@cyanheads/gbif-biodiversity-mcp-server 0.3.0 → 0.4.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/CLAUDE.md +2 -2
- package/README.md +1 -1
- package/dist/mcp-server/tools/definitions/gbif-occurrence-facets.tool.d.ts +1 -0
- package/dist/mcp-server/tools/definitions/gbif-occurrence-facets.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/gbif-occurrence-facets.tool.js +6 -1
- package/dist/mcp-server/tools/definitions/gbif-occurrence-facets.tool.js.map +1 -1
- package/dist/mcp-server/tools/definitions/gbif-search-occurrences.tool.d.ts +1 -0
- package/dist/mcp-server/tools/definitions/gbif-search-occurrences.tool.d.ts.map +1 -1
- package/dist/mcp-server/tools/definitions/gbif-search-occurrences.tool.js +7 -2
- package/dist/mcp-server/tools/definitions/gbif-search-occurrences.tool.js.map +1 -1
- package/dist/services/gbif/gbif-service.d.ts +1 -0
- package/dist/services/gbif/gbif-service.d.ts.map +1 -1
- package/dist/services/gbif/gbif-service.js +2 -0
- package/dist/services/gbif/gbif-service.js.map +1 -1
- package/package.json +2 -3
- package/server.json +3 -3
package/CLAUDE.md
CHANGED
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@@ -1,8 +1,8 @@
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# Developer Protocol
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**Server:** @cyanheads/gbif-biodiversity-mcp-server
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**Version:** 0.
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**Framework:** [@cyanheads/mcp-ts-core](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) `^0.10.
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**Version:** 0.4.0
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**Framework:** [@cyanheads/mcp-ts-core](https://www.npmjs.com/package/@cyanheads/mcp-ts-core) `^0.10.10`
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**Engines:** Bun ≥1.3.0, Node ≥24.0.0
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**MCP SDK:** `@modelcontextprotocol/sdk` ^1.29.0
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**Zod:** ^4.4.3
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package/README.md
CHANGED
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@@ -7,7 +7,7 @@
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<div align="center">
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[](./CHANGELOG.md) [](./LICENSE) [](https://github.com/users/cyanheads/packages/container/package/gbif-biodiversity-mcp-server) [](https://modelcontextprotocol.io/) [](https://www.npmjs.com/package/@cyanheads/gbif-biodiversity-mcp-server) [](https://www.typescriptlang.org/) [](https://bun.sh/)
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</div>
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@@ -34,6 +34,7 @@ export declare const gbifOccurrenceFacets: import("@cyanheads/mcp-ts-core").Tool
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LITERATURE: "LITERATURE";
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}>>;
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geometry: z.ZodOptional<z.ZodString>;
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datasetKey: z.ZodOptional<z.ZodString>;
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facetLimit: z.ZodDefault<z.ZodNumber>;
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}, z.core.$strip>, z.ZodObject<{
