@cyanheads/nist-nvd-mcp-server 0.2.0 → 0.3.0

package/AGENTS.md

@@ -1,10 +1,10 @@
 # Developer Protocol
 
 **Server:** nist-nvd-mcp-server
-**Version:** 0.2.0
-**Framework:** [@cyanheads/mcp-ts-core](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) `^0.11.0`
+**Version:** 0.3.0
+**Framework:** [@cyanheads/mcp-ts-core](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) `^0.12.3`
 **Engines:** Bun ≥1.3.0, Node ≥24.0.0
-**MCP SDK:** `@modelcontextprotocol/sdk` ^1.29.0
+**MCP SDK:** `@modelcontextprotocol/server` ^2.0.0
 **Zod:** ^4.4.3
 
 > **Read the framework docs first:** `node_modules/@cyanheads/mcp-ts-core/CLAUDE.md` contains the full API reference — builders, Context, error codes, exports, patterns. This file covers server-specific conventions only.
@@ -35,7 +35,7 @@ Tailor suggestions to what's actually missing or stale — don't recite the full
 - **Logic throws, framework catches.** Tool/resource handlers are pure — throw on failure, no `try/catch`. Plain `Error` is fine; the framework catches, classifies, and formats. Use error factories (`notFound()`, `validationError()`, etc.) when the error code matters.
 - **Use `ctx.log`** for request-scoped logging. No `console` calls.
 - **Use `ctx.state`** for tenant-scoped storage. Never access persistence directly.
-- **Check `ctx.elicit`** for presence before calling.
+- **Need input the caller didn't supply?** `return ctx.requestInput(...)` and read `ctx.inputs` when the handler is re-entered. Never `await` for user input mid-handler.
 - **Secrets in env vars only** — never hardcoded.
 - **Close the loop on issues.** When implementing work tracked by a GitHub issue, comment on the issue with what landed and close it. Do both — a comment without a close leaves stale issues open; a close without a comment leaves no record of what shipped. The comment is for future readers — state the concrete changes, not the conversation that produced them.
 
@@ -158,6 +158,23 @@ export function getServerConfig() {
 
 `parseEnvConfig` maps Zod schema paths → env var names so errors name the variable (`MY_API_KEY`) not the path (`apiKey`). Throws `ConfigurationError`, which the framework prints as a clean startup banner.
 
+For env booleans use `z.stringbool()`, never `z.coerce.boolean()` — `Boolean("false")` is `true`, so a coerced flag can't be disabled through the environment. `z.stringbool()` parses `true/false/1/0/yes/no/on/off` and rejects anything else, so `=false` actually disables.
+
+### Server identity and instructions
+
+`createApp()` accepts optional identity fields forwarded to the SDK's `initialize` response and the server manifest (`/.well-known/mcp.json`):
+
+```ts
+await createApp({
+  name: 'nist-nvd-mcp-server',
+  title: 'nist-nvd-mcp-server',                 // human-readable display name
+  websiteUrl: 'https://github.com/cyanheads/nist-nvd-mcp-server',
+  instructions: 'Use nvd_search_cpes to resolve a product to its CPE name before auditing it.',
+});
+```
+
+`instructions` is optional server-level orientation, sent on every `initialize` as session-level context. Use it for deployment guidance (connection aliases, regional notes, scope hints) instead of repeating the same context across tool descriptions. Client adoption is uneven, but there's no downside when set.
+
 ---
 
 ## Context
@@ -166,13 +183,13 @@ Handlers receive a unified `ctx` object. Key properties:
 
 | Property | Description |
 |:---------|:------------|
-| `ctx.log` | Request-scoped logger — `.debug()`, `.info()`, `.notice()`, `.warning()`, `.error()`. Auto-correlates requestId, traceId, tenantId. |
+| `ctx.log` | Request-scoped logger — `.debug()`, `.info()`, `.notice()`, `.warning()`, `.error()`. Auto-correlates requestId, traceId, tenantId. Dual-sink: Pino **and** `notifications/message` to the client, so treat it as client-visible. |
 | `ctx.state` | Tenant-scoped KV — `.get(key)`, `.set(key, value, { ttl? })`, `.delete(key)`, `.getMany(keys)`, `.list(prefix, { cursor, limit })`. Accepts any serializable value. |
-| `ctx.elicit` | Ask user for structured input — form call `(message, schema)` or `.url(message, url)` for an external link. **Check for presence first:** `if (ctx.elicit) { ... }` |
+| `ctx.requestInput` | Suspend and ask the caller for more input — `return ctx.requestInput({ inputRequests: { key: inputRequired.elicit({ message, requestedSchema }) } })`. Never returns; the handler is re-entered with the answers. Always present. |
+| `ctx.inputs` | Reader over a retried request's responses — `.accepted(key, schema)`, `.view(key)`, `.state()`, `.dropped`. Empty on the first round. |
 | `ctx.enrich` | Success-path agent context (empty-result notices, query echo, pagination totals) — `ctx.enrich(...)` or `.notice()` / `.total()` / `.echo()` / `.truncated()`. Reaches `structuredContent` and `content[]`; lands only when the definition declares an `enrichment` block (no-op otherwise). |
 | `ctx.content` | Non-text content blocks — `.image(data, mimeType)`, `.audio(data, mimeType)`, or `ctx.content(block)` for a raw block. Prepended to `content[]` after `format()`; never enters `structuredContent`. |
 | `ctx.signal` | `AbortSignal` for cancellation. Forwarded to NVD HTTP requests. |
-| `ctx.progress` | Task progress (present when `task: true`) — `.setTotal(n)`, `.increment()`, `.update(message)`. |
 | `ctx.requestId` | Unique request ID. |
 | `ctx.tenantId` | Tenant ID from JWT; `'default'` for stdio or HTTP with auth off. |
 
@@ -182,7 +199,7 @@ Handlers receive a unified `ctx` object. Key properties:
 
 Handlers throw — the framework catches, classifies, and formats.
 
