite pool access.",
37
37
  "format": "string",
38
- "isRequired": true
38
+ "isRequired": false
39
39
  },
40
40
  {
41
41
  "name": "OPENALEX_BASE_URL",
@@ -61,7 +61,7 @@
61
61
  "registryBaseUrl": "https://registry.npmjs.org",
62
62
  "identifier": "@cyanheads/openalex-mcp-server",
63
63
  "runtimeHint": "node",
64
- "version": "0.6.12",
64
+ "version": "0.6.13",
65
65
  "packageArguments": [
66
66
  {
67
67
  "type": "positional",
@@ -75,9 +75,9 @@
75
75
  "environmentVariables": [
76
76
  {
77
77
  "name": "OPENALEX_API_KEY",
78
- "description": "API key from openalex.org (free).",
78
+ "description": "OpenAlex API key or mailto email \u2014 optional. Without: anonymous rate limits. With: polite pool access.",
79
79
  "format": "string",
80
- "isRequired": true
80
+ "isRequired": false
81
81
  },
82
82
  {
83
83
  "name": "OPENALEX_BASE_URL",