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facet: z.ZodString;
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@@ -1 +1 @@
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{"version":3,"file":"gbif-occurrence-facets.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/gbif-occurrence-facets.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AA+BjD,eAAO,MAAM,oBAAoB
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{"version":3,"file":"gbif-occurrence-facets.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/gbif-occurrence-facets.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AA+BjD,eAAO,MAAM,oBAAoB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EA6H/B,CAAC"}
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@@ -36,7 +36,7 @@ export const gbifOccurrenceFacets = tool('gbif_occurrence_facets', {
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'KINGDOM_KEY, etc.). Returns the top-N facet values ranked by count — no record payloads returned. ' +
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'Core tool for distribution analysis and trend queries: "which countries have the most records ' +
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'for this species?", "how has observation volume changed since 2010?". ' +
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'Scope the aggregation with taxonKey, country, year, geometry, or
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'Scope the aggregation with taxonKey, country, year, geometry, basisOfRecord, or datasetKey filters.',
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annotations: { readOnlyHint: true, idempotentHint: true, openWorldHint: false },
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input: z.object({
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facet: z
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@@ -62,6 +62,10 @@ export const gbifOccurrenceFacets = tool('gbif_occurrence_facets', {
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.string()
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.optional()
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.describe('WKT polygon to scope the aggregation to a geographic area (e.g., POLYGON((8 47, 9 47, 9 48, 8 48, 8 47))). Coordinates are longitude latitude.'),
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datasetKey: z
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.string()
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.optional()
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.describe('Scope the aggregation to a single dataset by its GBIF dataset UUID. Obtain one from gbif_search_datasets, gbif_get_dataset, a DATASET_KEY facet, or the datasetKey field on an occurrence record.'),
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facetLimit: z
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.number()
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.min(1)
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@@ -98,6 +102,7 @@ export const gbifOccurrenceFacets = tool('gbif_occurrence_facets', {
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...(input.year?.trim() && { year: input.year }),
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...(input.basisOfRecord && { basisOfRecord: input.basisOfRecord }),