-**Recommended: typed error contract.** Declare `errors: [{ reason, code, when, recovery, retryable? }]` on `tool()` / `resource()` to receive `ctx.fail(reason, …)` typed against the reason union. TypeScript catches typos at compile time, `data.reason` is auto-populated for observability, linter enforces conformance against the handler body. `recovery` is required descriptive metadata for the agent's next move (≥ 5 words, lint-validated); for the wire `data.recovery.hint` (mirrored into `content[]` text), pass explicitly at the throw site when dynamic context matters: `ctx.fail('reason', msg, { recovery: { hint: '...' } })`. Baseline codes (`InternalError`, `ServiceUnavailable`, `Timeout`, `ValidationError`, `SerializationError`) bubble freely and don't need declaring.
+**Recommended: typed error contract.** Declare `errors: [{ reason, code, when, recovery, retryable? }]` on `tool()` / `resource()` to receive `ctx.fail(reason, …)` typed against the reason union. TypeScript catches typos at compile time, `data.reason` is auto-populated for observability, linter enforces conformance against the handler body. `recovery` is required (≥ 5 words, lint-validated) — the single source of truth for the agent's next move. Pass `ctx.recoveryFor('reason')` as the throw's data to put it on the wire (`data.recovery.hint`, mirrored into `content[]` text); override with an explicit `{ recovery: { hint: '...' } }` when dynamic runtime context matters. Baseline codes (`InternalError`, `ServiceUnavailable`, `Timeout`, `ValidationError`, `SerializationError`) bubble freely and don't need declaring.
 
 ```ts
 import { JsonRpcErrorCode } from '@cyanheads/mcp-ts-core/errors';
@@ -194,7 +211,7 @@ errors: [
 ],
 async handler(input, ctx) {
   const item = await db.find(input.id);
-  if (!item) throw ctx.fail('no_match', `No item ${input.id}`);
+  if (!item) throw ctx.fail('no_match', `No item ${input.id}`, ctx.recoveryFor('no_match'));
   return item;
 }
 ```
@@ -272,7 +289,7 @@ src/
 
 ## Skills
 
-Skills are modular instructions in `skills/` at the project root. Read them directly when a task matches — e.g., `skills/add-tool/SKILL.md` when adding a tool.
+Skills are modular instructions in `skills/` at the project root. Read them directly when a task matches — e.g., `skills/add-tool/SKILL.md` when adding a tool. `bun run list-skills` prints the full registry.
 
 **Agent skill directory:** Copy skills into the directory your agent discovers (Claude Code: `.claude/skills/`, others: equivalent). Skills then load as context without referencing `skills/` paths. After framework updates, run the `maintenance` skill — Phase B re-syncs the agent directory.
 
@@ -303,7 +320,7 @@ Available skills:
 | `api-auth` | Auth modes, scopes, JWT/OAuth |
 | `api-canvas` | DataCanvas: register tabular data, run SQL, export, plus the `spillover()` helper for big result sets — Tier 3 opt-in |
 | `api-config` | AppConfig, parseConfig, env vars |
-| `api-context` | Context interface, logger, state, progress |
+| `api-context` | Context interface, RequestContext, logger, state, multi-round-trip input |
 | `api-errors` | McpError, JsonRpcErrorCode, error patterns |
 | `api-linter` | Definition linter rule catalog — invoked by `bun run lint:mcp` and `devcheck` |
 | `api-mirror` | MirrorService: persistent self-refreshing local mirror (embedded SQLite + FTS5) of a bulk upstream dataset — Tier 3 opt-in |
@@ -346,7 +363,7 @@ When you complete a skill's checklist, check the boxes and add a completion time
 
 ## Bundling
 
-`npm run bundle` produces a `.mcpb` extension bundle for one-click install in Claude Desktop. MCPB is stdio-only — HTTP and Cloudflare Workers deployments are unaffected. Consumers who don't need it can delete `manifest.json` and `.mcpbignore`; `lint:packaging` skips cleanly.
+`npm run bundle` produces a `.mcpb` extension bundle for one-click install in Claude Desktop. The pack step is followed by `scripts/clean-mcpb.ts`, which prunes dev dependencies (`mcpb clean`) and strips two classes of `node_modules/**` content that root-anchored `.mcpbignore` patterns cannot reach: dependency-shipped agent docs (`skills/`, `.claude/`, `.agents/`, `SKILL.md`) and platform-specific native bindings, which would otherwise lock the bundle to the platform it was packed on. MCPB is stdio-only — HTTP and Cloudflare Workers deployments are unaffected. Consumers who don't need it can delete `manifest.json` and `.mcpbignore`; `lint:packaging` skips cleanly.
 
 **Adding an env var requires both files:** `server.json` (registry discovery, `environmentVariables[]`) and `manifest.json` (bundle install UX, `mcp_config.env` + `user_config`). `lint:packaging` (run by `devcheck`) verifies the env var names match.
 