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...(input.geometry?.trim() && { geometry: input.geometry }),
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...(input.datasetKey?.trim() && { datasetKey: input.datasetKey }),
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facetLimit: input.facetLimit,
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}, ctx);
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const facetData = raw.facets?.find((f) => f.field?.toUpperCase() === input.facet.toUpperCase());
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{"version":3,"file":"gbif-occurrence-facets.tool.js","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/gbif-occurrence-facets.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAE,IAAI,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,cAAc,EAAE,MAAM,iCAAiC,CAAC;AAEjE,MAAM,sBAAsB,GAAG;IAC7B,mBAAmB;IACnB,qBAAqB;IACrB,oBAAoB;IACpB,iBAAiB;IACjB,iBAAiB;IACjB,mBAAmB;IACnB,YAAY;IACZ,YAAY;CACJ,CAAC;AAEX,MAAM,YAAY,GAAG;IACnB,iBAAiB;IACjB,SAAS;IACT,gBAAgB;IAChB,MAAM;IACN,aAAa;IACb,aAAa;IACb,YAAY;IACZ,WAAW;IACX,WAAW;IACX,YAAY;IACZ,WAAW;IACX,aAAa;IACb,oBAAoB;IACpB,OAAO;CACC,CAAC;AAEX,MAAM,CAAC,MAAM,oBAAoB,GAAG,IAAI,CAAC,wBAAwB,EAAE;IACjE,KAAK,EAAE,8BAA8B;IACrC,WAAW,EACT,+GAA+G;QAC/G,oGAAoG;QACpG,gGAAgG;QAChG,wEAAwE;QACxE,
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{"version":3,"file":"gbif-occurrence-facets.tool.js","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/gbif-occurrence-facets.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAE,IAAI,EAAE,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,cAAc,EAAE,MAAM,iCAAiC,CAAC;AAEjE,MAAM,sBAAsB,GAAG;IAC7B,mBAAmB;IACnB,qBAAqB;IACrB,oBAAoB;IACpB,iBAAiB;IACjB,iBAAiB;IACjB,mBAAmB;IACnB,YAAY;IACZ,YAAY;CACJ,CAAC;AAEX,MAAM,YAAY,GAAG;IACnB,iBAAiB;IACjB,SAAS;IACT,gBAAgB;IAChB,MAAM;IACN,aAAa;IACb,aAAa;IACb,YAAY;IACZ,WAAW;IACX,WAAW;IACX,YAAY;IACZ,WAAW;IACX,aAAa;IACb,oBAAoB;IACpB,OAAO;CACC,CAAC;AAEX,MAAM,CAAC,MAAM,oBAAoB,GAAG,IAAI,CAAC,wBAAwB,EAAE;IACjE,KAAK,EAAE,8BAA8B;IACrC,WAAW,EACT,+GAA+G;QAC/G,oGAAoG;QACpG,gGAAgG;QAChG,wEAAwE;QACxE,qGAAqG;IACvG,WAAW,EAAE,EAAE,YAAY,EAAE,IAAI,EAAE,cAAc,EAAE,IAAI,EAAE,aAAa,EAAE,KAAK,EAAE;IAC/E,KAAK,EAAE,CAAC,CAAC,MAAM,CAAC;QACd,KAAK,EAAE,CAAC;aACL,IAAI,CAAC,YAAY,CAAC;aAClB,QAAQ,CAAC,gFAAgF,CAAC;QAC7F,QAAQ,EAAE,CAAC;aACR,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,CACP,6HAA6H,CAC9H;QACH,OAAO,EAAE,CAAC;aACP,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,CAAC,0DAA0D,CAAC;QACvE,IAAI,EAAE,CAAC;aACJ,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,CACP,4FAA4F,CAC7F;QACH,aAAa,EAAE,CAAC;aACb,IAAI,CAAC,sBAAsB,CAAC;aAC5B,QAAQ,EAAE;aACV,QAAQ,CAAC,sCAAsC,CAAC;QACnD,QAAQ,EAAE,CAAC;aACR,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,CACP,gJAAgJ,CACjJ;QACH,UAAU,EAAE,CAAC;aACV,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,CACP,mMAAmM,CACpM;QACH,UAAU,EAAE,CAAC;aACV,MAAM,EAAE;aACR,GAAG,CAAC,CAAC,CAAC;aACN,GAAG,CAAC,GAAG,CAAC;aACR,OAAO,CAAC,EAAE,CAAC;aACX,QAAQ,CAAC,iEAAiE,CAAC;KAC/E,CAAC;IACF,MAAM,EAAE,CAAC,CAAC,MAAM,CAAC;QACf,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,iCAAiC,CAAC;QAC7D,gBAAgB,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,qDAAqD,CAAC;QAC5F,MAAM,EAAE,CAAC;aACN,KAAK,CACJ,CAAC;aACE,MAAM,CAAC;YACN,IAAI,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,wDAAwD,CAAC;YACnF,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