@@ -364,14 +381,14 @@ Each per-version file opens with YAML frontmatter:
 ---
 summary: "One-line headline, ≤350 chars"  # required — powers the rollup index
 breaking: false                            # optional — true flags breaking changes
-security: false                            # optional — true flags security fixes
+security: false                            # optional — true ONLY for a source-code security fix, never a dependency CVE bump
 ---
 
 # 0.1.0 — YYYY-MM-DD
 ...
 ```
 
-`breaking: true` renders a `· ⚠️ Breaking` badge — use it when consumers must update code on upgrade (signature changes, removed APIs, config renames). `security: true` renders a `· 🛡️ Security` badge and pairs with a `## Security` body section. When both are set, badges render `· ⚠️ Breaking · 🛡️ Security`.
+`breaking: true` renders a `· ⚠️ Breaking` badge — use it when consumers must update code on upgrade (signature changes, removed APIs, config renames). `security: true` renders a `· 🛡️ Security` badge and pairs with a `## Security` body section — set it only for a security fix in this server's *own source code*, never for a routine dependency or transitive CVE bump (record those under `## Dependencies`). When both are set, badges render `· ⚠️ Breaking · 🛡️ Security`.
 
 `agent-notes` is an optional free-form field for maintenance agents processing the release downstream. Content here won't appear in the rendered CHANGELOG — it's consumed by agents running the `maintenance` skill. Use it for adoption instructions that don't fit the human-facing sections: new files to create, fields to populate, one-time migration steps. Omit entirely when there's nothing to say.
 

package/CLAUDE.md

@@ -1,10 +1,10 @@
 # Developer Protocol
 
 **Server:** nist-nvd-mcp-server
-**Version:** 0.2.0
-**Framework:** [@cyanheads/mcp-ts-core](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) `^0.11.0`
+**Version:** 0.3.0
+**Framework:** [@cyanheads/mcp-ts-core](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) `^0.12.3`
 **Engines:** Bun ≥1.3.0, Node ≥24.0.0
-**MCP SDK:** `@modelcontextprotocol/sdk` ^1.29.0
+**MCP SDK:** `@modelcontextprotocol/server` ^2.0.0
 **Zod:** ^4.4.3
 
 > **Read the framework docs first:** `node_modules/@cyanheads/mcp-ts-core/CLAUDE.md` contains the full API reference — builders, Context, error codes, exports, patterns. This file covers server-specific conventions only.
@@ -35,7 +35,7 @@ Tailor suggestions to what's actually missing or stale — don't recite the full
 - **Logic throws, framework catches.** Tool/resource handlers are pure — throw on failure, no `try/catch`. Plain `Error` is fine; the framework catches, classifies, and formats. Use error factories (`notFound()`, `validationError()`, etc.) when the error code matters.
 - **Use `ctx.log`** for request-scoped logging. No `console` calls.
 - **Use `ctx.state`** for tenant-scoped storage. Never access persistence directly.
-- **Check `ctx.elicit`** for presence before calling.
+- **Need input the caller didn't supply?** `return ctx.requestInput(...)` and read `ctx.inputs` when the handler is re-entered. Never `await` for user input mid-handler.
 - **Secrets in env vars only** — never hardcoded.
 - **Close the loop on issues.** When implementing work tracked by a GitHub issue, comment on the issue with what landed and close it. Do both — a comment without a close leaves stale issues open; a close without a comment leaves no record of what shipped. The comment is for future readers — state the concrete changes, not the conversation that produced them.
 
@@ -158,6 +158,23 @@ export function getServerConfig() {
 
 `parseEnvConfig` maps Zod schema paths → env var names so errors name the variable (`MY_API_KEY`) not the path (`apiKey`). Throws `ConfigurationError`, which the framework prints as a clean startup banner.
 
+For env booleans use `z.stringbool()`, never `z.coerce.boolean()` — `Boolean("false")` is `true`, so a coerced flag can't be disabled through the environment. `z.stringbool()` parses `true/false/1/0/yes/no/on/off` and rejects anything else, so `=false` actually disables.
+
+### Server identity and instructions
+
+`createApp()` accepts optional identity fields forwarded to the SDK's `initialize` response and the server manifest (`/.well-known/mcp.json`):
+
+```ts
+await createApp({
+  name: 'nist-nvd-mcp-server',
+  title: 'nist-nvd-mcp-server',                 // human-readable display name
+  websiteUrl: 'https://github.com/cyanheads/nist-nvd-mcp-server',
+  instructions: 'Use nvd_search_cpes to resolve a product to its CPE name before auditing it.',
+});
+```
+
+`instructions` is optional server-level orientation, sent on every `initialize` as session-level context. Use it for deployment guidance (connection aliases, regional notes, scope hints) instead of repeating the same context across tool descriptions. Client adoption is uneven, but there's no downside when set.
+
 ---
 
 ## Context
@@ -166,13 +183,13 @@ Handlers receive a unified `ctx` object. Key properties:
 
 | Property | Description |
 |:---------|:------------|
-| `ctx.log` | Request-scoped logger — `.debug()`, `.info()`, `.notice()`, `.warning()`, `.error()`. Auto-correlates requestId, traceId, tenantId. |
+| `ctx.log` | Request-scoped logger — `.debug()`, `.info()`, `.notice()`, `.warning()`, `.error()`. Auto-correlates requestId, traceId, tenantId. Dual-sink: Pino **and** `notifications/message` to the client, so treat it as client-visible. |
 | `ctx.state` | Tenant-scoped KV — `.get(key)`, `.set(key, value, { ttl? })`, `.delete(key)`, `.getMany(keys)`, `.list(prefix, { cursor, limit })`. Accepts any serializable value. |
-| `ctx.elicit` | Ask user for structured input — form call `(message, schema)` or `.url(message, url)` for an external link. **Check for presence first:** `if (ctx.elicit) { ... }` |
+| `ctx.requestInput` | Suspend and ask the caller for more input — `return ctx.requestInput({ inputRequests: { key: inputRequired.elicit({ message, requestedSchema }) } })`. Never returns; the handler is re-entered with the answers. Always present. |
+| `ctx.inputs` | Reader over a retried request's responses — `.accepted(key, schema)`, `.view(key)`, `.state()`, `.dropped`. Empty on the first round. |
 | `ctx.enrich` | Success-path agent context (empty-result notices, query echo, pagination totals) — `ctx.enrich(...)` or `.notice()` / `.total()` / `.echo()` / `.truncated()`. Reaches `structuredContent` and `content[]`; lands only when the definition declares an `enrichment` block (no-op otherwise). |
 | `ctx.content` | Non-text content blocks — `.image(data, mimeType)`, `.audio(data, mimeType)`, or `ctx.content(block)` for a raw block. Prepended to `content[]` after `format()`; never enters `structuredContent`. |
 | `ctx.signal` | `AbortSignal` for cancellation. Forwarded to NVD HTTP requests. |
-| `ctx.progress` | Task progress (present when `task: true`) — `.setTotal(n)`, `.increment()`, `.update(message)`. |
 | `ctx.requestId` | Unique request ID. |
 | `ctx.tenantId` | Tenant ID from JWT; `'default'` for stdio or HTTP with auth off. |
 
@@ -182,7 +199,7 @@ Handlers receive a unified `ctx` object. Key properties:
 
 Handlers throw — the framework catches, classifies, and formats.
 
-**Recommended: typed error contract.** Declare `errors: [{ reason, code, when, recovery, retryable? }]` on `tool()` / `resource()` to receive `ctx.fail(reason, …)` typed against the reason union. TypeScript catches typos at compile time, `data.reason` is auto-populated for observability, linter enforces conformance against the handler body. `recovery` is required descriptive metadata for the agent's next move (≥ 5 words, lint-validated); for the wire `data.recovery.hint` (mirrored into `content[]` text), pass explicitly at the throw site when dynamic context matters: `ctx.fail('reason', msg, { recovery: { hint: '...' } })`. Baseline codes (`InternalError`, `ServiceUnavailable`, `Timeout`, `ValidationError`, `SerializationError`) bubble freely and don't need declaring.
+**Recommended: typed error contract.** Declare `errors: [{ reason, code, when, recovery, retryable? }]` on `tool()` / `resource()` to receive `ctx.fail(reason, …)` typed against the reason union. TypeScript catches typos at compile time, `data.reason` is auto-populated for observability, linter enforces conformance against the handler body. `recovery` is required (≥ 5 words, lint-validated) — the single source of truth for the agent's next move. Pass `ctx.recoveryFor('reason')` as the throw's data to put it on the wire (`data.recovery.hint`, mirrored into `content[]` text); override with an explicit `{ recovery: { hint: '...' } }` when dynamic runtime context matters. Baseline codes (`InternalError`, `ServiceUnavailable`, `Timeout`, `ValidationError`, `SerializationError`) bubble freely and don't need declaring.
 
 ```ts
 import { JsonRpcErrorCode } from '@cyanheads/mcp-ts-core/errors';
@@ -194,7 +211,7 @@ errors: [
 ],
 async handler(input, ctx) {
   const item = await db.find(input.id);
-  if (!item) throw ctx.fail('no_match', `No item ${input.id}`);
+  if (!item) throw ctx.fail('no_match', `No item ${input.id}`, ctx.recoveryFor('no_match'));
   return item;
 }
 ```
@@ -272,7 +289,7 @@ src/
 
 ## Skills
 
-Skills are modular instructions in `skills/` at the project root. Read them directly when a task matches — e.g., `skills/add-tool/SKILL.md` when adding a tool.
+Skills are modular instructions in `skills/` at the project root. Read them directly when a task matches — e.g., `skills/add-tool/SKILL.md` when adding a tool. `bun run list-skills` prints the full registry.
 
 **Agent skill directory:** Copy skills into the directory your agent discovers (Claude Code: `.claude/skills/`, others: equivalent). Skills then load as context without referencing `skills/` paths. After framework updates, run the `maintenance` skill — Phase B re-syncs the agent directory.
 
@@ -303,7 +320,7 @@ Available skills:
 | `api-auth` | Auth modes, scopes, JWT/OAuth |
 | `api-canvas` | DataCanvas: register tabular data, run SQL, export, plus the `spillover()` helper for big result sets — Tier 3 opt-in |
 | `api-config` | AppConfig, parseConfig, env vars |
-| `api-context` | Context interface, logger, state, progress |
+| `api-context` | Context interface, RequestContext, logger, state, multi-round-trip input |
 | `api-errors` | McpError, JsonRpcErrorCode, error patterns |
 | `api-linter` | Definition linter rule catalog — invoked by `bun run lint:mcp` and `devcheck` |
 | `api-mirror` | MirrorService: persistent self-refreshing local mirror (embedded SQLite + FTS5) of a bulk upstream dataset — Tier 3 opt-in |
@@ -346,7 +363,7 @@ When you complete a skill's checklist, check the boxes and add a completion time
 
 ## Bundling
 
-`npm run bundle` produces a `.mcpb` extension bundle for one-click install in Claude Desktop. MCPB is stdio-only — HTTP and Cloudflare Workers deployments are unaffected. Consumers who don't need it can delete `manifest.json` and `.mcpbignore`; `lint:packaging` skips cleanly.
+`npm run bundle` produces a `.mcpb` extension bundle for one-click install in Claude Desktop. The pack step is followed by `scripts/clean-mcpb.ts`, which prunes dev dependencies (`mcpb clean`) and strips two classes of `node_modules/**` content that root-anchored `.mcpbignore` patterns cannot reach: dependency-shipped agent docs (`skills/`, `.claude/`, `.agents/`, `SKILL.md`) and platform-specific native bindings, which would otherwise lock the bundle to the platform it was packed on. MCPB is stdio-only — HTTP and Cloudflare Workers deployments are unaffected. Consumers who don't need it can delete `manifest.json` and `.mcpbignore`; `lint:packaging` skips cleanly.
 
 **Adding an env var requires both files:** `server.json` (registry discovery, `environmentVariables[]`) and `manifest.json` (bundle install UX, `mcp_config.env` + `user_config`). `lint:packaging` (run by `devcheck`) verifies the env var names match.
 
@@ -364,14 +381,14 @@ Each per-version file opens with YAML frontmatter:
 ---
 summary: "One-line headline, ≤350 chars"  # required — powers the rollup index
 breaking: false                            # optional — true flags breaking changes
-security: false                            # optional — true flags security fixes
+security: false                            # optional — true ONLY for a source-code security fix, never a dependency CVE bump
 ---
 
 # 0.1.0 — YYYY-MM-DD
 ...
 ```
 