,wCAAwC,CAAC;SACrE,CAAC;aACD,QAAQ,CAAC,0CAA0C,CAAC,CACxD;aACA,QAAQ,CAAC,mEAAmE,CAAC;KACjF,CAAC;IAEF,uEAAuE;IACvE,UAAU,EAAE;QACV,UAAU,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,iCAAiC,CAAC;QAClE,MAAM,EAAE,CAAC;aACN,MAAM,EAAE;aACR,QAAQ,EAAE;aACV,QAAQ,CAAC,gFAAgF,CAAC;KAC9F;IAED,KAAK,CAAC,OAAO,CAAC,KAAK,EAAE,GAAG;QACtB,GAAG,CAAC,GAAG,CAAC,IAAI,CAAC,4BAA4B,EAAE,EAAE,KAAK,EAAE,KAAK,CAAC,KAAK,EAAE,QAAQ,EAAE,KAAK,CAAC,QAAQ,EAAE,CAAC,CAAC;QAC7F,MAAM,GAAG,GAAG,MAAM,cAAc,EAAE,CAAC,mBAAmB,CACpD;YACE,KAAK,EAAE,KAAK,CAAC,KAAK;YAClB,GAAG,CAAC,KAAK,CAAC,QAAQ,KAAK,SAAS,IAAI,EAAE,QAAQ,EAAE,KAAK,CAAC,QAAQ,EAAE,CAAC;YACjE,GAAG,CAAC,KAAK,CAAC,OAAO,EAAE,IAAI,EAAE,IAAI,EAAE,OAAO,EAAE,KAAK,CAAC,OAAO,EAAE,CAAC;YACxD,GAAG,CAAC,KAAK,CAAC,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,KAAK,CAAC,IAAI,EAAE,CAAC;YAC/C,GAAG,CAAC,KAAK,CAAC,aAAa,IAAI,EAAE,aAAa,EAAE,KAAK,CAAC,aAAa,EAAE,CAAC;YAClE,GAAG,CAAC,KAAK,CAAC,QAAQ,EAAE,IAAI,EAAE,IAAI,EAAE,QAAQ,EAAE,KAAK,CAAC,QAAQ,EAAE,CAAC;YAC3D,GAAG,CAAC,KAAK,CAAC,UAAU,EAAE,IAAI,EAAE,IAAI,EAAE,UAAU,EAAE,KAAK,CAAC,UAAU,EAAE,CAAC;YACjE,UAAU,EAAE,KAAK,CAAC,UAAU;SAC7B,EACD,GAAG,CACJ,CAAC;QAEF,MAAM,SAAS,GAAG,GAAG,CAAC,MAAM,EAAE,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,KAAK,EAAE,WAAW,EAAE,KAAK,KAAK,CAAC,KAAK,CAAC,WAAW,EAAE,CAAC,CAAC;QAChG,MAAM,MAAM,GAAG,CAAC,SAAS,EAAE,MAAM,IAAI,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC;YACnD,IAAI,EAAE,CAAC,CAAC,IAAI,IAAI,EAAE;YAClB,KAAK,EAAE,CAAC,CAAC,KAAK,IAAI,CAAC;SACpB,CAAC,CAAC,CAAC;QAEJ,GAAG,CAAC,MAAM,CAAC,EAAE,UAAU,EAAE,KAAK,CAAC,UAAU,EAAE,CAAC,CAAC;QAC7C,IAAI,MAAM,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACxB,GAAG,CAAC,MAAM,CAAC,MAAM,CACf,sIAAsI,CACvI,CAAC;QACJ,CAAC;QAED,OAAO;YACL,KAAK,EAAE,KAAK,CAAC,KAAK;YAClB,gBAAgB,EAAE,GAAG,CAAC,KAAK,IAAI,CAAC;YAChC,MAAM;SACP,CAAC;IACJ,CAAC;IAED,MAAM,EAAE,CAAC,MAAM,EAAE,EAAE;QACjB,MAAM,KAAK,GAAa;YACtB,MAAM,MAAM,CAAC,KAAK,QAAQ;YAC1B,mCAAmC,MAAM,CAAC,gBAAgB,EAAE;YAC5D,SAAS,MAAM,CAAC,MAAM,CAAC,MAAM,YAAY;SAC1C,CAAC;QACF,MAAM,KAAK,GAAG,MAAM,CAAC,gBAAgB,IAAI,CAAC,CAAC;QAC3C,KAAK,MAAM,KAAK,IAAI,MAAM,CAAC,MAAM,EAAE,CAAC;YAClC,MAAM,GAAG,GAAG,CAAC,CAAC,KAAK,CAAC,KAAK,GAAG,KAAK,CAAC,GAAG,GAAG,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC;YACrD,KAAK,CAAC,IAAI,CAAC,OAAO,KAAK,CAAC,IAAI,OAAO,KAAK,CAAC,KAAK,CAAC,cAAc,EAAE,KAAK,GAAG,aAAa,CAAC,CAAC;QACxF,CAAC;QACD,OAAO,CAAC,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IACpD,CAAC;CACF,CAAC,CAAC"}
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hasCoordinate: z.ZodOptional<z.ZodBoolean>;
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isInCluster: z.ZodOptional<z.ZodBoolean>;
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coordinateUncertaintyInMeters: z.ZodOptional<z.ZodString>;
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{"version":3,"file":"gbif-search-occurrences.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/gbif-search-occurrences.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAqBjE,eAAO,MAAM,qBAAqB
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{"version":3,"file":"gbif-search-occurrences.tool.d.ts","sourceRoot":"","sources":["../../../../src/mcp-server/tools/definitions/gbif-search-occurrences.tool.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,EAAQ,CAAC,EAAE,MAAM,wBAAwB,CAAC;AACjD,OAAO,EAAE,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AAqBjE,eAAO,MAAM,qBAAqB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;EA0UhC,CAAC"}
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description: 'Search 2.4B+ GBIF occurrence records with Darwin Core filters. Use taxonKey from gbif_match_species ' +
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'for reliable results — it resolves synonyms automatically. Accepts country (ISO 3166-1 alpha-2), ' +
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'basis of record, coordinate filter, and dataset key. Pagination is capped at approximately offset+limit=100,000 — ' +
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'use gbif_occurrence_facets for aggregate counts across large result sets.',
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.describe('When true, return only georeferenced records. When false,
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.describe('When true, return only georeferenced records (those with coordinates). When false, return ONLY records without coordinates. Omit the parameter entirely to include all records regardless of coordinate presence.'),
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.describe('Filter by coordinate uncertainty radius in meters. Range format: "min,max" (e.g., "0,1000" for sub-kilometer precision). Both endpoints inclusive.'),
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.optional()
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.describe('Restrict results to a single dataset by its GBIF dataset UUID. Obtain one from gbif_search_datasets, gbif_get_dataset, a DATASET_KEY facet (gbif_occurrence_facets), or the datasetKey field on an occurrence record.'),
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...(input.coordinateUncertaintyInMeters?.trim() && {
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coordinateUncertaintyInMeters: input.coordinateUncertaintyInMeters,
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}),
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...(input.datasetKey?.trim() && { datasetKey: input.datasetKey }),
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}, ctx);
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-
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-
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|
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1
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+
{"version":3,"file":"gbif-service.d.ts","sourceRoot":"","sources":["../../../src/services/gbif/gbif-service.ts"],"names":[],"mappings":"AAAA;;;GAGG;AAEH,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,wBAAwB,CAAC;AACtD,OAAO,KAAK,EAAE,SAAS,EAAE,MAAM,+BAA+B,CAAC;AAE/D,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,gCAAgC,CAAC;AAErE,OAAO,KAAK,EACV,aAAa,EACb,mBAAmB,EACnB,gBAAgB,EAChB,wBAAwB,EACxB,mBAAmB,EACnB,2BAA2B,EAC3B,6BAA6B,EAC7B,aAAa,EACb,eAAe,EACf,gBAAgB,EAChB,wBAAwB,EACzB,MAAM,YAAY,CAAC;AAIpB,qBAAa,WAAW;IACtB,OAAO,CAAC,QAAQ,CAAC,OAAO,CAAS;IACjC,OAAO,CAAC,QAAQ,CAAC,SAAS,CAAS;gBAGjC,OAAO,EAAE,SAAS,EAClB,QAAQ,EAAE,cAAc,EACxB,IAAI,EAAE;QAAE,OAAO,EAAE,MAAM,CAAC;QAAC,SAAS,EAAE,MAAM,CAAA;KAAE;IAQ9C,OAAO,CAAC,QAAQ;IAahB,OAAO,CAAC,OAAO;IAsCf,YAAY,CACV,MAAM,EAAE;QACN,IAAI,EAAE,MAAM,CAAC;QACb,MAAM,CAAC,EAAE,OAAO,CAAC;QACjB,OAAO,CAAC,EAAE,MAAM,CAAC;QACjB,IAAI,CAAC,EAAE,MAAM,CAAC;KACf,EACD,GAAG,EAAE,OAAO,GACX,OAAO,CAAC,eAAe,