-`breaking: true` renders a `· ⚠️ Breaking` badge — use it when consumers must update code on upgrade (signature changes, removed APIs, config renames). `security: true` renders a `· 🛡️ Security` badge and pairs with a `## Security` body section. When both are set, badges render `· ⚠️ Breaking · 🛡️ Security`.
+`breaking: true` renders a `· ⚠️ Breaking` badge — use it when consumers must update code on upgrade (signature changes, removed APIs, config renames). `security: true` renders a `· 🛡️ Security` badge and pairs with a `## Security` body section — set it only for a security fix in this server's *own source code*, never for a routine dependency or transitive CVE bump (record those under `## Dependencies`). When both are set, badges render `· ⚠️ Breaking · 🛡️ Security`.
 
 `agent-notes` is an optional free-form field for maintenance agents processing the release downstream. Content here won't appear in the rendered CHANGELOG — it's consumed by agents running the `maintenance` skill. Use it for adoption instructions that don't fit the human-facing sections: new files to create, fields to populate, one-time migration steps. Omit entirely when there's nothing to say.
 

package/Dockerfile

@@ -4,7 +4,7 @@
 # This stage installs all dependencies (including dev), builds the TypeScript
 # source code into JavaScript, and prepares the production assets.
 # ==============================================================================
-FROM oven/bun:1.3.14 AS build
+FROM oven/bun:1.4.0 AS build
 
 WORKDIR /usr/src/app
 
@@ -30,7 +30,7 @@ RUN bun run build
 # application. It uses a slim base image and only includes production
 # dependencies and build artifacts.
 # ==============================================================================
-FROM oven/bun:1.3.14-slim AS production
+FROM oven/bun:1.4.0-slim AS production
 
 WORKDIR /usr/src/app
 
@@ -51,8 +51,13 @@ COPY package.json bun.lock ./
 
 # Install only production dependencies, ignoring any lifecycle scripts (like 'prepare')
 # that are not needed in the final production image.
+# `--omit=peer` drops the framework's optional peer tiers (test runner, service
+# SDKs, parsers) that Bun would otherwise auto-install. Anything this server
+# actually imports belongs in its own `dependencies`, so nothing needed at
+# runtime is lost. The OTEL step below carries the same flag — without it, that
+# install re-resolves the graph and pulls every optional peer back in.
 RUN --mount=type=cache,target=/root/.bun/install/cache \
-    bun install --production --frozen-lockfile --ignore-scripts
+    bun install --production --omit=peer --frozen-lockfile --ignore-scripts
 
 # Conditionally install OpenTelemetry optional peer dependencies (Tier 3).
 # These are not bundled by default to keep the base image lean. Enable at build time
@@ -60,7 +65,7 @@ RUN --mount=type=cache,target=/root/.bun/install/cache \
 ARG OTEL_ENABLED=true
 RUN --mount=type=cache,target=/root/.bun/install/cache \
     if [ "$OTEL_ENABLED" = "true" ]; then \
-      bun add --omit=dev --ignore-scripts @hono/otel \
+      bun add --omit=dev --omit=peer --ignore-scripts @hono/otel \
         @opentelemetry/instrumentation-http \
         @opentelemetry/exporter-metrics-otlp-http \
         @opentelemetry/exporter-trace-otlp-http \

package/README.md

@@ -7,7 +7,7 @@
 
 <div align="center">
 
-[![Version](https://img.shields.io/badge/Version-0.2.0-blue.svg?style=flat-square)](./CHANGELOG.md) [![License](https://img.shields.io/badge/License-Apache%202.0-orange.svg?style=flat-square)](./LICENSE) [![Docker](https://img.shields.io/badge/Docker-ghcr.io-2496ED?style=flat-square&logo=docker&logoColor=white)](https://github.com/users/cyanheads/packages/container/package/nist-nvd-mcp-server) [![MCP SDK](https://img.shields.io/badge/MCP%20SDK-^1.29.0-green.svg?style=flat-square)](https://modelcontextprotocol.io/) [![npm](https://img.shields.io/npm/v/@cyanheads/nist-nvd-mcp-server?style=flat-square&logo=npm&logoColor=white)](https://www.npmjs.com/package/@cyanheads/nist-nvd-mcp-server) [![TypeScript](https://img.shields.io/badge/TypeScript-^6.0.3-3178C6.svg?style=flat-square)](https://www.typescriptlang.org/) [![Bun](https://img.shields.io/badge/Bun-v1.3.14-blueviolet.svg?style=flat-square)](https://bun.sh/)
+[![Version](https://img.shields.io/badge/Version-0.3.0-blue.svg?style=flat-square)](./CHANGELOG.md) [![License](https://img.shields.io/badge/License-Apache%202.0-orange.svg?style=flat-square)](./LICENSE) [![Docker](https://img.shields.io/badge/Docker-ghcr.io-2496ED?style=flat-square&logo=docker&logoColor=white)](https://github.com/users/cyanheads/packages/container/package/nist-nvd-mcp-server) [![MCP SDK](https://img.shields.io/badge/MCP%20SDK-^2.0.0-green.svg?style=flat-square)](https://modelcontextprotocol.io/) [![npm](https://img.shields.io/npm/v/@cyanheads/nist-nvd-mcp-server?style=flat-square&logo=npm&logoColor=white)](https://www.npmjs.com/package/@cyanheads/nist-nvd-mcp-server) [![TypeScript](https://img.shields.io/badge/TypeScript-^7.0.2-3178C6.svg?style=flat-square)](https://www.typescriptlang.org/) [![Bun](https://img.shields.io/badge/Bun-v1.4.0-blueviolet.svg?style=flat-square)](https://bun.sh/)
 
 </div>
 

package/changelog/0.3.x/0.3.0.md

@@ -0,0 +1,48 @@
+---
+summary: "nvd_get_cve and nvd_audit_cpe replace their configurations output field with configurationNodes — a flat array of nodes, each tagged with the group it came from — on mcp-ts-core 0.12.3."
+breaking: true
+security: false
+agent-notes: |
+  A consumer reading `configurations` moves to `configurationNodes` and reaches
+  criteria one level shallower: `configurationNodes[].cpeMatch[]` rather than
+  `configurations[].nodes[].cpeMatch[]`. Group membership rides each node as
+  `groupIndex`, and the single `operator` splits into `groupOperator` and
+  `nodeOperator`.
+
+  Tool inputs are strict on `@cyanheads/mcp-ts-core` 0.12.x — a call carrying an
+  argument key the schema does not declare now comes back as an error naming
+  that key instead of having it stripped.
+---
+
+# 0.3.0 — 2026-08-24
+
+## Added
+
+- **`.github/CONTRIBUTING.md` and `.github/CODE_OF_CONDUCT.md`** — how to tell a server bug from a framework bug before filing, what makes a report actionable, and the project's conduct rules.
+
+## Changed
+
+- **`nvd_get_cve` and `nvd_audit_cpe` emit `configurationNodes` in place of `configurations`.** One entry per upstream node, carrying `groupIndex`, `groupOperator`, `nodeOperator`, and its own `cpeMatch[]`, so criteria sit one level shallower. Hoisting the group rather than the node is what keeps `(X1.0 OR X1.1) AND Y` distinguishable from `X1.0 AND X1.1 AND Y`.
+- **Rendered CPE match lines label the vulnerable component in both directions.** A match that is the vulnerable component reads `vulnerable component`; previously only the negative case was labelled and the affirmative one said nothing.
+- **The `Configurations:` summary line reports group, node, and match counts.** It previously reported node-group and match counts, which under the new shape would have counted nodes as groups.
+- **Tool inputs are strict.** An argument key a tool's schema does not declare is rejected by name as an error result rather than silently stripped.
+- **The advertised `outputSchema` declares the error envelope.** A client that validates `structuredContent` without checking `isError` no longer rejects an error result with `-32602`.
+- **Advertised JSON Schema is 2020-12**, not draft-07.
+- **Protocol revision 2026-07-28 is served on every HTTP endpoint**, alongside the 2025-era revisions negotiated at `initialize`.
+- **`transport.sessionMode` reports the mode the server resolved to**, never `auto`, on both the landing page and `/.well-known/mcp.json`.
+- **`ctx.log` output reaches the client** as `notifications/message`, gated by the client's `logging/setLevel`.
+- **`.env.example` sets `MCP_SESSION_MODE=stateless` explicitly**, so a source run resolves the mode the `Dockerfile` already set; the file previously documented the `stateful` default.
+- **The production Docker stage installs with `--omit=peer`** on both its `bun install` and its OpenTelemetry `bun add`, keeping the framework's optional peer tiers out of the runtime image.
+- **Repo tooling resync** — `tsconfig.json` typechecks `src/` and `tests/` under `noEmit` with emit split into `tsconfig.build.json`, `scripts/tree.ts` honors directory-only gitignore patterns, and the shipped `skills/` are re-synced to the 0.12.x framework.
+
+## Dependencies
+
+- `@cyanheads/mcp-ts-core` `^0.11.0` → `^0.12.3`
+- `@biomejs/biome` `^2.5.6` → `^2.5.10`
+- `@types/node` `^26.1.2` → `^26.2.0`
+- `tsc-alias` `^1.9.1` → `^1.9.2`
+- `typescript` `^6.0.3` → `^7.0.2`
+- `vitest` `^4.1.10` → `^4.1.11`
+- `packageManager` `bun@1.3.14` → `bun@1.4.0`, matching the pins in both `Dockerfile` stages. `engines.bun` stays `>=1.3.0`.
+- The framework's MCP SDK moves from `@modelcontextprotocol/sdk` `^1.29.0` to `@modelcontextprotocol/server` `^2.0.0`; this server imports neither directly.
+- The framework gap also carries upstream security hardening: `rejectPrivateIPs` now range-checks the full non-global IP surface instead of pattern-matching prefixes, and credentials, query strings, and fragments are stripped from resource URIs before they reach logs or telemetry.

package/changelog/template.md

@@ -4,10 +4,11 @@
 # to author a new release. Set that file's H1 to `# <version> — YYYY-MM-DD`
 # with a concrete date.
 