CAAC;IAU3B,UAAU,CAAC,QAAQ,EAAE,MAAM,EAAE,GAAG,EAAE,OAAO,GAAG,OAAO,CAAC,gBAAgB,CAAC;IAMrE,aAAa,CACX,MAAM,EAAE;QACN,CAAC,CAAC,EAAE,MAAM,CAAC;QACX,IAAI,CAAC,EAAE,MAAM,CAAC;QACd,OAAO,CAAC,EAAE,MAAM,CAAC;QACjB,MAAM,CAAC,EAAE,MAAM,CAAC;QAChB,KAAK,CAAC,EAAE,MAAM,CAAC;QACf,SAAS,CAAC,EAAE,OAAO,CAAC;QACpB,UAAU,CAAC,EAAE,MAAM,CAAC;QACpB,KAAK,CAAC,EAAE,MAAM,CAAC;QACf,MAAM,CAAC,EAAE,MAAM,CAAC;KACjB,EACD,GAAG,EAAE,OAAO,GACX,OAAO,CAAC,wBAAwB,CAAC;IAgBpC,iBAAiB,CAAC,QAAQ,EAAE,MAAM,EAAE,GAAG,EAAE,OAAO,GAAG,OAAO,CAAC,aAAa,EAAE,CAAC;IAM3E,kBAAkB,CAChB,QAAQ,EAAE,MAAM,EAChB,MAAM,EAAE;QAAE,KAAK,CAAC,EAAE,MAAM,CAAC;QAAC,MAAM,CAAC,EAAE,MAAM,CAAA;KAAE,EAC3C,GAAG,EAAE,OAAO,GACX,OAAO,CAAC,mBAAmB,CAAC;IAW/B,iBAAiB,CACf,MAAM,EAAE;QACN,QAAQ,CAAC,EAAE,MAAM,CAAC;QAClB,cAAc,CAAC,EAAE,MAAM,CAAC;QACxB,OAAO,CAAC,EAAE,MAAM,CAAC;QACjB,eAAe,CAAC,EAAE,MAAM,CAAC;QACzB,gBAAgB,CAAC,EAAE,MAAM,CAAC;QAC1B,QAAQ,CAAC,EAAE,MAAM,CAAC;QAClB,IAAI,CAAC,EAAE,MAAM,CAAC;QACd,KAAK,CAAC,EAAE,MAAM,CAAC;QACf,aAAa,CAAC,EAAE,aAAa,CAAC;QAC9B,aAAa,CAAC,EAAE,OAAO,CAAC;QACxB,WAAW,CAAC,EAAE,OAAO,CAAC;QACtB,6BAA6B,CAAC,EAAE,MAAM,CAAC;QACvC,UAAU,CAAC,EAAE,MAAM,CAAC;QACpB,KAAK,CAAC,EAAE,MAAM,CAAC;QACf,MAAM,CAAC,EAAE,MAAM,CAAC;KACjB,EACD,GAAG,EAAE,OAAO,GACX,OAAO,CAAC,2BAA2B,CAAC;IAuBvC,gBAAgB,CACd,MAAM,EAAE;QACN,QAAQ,CAAC,EAAE,MAAM,CAAC;QAClB,OAAO,CAAC,EAAE,MAAM,CAAC;QACjB,eAAe,CAAC,EAAE,OAAO,CAAC;QAC1B,UAAU,CAAC,EAAE,MAAM,CAAC;QACpB,IAAI,CAAC,EAAE,MAAM,CAAC;KACf,EACD,GAAG,EAAE,OAAO,GACX,OAAO,CAAC,MAAM,CAAC;IAYlB,aAAa,CAAC,aAAa,EAAE,MAAM,EAAE,GAAG,EAAE,OAAO,GAAG,OAAO,CAAC,mBAAmB,CAAC;IAMhF,mBAAmB,CACjB,MAAM,EAAE;QACN,QAAQ,CAAC,EAAE,MAAM,CAAC;QAClB,OAAO,CAAC,EAAE,MAAM,CAAC;QACjB,IAAI,CAAC,EAAE,MAAM,CAAC;QACd,aAAa,CAAC,EAAE,aAAa,CAAC;QAC9B,QAAQ,CAAC,EAAE,MAAM,CAAC;QAClB,UAAU,CAAC,EAAE,MAAM,CAAC;QACpB,KAAK,EAAE,MAAM,CAAC;QACd,UAAU,CAAC,EAAE,MAAM,CAAC;KACrB,EACD,GAAG,EAAE,OAAO,GACX,OAAO,CAAC,2BAA2B,CAAC;IAgBvC,cAAc,CACZ,MAAM,EAAE;QACN,CAAC,CAAC,EAAE,MAAM,CAAC;QACX,IAAI,CAAC,EAAE,MAAM,CAAC;QACd,iBAAiB,CAAC,EAAE,MAAM,CAAC;QAC3B,UAAU,CAAC,EAAE,MAAM,CAAC;QACpB,KAAK,CAAC,EAAE,MAAM,CAAC;QACf,MAAM,CAAC,EAAE,MAAM,CAAC;KACjB,EACD,GAAG,EAAE,OAAO,GACX,OAAO,CAAC,wBAAwB,CAAC;IAapC,UAAU,CAAC,UAAU,EAAE,MAAM,EAAE,GAAG,EAAE,OAAO,GAAG,OAAO,CAAC,gBAAgB,CAAC;IAQvE,gBAAgB,CACd,MAAM,EAAE;QACN,CAAC,CAAC,EAAE,MAAM,CAAC;QACX,OAAO,CAAC,EAAE,MAAM,CAAC;QACjB,KAAK,CAAC,EAAE,MAAM,CAAC;QACf,MAAM,CAAC,EAAE,MAAM,CAAC;KACjB,EACD,GAAG,EAAE,OAAO,GACX,OAAO,CAAC,6BAA6B,CAAC;CAU1C;AAMD,wBAAgB,eAAe,CAC7B,MAAM,EAAE,SAAS,EACjB,OAAO,EAAE,cAAc,EACvB,IAAI,EAAE;IAAE,OAAO,EAAE,MAAM,CAAC;IAAC,SAAS,EAAE,MAAM,CAAA;CAAE,GAC3C,IAAI,CAEN;AAED,wBAAgB,cAAc,IAAI,WAAW,CAK5C"}
|
|
@@ -186,6 +186,8 @@ export class GbifService {
|
|
|
186
186
|
queryParams.basisOfRecord = params.basisOfRecord;
|
|
187
187
|
if (params.geometry)
|
|
188
188
|
queryParams.geometry = params.geometry;
|
|
189
|
+
if (params.datasetKey)
|
|
190
|
+
queryParams.datasetKey = params.datasetKey;
|
|
189
191
|
if (params.facetLimit !== undefined)
|
|
190
192
|
queryParams.facetLimit = params.facetLimit;
|
|
191
193
|
const url = this.buildUrl('/occurrence/search', queryParams);
|
|
@@ -1 +1 @@
|
|
|
1
|
-
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+
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|
package/package.json
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "@cyanheads/gbif-biodiversity-mcp-server",
|
|
3
|
-
"version": "0.
|
|
3
|
+
"version": "0.4.0",
|
|
4
4
|
"mcpName": "io.github.cyanheads/gbif-biodiversity-mcp-server",
|
|
5
5
|
"description": "Search GBIF species taxonomy, occurrence records, datasets, and publishers via MCP. STDIO or Streamable HTTP.",
|
|
6
6
|
"type": "module",
|
|
@@ -27,7 +27,6 @@
|
|
|
27
27
|
"changelog:check": "bun run scripts/build-changelog.ts --check",
|
|
28
28
|
"release:github": "bun run scripts/release-github.ts",
|
|
29
29
|
"publish-mcp": "mcp-publisher login github -token \"$(security find-generic-password -a \"$USER\" -s mcp-publisher-github-pat -w)\" && mcp-publisher publish",
|
|
30
|
-
"publish:compat": "cd dist && jq '.name = \"@cyanheads/gbif-mcp-server\"' package.json > tmp.json && mv tmp.json package.json && npm publish --access public && jq '.name = \"@cyanheads/gbif-biodiversity-mcp-server\"' package.json > tmp.json && mv tmp.json package.json",
|
|
31
30
|
"start:stdio": "MCP_TRANSPORT_TYPE=stdio bun ./dist/index.js",
|
|
32
31
|
"start:http": "MCP_TRANSPORT_TYPE=http bun ./dist/index.js"
|
|
33
32
|
},
|
|
@@ -76,7 +75,7 @@
|
|
|
76
75
|
"access": "public"
|
|
77
76
|
},
|
|
78
77
|
"dependencies": {
|
|
79
|
-
"@cyanheads/mcp-ts-core": "^0.10.
|
|
78
|
+
"@cyanheads/mcp-ts-core": "^0.10.10",
|
|
80
79
|
"pino-pretty": "^13.1.3",
|
|
81
80
|
"zod": "^4.4.3"
|
|
82
81
|
},
|
package/server.json
CHANGED
|
@@ -12,14 +12,14 @@
|
|
|
12
12
|
"url": "https://gbif-biodiversity.caseyjhand.com/mcp"
|
|
13
13
|
}
|
|
14
14
|
],
|
|
15
|
-
"version": "0.
|
|
15
|
+
"version": "0.4.0",
|
|
16
16
|
"packages": [
|
|
17
17
|
{
|
|
18
18
|
"registryType": "npm",
|
|
19
19
|
"registryBaseUrl": "https://registry.npmjs.org",
|
|
20
20
|
"identifier": "@cyanheads/gbif-biodiversity-mcp-server",
|
|
21
21
|
"runtimeHint": "bun",
|
|
22
|
-
"version": "0.
|
|
22
|
+
"version": "0.4.0",
|
|
23
23
|
"packageArguments": [
|
|
24
24
|
{
|
|
25
25
|
"type": "positional",
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@@ -48,7 +48,7 @@
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48
48
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"registryBaseUrl": "https://registry.npmjs.org",
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49
49
|
"identifier": "@cyanheads/gbif-biodiversity-mcp-server",
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50
50
|
"runtimeHint": "bun",
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51
|
-
"version": "0.
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51
|
+
"version": "0.4.0",
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52
52
|
"packageArguments": [
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|
53
53
|
{
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|
54
54
|
"type": "positional",
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