-# Required. One-line GitHub Release-style headline. 350 character cap.
-# Default short and scannable. Don't pad, don't stitch unrelated changes with
-# semicolons — pick the headline. Quotes required: unquoted YAML treats `: `
-# inside the value as a key separator and fails GitHub's strict parser.
+# Required. One-line GitHub Release-style headline. 350 character cap — a
+# ceiling, not a target. Default short and scannable. Don't pad, don't stitch
+# unrelated changes with commas/semicolons into an inventory — pick the
+# headline, like a tag's theme line. Quotes required: unquoted YAML treats
+# `: ` inside the value as a key separator and fails GitHub's strict parser.
 summary: ""
 
 # Set `true` when consumers must change code to upgrade: API removals,
@@ -24,9 +25,10 @@ security: false
 
 # Optional free-form notes for maintenance agents processing this release.
 # Not rendered in CHANGELOG — consumed by agents running `maintenance` on
-# downstream servers. Use for adoption instructions that don't fit the
-# human-facing sections: new files to create, fields to populate, one-time
-# migration steps. Omit the field entirely when there's nothing to say.
+# downstream servers. ADOPTION STEPS ONLY — new files to create, fields to
+# populate, one-time migration steps. Never a second rendering of the body:
+# if a body bullet already says it, name the bullet's symbol instead of
+# re-explaining. Omit the field entirely when there's nothing to say.
 # agent-notes: |
 #   <instructions for downstream maintenance agents>
 ---
@@ -41,17 +43,54 @@ security: false
   each bullet with the symbol or concept name in **bold** so they can skip
   what's irrelevant and zoom in on what's not.
 
-  Tone: terse, fact-dense, not verbose. Default to one sentence per bullet —
-  name the symbol, state what changed, stop. Use a second sentence only when
-  it carries weight. If a bullet feels long, it is.
-
-  Cut: mechanism walkthroughs (those belong in JSDoc, CLAUDE.md/AGENTS.md, or the
-  relevant skill), ceremonial framings ("This release introduces…",
-  backwards-compat paragraphs), file-by-file test enumerations, internal
-  implementation notes. Prefer code/symbol names over English re-explanations.
+  Tone: terse, fact-dense, not verbose. Bullet shape: **symbol** + what
+  changed + at most one consumer-facing caveat. One sentence by default, two
+  when the second carries weight — a bullet past ~40 words or three sentences
+  is wrong. The depth lives one hop away: the linked issue carries the why,
+  the commit diff carries the how. The changelog names what changed and what
+  a consumer does about it; a reader who wants mechanism opens the link.
+
+  Model length on THIS guide, never on the previous entry — entries modeled
+  on entries compound.
+
+  Cut (each has shipped as a wall of text; these are the cruft):
+  - History/justification narration — how the bug worked, why the old
+    behavior was wrong. One short clause at most; the issue carries the story.
+  - Design-rationale defense — "chosen over Y because…", "guarding the
+    getter is not enough…". That is the author arguing with a reviewer;
+    reviewers read the PR, not the changelog.
+  - Defensive unchanged-clauses — "X is unchanged", "byte-identical to
+    <prev>". Keep one only where its absence would cause a real misread,
+    as a short parenthetical.
+  - Edge-case inventories — marker lists, not-flagged lists, escape tables.
+    Tests and the issue carry those.
+  - Mechanism walkthroughs (JSDoc, CLAUDE.md/AGENTS.md, or the relevant
+    skill own those), ceremonial framings ("This release introduces…"),
+    backwards-compat paragraphs, file-by-file test enumerations. Prefer
+    code/symbol names over English re-explanations.
+
+  Verified ≠ included: the every-claim-verified-from-the-diff rule bounds
+  the TRUTH of what you write, never the AMOUNT.
+
+  Example — same fact, right size:
+
+    TOO LONG: **`fetchWithTimeout`'s `timeoutMs` bounds the whole exchange**
+    (#341). `fetch` resolves once headers arrive and the deadline was
+    cleared as the helper returned, so a peer that answered promptly and
+    then stalled the stream held the request open indefinitely. A 2xx
+    carrying a body now comes back as a passthrough wrapper that disarms
+    the deadline when the body closes, errors, or is cancelled; …
+    [+90 more words of mechanism and edge cases]
+
+    RIGHT: **`fetchWithTimeout`'s `timeoutMs` now bounds the whole
+    exchange, not just the headers** (#341). A stalled body aborts with
+    the same `Timeout` error; the returned `Response` is a wrapper, so
+    identity assertions (`toBe(response)`) no longer hold.
 
   Narrative intro: skip by default. Add one short sentence only when the
-  release theme genuinely needs framing the bullets can't carry.
+  release theme genuinely needs framing the bullets can't carry. When many
+  bullets share one upgrade consequence, state it ONCE — intro line or
+  agent-notes — never per bullet.
 
   Sections: Keep a Changelog order — Added, Changed, Deprecated, Removed,
   Fixed, Security. Include only sections with entries; delete the rest

package/dist/mcp-server/tools/definitions/nvd-audit-cpe.tool.d.ts

@@ -9,19 +9,19 @@ export declare const nvdAuditCpe: import("@cyanheads/mcp-ts-core").ToolDefinitio
     virtualMatchString: z.ZodOptional<z.ZodString>;
     versionStart: z.ZodOptional<z.ZodString>;
     versionStartType: z.ZodDefault<z.ZodEnum<{
-        including: "including";
         excluding: "excluding";
+        including: "including";
     }>>;
     versionEnd: z.ZodOptional<z.ZodString>;
     versionEndType: z.ZodDefault<z.ZodEnum<{
-        including: "including";
         excluding: "excluding";
+        including: "including";
     }>>;
     severityMin: z.ZodOptional<z.ZodEnum<{
+        CRITICAL: "CRITICAL";
+        HIGH: "HIGH";
         LOW: "LOW";
         MEDIUM: "MEDIUM";
-        HIGH: "HIGH";
-        CRITICAL: "CRITICAL";
     }>>;
     allLanguages: z.ZodDefault<z.ZodBoolean>;
     limit: z.ZodDefault<z.ZodNumber>;
@@ -52,18 +52,17 @@ export declare const nvdAuditCpe: import("@cyanheads/mcp-ts-core").ToolDefinitio
             source: z.ZodString;
             cweIds: z.ZodArray<z.ZodString>;
         }, z.core.$strip>>;
-        configurations: z.ZodArray<z.ZodObject<{
-            operator: z.ZodOptional<z.ZodString>;
-            nodes: z.ZodArray<z.ZodObject<{
-                operator: z.ZodOptional<z.ZodString>;
-                cpeMatch: z.ZodArray<z.ZodObject<{
-                    vulnerable: z.ZodBoolean;
-                    criteria: z.ZodString;
-                    versionStartIncluding: z.ZodOptional<z.ZodString>;
-                    versionStartExcluding: z.ZodOptional<z.ZodString>;
-                    versionEndIncluding: z.ZodOptional<z.ZodString>;
-                    versionEndExcluding: z.ZodOptional<z.ZodString>;
-                }, z.core.$strip>>;
+        configurationNodes: z.ZodArray<z.ZodObject<{
+            groupIndex: z.ZodNumber;
+            groupOperator: z.ZodOptional<z.ZodString>;
+            nodeOperator: z.ZodOptional<z.ZodString>;
+            cpeMatch: z.ZodArray<z.ZodObject<{
+                vulnerable: z.ZodBoolean;
+                criteria: z.ZodString;
+                versionStartIncluding: z.ZodOptional<z.ZodString>;
+                versionStartExcluding: z.ZodOptional<z.ZodString>;
+                versionEndIncluding: z.ZodOptional<z.ZodString>;
+                versionEndExcluding: z.ZodOptional<z.ZodString>;
             }, z.core.$strip>>;
         }, z.core.$strip>>;
         references: z.ZodOptional<z.ZodArray<z.ZodObject<{

package/dist/mcp-server/tools/definitions/nvd-audit-cpe.tool.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"nvd-audit-cpe.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/nvd-audit-cpe.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAUjE,eAAO,MAAM,WAAW;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EAwVtB,CAAC"}
+{"version":3,"file":"nvd-audit-cpe.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/nvd-audit-cpe.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAcjE,eAAO,MAAM,WAAW;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EAsVtB,CAAC"}

package/dist/mcp-server/tools/definitions/nvd-audit-cpe.tool.js

@@ -4,7 +4,7 @@
  */
 import { tool, z } from '@cyanheads/mcp-ts-core';
 import { JsonRpcErrorCode } from '@cyanheads/mcp-ts-core/errors';
-import { CPE_MATCH_CAP, flattenCpeMatches } from '../../../mcp-server/tools/formatting/cpe-match.js';
+import { CPE_MATCH_CAP, flattenCpeMatches, summarizeCpeNodes, } from '../../../mcp-server/tools/formatting/cpe-match.js';
 import { CveRecordSchema } from '../../../mcp-server/tools/schemas/full-cve.js';
 import { getNvdCveService } from '../../../services/nvd-cve/nvd-cve-service.js';
 const CPE_V23_REGEX = /^cpe:2\.3:/i;
@@ -251,9 +251,9 @@ export const nvdAuditCpe = tool('nvd_audit_cpe', {
                 lines.push(`  - Action Due: ${cve.cisaKev.actionDueDate}`);
                 lines.push(`  - Required Action: ${cve.cisaKev.requiredAction}`);
             }
-            if (cve.configurations && cve.configurations.length > 0) {
-                const matches = flattenCpeMatches(cve.configurations);
-                lines.push(`**Configurations:** ${cve.configurations.length} node group(s), ${matches.length} CPE match(es)`);
+            if (cve.configurationNodes && cve.configurationNodes.length > 0) {
+                const matches = flattenCpeMatches(cve.configurationNodes);
+                lines.push(`**Configurations:** ${summarizeCpeNodes(cve.configurationNodes)}`);
                 for (const match of matches.slice(0, CPE_MATCH_CAP))
                     lines.push(`  - ${match}`);
                 if (matches.length > CPE_MATCH_CAP) {

package/dist/mcp-server/tools/definitions/nvd-audit-cpe.tool.js.map

@@ -1 +1 @@
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package/dist/mcp-server/tools/definitions/nvd-get-cve-history.tool.d.ts

@@ -9,8 +9,8 @@ export declare const nvdGetCveHistory: import("@cyanheads/mcp-ts-core").ToolDefi
     limit: z.ZodDefault<z.ZodNumber>;
     offset: z.ZodDefault<z.ZodNumber>;
     order: z.ZodDefault<z.ZodEnum<{
-        oldest: "oldest";
         newest: "newest";
+        oldest: "oldest";
     }>>;
 }, z.core.$strip>, z.ZodObject<{
     cveId: z.ZodString;
@@ -40,8 +40,8 @@ export declare const nvdGetCveHistory: import("@cyanheads/mcp-ts-core").ToolDefi
     readonly returned: z.ZodNumber;
     readonly offset: z.ZodNumber;
     readonly order: z.ZodEnum<{
-        oldest: "oldest";
         newest: "newest";
+        oldest: "oldest";
     }>;
     readonly notice: z.ZodOptional<z.ZodString>;
 }>;